RID: 9ZGNAP3A016 Job Title:sp|P0C6W3|848-2784 Papain-like proteinase Program: BLASTP Query: sp|P0C6W3|848-2784 Papain-like proteinase ID: lcl|Query_37112(amino acid) Length: 1937 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Tylonycteris... NA 694007 4002 4002 100% 0.0 100.00 4434 P0C6T4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 3989 3989 100% 0.0 100.00 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat coronavi... NA 389230 3890 3890 100% 0.0 96.97 4441 P0C6F7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 3882 3882 100% 0.0 96.97 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Pipistrellus... NA 694008 2719 2719 99% 0.0 66.52 4481 P0C6T5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 2711 2711 99% 0.0 66.52 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Betacoronavi... NA 1263720 2278 2278 99% 0.0 58.70 4391 K9N638.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 2273 2273 99% 0.0 58.70 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName:... Bat CoV 279/... NA 389167 696 842 81% 0.0 33.22 4388 P0C6F5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 694 839 81% 0.0 33.22 7079 P0C6V9.1 Alignments: >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6T4.1 Length: 4434 Range 1: 848 to 2784 Score:4002 bits(10379), Expect:0.0, Method:Compositional matrix adjust., Identities:1937/1937(100%), Positives:1937/1937(100%), Gaps:0/1937(0%) Query 1 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 60 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK Sbjct 848 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 907 Query 61 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 120 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF Sbjct 908 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 967 Query 121 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA 180 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA Sbjct 968 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA 1027 Query 181 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN 240 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN Sbjct 1028 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN 1087 Query 241 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR 300 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR Sbjct 1088 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR 1147 Query 301 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG 360 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG Sbjct 1148 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG 1207 Query 361 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK 420 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK Sbjct 1208 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK 1267 Query 421 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFE 480 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFE Sbjct 1268 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFE 1327 Query 481 GWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDV 540 GWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDV Sbjct 1328 GWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDV 1387 Query 541 IAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTP 600 IAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTP Sbjct 1388 IAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTP 1447 Query 601 ETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF 660 ETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF Sbjct 1448 ETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF 1507 Query 661 SDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAF 720 SDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAF Sbjct 1508 SDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAF 1567 Query 721 PTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSL 780 PTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSL Sbjct 1568 PTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSL 1627 Query 781 KLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPD 840 KLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPD Sbjct 1628 KLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPD 1687 Query 841 DEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNE 900 DEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNE Sbjct 1688 DEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNE 1747 Query 901 TCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVK 960 TCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVK Sbjct 1748 TCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVK 1807 Query 961 DGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYM 1020 DGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYM Sbjct 1808 DGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYM 1867 Query 1021 KDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISK 1080 KDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISK Sbjct 1868 KDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISK 1927 Query 1081 KLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL 1140 KLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL Sbjct 1928 KLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL 1987 Query 1141 YDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLNKPFVKGNFSFV 1200 YDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLNKPFVKGNFSFV Sbjct 1988 YDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLNKPFVKGNFSFV 2047 Query 1201 NDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVT 1260 NDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVT Sbjct 2048 NDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVT 2107 Query 1261 RRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPF 1320 RRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPF Sbjct 2108 RRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPF 2167 Query 1321 NYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLC 1380 NYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLC Sbjct 2168 NYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLC 2227 Query 1381 TTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSF 1440 TTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSF Sbjct 2228 TTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSF 2287 Query 1441 DVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYT 1500 DVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYT Sbjct 2288 DVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYT 2347 Query 1501 SSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFL 1560 SSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFL Sbjct 2348 SSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFL 2407 Query 1561 RKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCV 1620 RKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCV Sbjct 2408 RKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCV 2467 Query 1621 ECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCY 1680 ECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCY Sbjct 2468 ECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCY 2527 Query 1681 ERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPM 1740 ERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPM Sbjct 2528 ERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPM 2587 Query 1741 LLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNV 1800 LLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNV Sbjct 2588 LLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNV 2647 Query 1801 LKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDL 1860 LKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDL Sbjct 2648 LKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDL 2707 Query 1861 GCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR 1920 GCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR Sbjct 2708 GCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR 2767 Query 1921 AADNILSVKFSATKIVG 1937 AADNILSVKFSATKIVG Sbjct 2768 AADNILSVKFSATKIVG 2784 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 848 to 2784 Score:3989 bits(10344), Expect:0.0, Method:Compositional matrix adjust., Identities:1937/1937(100%), Positives:1937/1937(100%), Gaps:0/1937(0%) Query 1 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 60 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK Sbjct 848 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 907 Query 61 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 120 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF Sbjct 908 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 967 Query 121 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA 180 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA Sbjct 