RID: 4CVVPYFF016 Job Title:>POLN_ABPVR Q9DSN9 Peptidase C3 1126..1343 Program: BLASTP Query: unnamed protein product ID: lcl|Query_167249(amino acid) Length: 218 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein [Acute bee paralysis virus... Acute bee pa... NA 1217067 456 456 100% 4e-148 100.00 1906 Q9DSN9.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Drosophila C... NA 865617 55.1 55.1 71% 1e-07 27.78 1759 O36966.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Cricket para... NA 928300 43.9 43.9 98% 5e-04 21.95 1771 Q9IJX4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475778 42.4 42.4 91% 0.002 27.32 2134 Q9YLS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475779 42.4 42.4 91% 0.002 27.32 2134 Q6R325.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 40.8 40.8 65% 0.006 25.85 3473 Q83034.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 40.8 40.8 39% 0.007 28.87 3471 Q91PP5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475780 39.7 39.7 90% 0.014 27.09 2134 Q6WQ42.1 Alignments: >RecName: Full=Replicase polyprotein [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN9.1 Length: 1906 Range 1: 1126 to 1343 Score:456 bits(1172), Expect:4e-148, Method:Compositional matrix adjust., Identities:218/218(100%), Positives:218/218(100%), Gaps:0/218(0%) Query 1 QVAQKLITNRVLTNLYKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIR 60 QVAQKLITNRVLTNLYKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIR Sbjct 1126 QVAQKLITNRVLTNLYKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIR 1185 Query 61 NLFDVVFRVPWKDVKKVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRC 120 NLFDVVFRVPWKDVKKVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRC Sbjct 1186 NLFDVVFRVPWKDVKKVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRC 1245 Query 121 EVTLPVLRYSDKMNRFLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDC 180 EVTLPVLRYSDKMNRFLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDC Sbjct 1246 EVTLPVLRYSDKMNRFLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPTTNGDC 1305 Query 181 GAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDL 218 GAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDL Sbjct 1306 GAPLVINETQVIRKIAGIHVAGDARGKAYAESISQKDL 1343 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Drosophila C virus strain EB] Sequence ID: O36966.1 Length: 1759 Range 1: 1038 to 1189 Score:55.1 bits(131), Expect:1e-07, Method:Compositional matrix adjust., Identities:45/162(28%), Positives:71/162(43%), Gaps:17/162(10%) Query 62 LFDVVFRVPWKDVKKVDVVNAFGESKEAVLLCFPKFVCQ-HTDLVKHFQDSESMSKFKRC 120 L D R+P+K+ G+ ++ V++ +C H DLV+HF + K K Sbjct 1038 LTDNCVRLPFKN----------GDFRDCVMVNLHSRMCTPHRDLVRHFILTSDQGKLKGS 1087 Query 121 EVTLPVLRYSDKMN-----RFLATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMPT 175 + + M +L + CDK P + + YI R EY PT Sbjct 1088 FSGAMATFHVNNMGLYRVYNWLNAVRPCDKKIEIFHPEDGFEYPEESYIQRDCYEYNAPT 1147 Query 176 TNGDCGAPLVINETQVIRKIAGIHVAG-DARGKAYAESISQK 216 GDCG+ + + + RKI G+H+AG DA YA ++Q+ Sbjct 1148 RTGDCGSIIGLYNKYLERKIIGMHIAGNDAEEHGYACPLTQE 1189 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; AltName: Full=CrPV-1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968] Sequence ID: Q9IJX4.1 Length: 1771 Range 1: 956 to 1199 Score:43.9 bits(102), Expect:5e-04, Method:Compositional matrix adjust., Identities:54/246(22%), Positives:99/246(40%), Gaps:33/246(13%) Query 2 VAQKLITNRVLTNLYKICLVKE---NGDM--VPLLNGLFVRSNIMLAPGHLVGFLSDSDT 56 A L+ + + N Y CL E G+M L F+R + + P H + L Sbjct 956 AAHALVLDVLQKNTY--CLYYERMVKGEMKRYRLATATFLRGWVCMMPYHFIETLYARKV 1013 Query 57 IEIRNLF------DVVFRVPWK-----DVKKVDVVNAFGE-------SKEAVLLCFPKFV 98 N++ D V VP + ++V++ A ++ VL+ + + Sbjct 1014 APSTNIYFSQPNCDDVIVVPVSHFIAPNAERVELTTACTRIHYKDETPRDCVLVNLHRRM 1073 Query 99 CQ-HTDLVKHFQDSESMSKFKRC-EVTLPVLRYSD----KMNRFLATLIECDK-VEAYDR 151 C H D++KHF + + TL S + ++L + D+ + Y Sbjct 1074 CHPHRDILKHFVKKSDQGNLRGVFQGTLATFHQSANELCRAYQWLQAIRPLDQEITIYHE 1133 Query 152 PYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIRKIAGIHVAGD-ARGKAYA 210 + D Y R EY PT G+CG+ + + ++ RK+ G+H+ G+ + YA Sbjct 1134 DTDMFDYESESYTQRDCYEYNAPTQTGNCGSIVGLYNKRMERKLIGMHIPGNVSECHGYA 1193 Query 211 ESISQK 216 ++Q+ Sbjct 1194 CPLTQE 1199 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Calnek] Sequence ID: Q9YLS4.1 Length: 2134 Range 1: 1438 to 1629 Score:42.4 bits(98), Expect:0.002, Method:Compositional matrix adjust., Identities:56/205(27%), Positives:86/205(41%), Gaps:18/205(8%) Query 7 ITNRVLTNLYKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIRNLFDVV 66 I+N V NL ++ + + L NGL V +L P H + D + I + Sbjct 1438 ISNVVHGNLVRVGVGPNEARIHWLYNGLGVYDTYILMPYHGIKDADVDDDLYIERAGTIY 1497 Query 67 FRVPWKDVKKVDVVNAFGESKEA--VLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTL 124 ++K V V+ F ES+E VL+ P+ + + D+ HF E++ + + TL Sbjct 1498 S----TNMKMVQVL--FLESREGDLVLINVPR-LPKFRDIRNHFSTEENIRRAEGMPGTL 1550 Query 125 PVLRYSDKMNRF-LATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMP--TTNGDCG 181 L + RF L T + VEA Y D + + G + T G CG Sbjct 1551 CTLDH----ERFTLVTESDLKMVEA--ATYVCEDDKGVRTDISVGRSWKAKACTVAGMCG 1604 Query 182 APLVINETQVIRKIAGIHVAGDARG 206 LV + ++ I GIHVAG A Sbjct 1605 GALVTSNNKMQNAIVGIHVAGGAHA 1629 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Van Reokel] Sequence ID: Q6R325.1 Length: 2134 Range 1: 1438 to 1629 Score:42.4 bits(98), Expect:0.002, Method:Compositional matrix adjust., Identities:56/205(27%), Positives:86/205(41%), Gaps:18/205(8%) Query 7 ITNRVLTNLYKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIRNLFDVV 66 I+N V NL ++ + + L NGL V +L P H + D + I + Sbjct 1438 ISNVVHGNLVRVGVGPNEARIHWLYNGLGVYDTYILMPYHGIKDADVDDDLYIERAGTIY 1497 Query 67 FRVPWKDVKKVDVVNAFGESKEA--VLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTL 124 ++K V V+ F ES+E VL+ P+ + + D+ HF E++ + + TL Sbjct 1498 S----TNMKMVQVL--FLESREGDLVLINVPR-LPKFRDIRNHFSTEENIRRAEGMPGTL 1550 Query 125 PVLRYSDKMNRF-LATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMP--TTNGDCG 181 L + RF L T + VEA Y D + + G + T G CG Sbjct 1551 CTLDH----ERFTLVTESDLKMVEA--ATYVCEDDKGVRTDISVGRSWKAKACTVAGMCG 1604 Query 182 APLVINETQVIRKIAGIHVAGDARG 206 LV + ++ I GIHVAG A Sbjct 1605 GALVTSNNKMQNAIVGIHVAGGAHA 1629 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 2708 to 2850 Score:40.8 bits(94), Expect:0.006, Method:Compositional matrix adjust., Identities:38/147(26%), Positives:69/147(46%), Gaps:8/147(5%) Query 76 KVDVVNAFGESKEAVLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTLPVLRYS-DKMN 134 +V +VN F +E V+ V + + +++ +K L + +YS D M Sbjct 2708 RVCLVNGF---QETVVWDLGPSVPPSRNYIDFIANADDWKNYKATSGALVMSKYSVDSML 2764 Query 135 RFLATLIECDKVEA-YDRPYTLNDSSKGQYILRQGLEYTMPTTNGDCGAPLVINETQVIR 193 + + L + EA P + +++ G + + GL Y + G CG ++ + R Sbjct 2765 QCVHFLDSIELTEANVSVPTSYYEANGGIHTIISGLRYRVHCMPGFCGRAIMRADATCFR 2824 Query 194 KIAGIHVAGDARGK--AYAESISQKDL 218 KI G+HV+G R K YAE+++Q+ L Sbjct 2825 KIIGMHVSG-LRNKCMGYAETLTQEHL 2850 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 2752 to 2847 Score:40.8 bits(94), Expect:0.007, Method:Compositional matrix adjust., Identities:28/97(29%), Positives:53/97(54%), Gaps:12/97(12%) Query 133 MNRFLA-TLIEC----DKVEAYDR----PYTLNDSSKGQYILRQGLEYTMPTTNGDCGAP 183 M+++L ++++C D +E + P + +++ G + + GL Y + G CGA Sbjct 2752 MSKYLVDSMLQCVHFLDSIELTEANVSVPTSYYEANGGIHTIISGLRYRVHCMPGFCGAA 2811 Query 184 LVINETQVIRKIAGIHVAGDARGK--AYAESISQKDL 218 ++ + RKI G+HV+G R K YAE+++Q+ L Sbjct 2812 IMRADATCYRKIIGMHVSG-LRNKCMGYAETLTQEHL 2847 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain L2Z] Sequence ID: Q6WQ42.1 Length: 2134 Range 1: 1438 to 1627 Score:39.7 bits(91), Expect:0.014, Method:Compositional matrix adjust., Identities:55/203(27%), Positives:86/203(42%), Gaps:18/203(8%) Query 7 ITNRVLTNLYKICLVKENGDMVPLLNGLFVRSNIMLAPGHLVGFLSDSDTIEIRNLFDVV 66 I+N V NL ++ + + L NG V + +L P H + D + I + Sbjct 1438 ISNVVHGNLVRVGVGPNEARIHWLNNGWGVYNTYILMPYHGIKDADVDDDLYIERAGTIY 1497 Query 67 FRVPWKDVKKVDVVNAFGESKEA--VLLCFPKFVCQHTDLVKHFQDSESMSKFKRCEVTL 124 ++K V V+ F ES+E VL+ P+ + + D+ HF E++ + + TL Sbjct 1498 S----TNMKMVQVL--FLESREGDLVLINVPR-LPKFRDIRNHFSTEENIRRAEGMPGTL 1550 Query 125 PVLRYSDKMNRF-LATLIECDKVEAYDRPYTLNDSSKGQYILRQGLEYTMP--TTNGDCG 181 L + RF L T + VEA Y D + + G + T G CG Sbjct 1551 CTLDH----ERFTLVTESDLKMVEA--ATYVCEDDKGVRTDISVGRSWKAKACTVAGMCG 1604 Query 182 APLVINETQVIRKIAGIHVAGDA 204 LV + ++ I GIHVAG A Sbjct 1605 GALVTSNNKMQNAIVGIHVAGGA 1627