BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 28,443 sequences; 8,809,921 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subun... 860 0.0 sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subun... 658 0.0 sp|Q3SI99|CLPX_THIDA ATP-dependent Clp protease ATP-binding subun... 642 0.0 sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding subun... 596 0.0 sp|Q8UFY5|CLPX_AGRFC ATP-dependent Clp protease ATP-binding subun... 596 0.0 sp|Q8G0I5|CLPX_BRUSU ATP-dependent Clp protease ATP-binding subun... 586 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU O... 93.6 7e-21 sp|A4XPN6|HSLU_PSEMY ATP-dependent protease ATPase subunit HslU O... 93.2 9e-21 sp|Q92TA7|HSLU_RHIME ATP-dependent protease ATPase subunit HslU O... 92.8 1e-20 sp|Q8UJ87|HSLU_AGRFC ATP-dependent protease ATPase subunit HslU O... 92.0 2e-20 sp|Q8FY12|HSLU_BRUSU ATP-dependent protease ATPase subunit HslU O... 90.9 5e-20 tr|Q3SFW1|Q3SFW1_THIDA ATP-dependent protease ATPase subunit HslU... 86.7 2e-18 sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=E... 46.2 2e-05 tr|A0A0H3GCZ6|A0A0H3GCZ6_BRUSU ATP-dependent zinc metalloprotease... 45.4 3e-05 tr|Q92M98|Q92M98_RHIME ATP-dependent zinc metalloprotease FtsH OS... 45.4 3e-05 tr|Q7CT50|Q7CT50_AGRFC ATP-dependent zinc metalloprotease FtsH OS... 45.4 4e-05 tr|Q3SJR4|Q3SJR4_THIDA ATP-dependent zinc metalloprotease FtsH OS... 43.5 1e-04 sp|Q9JUB0|RUVB_NEIMA Holliday junction branch migration complex s... 42.7 2e-04 sp|P0ABH9|CLPA_ECOLI ATP-dependent Clp protease ATP-binding subun... 43.1 2e-04 tr|Q3SJH1|Q3SJH1_THIDA ATP-dependent Clp protease, ATP-binding su... 42.7 3e-04 tr|A0A0U1RJ22|A0A0U1RJ22_NEIMA Replication-associated recombinati... 40.8 9e-04 >sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 >sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=clpX PE=3 SV=1 Length=426 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/420 (78%), Positives = 359/420 (85%), Gaps = 2/420 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EI LD YVIGQE+AKKVL+VAVYNHYKRL D + VELGKSNILLIG Sbjct 61 SAHKLPAPKEISAILDQYVIGQERAKKVLSVAVYNHYKRLNQRDKKDDVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL+KVI R T GIGFGA V++K + GE L +VEP+DL+KFG Sbjct 241 TRNILFICGGAFAGLEKVIQAR-STKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL ++A Sbjct 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 ++A+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG SKPLLIY E Q Sbjct 360 QRALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSKPLLIYENSEPQ 419 >sp|Q3SI99|CLPX_THIDA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=clpX PE=3 SV=1 Length=423 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/415 (77%), Positives = 359/415 (87%), Gaps = 6/415 (1%) Query 1 MTDKRKDGSG-KLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M DK GSG KLLYCSFCGKSQHEVRKLIAGPSV+ICDECV+LCNDIIREEI++ + Sbjct 1 MADK---GSGDKLLYCSFCGKSQHEVRKLIAGPSVFICDECVELCNDIIREEIQQADSQK 57 Query 60 ERSA-LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLI 118 S+ LPTPHEI LD YVIGQ QAKK LAVAVYNHYKRLR+ S VEL KSNILLI Sbjct 58 GASSDLPTPHEISGILDQYVIGQGQAKKALAVAVYNHYKRLRSSSGSGDVELAKSNILLI 117 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQKCDYDV KA++ Sbjct 118 GPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAKQ 177 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRK+DNPSITRDVSGEGVQQALLKLIEGT A+VPPQGGRKHP QEF+QV Sbjct 178 GIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPNQEFVQV 237 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DTS ILFICGGAF+GL+KVI R E G GIGFGA VK + + ELL QVEPEDLIK+ Sbjct 238 DTSNILFICGGAFSGLEKVIRGRTEKG-GIGFGAQVKNVDENKRDAELLHQVEPEDLIKY 296 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL+EL E AL+QIL EPKNALTKQ+ LF +EGVDLEFRD+AL+AI Sbjct 297 