968 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEVVETA 1027 Query 181 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN 240 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN Sbjct 1028 EAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGPVSDVTAIVTN 1087 Query 241 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR 300 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR Sbjct 1088 DIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQPRQDLKPRRSR 1147 Query 301 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG 360 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG Sbjct 1148 KSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASG 1207 Query 361 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK 420 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK Sbjct 1208 GDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNK 1267 Query 421 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFE 480 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFE Sbjct 1268 HTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFE 1327 Query 481 GWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDV 540 GWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDV Sbjct 1328 GWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDV 1387 Query 541 IAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTP 600 IAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTP Sbjct 1388 IAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTP 1447 Query 601 ETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF 660 ETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF Sbjct 1448 ETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF 1507 Query 661 SDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAF 720 SDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAF Sbjct 1508 SDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAF 1567 Query 721 PTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSL 780 PTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSL Sbjct 1568 PTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSL 1627 Query 781 KLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPD 840 KLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPD Sbjct 1628 KLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPD 1687 Query 841 DEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNE 900 DEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNE Sbjct 1688 DEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNE 1747 Query 901 TCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVK 960 TCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVK Sbjct 1748 TCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVK 1807 Query 961 DGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYM 1020 DGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYM Sbjct 1808 DGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYM 1867 Query 1021 KDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISK 1080 KDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISK Sbjct 1868 KDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISK 1927 Query 1081 KLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL 1140 KLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL Sbjct 1928 KLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQL 1987 Query 1141 YDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLNKPFVKGNFSFV 1200 YDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLNKPFVKGNFSFV Sbjct 1988 YDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLNKPFVKGNFSFV 2047 Query 1201 NDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVT 1260 NDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVT Sbjct 2048 NDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVT 2107 Query 1261 RRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPF 1320 RRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPF Sbjct 2108 RRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPF 2167 Query 1321 NYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLC 1380 NYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLC Sbjct 2168 NYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLC 2227 Query 1381 TTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSF 1440 TTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSF Sbjct 2228 TTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSF 2287 Query 1441 DVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYT 1500 DVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYT Sbjct 2288 DVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYT 2347 Query 1501 SSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFL 1560 SSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFL Sbjct 2348 SSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFL 2407 Query 1561 RKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCV 1620 RKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCV Sbjct 2408 RKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCV 2467 Query 1621 ECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCY 1680 ECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCY Sbjct 2468 ECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCY 2527 Query 1681 ERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPM 1740 ERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPM Sbjct 2528 ERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPM 2587 Query 1741 LLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNV 1800 LLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNV Sbjct 2588 LLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNV 2647 Query 1801 LKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDL 1860 LKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDL Sbjct 2648 LKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDL 2707 Query 1861 GCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR 1920 GCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR Sbjct 2708 GCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR 2767 Query 1921 AADNILSVKFSATKIVG 1937 AADNILSVKFSATKIVG Sbjct 2768 AADNILSVKFSATKIVG 2784 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6F7.1 Length: 4441 Range 1: 848 to 2791 Score:3890 bits(10089), Expect:0.0, Method:Compositional matrix adjust., Identities:1889/1948(97%), Positives:1910/1948(98%), Gaps:15/1948(0%) Query 1 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 60 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK Sbjct 848 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 907 Query 61 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 120 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF Sbjct 908 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 967 Query 121 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEV---- 176 IEDDYLSDELPIADDEEAW RAVEEVMPLDDILVAEIELEED PLETALESVEAEV Sbjct 968 IEDDYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEEDLPLETALESVEAEVGESI 1027 Query 177 ------VETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGP 230 VETA+AQEPSVES DSTPSTSTVV ENDLSVKPMSRVAET DVLE+ETAVVGGP Sbjct 1028 SDELCVVETAKAQEPSVESTDSTPSTSTVVSENDLSVKPMSRVAETGDVLEVETAVVGGP 1087 Query 231 VSDVTA-IVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQ 289 VSDVTA +VTNDIVSVEQAQQCGVSSLPIQDEASENQVHQV DLQ SETKVEIVQ Sbjct 1088 VSDVTASVVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVPDLQCT----SETKVEIVQ 1143 Query 290 PRQDLKPRRSRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGG 349 PRQDL+PRR RKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKC+LVNAANRHLKHGG Sbjct 1144 PRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGG 1203 Query 350 GIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAA 409 GIAG INKASGGDVQEESDEYISN+GPLHVGDSVLLKG+GLADAIL VVGPDARNNEDAA Sbjct 1204 GIAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAA 1263 Query 410 LLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATP 469 LLKRCYK FNKHTIVVTPLIS+GIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATP Sbjct 1264 LLKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATP 1323 Query 470 SKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYY 529 SKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYY Sbjct 1324 SKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYY 1383 Query 530 LYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIP 589 LYSARDALTDVIAAANGC GICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIP Sbjct 1384 LYSARDALTDVIAAANGCPGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIP 1443 Query 590 IMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKF 649 IMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKF Sbjct 1444 IMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKF 1503 Query 650 YVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGAT 709 YVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILND TTFRKQLGAT Sbjct 1504 YVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGAT 1563 Query 710 FYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQW 769 FYKGVDISDA PTVKMGGESLFVADNLSESE+VVLKEYYGTSDVTFLQRYYSLQPLVQQW Sbjct 1564 FYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQW 1623 Query 770 KFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIM 829 KFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIM Sbjct 1624 KFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIM 1683 Query 830 AYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVN 889 AYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVN Sbjct 1684 AYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVN 1743 Query 890 SMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVET 949 SMEELQSVFNETCVCGSVKHRQLVEHS PWLLVSGLNEVKVSTSTDP+YRAFNVFQGVET Sbjct 1744 SMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQGVET 1803 Query 950 SVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKV 1009 SVGHYVH+RVKDGLFYKYDSGSLTKTSDMKCKMTSVWYP VRYTADCNVVVYDLDGVTKV Sbjct 1804 SVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKV 1863 Query 1010 EVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDL 1069 EVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDL Sbjct 1864 EVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDL 1923 Query 1070 LGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSAL 1129 LGFDETKPISKKLTYSLLPNEDGDVLLSEF+NYNPVYKKGVMLKGKPILWVNNGVCDSAL Sbjct 1924 LGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSAL 1983 Query 1130 NKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLN 1189 NKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQL+E NVPVV+DV ITTRKLIEVKCKGLN Sbjct 1984 NKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLIEPNVPVVEDVSITTRKLIEVKCKGLN 2043 Query 1190 KPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGD 1249 KPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGD Sbjct 2044 KPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGD 2103 Query 1250 LQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMF 1309 LQIVA GGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGR FCKFVVNYGVLQNMF Sbjct 2104 LQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKFVVNYGVLQNMF 2163 Query 1310 VFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDW 1369 +FLKMLFFLPFNYLWPKKQPTVD+GVSGLRTAG+VTTNIVKQCGTAAYYMLLGKFKRVDW Sbjct 2164 LFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYYMLLGKFKRVDW 2223 Query 1370 KATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCD 1429 KATLRLFLLLCTTILLLSSIYHLV+FNQVLSSDVMLEDATGILA+YKEVRSYLGIRTLCD Sbjct 2224 KATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCD 2283 Query 1430 GLVVEYRNTSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFA 1489 GL VEYRNTSFDV++FCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFA Sbjct 2284 GLAVEYRNTSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFA 2343 Query 1490 LEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVR 1549 LEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVR Sbjct 2344 LEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVR 2403 Query 1550 VYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGT 1609 VYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGT Sbjct 2404 VYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGT 2463 Query 1610 SYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVE 1669 SYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVE Sbjct 2464 SYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVE 2523 Query 1670 LHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSAC 1729 LHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSAC Sbjct 2524 LHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSAC 2583 Query 1730 VYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARD 1789 VYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARD Sbjct 2584 VYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARD 2643 Query 1790 CVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGY 1849 CVRRGDDFQ VLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGY Sbjct 2644 CVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGY 2703 Query 1850 IKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCN 1909 IKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCN Sbjct 2704 IKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCN 2763 Query 1910 IPFRLTTSKLRAADNILSVKFSATKIVG 1937 IPFRLTTSKLRAADNILSVKFSATKIVG Sbjct 2764 IPFRLTTSKLRAADNILSVKFSATKIVG 2791 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 848 to 2791 Score:3882 bits(10067), Expect:0.0, Method:Compositional matrix adjust., Identities:1889/1948(97%), Positives:1910/1948(98%), Gaps:15/1948(0%) Query 1 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 60 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK Sbjct 848 MPSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIK 907 Query 61 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 120 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF Sbjct 908 DEVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEF 967 Query 121 IEDDYLSDELPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLETALESVEAEV---- 176 IEDDYLSDELPIADDEEAW RAVEEVMPLDDILVAEIELEED PLETALESVEAEV Sbjct 968 IEDDYLSDELPIADDEEAWTRAVEEVMPLDDILVAEIELEEDLPLETALESVEAEVGESI 1027 Query 177 ------VETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAVVGGP 230 VETA+AQEPSVES DSTPSTSTVV ENDLSVKPMSRVAET DVLE+ETAVVGGP Sbjct 1028 SDELCVVETAKAQEPSVESTDSTPSTSTVVSENDLSVKPMSRVAETGDVLEVETAVVGGP 1087 Query 231 VSDVTA-IVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVEIVQ 289 VSDVTA +VTNDIVSVEQAQQCGVSSLPIQDEASENQVHQV DLQ SETKVEIVQ Sbjct 1088 VSDVTASVVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVPDLQCT----SETKVEIVQ 1143 Query 290 PRQDLKPRRSRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGG 349 PRQDL+PRR RKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKC+LVNAANRHLKHGG Sbjct 1144 PRQDLRPRRLRKSKVDLSKYKHTVINNSVTLVLGDAIQIASLLPKCVLVNAANRHLKHGG 1203 Query 350 GIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAA 409 GIAG INKASGGDVQEESDEYISN+GPLHVGDSVLLKG+GLADAIL VVGPDARNNEDAA Sbjct 1204 GIAGAINKASGGDVQEESDEYISNSGPLHVGDSVLLKGYGLADAILRVVGPDARNNEDAA 1263 Query 410 LLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATP 469 LLKRCYK FNKHTIVVTPLIS+GIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATP Sbjct 1264 LLKRCYKTFNKHTIVVTPLISSGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYNTLATP 1323 Query 470 SKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYY 529 SKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYY Sbjct 1324 SKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVDGVSYY 1383 Query 530 LYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIP 589 LYSARDALTDVIAAANGC GICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIP Sbjct 1384 LYSARDALTDVIAAANGCPGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLASKEQIP 1443 Query 590 IMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKF 649 IMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKF Sbjct 1444 IMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICYADNKF 1503 Query 650 YVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRKQLGAT 709 YVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILND TTFRKQLGAT Sbjct 1504 YVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDATTFRKQLGAT 1563 Query 710 FYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQPLVQQW 769 FYKGVDISDA PTVKMGGESLFVADNLSESE+VVLKEYYGTSDVTFLQRYYSLQPLVQQW Sbjct 1564 FYKGVDISDALPTVKMGGESLFVADNLSESEEVVLKEYYGTSDVTFLQRYYSLQPLVQQW 1623 Query 770 KFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIM 829 KFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIM Sbjct 1624 KFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDFLALIM 1683 Query 830 AYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVN 889 AYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVN Sbjct 1684 AYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACVYAGVN 1743 Query 890 SMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLNEVKVSTSTDPIYRAFNVFQGVET 949 SMEELQSVFNETCVCGSVKHRQLVEHS PWLLVSGLNEVKVSTSTDP+YRAFNVFQGVET Sbjct 1744 SMEELQSVFNETCVCGSVKHRQLVEHSTPWLLVSGLNEVKVSTSTDPVYRAFNVFQGVET 1803 Query 950 SVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDLDGVTKV 1009 SVGHYVH+RVKDGLFYKYDSGSLTKTSDMKCKMTSVWYP VRYTADCNVVVYDLDGVTKV Sbjct 1804 SVGHYVHVRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPKVRYTADCNVVVYDLDGVTKV 1863 Query 1010 EVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDL 1069 EVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDL