RID: 09DM983H013 Job Title:POLG_TBEVH Q01299 (Capsid protein C) Program: BLASTP Query: POLG_TBEVH Q01299 (Capsid protein C) ID: lcl|Query_7913849(amino acid) Length: 96 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 70733 192 192 100% 2e-57 100.00 3414 Q01299.1 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 11088 192 192 100% 2e-57 100.00 3414 P14336.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Louping ill ... NA 11086 181 181 100% 2e-53 93.75 3414 P22338.2 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 11087 171 171 100% 7e-50 88.54 3412 P07720.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Langat virus... NA 31639 151 151 100% 4e-43 78.12 776 P29838.2 RecName: Full=Genome polyprotein; Contains: RecName:... Langat virus... NA 31638 151 151 100% 6e-43 78.12 3414 P29837.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Omsk hemorrh... NA 12542 151 151 100% 8e-43 79.17 3414 Q7T6D2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kyasanur For... NA 33743 135 135 100% 2e-37 71.13 3416 D7RF80.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Alkhumra hem... NA 172148 132 132 100% 3e-36 68.04 3416 Q91B85.1 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne p... NA 39008 113 113 93% 2e-29 64.04 3415 Q04538.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407141 35.8 35.8 39% 0.023 45.95 3412 Q074N0.1 Alignments: >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (strain HYPR)] Sequence ID: Q01299.1 Length: 3414 Range 1: 1 to 96 Score:192 bits(489), Expect:2e-57, Method:Compositional matrix adjust., Identities:96/96(100%), Positives:96/96(100%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK Sbjct 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR Sbjct 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (WESTERN SUBTYPE)] Sequence ID: P14336.4 Length: 3414 Range 1: 1 to 96 Score:192 bits(489), Expect:2e-57, Method:Compositional matrix adjust., Identities:96/96(100%), Positives:96/96(100%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK Sbjct 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR Sbjct 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Louping ill virus] Sequence ID: P22338.2 Length: 3414 Range 1: 1 to 96 Score:181 bits(460), Expect:2e-53, Method:Compositional matrix adjust., Identities:90/96(94%), Positives:93/96(96%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M +K ILKGKGGGPPRRVSKETATKTRQ RVQMPNGLVLMRMMGILWHAVAGTARNPVLK Sbjct 1 MGRKTILKGKGGGPPRRVSKETATKTRQSRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 AFWNSVPL+QATAALRKIKRTVSALMVGLQ+RGKRR Sbjct 61 AFWNSVPLRQATAALRKIKRTVSALMVGLQRRGKRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (STRAIN SOFJIN)] Sequence ID: P07720.3 Length: 3412 Range 1: 1 to 96 Score:171 bits(433), Expect:7e-50, Method:Compositional matrix adjust., Identities:85/96(89%), Positives:89/96(92%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M KAILKGKGGGPPRRVSKETA KTRQ RVQMPNGLVLMRMMGILWHAVAGTAR+PVLK Sbjct 1 MAGKAILKGKGGGPPRRVSKETAKKTRQSRVQMPNGLVLMRMMGILWHAVAGTARSPVLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 +FW SVPLKQATAALRKIK+ VS LMVGLQ+RGKRR Sbjct 61 SFWKSVPLKQATAALRKIKKAVSTLMVGLQRRGKRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E [Langat virus (strain Yelantsev)] Sequence ID: P29838.2 Length: 776 Range 1: 1 to 96 Score:151 bits(382), Expect:4e-43, Method:Compositional matrix adjust., Identities:75/96(78%), Positives:81/96(84%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M KA+LKGKGGGPPRR SK KTRQ RVQMPNGLVLMRM+G+LWHA+ GTAR+PVLK Sbjct 1 