GLIPEFVGRLPVVATLDELDEAALVQILTEPKNALTKQFAKLFKMEGVDLEFRDDALNAI 356 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 AK+A+ R+TGARGLRSI+E ALLDTMYDLPS++ V KVV+D ++I G+ +PLLIY Sbjct 357 AKRALLRRTGARGLRSIIEHALLDTMYDLPSLKGVSKVVVDNALISGEGQPLLIY 411 >sp|Q92QQ2|CLPX_RHIME ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium meliloti (strain 1021) OX=266834 GN=clpX PE=3 SV=1 Length=425 Score = 596 bits (1537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/407 (71%), Positives = 346/407 (85%), Gaps = 3/407 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK-TSMVKSRDGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LD+YVIGQ+QAK++L+VAV+NHYKRL + S+ VEL KSNI+L+GPTG GKT L Sbjct 71 EIIKVLDEYVIGQQQAKRILSVAVHNHYKRLAHAAKSSDVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATV+A D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVRAPEDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 ARGLRSI+E LLDTM++LP++E V +VVI + V+ G ++PL IY + Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISDEVVKGTARPLYIYSE 415 >sp|Q8UFY5|CLPX_AGRFC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=clpX PE=3 SV=1 Length=425 Score = 596 bits (1537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/414 (71%), Positives = 349/414 (84%), Gaps = 3/414 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 12 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENK-TSMVKSREGVPTPQ 70 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ+QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 71 DIIKILDEYVIGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYL 130 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 131 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 190 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 191 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 250 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGATVKA+ D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 251 GAFAGLDKIISARGEKTS-IGFGATVKAEDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 308 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 309 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTG 368 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 ARGLRSI+E LLDTM++LP++E V +VVI V+ G ++PL IY + ++A+ Sbjct 369 ARGLRSIMEKILLDTMFELPTLEGVREVVISNDVVSGVARPLYIYADRQEEKAN 422 >sp|Q8G0I5|CLPX_BRUSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=clpX PE=3 SV=1 Length=424 Score = 586 bits (1511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 288/414 (70%), Positives = 346/414 (84%), Gaps = 3/414 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 11 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSREGVPTPQ 69 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ+ AK+VL+VAV+NHYKRL + ++ +EL KSNILL+GPTG GKT L Sbjct 70 EIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGKTYL 129 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPF MADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 130 AQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 190 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 249 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++IS R E S IGFGATVK+ D+ GE+ ++EPEDL+KFGLIPEF+GRL Sbjct 250 GAFAGLDRIISARGEKTS-IGFGATVKS-VDERRIGEVFKELEPEDLLKFGLIPEFVGRL 307 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L +AL+QIL EPKNAL KQYQ LF++E V+L F D+AL AIA KA+ KTG Sbjct 308 PVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTG 367 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 ARGLRSI+E LLDTM++LP++E V +VVI V+DG ++PL IY + + ++ + Sbjct 368 ARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYIYAERQDEKGN 421 >sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 >sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU OS=Escherichia coli (strain K12) OX=83333 GN=hslU PE=1 SV=1 Length=443 