Sbjct 1864 EVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTISKFFNDL 1923 Query 1070 LGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNGVCDSAL 1129 LGFDETKPISKKLTYSLLPNEDGDVLLSEF+NYNPVYKKGVMLKGKPILWVNNGVCDSAL Sbjct 1924 LGFDETKPISKKLTYSLLPNEDGDVLLSEFNNYNPVYKKGVMLKGKPILWVNNGVCDSAL 1983 Query 1130 NKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEVKCKGLN 1189 NKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQL+E NVPVV+DV ITTRKLIEVKCKGLN Sbjct 1984 NKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLIEPNVPVVEDVSITTRKLIEVKCKGLN 2043 Query 1190 KPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGD 1249 KPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGD Sbjct 2044 KPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGD 2103 Query 1250 LQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMF 1309 LQIVA GGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGR FCKFVVNYGVLQNMF Sbjct 2104 LQIVANGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRSFCKFVVNYGVLQNMF 2163 Query 1310 VFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDW 1369 +FLKMLFFLPFNYLWPKKQPTVD+GVSGLRTAG+VTTNIVKQCGTAAYYMLLGKFKRVDW Sbjct 2164 LFLKMLFFLPFNYLWPKKQPTVDVGVSGLRTAGVVTTNIVKQCGTAAYYMLLGKFKRVDW 2223 Query 1370 KATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCD 1429 KATLRLFLLLCTTILLLSSIYHLV+FNQVLSSDVMLEDATGILA+YKEVRSYLGIRTLCD Sbjct 2224 KATLRLFLLLCTTILLLSSIYHLVIFNQVLSSDVMLEDATGILAMYKEVRSYLGIRTLCD 2283 Query 1430 GLVVEYRNTSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFA 1489 GL VEYRNTSFDV++FCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFA Sbjct 2284 GLAVEYRNTSFDVVDFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFA 2343 Query 1490 LEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVR 1549 LEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVR Sbjct 2344 LEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVR 2403 Query 1550 VYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGT 1609 VYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGT Sbjct 2404 VYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGT 2463 Query 1610 SYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVE 1669 SYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVE Sbjct 2464 SYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVE 2523 Query 1670 LHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSAC 1729 LHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSAC Sbjct 2524 LHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSAC 2583 Query 1730 VYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARD 1789 VYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARD Sbjct 2584 VYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARD 2643 Query 1790 CVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGY 1849 CVRRGDDFQ VLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGY Sbjct 2644 CVRRGDDFQTVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGY 2703 Query 1850 IKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCN 1909 IKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCN Sbjct 2704 IKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCN 2763 Query 1910 IPFRLTTSKLRAADNILSVKFSATKIVG 1937 IPFRLTTSKLRAADNILSVKFSATKIVG Sbjct 2764 IPFRLTTSKLRAADNILSVKFSATKIVG 2791 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6T5.1 Length: 4481 Range 1: 853 to 2830 Score:2719 bits(7049), Expect:0.0, Method:Compositional matrix adjust., Identities:1319/1983(67%), Positives:1593/1983(80%), Gaps:52/1983(2%) Query 2 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 61 P K V FG T E+TA RSVS+ YD+HPVLDALL+ S+LATFTVEKDL V+DFVDV+KD Sbjct 853 PPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKD 912 Query 62 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEV--EE 119 EV+ LL+ LLRGY++DGFD+EDF D PCYVYN +GD AWSS MTFS+NPVE+VEE ++ Sbjct 913 EVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDD 972 Query 120 FIEDDYLSDELPIADDEEAWARAVEEVMPLDDI----LVAEIELEE---DPPLETALESV 172 ++ED+YLS+E+ + +DE +WA AVE V+P++D+ LVAEI++ E D + + E V Sbjct 973 YVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEEV 1032 Query 173 E---AEVVETAE-AQEPSVESIDSTPSTSTVVGENDLSVKP------MSRVAETDDVLEL 222 E A V+E ++ A VES ++ S+S + E+ + K M + T+ V +L Sbjct 1033 EVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSKL 1092 Query 223 ETAVVGGPVSDVT---------AIVTNDIVSVEQAQQCGVSSLP--IQDEASENQVHQVS 271 V PV DVT +++ D+ + ++ G+ ++P + ++A V ++ Sbjct 1093 S---VDTPVGDVTQDDATSSNATVISEDVHTATHSK--GLVAVPEVVPEKALGTSVERMR 1147 Query 272 DLQGNELLCSETKVE---IVQPRQDLKPRRSRKSKVD--LSKYKHTVINNSVTLVLGDAI 326 ++ + K E IV+ KP+R +K K + L +KH V+NN VTLV GDAI Sbjct 1148 STSEWTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAI 1207 Query 327 QIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLK 386 +A CILVNAAN HLKHGGGIA I++ASGG VQ ESD+Y++ GPL+VGDS LLK Sbjct 1208 AVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLK 1267 Query 387 GHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLL 446 GHGLA ILHVVGPDAR N+D LLKRCYKAFNK+ +VV+PLISAGIF V+P+VS EYLL Sbjct 1268 GHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLL 1327 Query 447 ANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANV 506 + V T TYVVVN+E +YN LA P P GL YS EGWRG +R AK++GFTCFICT+ SAN Sbjct 1328 SVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANA 1387 Query 507 KFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQ 566 K L+ +GVD TKK QTVDGV YYLYS++D LTD+I AAN C GICAMP GYVTHGLDLAQ Sbjct 1388 KLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQ 1447 Query 567 SGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIV 626 +G V+++ VPYVCLLASK+Q+PI+NSDVA+QTPE +FIN V +NGGYH WHLV+G+LIV Sbjct 1448 AGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIV 1507 Query 627 KDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTI 686 K V Y+KLL+WS QTICYADNKFYVVK +ALPF LE CR YLTSRAAQQ N++VLVTI Sbjct 1508 KGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTI 1567 Query 687 DGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKE 746 DGVNFRTV+LN+TTT+R QLG+ FYKG DISD PT KM GE++++ADNLSE+EK VL E Sbjct 1568 DGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSE 1627 Query 747 YYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVV 806 YGT+D FL RYYSL LV++WK+ VHDGVKSLKL++ NCY+N T++M+DML +IKF+V Sbjct 1628 VYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIV 1687 Query 807 PALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREW 866 PALQ AYL++KGGD +F+ALIMAYGDCT+ PDD ++LLHT+L+KAELT AKMVWR+W Sbjct 1688 PALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQW 1747 Query 867 CTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLN 926 C VCG++D TG++AC+Y G+NS++EL + E C CG V+ RQLVEH+APWLL+SGLN Sbjct 1748 CNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLN 1807 Query 927 EVKVSTSTD----PIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKM 982 E KV T T P Y AFNVFQGVETSVGHY+H+RVKD L YKYDSGSL+KTSDMKCKM Sbjct 1808 EAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKM 1867 Query 983 TSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPG 1042 T V+YP RY+ADCNVVVY LDG T +V+PDLS +YMKDGKY+T KP I+YSPATIL G Sbjct 1868 TDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSG 1927 Query 1043 SVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNY 1102 SVY+NSCLVG DGT GSD IS FN+LLGFD +KP+SKKLTYS P+ +GDV+L+E+S Y Sbjct 1928 SVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTY 1987 Query 1103 NPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQL 1162 +P+YK G ML GKPILWVNN DSALNK NRA+LRQ+YD+AP+ L+NKYTVLQDN Q Sbjct 1988 DPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQ 2047 Query 1163 VEHNVPVVDDVPITTRKLIE--------VKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGL 1214 VE P D P + ++ E +KCKGL KPFVK +SFVNDP GV V+DTLG+ Sbjct 2048 VEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGI 2107 Query 1215 TELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFA 1274 +LRALYVD N R IVL++NNWS+LF +HTVE GDL ++AA GS+TRR ++LLGASSLFA Sbjct 2108 DDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFA 2167 Query 1275 SFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIG 1334 FA +TV TTA K GR + N G++ F LKML LPF + K Q TV + Sbjct 2168 QFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVE 2227 Query 1335 VSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVL 1394 V LRTAGIVTTN+VKQC +AAY +L+ KFKR+DWK+TLRL L+CTT LLLSS+Y+L L Sbjct 2228 VGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFL 2287 Query 1395 FNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQ 1454 F+QVL+SDVML+ A G+LA Y+E+RSYLGI +LCDG+V YRN S+DV +FCSNRS LC Sbjct 2288 FHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCN 2347 Query 1455 WCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQY 1514 WCLIGQDSLTRYSA