MAGKAVLKGKGGGPPRRASKVAPKKTRQLRVQMPNGLVLMRMLGVLWHALTGTARSPVLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 AFW VPLKQAT ALRKIKRTVS LMVGL +RG RR Sbjct 61 AFWKVVPLKQATLALRKIKRTVSTLMVGLHRRGSRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Langat virus (strain TP21)] Sequence ID: P29837.2 Length: 3414 Range 1: 1 to 96 Score:151 bits(382), Expect:6e-43, Method:Compositional matrix adjust., Identities:75/96(78%), Positives:81/96(84%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M KA+LKGKGGGPPRR SK KTRQ RVQMPNGLVLMRM+G+LWHA+ GTAR+PVLK Sbjct 1 MAGKAVLKGKGGGPPRRASKVAPKKTRQLRVQMPNGLVLMRMLGVLWHALTGTARSPVLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 AFW VPLKQAT ALRKIKRTVS LMVGL +RG RR Sbjct 61 AFWKVVPLKQATLALRKIKRTVSTLMVGLHRRGSRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Omsk hemorrhagic fever virus] Sequence ID: Q7T6D2.1 Length: 3414 Range 1: 1 to 96 Score:151 bits(381), Expect:8e-43, Method:Compositional matrix adjust., Identities:76/96(79%), Positives:83/96(86%), Gaps:0/96(0%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M KAILKGKGGGPPRRVSKETA KTRQ VQMPNGLVL R+M ILWHA+ GTAR+P+LK Sbjct 1 MAGKAILKGKGGGPPRRVSKETAKKTRQRVVQMPNGLVLKRIMEILWHAMVGTARSPLLK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR 96 +FW VPLKQA AALRKIK+ VS LM+GLQKRGKRR Sbjct 61 SFWKVVPLKQAMAALRKIKKAVSTLMIGLQKRGKRR 96 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Kyasanur Forest disease virus] Sequence ID: D7RF80.1 Length: 3416 Range 1: 1 to 97 Score:135 bits(341), Expect:2e-37, Method:Compositional matrix adjust., Identities:69/97(71%), Positives:80/97(82%), Gaps:1/97(1%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M K A+LKGKGGGPPRRV KETA KTRQ ++PNGLVLMRMMG+LWH VAGTARNP+LK Sbjct 1 MAKGAVLKGKGGGPPRRVPKETAKKTRQGPGRLPNGLVLMRMMGVLWHMVAGTARNPILK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQK-RGKRR 96 FW +VP++QA AALRKI++TV L+ L K RGKRR Sbjct 61 RFWATVPVRQAIAALRKIRKTVGLLLDSLNKRRGKRR 97 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Alkhumra hemorrhagic fever virus] Sequence ID: Q91B85.1 Length: 3416 Range 1: 1 to 97 Score:132 bits(331), Expect:3e-36, Method:Compositional matrix adjust., Identities:66/97(68%), Positives:80/97(82%), Gaps:1/97(1%) Query 1 MVKKAILKGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLK 60 M K A+LKGKGGGPPRRV KETA KTRQ ++PNGLVLMRMMG+LWH +AGTAR+P+LK Sbjct 1 MAKGAVLKGKGGGPPRRVPKETAKKTRQGPGRLPNGLVLMRMMGVLWHMIAGTARSPILK 60 Query 61 AFWNSVPLKQATAALRKIKRTVSALMVGLQ-KRGKRR 96 FW +VP++QA AALRKI++TV L+ L +RGKRR Sbjct 61 RFWATVPVRQAIAALRKIRKTVGLLLDSLNRRRGKRR 97 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Tick-borne powassan virus (strain lb)] Sequence ID: Q04538.1 Length: 3415 Range 1: 6 to 94 Score:113 bits(282), Expect:2e-29, Method:Compositional matrix adjust., Identities:57/89(64%), Positives:64/89(71%), Gaps:0/89(0%) Query 8 KGKGGGPPRRVSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLKAFWNSVP 67 KGKGGGPPRR K TA K+R MP G VL RM+GILWHAV GTAR PVLK FW +VP Sbjct 6 KGKGGGPPRRKLKVTANKSRPATSPMPKGFVLSRMLGILWHAVTGTARPPVLKMFWKTVP 65 Query 68 LKQATAALRKIKRTVSALMVGLQKRGKRR 96 L+QA A L+KIKR + LM L RG+RR Sbjct 66 LRQAEAVLKKIKRVIGNLMQSLHMRGRRR 94 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ethiopia/Couma/1961] Sequence ID: Q074N0.1 Length: 3412 Range 1: 65 to 101 Score:35.8 bits(81), Expect:0.023, Method:Compositional matrix adjust., Identities:17/37(46%), Positives:24/37(64%), Gaps:0/37(0%) Query 59 LKAFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKR 95 LK W + +Q A LRK+KR V++LM+GL R +R Sbjct 65 LKRLWRMLDPRQGLAVLRKVKRVVASLMIGLSSRKRR 101