########################################
# Program: needle
# Rundate: Sat May 26 2007 11:24:02
# Commandline: needle
#    [-asequence] P02722.fasta
#    [-bsequence] 1okc.fasta
#    [-outfile] first.needle
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: first.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: ADT1_BOVIN
# 2: 1OKC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 298
# Identity:     297/298 (99.7%)
# Similarity:   297/298 (99.7%)
# Gaps:           1/298 ( 0.3%)
# Score: 1542.0
# 
#
#=======================================

ADT1_BOVIN         1 MSDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ     50
                      |||||||||||||||||||||||||||||||||||||||||||||||||
1OKC               1 -SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ     49

ADT1_BOVIN        51 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1OKC              50 YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL     99

ADT1_BOVIN       101 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1OKC             100 GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA    149

ADT1_BOVIN       151 QREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1OKC             150 QREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG    199

ADT1_BOVIN       201 MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIM    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
1OKC             200 MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIM    249

ADT1_BOVIN       251 YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV    298
                     ||||||||||||||||||||||||||||||||||||||||||||||||
1OKC             250 YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV    297


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