QM+QTH+TSYV+NIDW+WF +EF LAYVLYTS+FNVLLLVV++QY Sbjct 2348 WCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQY 2407 Query 1515 FFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDT 1574 FF+YT AFVNWR+YNY+VSG FF VTHIPL GLVR+YNFLACLWFLR+FY+HVINGCKDT Sbjct 2408 FFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDT 2467 Query 1575 ACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICT 1634 ACLLCYKRNRLTRVEAST+VCG+KRTFYI ANGGTS+CC+HNWNCV+CDTAG+GNTFIC Sbjct 2468 ACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICE 2527 Query 1635 EVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKL 1694 EVANDLTT+LRRL+KPTD+SHYYV+SV VKD+VV+LHY+R+G+SCYERYPLCYFTNL+KL Sbjct 2528 EVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKL 2587 Query 1695 KFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDS 1754 KFKEVCKTPTGIPEHNFLIYD++DRGQENLARSACVYYSQVL KPMLLVD N+VTTVGDS Sbjct 2588 KFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDS 2647 Query 1755 REIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGV 1814 REIA KMLDS++NSFISLF V+RDKL+KL+ TARDCV+RGDDFQ V+KTFTDAARG AGV Sbjct 2648 REIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGV 2707 Query 1815 ESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQT 1874 ESDVET+ +VDALQYA+K+D+QLTTE +NNYVP YIKPDS+ T DLGCLIDL AASVNQT Sbjct 2708 ESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQT 2767 Query 1875 SMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 1934 S+RNANGAC+WNS DYMKLSDS KRQIRIACRKCNIPFRLTTS+LR+ADNILSVKFSATK Sbjct 2768 SIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATK 2827 Query 1935 IVG 1937 + G Sbjct 2828 LSG 2830 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 853 to 2830 Score:2711 bits(7027), Expect:0.0, Method:Compositional matrix adjust., Identities:1319/1983(67%), Positives:1593/1983(80%), Gaps:52/1983(2%) Query 2 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 61 P K V FG T E+TA RSVS+ YD+HPVLDALL+ S+LATFTVEKDL V+DFVDV+KD Sbjct 853 PPKGVKFGGEQTKEITAVRSVSVDYDVHPVLDALLAGSELATFTVEKDLPVKDFVDVVKD 912 Query 62 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEV--EE 119 EV+ LL+ LLRGY++DGFD+EDF D PCYVYN +GD AWSS MTFS+NPVE+VEE ++ Sbjct 913 EVIELLSKLLRGYNVDGFDLEDFADTPCYVYNAEGDLAWSSTMTFSVNPVEEVEEECDDD 972 Query 120 FIEDDYLSDELPIADDEEAWARAVEEVMPLDDI----LVAEIELEE---DPPLETALESV 172 ++ED+YLS+E+ + +DE +WA AVE V+P++D+ LVAEI++ E D + + E V Sbjct 973 YVEDEYLSEEMLVEEDENSWAAAVEAVIPMEDVQLDTLVAEIDVSEPADDVAEQASTEEV 1032 Query 173 E---AEVVETAE-AQEPSVESIDSTPSTSTVVGENDLSVKP------MSRVAETDDVLEL 222 E A V+E ++ A VES ++ S+S + E+ + K M + T+ V +L Sbjct 1033 EVPSACVLEASQVANAAEVESCEAEVSSSIPLHEDANAAKANDCAEGMPALDSTETVSKL 1092 Query 223 ETAVVGGPVSDVT---------AIVTNDIVSVEQAQQCGVSSLP--IQDEASENQVHQVS 271 V PV DVT +++ D+ + ++ G+ ++P + ++A V ++ Sbjct 1093 S---VDTPVGDVTQDDATSSNATVISEDVHTATHSK--GLVAVPEVVPEKALGTSVERMR 1147 Query 272 DLQGNELLCSETKVE---IVQPRQDLKPRRSRKSKVD--LSKYKHTVINNSVTLVLGDAI 326 ++ + K E IV+ KP+R +K K + L +KH V+NN VTLV GDAI Sbjct 1148 STSEWTVVETSLKQETAVIVKNDSSAKPQRVKKPKAENPLKNFKHIVLNNDVTLVFGDAI 1207 Query 327 QIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLK 386 +A CILVNAAN HLKHGGGIA I++ASGG VQ ESD+Y++ GPL+VGDS LLK Sbjct 1208 AVARATEDCILVNAANTHLKHGGGIAAAIDRASGGLVQAESDDYVNFYGPLNVGDSTLLK 1267 Query 387 GHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLL 446 GHGLA ILHVVGPDAR N+D LLKRCYKAFNK+ +VV+PLISAGIF V+P+VS EYLL Sbjct 1268 GHGLATGILHVVGPDARANQDIQLLKRCYKAFNKYPLVVSPLISAGIFCVEPRVSLEYLL 1327 Query 447 ANVTTTTYVVVNNEDIYNTLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANV 506 + V T TYVVVN+E +YN LA P P GL YS EGWRG +R AK++GFTCFICT+ SAN Sbjct 1328 SVVHTKTYVVVNSEKVYNDLAAPKPPTGLTYSHEGWRGIIRNAKSFGFTCFICTDQSANA 1387 Query 507 KFLRTKGVDTTKKIQTVDGVSYYLYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQ 566 K L+ +GVD TKK QTVDGV YYLYS++D LTD+I AAN C GICAMP GYVTHGLDLAQ Sbjct 1388 KLLKGRGVDLTKKTQTVDGVKYYLYSSKDPLTDIITAANACKGICAMPIGYVTHGLDLAQ 1447 Query 567 SGNYVRQVKVPYVCLLASKEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIV 626 +G V+++ VPYVCLLASK+Q+PI+NSDVA+QTPE +FIN V +NGGYH WHLV+G+LIV Sbjct 1448 AGQQVKKITVPYVCLLASKDQVPILNSDVAVQTPEQSFINTVIANGGYHCWHLVTGELIV 1507 Query 627 KDVCYKKLLHWSGQTICYADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTI 686 K V Y+KLL+WS QTICYADNKFYVVK +ALPF LE CR YLTSRAAQQ N++VLVTI Sbjct 1508 KGVSYRKLLNWSDQTICYADNKFYVVKGQIALPFDSLEKCRTYLTSRAAQQKNVDVLVTI 1567 Query 687 DGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKE 746 DGVNFRTV+LN+TTT+R QLG+ FYKG DISD PT KM GE++++ADNLSE+EK VL E Sbjct 1568 DGVNFRTVVLNNTTTYRVQLGSVFYKGSDISDTIPTEKMSGEAVYLADNLSEAEKAVLSE 1627 Query 747 YYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVV 806 YGT+D FL RYYSL LV++WK+ VHDGVKSLKL++ NCY+N T++M+DML +IKF+V Sbjct 1628 VYGTADTAFLHRYYSLLALVKKWKYTVHDGVKSLKLNSNNCYVNVTMLMLDMLKEIKFIV 1687 Query 807 PALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREW 866 PALQ AYL++KGGD +F+ALIMAYGDCT+ PDD ++LLHT+L+KAELT AKMVWR+W Sbjct 1688 PALQAAYLKHKGGDSTEFIALIMAYGDCTYGEPDDASRLLHTILSKAELTTQAKMVWRQW 1747 Query 867 CTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGLN 926 C VCG++D TG++AC+Y G+NS++EL + E C CG V+ RQLVEH+APWLL+SGLN Sbjct 1748 CNVCGVQDTTTTGLKACIYVGMNSLDELHATHEECCQCGDVRKRQLVEHNAPWLLLSGLN 1807 Query 927 EVKVSTSTD----PIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKM 982 E KV T T P Y AFNVFQGVETSVGHY+H+RVKD L YKYDSGSL+KTSDMKCKM Sbjct 1808 EAKVMTPTSQSAGPDYTAFNVFQGVETSVGHYLHVRVKDNLLYKYDSGSLSKTSDMKCKM 1867 Query 983 TSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPG 1042 T V+YP RY+ADCNVVVY LDG T +V+PDLS +YMKDGKY+T KP I+YSPATIL G Sbjct 1868 TDVYYPKQRYSADCNVVVYSLDGNTWADVDPDLSAFYMKDGKYFTKKPVIEYSPATILSG 1927 Query 1043 SVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNY 1102 SVY+NSCLVG DGT GSD IS FN+LLGFD +KP+SKKLTYS P+ +GDV+L+E+S Y Sbjct 1928 SVYTNSCLVGHDGTIGSDAISSSFNNLLGFDNSKPVSKKLTYSFFPDFEGDVILTEYSTY 1987 Query 1103 NPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQL 1162 +P+YK G ML GKPILWVNN DSALNK NRA+LRQ+YD+AP+ L+NKYTVLQDN Q Sbjct 1988 DPIYKNGAMLHGKPILWVNNSKFDSALNKFNRATLRQVYDIAPVTLENKYTVLQDNQIQQ 2047 Query 1163 VEHNVPVVDDVPITTRKLIE--------VKCKGLNKPFVKGNFSFVNDPNGVTVVDTLGL 1214 VE P D P + ++ E +KCKGL KPFVK +SFVNDP GV V+DTLG+ Sbjct 2048 VEVEAPKEDAKPQSPVQVAEDIDNKLPIIKCKGLKKPFVKDGYSFVNDPQGVNVIDTLGI 2107 Query 1215 TELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLFA 1274 +LRALYVD N R IVL++NNWS+LF +HTVE GDL ++AA GS+TRR ++LLGASSLFA Sbjct 2108 DDLRALYVDRNLRLIVLKENNWSALFNIHTVEKGDLSVIAASGSITRRVKILLGASSLFA 2167 Query 1275 SFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDIG 1334 FA +TV TTA K GR + N G++ F LKML LPF + K Q TV + Sbjct 2168 QFASVTVNVTTAMGKALGRMTRNVITNTGIIGQGFALLKMLLILPFTFWKSKNQSTVKVE 2227 Query 1335 VSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLVL 1394 V LRTAGIVTTN+VKQC +AAY +L+ KFKR+DWK+TLRL L+CTT LLLSS+Y+L L Sbjct 2228 VGALRTAGIVTTNVVKQCASAAYDVLVVKFKRIDWKSTLRLLFLICTTGLLLSSLYYLFL 2287 Query 1395 FNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQ 1454 F+QVL+SDVML+ A G+LA Y+E+RSYLGI +LCDG+V YRN S+DV +FCSNRS LC Sbjct 2288 FHQVLTSDVMLDGAEGMLATYRELRSYLGIHSLCDGMVEAYRNVSYDVNDFCSNRSALCN 2347 Query 1455 WCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTAQY 1514 WCLIGQDSLTRYSA QM+QTH+TSYV+NIDW+WF +EF LAYVLYTS+FNVLLLVV++QY Sbjct 2348 WCLIGQDSLTRYSAFQMIQTHVTSYVINIDWVWFVMEFALAYVLYTSTFNVLLLVVSSQY 2407 Query 1515 FFAYTSAFVNWRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVINGCKDT 1574 FF+YT AFVNWR+YNY+VSG FF VTHIPL GLVR+YNFLACLWFLR+FY+HVINGCKDT Sbjct 2408 FFSYTGAFVNWRSYNYLVSGYFFCVTHIPLLGLVRIYNFLACLWFLRRFYNHVINGCKDT 2467 Query 1575 ACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGNTFICT 1634 ACLLCYKRNRLTRVEAST+VCG+KRTFYI ANGGTS+CC+HNWNCV+CDTAG+GNTFIC Sbjct 2468 ACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTSFCCRHNWNCVDCDTAGIGNTFICE 2527 Query 1635 EVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFTNLEKL 1694 EVANDLTT+LRRL+KPTD+SHYYV+SV VKD+VV+LHY+R+G+SCYERYPLCYFTNL+KL Sbjct 2528 EVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLHYSREGASCYERYPLCYFTNLDKL 2587 Query 1695 KFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDS 1754 KFKEVCKTPTGIPEHNFLIYD++DRGQENLARSACVYYSQVL KPMLLVD N+VTTVGDS Sbjct 2588 KFKEVCKTPTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDS 2647 Query 1755 REIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAARGHAGV 1814 REIA KMLDS++NSFISLF V+RDKL+KL+ TARDCV+RGDDFQ V+KTFTDAARG AGV Sbjct 2648 REIASKMLDSYVNSFISLFGVNRDKLDKLVATARDCVKRGDDFQTVIKTFTDAARGPAGV 2707 Query 1815 ESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAASVNQT 1874 ESDVET+ +VDALQYA+K+D+QLTTE +NNYVP YIKPDS+ T DLGCLIDL AASVNQT Sbjct 2708 ESDVETSSIVDALQYAYKHDLQLTTEGFNNYVPSYIKPDSVATADLGCLIDLNAASVNQT 2767 Query 1875 SMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVKFSATK 1934 