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ+ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ + S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGE--SSGPDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF + SD Sbjct 297 -VKTDHILFIASGAF---------------------QIAKPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL EGV++EF D + Sbjct 318 ---LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + + YD Sbjct 375 RIAEAAWQVNESTENIGARRLHTVLERLMEEISYD 409 >sp|A4XPN6|HSLU_PSEMY ATP-dependent protease ATPase subunit HslU OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=hslU PE=3 SV=1 Length=446 Score = 93.2 bits (230), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 47/101 (47%), Positives = 68/101 (67%), Gaps = 3/101 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ D E+ NIL+IGPTG G Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPADLRQ--EVTPKNILMIGPTGVG 61 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 KT +A LA+L + PF +AT TE GYVG DVE+II+ L Sbjct 62 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDL 102 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/238 (32%), Positives = 107/238 (45%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK++++ + DVS EGVQ+ LL LIEG + Sbjct 248 QHGIVFIDEIDKVAKRGNTGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DL+ Sbjct 295 MVKTDHILFIASGAFH----------------------------------LAK--PSDLV 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS + +IL EP +LT+QY AL EG+++EF +E + Sbjct 319 -----PELQGRLPIRVELKALSPQDFERILTEPHASLTEQYAALLKTEGLNIEFAEEGIK 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL + E + ID + ++G Sbjct 374 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQSGEPIRIDAAYVNGH 431 >sp|Q92TA7|HSLU_RHIME ATP-dependent protease ATPase subunit HslU OS=Rhizobium meliloti (strain 1021) OX=266834 GN=hslU PE=3 SV=1 Length=435 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD Y+IGQ+ AK+ +A+A+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRYIIGQKDAKRAVAIALRNRWRRQQLDDELRD-EVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE I++ L++ Sbjct 64 TEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIVRDLVE 105 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 102/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + I VS EGVQ+ LL L+EGT A ++ V Sbjct 243 GIVFLDEIDKIATREG--GIGAGVSREGVQRDLLPLVEGTTVAT-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF H +P DL+ Sbjct 290 KTDHILFIASGAF--------H----------------------------VAKPSDLL-- 311 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PE GRLP+ L L++E +IL E + +L +QY+AL EGV L+F ++A+DA+ Sbjct 312 ---PELQGRLPIRVELRALTKEDFRRILTETEASLIRQYKALLETEGVALDFTEDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A+ A+ GAR L++++E L D ++ P Sbjct 369 AEVAVQLNANVENIGARRLQTVMERVLDDVSFNAP 403 >sp|Q8UJ87|HSLU_AGRFC ATP-dependent protease ATPase subunit HslU OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=hslU PE=3 SV=1 Length=435 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 67/102 (66%), Gaps = 1/102 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 +P EI + LD ++IGQ AK+ +A+A+ N ++R + D S E+ NIL+IGPTG GK Sbjct 5 SPREIVSELDRHIIGQHDAKRAVAIALRNRWRR-QQLDESLRDEVMPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 T ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 64 TEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/215 (31%), Positives = 101/215 (47%), Gaps = 59/215 (27%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 243 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 289 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T +LFI GAF +P DL+ Sbjct 290 KTDHVLFIASGAFH------------------------------------VAKPSDLL-- 311 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 PE GRLP+ L L++E +IL E + +L +QY+AL E +DL+F D+A+DA+ Sbjct 312 ---PELQGRLPIRVELKPLTKEDFRRILTETEASLIRQYKALMATEELDLDFTDDAIDAL 368 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYDLP 388 A A+ GAR L++++E L + ++ P Sbjct 369 ADVAVHLNSSVENIGARRLQTVMERVLDEISFNAP 403 >sp|Q8FY12|HSLU_BRUSU ATP-dependent protease ATPase subunit HslU OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=hslU PE=3 SV=1 Length=434 Score = 90.9 bits (224), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 +P EI + LD ++IGQ+ AK+ +A+A+ N ++R + G E+ NIL+IGPTG G Sbjct 5 SPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMRE--EVMPKNILMIGPTGVG 62 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 KT ++ LA+L PF +AT TE GYVG DVE II+ L++ V++ +R Sbjct 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRR 116 Score = 87.8 bits (216), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 106/235 (45%), Gaps = 65/235 (28%) Query 164 KLLQKCDYDVQKAQR-----GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 KLL + D VQ+A R GIV+IDEIDKI+ + VS EGVQ+ LL L+EGT Sbjct 223 KLLDQ-DQIVQEALRVSEDEGIVFIDEIDKIAAREGGSGA--GVSREGVQRDLLPLVEGT 279 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 A ++ V T ILFI GAF H V S Sbjct 280 TVAT-----------KYGPVKTDHILFITSGAF--------H-------------VSKPS 307 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D L+PE GRLP+ L+ L+ E +IL E + +L KQY Sbjct 308 D--------------------LLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYI 347 Query 339 ALFNLEGVDLEFRDEALDAIAK-----KAMARKTGARGLRSIVEAALLDTMYDLP 388 AL E V LEF D+A+DA+A A GAR L++++E L + + P Sbjct 348 ALMETEEVKLEFSDDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAP 402 >tr|Q3SFW1|Q3SFW1_THIDA ATP-dependent protease ATPase subunit HslU OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=hslU PE=3 SV=1 Length=438 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 102/236 (43%), Gaps = 66/236 (28%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDKI+ +SD DVS +GVQ+ LL LIEGT + ++ Sbjct 245 QNGIVFLDEIDKIATRSDAHG--SDVSRQGVQRDLLPLIEGTTVST-----------KYG 291 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF L K P DLI Sbjct 292 MVKTDHILFIASGAF-HLSK-----------------------------------PSDLI 315 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS + +IL LT+QY+AL EGV L F + + Sbjct 316 -----PELQGRLPIRVELQALSVDDFERILTATDACLTRQYEALLATEGVALRFTEGGIR 370 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 407 IA+ A GAR L +++E L D +D S V E VID ++ Sbjct 371 RIAEIAFEVNERTENIGARRLHTVMEKLLEDISFDAGS-------VTGEHVIDAEA 419 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ AK+ +AVA+ N ++R + + E+ NIL+IGPTG GK Sbjct 2 TPKEIVHELDKHIVGQAAAKRAVAVALRNRWRRQQVAEPLRQ-EITPKNILMIGPTGVGK 60 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 T +A LARL + PF +AT TE GYVG DV+ I++ L++ Sbjct 61 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIVRDLMETA 104 >sp|P0AAI3|FTSH_ECOLI ATP-dependent zinc metalloprotease FtsH OS=Escherichia coli (strain K12) OX=83333 GN=ftsH PE=1 SV=1 Length=644 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >tr|A0A0H3GCZ6|A0A0H3GCZ6_BRUSU ATP-dependent zinc metalloprotease FtsH OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=ftsH PE=3 SV=1 Length=644 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 193 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 246 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 247 KNAPCIIFIDEIDAVGR 263 >tr|Q92M98|Q92M98_RHIME ATP-dependent zinc metalloprotease FtsH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ftsH PE=3 SV=1 Length=645 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 >tr|Q7CT50|Q7CT50_AGRFC ATP-dependent zinc metalloprotease FtsH OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=ftsH PE=3 SV=2 Length=648 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 >tr|Q3SJR4|Q3SJR4_THIDA ATP-dependent zinc metalloprotease FtsH OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=ftsH PE=3 SV=1 Length=630 Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA ++A VPF + E +VG + Q + Sbjct 190 VLMVGPPGTGKTLLARSIAGEAKVPFFSISGSDFVEM-FVGVGAARVRDMFEQ-----AK 243 Query 175 KAQRGIVYIDEIDKISRK 192 K I++IDEID + R+ Sbjct 244 KNAPCIIFIDEIDAVGRQ 261 >sp|Q9JUB0|RUVB_NEIMA Holliday junction branch migration complex subunit RuvB OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=ruvB PE=3 SV=1 Length=343 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 54/118 (46%), Gaps = 27/118 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 LDDY IGQ +AK+ LA+ + KR D ++LL GP G GKT LA +A Sbjct 37 LDDY-IGQHKAKEQLAIFIQAAKKRGEALD----------HVLLFGPPGLGKTTLAHIIA 85 Query 134 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCD-YDVQKAQRGIVYIDEIDKIS 190 + L V L AG + LL D +DV ++IDEI ++S Sbjct 86 KELGVNLRQTSGPVLERAGDLA--------ALLTNLDPHDV-------LFIDEIHRLS 128 >sp|P0ABH9|CLPA_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpA OS=Escherichia coli (strain K12) OX=83333 GN=clpA PE=1 SV=1 Length=758 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 45/89 (51%), Gaps = 16/89 (18%) Query 112 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADATT--------LTEAGYVGEDVEN 160 K+N LL+G +G GKT +AE LA + DVP MAD T L Y G D E Sbjct 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEK 265 Query 161 IIQKLLQKCDYDVQKAQRGIVYIDEIDKI 189 + LL++ + D I++IDEI I Sbjct 266 RFKALLKQLEQDTN----SILFIDEIHTI 290 >tr|Q3SJH1|Q3SJH1_THIDA ATP-dependent Clp protease, ATP-binding subunit OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=Tbd_1237 PE=3 SV=1 Length=750 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 78/325 (24%), Positives = 123/325 (38%), Gaps = 74/325 (23%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V GQ+ A L+ A+ L N G N L GPTG GKT +A LA Sbjct 455 LKAVVYGQDAAIDALSTAIKMSRSGLGNPQKPIG------NFLFSGPTGVGKTEVARQLA 508 Query 134 RLLDVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 +L V D + E GYVG D ++ + + K Y +V Sbjct 509 YVLGVELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAVTKHPY-------AVVL 561 Query 183 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTS 241 +DE++K +P I LL++++ GT+ GRK +F V Sbjct 562 LDEVEKA-----HPDIF---------NVLLQVMDHGTLTDT---NGRK---ADFRNV--- 598 Query 242 KILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLI 301 +L + A A + + IGF A + D+ E IK Sbjct 599 -VLIMTTNAGA--------EMLNKATIGF-AGARESGDEMGE------------IKRMFT 636 Query 302 PEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 361 PEF RL + LSE ++Q++++ Q + + + V+ F D +AK Sbjct 637 PEFRNRLDAIIPFAPLSEPVILQVVEK----FLMQLEEQLHEKKVEAVFTDALKAYLAKH 692 Query 362 AMARKTGARGLRSIVEAALLDTMYD 386 GAR + +++ + + D Sbjct 693 GFDPSMGARPMARLIQDTIRKALAD 717 >tr|A0A0U1RJ22|A0A0U1RJ22_NEIMA Replication-associated recombination protein A OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=NMA1433 PE=3 SV=1 Length=436 Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 42/156 (27%), Positives = 68/156 (44%), Gaps = 29/156 (19%) Query 65 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSN-ILLIGPTGS 123 P +R H D V+GQE + K LR VE GK + +LL GP G Sbjct 12 PLAERLRPHTLDDVVGQEH--------LIGEGKPLRVA-----VEGGKPHSMLLWGPPGV 58 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKT LA LA+ + F A V V++ I++ + K + +Q+ + I+++ Sbjct 59 GKTTLARILAQSFNAQFLPVSA--------VFSGVKD-IREAIDKAEIALQQGRATILFV 109 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTV 219 DE+ + ++ + + V+ LL I T Sbjct 110 DEVHRFNKAQQDAFLPH------VESGLLTFIGATT 139 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1948070800 Database: proteomes.fasta Posted date: Apr 25, 2024 11:22 PM Number of letters in database: 8,809,921 Number of sequences in database: 28,443 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40