S+RNANGAC+WNS DYMKLSDS KRQIRIACRKCNIPFRLTTS+LR+ADNILSVKFSATK Sbjct 2768 SIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLRSADNILSVKFSATK 2827 Query 1935 IVG 1937 + G Sbjct 2828 LSG 2830 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Betacoronavirus England 1] Sequence ID: K9N638.1 Length: 4391 Range 1: 855 to 2739 Score:2278 bits(5904), Expect:0.0, Method:Compositional matrix adjust., Identities:1147/1954(59%), Positives:1395/1954(71%), Gaps:87/1954(4%) Query 2 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 61 P KKV FG EV A RSV++ Y+IH VLD LL+SS L TF V+K L +E+F DV+K+ Sbjct 855 PVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKE 914 Query 62 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFI 121 +V LL LLRG I FD++DFID PCY +N +GD +WSS M FS++PVE EE E Sbjct 915 QVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVE 974 Query 122 EDDYLSDE---------------LPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLE 166 D E I+DDE WA AV+E PLD+ Sbjct 975 ASDLEEGESECISETSTEQVDVSHEISDDE--WAAAVDEAFPLDEA-------------- 1018 Query 167 TALESVEAEVVETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAV 226 E V V E A+ E VE I + VV + L P+ D +E+ V Sbjct 1019 ---EDVTESVQEEAQPVEVPVEDI------AQVVIADTLQETPV-----VSDTVEVPPQV 1064 Query 227 VGGPVSDVTAIVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVE 286 V P S Q Q V + EA Q V+ Sbjct 1065 VKLP-------------SEPQTIQPEVKEVAPVYEADTEQTQSVT--------------- 1096 Query 287 IVQPRQDLKPRRSRKSK-VD-LSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRH 344 +KP+R RK + VD LS ++H VI VT+VLGDAIQ+A + +LVNAAN H Sbjct 1097 -------VKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTH 1149 Query 345 LKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARN 404 LKHGGGIAG IN AS G VQ+ESDEYI GPL VGDSVLL+GH LA ILHVVGPDAR Sbjct 1150 LKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARA 1209 Query 405 NEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYN 464 +D +LL +CYKA N + +VVTPL+SAGIF V P VSF+YL+ T VVVN++D+Y Sbjct 1210 KQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYK 1269 Query 465 TLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD 524 +L P L +S++G RG +R AK+YGFT F+CT+ SAN K LR KGVD TKK TVD Sbjct 1270 SLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD 1329 Query 525 GVSYYLYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLAS 584 GV YY Y+++D L D++ AN GI +MP GYV+HGLDL Q+G+ VR+V VPYVCLLA+ Sbjct 1330 GVQYYCYTSKDTLDDILQQANKSVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLAN 1389 Query 585 KEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICY 644 KEQ I+ S+ P FI +V +NGGY+SWHLV G+L+V+D+ KLLHWS QTICY Sbjct 1390 KEQEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQTICY 1449 Query 645 ADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRK 704 D+ FYVVKN A PF L ACRAYL SR QQ+ IEVLVT+DGVNFRTV+LN+ T+R Sbjct 1450 KDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRS 1509 Query 705 QLGATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQP 764 QLG F+ G DISD P K G SL++ADNL+ E LKE YG D TFL R+YSL+ Sbjct 1510 QLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYSLKA 1569 Query 765 LVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDF 824 V +WK VV D V+SLKLS+ NCY+NA IM +D+L DIKFV+PALQ+A++++KGGD DF Sbjct 1570 AVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDF 1629 Query 825 LALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACV 884 +ALIMAYG+CTF PDD ++LLHT+LAKAEL SA+MVWREWC VCGI+D+ G++AC Sbjct 1630 IALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACC 1689 Query 885 YAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGL-NEVKVSTSTDPIYRAFNV 943 Y GV ++E+L++ C CG +HRQ+VEH+ PWLL+SG NE V+TST P + AFNV Sbjct 1690 YVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVAFNV 1749 Query 944 FQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDL 1003 FQG+ET+VGHYVH R+K GL K+DSG+++KTSD KCK+T V +P +Y++DCNVV Y L Sbjct 1750 FQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVRYSL 1809 Query 1004 DGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTIS 1063 DG + EV+PDLS +Y+KDGKY+TS+P + YSPATIL GSVY+NSCLV DG PG D IS Sbjct 1810 DGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGDAIS 1869 Query 1064 KFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNG 1123 FN+LLGFD +KP++KK TYS LP EDGDVLL+EF Y+P+YK G M KGKPILWVN Sbjct 1870 LSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILWVNKA 1929 Query 1124 VCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEV 1183 D+ LNK NRASLRQ++DVAPI L+NK+T L ++ + P VD V + I V Sbjct 1930 SYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTPV---EPPTVDVVALQQEMTI-V 1985 Query 1184 KCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLH 1243 KCKGLNKPFVK N SFV D +G VV+ L +L LYVD + IVL+DN SS+ +LH Sbjct 1986 KCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLH 2045 Query 1244 TVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYG 1303 TVESGD+ +VAA GS+TR+ ++L AS F FA T TATTA V G Sbjct 2046 TVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCIKSVVRHLGVTKG 2105 Query 1304 VLQNMFVFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGK 1363 +L F F+KMLF LP Y K T ++ VS L+TAG+VT N+VKQC TAA + + K Sbjct 2106 ILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDK 2165 Query 1364 FKRVDWKATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLG 1423 +RVDWK+TLRL L+LCTT++LLSS+YHL +FNQVLSSDVM EDA G+ YKEVR+YLG Sbjct 2166 LRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLG 2225 Query 1424 IRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNI 1483 I + CDGL YR SFDV FC+NRS +C WCLI QDS+T Y AL+M+QTH++ YVLNI Sbjct 2226 ISSACDGLASAYRANSFDVPTFCANRSAMCNWCLISQDSITHYPALKMVQTHLSHYVLNI 2285 Query 1484 DWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIP 1543 DW+WFA E LAY+LYTS+FN LLL T YFFA TS FV+WR+YNY VS F+L THIP Sbjct 2286 DWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHIP 2345 Query 1544 LHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYI 1603 + GLVR+YN LACLW LRKFY HVINGCKDTACLLCYKRNRLTRVEAST+VCG KRTFYI Sbjct 2346 MAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYI 2405 Query 1604 AANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVV 1663 ANGG S+C +HNWNCV+CDTAGVGNTFIC EVANDLTT LRR I TD+SHYYVDSV V Sbjct 2406 TANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTV 2465 Query 1664 KDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQEN 1723 K+ VV+ +Y RDG YER+PLC FTNL+KLKFKEVCKT TGIPE+NF+IYD++DRGQE+ Sbjct 2466 KETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQES 2525 Query 1724 LARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKL 1783 LARSACVYYSQVLCK +LLVD +LVT+VGDS EIA KM DSF+NSF+SL++V+RDKLEKL Sbjct 2526 LARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKL 2585 Query 1784 INTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYN 1843 I+TARD VRRGD+F +VL TF DAARG AGVESDVET +VD++QYAHK+DIQ+T E YN Sbjct 2586 ISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYAHKHDIQITNESYN 2645 Query 1844 NYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRI 1903 NYVP Y+KPDS++T DLG LID AASVNQ +RN+NGAC+WN+ YMKLSD+ KRQIRI Sbjct 2646 NYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRI 2705 Query 1904 ACRKCNIPFRLTTSKLRAADNILSVKFSATKIVG 1937 ACRKCN+ FRLTTSKLRA DNILSV+F+A KIVG Sbjct 2706 ACRKCNLAFRLTTSKLRANDNILSVRFTANKIVG 2739 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 855 to 2739 Score:2273 bits(5890), Expect:0.0, Method:Compositional matrix adjust., Identities:1147/1954(59%), Positives:1395/1954(71%), Gaps:87/1954(4%) Query 2 PSKKVTFGDVNTVEVTAYRSVSITYDIHPVLDALLSSSKLATFTVEKDLLVEDFVDVIKD 61 P KKV FG EV A RSV++ Y+IH VLD LL+SS L TF V+K L +E+F DV+K+ Sbjct 855 PVKKVAFGGDQVHEVAAVRSVTVEYNIHAVLDTLLASSSLRTFVVDKSLSIEEFADVVKE 914 Query 62 EVLTLLTPLLRGYDIDGFDVEDFIDVPCYVYNQDGDCAWSSNMTFSINPVEDVEEVEEFI 121 +V LL LLRG I FD++DFID PCY +N +GD +WSS M FS++PVE EE E Sbjct 915 QVSDLLVKLLRGMPIPDFDLDDFIDAPCYCFNAEGDASWSSTMIFSLHPVECDEECSEVE 974 Query 122 EDDYLSDE---------------LPIADDEEAWARAVEEVMPLDDILVAEIELEEDPPLE 166 D E I+DDE WA AV+E PLD+ Sbjct 975 ASDLEEGESECISETSTEQVDVSHEISDDE--WAAAVDEAFPLDEA-------------- 1018 Query 167 TALESVEAEVVETAEAQEPSVESIDSTPSTSTVVGENDLSVKPMSRVAETDDVLELETAV 226 E V V E A+ E VE I + VV + L P+ D +E+ V Sbjct 1019 ---EDVTESVQEEAQPVEVPVEDI------AQVVIADTLQETPV-----VSDTVEVPPQV 1064 Query 227 VGGPVSDVTAIVTNDIVSVEQAQQCGVSSLPIQDEASENQVHQVSDLQGNELLCSETKVE 286 V P S Q Q V + EA Q V+ Sbjct 1065 VKLP-------------SEPQTIQPEVKEVAPVYEADTEQTQSVT--------------- 1096 Query 287 IVQPRQDLKPRRSRKSK-VD-LSKYKHTVINNSVTLVLGDAIQIASLLPKCILVNAANRH 344 +KP+R RK + VD LS ++H VI VT+VLGDAIQ+A + +LVNAAN H Sbjct 1097 -------VKPKRLRKKRNVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTH 1149 Query 345 LKHGGGIAGVINKASGGDVQEESDEYISNNGPLHVGDSVLLKGHGLADAILHVVGPDARN 404 LKHGGGIAG IN AS G VQ+ESDEYI GPL VGDSVLL+GH LA ILHVVGPDAR Sbjct 1150 LKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARA 1209 Query 405 NEDAALLKRCYKAFNKHTIVVTPLISAGIFSVDPKVSFEYLLANVTTTTYVVVNNEDIYN 464 +D +LL +CYKA N + +VVTPL+SAGIF V P VSF+YL+ T VVVN++D+Y Sbjct 1210 KQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYK 1269 Query 465 TLATPSKPDGLVYSFEGWRGTVRTAKNYGFTCFICTEYSANVKFLRTKGVDTTKKIQTVD 524 +L P L +S++G RG +R AK+YGFT F+CT+ SAN K LR KGVD TKK TVD Sbjct 1270 SLTIVDIPQSLTFSYDGLRGAIRKAKDYGFTVFVCTDNSANTKVLRNKGVDYTKKFLTVD 1329 Query 525 GVSYYLYSARDALTDVIAAANGCSGICAMPFGYVTHGLDLAQSGNYVRQVKVPYVCLLAS 584 GV YY Y+++D L D++ AN GI +MP GYV+HGLDL Q+G+ VR+V VPYVCLLA+ Sbjct 1330 GVQYYCYTSKDTLDDILQQANKSVGIISMPLGYVSHGLDLIQAGSVVRRVNVPYVCLLAN 1389 Query 585 KEQIPIMNSDVAIQTPETAFINNVTSNGGYHSWHLVSGDLIVKDVCYKKLLHWSGQTICY 644 KEQ I+ S+ P FI +V +NGGY+SWHLV G+L+V+D+ KLLHWS QTICY Sbjct 1390 KEQEAILMSEDVKLNPSEDFIKHVRTNGGYNSWHLVEGELLVQDLRLNKLLHWSDQTICY 1449 Query 645 ADNKFYVVKNDVALPFSDLEACRAYLTSRAAQQVNIEVLVTIDGVNFRTVILNDTTTFRK 704 D+ FYVVKN A PF L ACRAYL SR QQ+ IEVLVT+DGVNFRTV+LN+ T+R Sbjct 1450 KDSVFYVVKNSTAFPFETLSACRAYLDSRTTQQLTIEVLVTVDGVNFRTVVLNNKNTYRS 1509 Query 705 QLGATFYKGVDISDAFPTVKMGGESLFVADNLSESEKVVLKEYYGTSDVTFLQRYYSLQP 764 QLG F+ G DISD P K G SL++ADNL+ E LKE YG D TFL R+YSL+ Sbjct 1510 QLGCVFFNGADISDTIPDEKQNGHSLYLADNLTADETKALKELYGPVDPTFLHRFYSLKA 1569 Query 765 LVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHDIKFVVPALQNAYLRYKGGDPYDF 824 V +WK VV D V+SLKLS+ NCY+NA IM +D+L DIKFV+PALQ+A++++KGGD DF Sbjct 1570 AVHKWKMVVCDKVRSLKLSDNNCYLNAVIMTLDLLKDIKFVIPALQHAFMKHKGGDSTDF 1629 Query 825 LALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIRDIEYTGMRACV 884 +ALIMAYG+CTF PDD ++LLHT+LAKAEL SA+MVWREWC VCGI+D+ G++AC Sbjct 1630 IALIMAYGNCTFGAPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIKDVVLQGLKACC 1689 Query 885 YAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLLVSGL-NEVKVSTSTDPIYRAFNV 943 Y GV ++E+L++ C CG +HRQ+VEH+ PWLL+SG NE V+TST P + AFNV Sbjct 1690 YVGVQTVEDLRARMTYVCQCGGERHRQIVEHTTPWLLLSGTPNEKLVTTSTAPDFVAFNV 1749 Query 944 FQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCKMTSVWYPTVRYTADCNVVVYDL 1003 FQG+ET+VGHYVH R+K GL K+DSG+++KTSD KCK+T V +P +Y++DCNVV Y L Sbjct 1750 FQGIETAVGHYVHARLKGGLILKFDSGTVSKTSDWKCKVTDVLFPGQKYSSDCNVVRYSL 1809 Query 1004 DGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILPGSVYSNSCLVGVDGTPGSDTIS 1063 DG + EV+PDLS +Y+KDGKY+TS+P + YSPATIL GSVY+NSCLV DG PG D IS Sbjct 1810 DGNFRTEVDPDLSAFYVKDGKYFTSEPPVTYSPATILAGSVYTNSCLVSSDGQPGGDAIS 1869 Query 1064 KFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSNYNPVYKKGVMLKGKPILWVNNG 1123 FN+LLGFD +KP++KK TYS LP EDGDVLL+EF Y+P+YK G M KGKPILWVN Sbjct 1870 LSFNNLLGFDSSKPVTKKYTYSFLPKEDGDVLLAEFDTYDPIYKNGAMYKGKPILWVNKA 1929 Query 1124 VCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQLVEHNVPVVDDVPITTRKLIEV 1183 D+ LNK NRASLRQ++DVAPI L+NK+T L ++ + P VD V + I V Sbjct 1930 SYDTNLNKFNRASLRQIFDVAPIELENKFTPLSVESTPV---EPPTVDVVALQQEMTI-V 1985 Query 1184 KCKGLNKPFVKGNFSFVNDPNGVTVVDTLGLTELRALYVDINTRYIVLRDNNWSSLFKLH 1243 KCKGLNKPFVK N SFV D +G VV+ L +L LYVD + IVL+DN SS+ +LH Sbjct 1986 KCKGLNKPFVKDNVSFVADDSGTPVVEYLSKEDLHTLYVDPKYQVIVLKDNVLSSMLRLH 2045 Query 1244 TVESGDLQIVAAGGSVTRRARVLLGASSLFASFAKITVTATTAACKTAGRGFCKFVVNYG 1303 TVESGD+ +VAA GS+TR+ ++L AS F FA T TATTA V G Sbjct 2046 TVESGDINVVAASGSLTRKVKLLFRASFYFKEFATRTFTATTAVGSCIKSVVRHLGVTKG 2105 Query 1304 VLQNMFVFLKMLFFLPFNYLWPKKQPTVDIGVSGLRTAGIVTTNIVKQCGTAAYYMLLGK 1363 +L F F+KMLF LP Y K T ++ VS L+TAG+VT N+VKQC TAA + + K Sbjct 2106 ILTGCFSFVKMLFMLPLAYFSDSKLGTTEVKVSALKTAGVVTGNVVKQCCTAAVDLSMDK 2165 Query 1364 FKRVDWKATLRLFLLLCTTILLLSSIYHLVLFNQVLSSDVMLEDATGILAIYKEVRSYLG 1423 +RVDWK+TLRL L+LCTT++LLSS+YHL +FNQVLSSDVM EDA G+ YKEVR+YLG Sbjct 2166 LRRVDWKSTLRLLLMLCTTMVLLSSVYHLYVFNQVLSSDVMFEDAQGLKKFYKEVRAYLG 2225 Query 1424 IRTLCDGLVVEYRNTSFDVMEFCSNRSVLCQWCLIGQDSLTRYSALQMLQTHITSYVLNI 1483 I + CDGL YR SFDV FC+NRS +C WCLI QDS+T Y AL+M+QTH++ YVLNI Sbjct 2226 ISSACDGLASAYRANSFDVPTFCANRSAMCNWCLISQDSITHYPALKMVQTHLSHYVLNI 2285 Query 1484 DWIWFALEFFLAYVLYTSSFNVLLLVVTAQYFFAYTSAFVNWRAYNYIVSGLFFLVTHIP 1543 DW+WFA E LAY+LYTS+FN LLL T YFFA TS FV+WR+YNY VS F+L THIP Sbjct 2286 DWLWFAFETGLAYMLYTSAFNWLLLAGTLHYFFAQTSIFVDWRSYNYAVSSAFWLFTHIP 2345 Query 1544 LHGLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYI 1603 + GLVR+YN LACLW LRKFY HVINGCKDTACLLCYKRNRLTRVEAST+VCG KRTFYI Sbjct 2346 MAGLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYI 2405 Query 1604 AANGGTSYCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVV 1663 ANGG S+C +HNWNCV+CDTAGVGNTFIC EVANDLTT LRR I TD+SHYYVDSV V Sbjct 2406 TANGGISFCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTV 2465 Query 1664 KDAVVELHYNRDGSSCYERYPLCYFTNLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQEN 1723 K+ VV+ +Y RDG YER+PLC FTNL+KLKFKEVCKT TGIPE+NF+IYD++DRGQE+ Sbjct 2466 KETVVQFNYRRDGQPFYERFPLCAFTNLDKLKFKEVCKTTTGIPEYNFIIYDSSDRGQES 2525 Query 1724 LARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEKL 1783 LARSACVYYSQVLCK +LLVD +LVT+VGDS EIA KM DSF+NSF+SL++V+RDKLEKL Sbjct 2526 LARSACVYYSQVLCKSILLVDSSLVTSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEKL 2585 Query 1784 INTARDCVRRGDDFQNVLKTFTDAARGHAGVESDVETTMVVDALQYAHKNDIQLTTECYN 1843 I+TARD VRRGD+F +VL TF DAARG AGVESDVET +VD++QYAHK+DIQ+T E YN Sbjct 2586 ISTARDGVRRGDNFHSVLTTFIDAARGPAGVESDVETNEIVDSVQYAHKHDIQITNESYN 2645 Query 1844 NYVPGYIKPDSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRI 1903 NYVP Y+KPDS++T DLG LID AASVNQ +RN+NGAC+WN+ YMKLSD+ KRQIRI Sbjct 2646 NYVPSYVKPDSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRI 2705 Query 1904 ACRKCNIPFRLTTSKLRAADNILSVKFSATKIVG 1937 ACRKCN+ FRLTTSKLRA DNILSV+F+A KIVG Sbjct 2706 ACRKCNLAFRLTTSKLRANDNILSVRFTANKIVG 2739 >RecName: Full=Replicase polyprotein 1a; Short=pp1a; AltName: Full=ORF1a polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=Non-structural protein 11; Short=nsp11 [Bat CoV 279/2005] Sequence ID: P0C6F5.1 Length: 4388 Range 1: 1387 to 2742 Score:696 bits(1795), Expect:0.0, Method:Compositional matrix adjust., Identities:479/1442(33%), Positives:736/1442(51%), Gaps:106/1442(7%) Query 510 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCS-GICAMPFGYVTHGLDLAQS 567 R KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHGL+L ++ Sbjct 1387 RYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEA 1444 Query 568 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 625 +R +K P V ++S + + N + + +T E FI V+ G Y W SG Sbjct 1445 ARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSY-SGQRT 1503 Query 626 VKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF-SDLEACRAYLTSRAAQQVN-IEVL 683 V + K G + Y + V + + ++ + + ++V I+V Sbjct 1504 ELGVEFLK----RGDKVVY-----HTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVF 1554 Query 684 VTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSESEK 741 T+D N T I++ + T+ +Q G T+ G D++ P K G++ FV +D+ SE Sbjct 1555 TTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEA 1614 Query 742 VVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHD 801 EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + + + Sbjct 1615 F---EYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQI-E 1670 Query 802 IKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKM 861 +KF PALQ AY R + GD +F ALI+AY + T D + + LL A L SAK Sbjct 1671 VKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLE-SAKR 1729 Query 862 VWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLL 921 V C CG + TG+ A +Y G S EEL++ C+CG + LV+ + +++ Sbjct 1730 VLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVM 1789 Query 922 VSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCK 981 +S T + N + G GHY H+ VK+ L Y+ D LTK S+ K Sbjct 1790 MSA--PPSEYTLQQGAFLCANEYTG-SYQCGHYTHVTVKETL-YRIDGAYLTKMSEYKGP 1845 Query 982 MTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILP 1041 +T V+Y + YT V Y LDGV E+ P L YY KD YYT +P I P LP Sbjct 1846 VTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQP-IDLVPTQPLP 1904 Query 1042 GSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSN 1101 + + N L + D N + GF KP S++L+ + P+ +GDV+ ++ + Sbjct 1905 NASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELSVTFFPDLNGDVVAIDYRH 1957 Query 1102 YNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQ 1161 Y+ +KKG L KPI+W N + KPN LR L+ P+ N + VL+ +Q Sbjct 1958 YSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQ 2017 Query 1162 -----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLG 1213 E P ++V P +++IE K + V GN GV V LG Sbjct 2018 GMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIE---VVGNVILKPSEEGVKVTQELG 2074 Query 1214 LTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLF 1273 +L A YV+ T + + N S L T+ + AA SV +L F Sbjct 2075 HEDLMAAYVE-ETSITIKKPNELSLALGLRTLATHG---AAAINSVPWSK--ILAYVKPF 2128 Query 1274 ASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDI 1333 A +T T C + NY +F F N PT I Sbjct 2129 LGQAAVTTTNCIKRCVQ------RVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTT-I 2181 Query 1334 GVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLV 1393 + +++ + ++ Y+ KF ++ T+ ++LLL +I L S IY Sbjct 2182 AKNSVKSVAKLCLDVCIN------YVKSPKFSKL---FTIAMWLLL-LSICLGSLIYVTA 2231 Query 1394 LFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEFCSNRSVL 1452 F +LS+ LGI + CDG+ Y N+S M+FC S L Sbjct 2232 AFGVLLSN--------------------LGIPSYCDGVRESYVNSSNVTTMDFCEG-SFL 2270 Query 1453 CQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTA 1512 C CL G DSL Y AL+ +Q I+SY L++ + A E+FLAY+L+T F +L L Sbjct 2271 CSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIM 2330 Query 1513 QYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVIN 1569 Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Y H+++ Sbjct 2331 QVFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMD 2385 Query 1570 GCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGN 1629 GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ CDT G+ Sbjct 2386 GCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGS 2445 Query 1630 TFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFT 1689 TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER+PL +F Sbjct 2446 TFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFV 2505 Query 1690 NLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVT 1749 NL+ L+ T +P N +++D + E+ A+SA VYYSQ++C+P+LL+D LV+ Sbjct 2506 NLDNLRAN---NTKGSLP-INVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVS 2561 Query 1750 TVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAAR 1809 VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL TF AAR Sbjct 2562 DVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAAR 2621 Query 1810 GHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAA 1869 V++DV+T V++ L+ +H +D+++T + NN++ Y K +++ DLG ID A Sbjct 2622 -QGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2680 Query 1870 SVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVK 1929 +N ++ N + +WN DYM LS+ ++QIR A +K NIPFRLT + R N ++ K Sbjct 2681 HINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTK 2740 Query 1930 FS 1931 S Sbjct 2741 IS 2742 Range 2: 1010 to 1160 Score:145 bits(367), Expect:2e-33, Method:Compositional matrix adjust., Identities:69/151(46%), Positives:95/151(62%), Gaps:0/151(0%) Query 314 INNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISN 373 + ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q+ESD+YI Sbjct 1010 LTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKK 1069 Query 374 NGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGI 433 NGPL VG S LL GH LA +HVVGP+ ED LLK Y FN +++ PL+SAGI Sbjct 1070 NGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGI 1129 Query 434 FSVDPKVSFEYLLANVTTTTYVVVNNEDIYN 464 F P S + + V T Y VN++D+Y+ Sbjct 1130 FGAKPLQSLKMCVETVRTQVYFAVNDQDLYD 1160 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 1387 to 2742 Score:694 bits(1790), Expect:0.0, Method:Compositional matrix adjust., Identities:479/1442(33%), Positives:736/1442(51%), Gaps:106/1442(7%) Query 510 RTKGVDTTKKIQTVD-GVSYYLYSARDALTDVIAAANGCS-GICAMPFGYVTHGLDLAQS 567 R KG+ + I VD GV ++ Y++++ + +I N + + MP GYVTHGL+L ++ Sbjct 1387 RYKGIKVQEGI--VDYGVRFFFYTSKEPVASIITKLNLLNEPLVTMPIGYVTHGLNLEEA 1444 Query 568 GNYVRQVKVPYVCLLASKEQIPIMNSDV--AIQTPETAFINNVTSNGGYHSWHLVSGDLI 625 +R +K P V ++S + + N + + +T E FI V+ G Y W SG Sbjct 1445 ARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFIETVSLAGMYRDWSY-SGQRT 1503 Query 626 VKDVCYKKLLHWSGQTICYADNKFYVVKNDVALPF-SDLEACRAYLTSRAAQQVN-IEVL 683 V + K G + Y + V + + ++ + + ++V I+V Sbjct 1504 ELGVEFLK----RGDKVVY-----HTVGSPIQFHLDGEVLLLDKLKSLLSLREVRTIKVF 1554 Query 684 VTIDGVNFRTVILNDTTTFRKQLGATFYKGVDISDAFPTVKMGGESLFV--ADNLSESEK 741 T+D N T I++ + T+ +Q G T+ G D++ P K G++ FV +D+ SE Sbjct 1555 TTVDNTNLHTQIVDMSMTYGQQFGPTYLDGADVTKIKPHAKHEGKTFFVLPSDDTLRSEA 1614 Query 742 VVLKEYYGTSDVTFLQRYYSLQPLVQQWKFVVHDGVKSLKLSNYNCYINATIMMIDMLHD 801 EYY T D +FL RY S ++WKF G+ S+K ++ NCY+++ ++ + + + Sbjct 1615 F---EYYHTLDESFLGRYMSALNHTKKWKFPQIGGLTSIKWADNNCYLSSVLLALQQI-E 1670 Query 802 IKFVVPALQNAYLRYKGGDPYDFLALIMAYGDCTFDNPDDEAKLLHTLLAKAELTVSAKM 861 +KF PALQ AY R + GD +F ALI+AY + T D + + LL A L SAK Sbjct 1671 VKFNAPALQEAYYRARAGDAANFCALILAYSNRTVGELGDVRETMTHLLQHANLE-SAKR 1729 Query 862 VWREWCTVCGIRDIEYTGMRACVYAGVNSMEELQSVFNETCVCGSVKHRQLVEHSAPWLL 921 V C CG + TG+ A +Y G S EEL++ C+CG + LV+ + +++ Sbjct 1730 VLNVVCKTCGQKSTTLTGVEAVMYMGTLSYEELKTGVTIPCICGRDATQYLVQQESSFVM 1789 Query 922 VSGLNEVKVSTSTDPIYRAFNVFQGVETSVGHYVHIRVKDGLFYKYDSGSLTKTSDMKCK 981 +S T + N + G GHY H+ VK+ L Y+ D LTK S+ K Sbjct 1790 MSA--PPSEYTLQQGAFLCANEYTG-SYQCGHYTHVTVKETL-YRIDGAYLTKMSEYKGP 1845 Query 982 MTSVWYPTVRYTADCNVVVYDLDGVTKVEVNPDLSNYYMKDGKYYTSKPTIKYSPATILP 1041 +T V+Y + YT V Y LDGV E+ P L YY KD YYT +P I P LP Sbjct 1846 VTDVFYKEISYTTTIKPVSYKLDGVIYTEIQPKLDEYYKKDNAYYTEQP-IDLVPTQPLP 1904 Query 1042 GSVYSNSCLVGVDGTPGSDTISKFFNDLLGFDETKPISKKLTYSLLPNEDGDVLLSEFSN 1101 + + N L + D N + GF KP S++L+ + P+ +GDV+ ++ + Sbjct 1905 NASFDNFKLTCSNTKFADD-----LNQMTGFK--KPASRELSVTFFPDLNGDVVAIDYRH 1957 Query 1102 YNPVYKKGVMLKGKPILWVNNGVCDSALNKPNRASLRQLYDVAPIVLDNKYTVLQDNTSQ 1161 Y+ +KKG L KPI+W N + KPN LR L+ P+ N + VL+ +Q Sbjct 1958 YSASFKKGAKLLHKPIIWHINQTTNKTTYKPNTWCLRCLWSTKPVETSNSFEVLEVEDTQ 2017 Query 1162 -----LVEHNVPVVDDV---PITTRKLIEVKCKGLNKPFVKGNFSFVNDPNGVTVVDTLG 1213 E P ++V P +++IE K + V GN GV V LG Sbjct 2018 GMDNLACESQTPTSEEVVENPTIQKEVIECDVKTIE---VVGNVILKPSEEGVKVTQELG 2074 Query 1214 LTELRALYVDINTRYIVLRDNNWSSLFKLHTVESGDLQIVAAGGSVTRRARVLLGASSLF 1273 +L A YV+ T + + N S L T+ + AA SV +L F Sbjct 2075 HEDLMAAYVE-ETSITIKKPNELSLALGLRTLAT---HGAAAINSVPWSK--ILAYVKPF 2128 Query 1274 ASFAKITVTATTAACKTAGRGFCKFVVNYGVLQNMFVFLKMLFFLPFNYLWPKKQPTVDI 1333 A +T T C + NY +F F N PT I Sbjct 2129 LGQAAVTTTNCIKRCVQ------RVFNNYMPYVITLLFQLCTFTRSTNSRIRASLPTT-I 2181 Query 1334 GVSGLRTAGIVTTNIVKQCGTAAYYMLLGKFKRVDWKATLRLFLLLCTTILLLSSIYHLV 1393 + +++ + ++ Y+ KF ++ T+ ++LLL +I L S IY Sbjct 2182 AKNSVKSVAKLCLDVCIN------YVKSPKFSKL---FTIAMWLLL-LSICLGSLIYVTA 2231 Query 1394 LFNQVLSSDVMLEDATGILAIYKEVRSYLGIRTLCDGLVVEYRNTS-FDVMEFCSNRSVL 1452 F +LS+ LGI + CDG+ Y N+S M+FC S L Sbjct 2232 AFGVLLSN--------------------LGIPSYCDGVRESYVNSSNVTTMDFCEG-SFL 2270 Query 1453 CQWCLIGQDSLTRYSALQMLQTHITSYVLNIDWIWFALEFFLAYVLYTSSFNVLLLVVTA 1512 C CL G DSL Y AL+ +Q I+SY L++ + A E+FLAY+L+T F +L L Sbjct 2271 CSVCLNGLDSLDSYPALETIQVTISSYKLDLTSLGLAAEWFLAYMLFTKFFYLLGLSAIM 2330 Query 1513 QYFFAY-TSAFVN--WRAYNYIVSGLFFLVTHIPLHGLVRVYNFLACLWFLRKFYSHVIN 1569 Q FF Y S F++ W + +I+S +V P+ +VR+Y F A +++ K Y H+++ Sbjct 2331 QVFFGYFASHFISNSWLMW-FIIS----IVQMAPVSAMVRMYIFFAFCYYVWKSYVHIMD 2385 Query 1570 GCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTSYCCKHNWNCVECDTAGVGN 1629 GC + C++CYKRNR TRVE +TIV G KR+FY+ ANGG +C HNWNC+ CDT G+ Sbjct 2386 GCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRGFCKAHNWNCLNCDTFCAGS 2445 Query 1630 TFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELHYNRDGSSCYERYPLCYFT 1689 TFI EVA DL+ +R I PTDQS Y VDSV VK+ + L++++ G YER+PL +F Sbjct 2446 TFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLYFDKAGQKTYERHPLSHFV 2505 Query 1690 NLEKLKFKEVCKTPTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVT 1749 NL+ L+ T +P N +++D + E+ A+SA VYYSQ++C+P+LL+D LV+ Sbjct 2506 NLDNLRAN---NTKGSLPI-NVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVS 2561 Query 1750 TVGDSREIAIKMLDSFINSFISLFSVSRDKLEKLINTARDCVRRGDDFQNVLKTFTDAAR 1809 VGDS E+++KM D+++++F + FSV +KL+ L+ TA + +G VL TF AAR Sbjct 2562 DVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAAR 2621 Query 1810 GHAGVESDVETTMVVDALQYAHKNDIQLTTECYNNYVPGYIKPDSINTLDLGCLIDLKAA 1869 V++DV+T V++ L+ +H +D+++T + NN++ Y K +++ DLG ID A Sbjct 2622 -QGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNAR 2680 Query 1870 SVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLRAADNILSVK 1929 +N ++ N + +WN DYM LS+ ++QIR A +K NIPFRLT + R N ++ K Sbjct 2681 HINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTRQVVNAITTK 2740 Query 1930 FS 1931 S Sbjct 2741 IS 2742 Range 2: 1010 to 1160 Score:145 bits(366), Expect:3e-33, Method:Compositional matrix adjust., Identities:69/151(46%), Positives:95/151(62%), Gaps:0/151(0%) Query 314 INNSVTLVLGDAIQIASLLPKCILVNAANRHLKHGGGIAGVINKASGGDVQEESDEYISN 373 + ++V + D ++ A ++VNAAN HLKHGGG+AG +NKA+ G +Q+ESD+YI Sbjct 1010 LTDNVAIKCVDIVKEAQHAKPTVIVNAANVHLKHGGGVAGALNKATNGAMQQESDDYIKK 1069 Query 374 NGPLHVGDSVLLKGHGLADAILHVVGPDARNNEDAALLKRCYKAFNKHTIVVTPLISAGI 433 NGPL VG S LL GH LA +HVVGP+ ED LLK Y FN +++ PL+SAGI Sbjct 1070 NGPLTVGGSCLLSGHNLAKKCMHVVGPNLNAGEDVQLLKAAYANFNSQDVLLAPLLSAGI 1129 Query 434 FSVDPKVSFEYLLANVTTTTYVVVNNEDIYN 464 F P S + + V T Y VN++D+Y+ Sbjct 1130 FGAKPLQSLKMCVETVRTQVYFAVNDQDLYD 1160