BLASTP 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_proteomes.fa 36,446 sequences; 11,640,862 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subun... 860 0.0 sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subun... 860 0.0 sp|A8GAR0|CLPX_SERP5 ATP-dependent Clp protease ATP-binding subun... 806 0.0 sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subun... 805 0.0 sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subun... 712 0.0 sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subun... 658 0.0 sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subun... 619 0.0 sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subun... 583 0.0 sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subun... 580 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU O... 103 4e-24 sp|A8GL96|HSLU_SERP5 ATP-dependent protease ATPase subunit HslU O... 96.7 1e-21 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU O... 95.1 3e-21 sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU O... 94.0 6e-21 sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU O... 93.6 9e-21 sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU O... 93.6 1e-20 sp|A4XPN6|HSLU_PSEMY ATP-dependent protease ATPase subunit HslU O... 93.2 1e-20 tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU... 92.0 3e-20 >sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 >sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/424 (100%), Positives = 424/424 (100%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 >sp|A8GAR0|CLPX_SERP5 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Serratia proteamaculans (strain 568) OX=399741 GN=clpX PE=3 SV=1 Length=423 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/424 (93%), Positives = 411/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSALPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI RV TGSGIGFGATVK +S+KA+EGELL Q EPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRVNTGSGIGFGATVKGESEKATEGELLLQAEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALFNLEGV+LEFR+EAL+AIA+ Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFNLEGVELEFREEALNAIAR 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM RKTGARGLRSIVE ALLDTMYDLPSM+ V+KVVIDESVI GQSKPLLIYGKPEA Q Sbjct 361 KAMKRKTGARGLRSIVEGALLDTMYDLPSMDSVDKVVIDESVIAGQSKPLLIYGKPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis OX=632 GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q12LA2|CLPX_SHEDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=clpX PE=3 SV=1 Length=426 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/425 (81%), Positives = 382/425 (90%), Gaps = 1/425 (0%) Query 1 MTDKRKDG-SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 M D + +G SGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECV+LCNDIIREEIKE++P R Sbjct 1 MGDNKNNGDSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEIKEISPKR 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 + LPTPHE+RNHLD+YVIGQ++AKKVLAVAVYNHYKRLRNG T GVELGKSNILLIG Sbjct 61 DHDKLPTPHELRNHLDEYVIGQDKAKKVLAVAVYNHYKRLRNGTTKEGVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLAR L+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQRG Sbjct 121 PTGSGKTLLAETLARSLNVPFAMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TSKILFICGGAFAGL+KVI R TG+GIGFGA VK + DKA+ ++L QVEPEDL+K+G Sbjct 241 TSKILFICGGAFAGLEKVIEQRAHTGTGIGFGAEVKGEQDKATISQILGQVEPEDLVKYG 300 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEFIGRLPVVATL EL E ALIQIL +PKNALTKQY ALF +E V+LEFR++AL AIA Sbjct 301 LIPEFIGRLPVVATLTELDESALIQILSQPKNALTKQYGALFEMENVELEFREDALKAIA 360 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 KKAM+RKTGARGLRSIVE LLDTMYDLP+++ V K VIDESV+ G+S P+LIY + + Sbjct 361 KKAMSRKTGARGLRSIVEGILLDTMYDLPTVKGVVKAVIDESVVKGESDPILIYENNDTK 420 Query 420 QASGE 424 ASGE Sbjct 421 AASGE 425 >sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=clpX PE=3 SV=1 Length=426 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/420 (78%), Positives = 359/420 (85%), Gaps = 2/420 (0%) Query 1 MTDKRK-DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR 59 MTD R + +GKLLYCSFCGKSQHEVRKLIAGPSV+ICDECVDLCNDIIREE++E Sbjct 1 MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAES 60 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG 119 LP P EI LD YVIGQE+AKKVL+VAVYNHYKRL D + VELGKSNILLIG Sbjct 61 SAHKLPAPKEISAILDQYVIGQERAKKVLSVAVYNHYKRLNQRDKKDDVELGKSNILLIG 120 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 PTGSGKTLLAETLARLL+VPFT+ADATTLTEAGYVGEDVENIIQKLLQKCDYDV+KAQ G Sbjct 121 PTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQMG 180 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHPQQEFLQVD Sbjct 181 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD 240 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 T ILFICGGAFAGL+KVI R T GIGFGA V++K + GE L +VEP+DL+KFG Sbjct 241 TRNILFICGGAFAGLEKVIQAR-STKGGIGFGAEVRSKQEGKKIGESLREVEPDDLVKFG 299 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 LIPEF+GRLPV+ATL EL E AL+QIL EPKNALTKQY LF +EGVDLEFR +AL ++A Sbjct 300 LIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVA 359 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419 ++A+ RKTGARGLRSI+E LLDTMY++PS +DV KVVIDESVIDG SKPLLIY E Q Sbjct 360 QRALERKTGARGLRSILEGILLDTMYEIPSQQDVSKVVIDESVIDGSSKPLLIYENSEPQ 419 >sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=clpX PE=3 SV=1 Length=422 Score = 619 bits (1597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/417 (75%), Positives = 353/417 (85%), Gaps = 5/417 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE-VAPHR 59 MTDK K G KLLYCSFCGKSQHEVRKLIAGPSV+ICDEC++LCNDIIR+EI E V Sbjct 1 MTDK-KAGGEKLLYCSFCGKSQHEVRKLIAGPSVFICDECIELCNDIIRDEIAETVDAEG 59 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLI 118 R+ LPTP EI L+ YVIGQ QAK+ L+VAVYNHYKRLR+ VEL KSNILLI Sbjct 60 TRTTLPTPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLI 119 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV KAQ Sbjct 120 GPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQH 179 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHP Q+F+Q+ Sbjct 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFIQI 239 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI +R E GIGFGA +K++ K + E QVEPEDLIKF Sbjct 240 DTTNILFICGGAFDGLEKVIRNRTEK-IGIGFGAEIKSREGK-NVSESFRQVEPEDLIKF 297 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL EL EEALIQIL EPKNAL KQYQ LF++EGVDLE R AL A+ Sbjct 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 A+KA+ RKTGARGLRSI+E+ALLD MYDLP++E VEKVV+DE I+ ++PLL+Y + Sbjct 358 ARKAIRRKTGARGLRSILESALLDIMYDLPTLEGVEKVVVDEGTIEEGAQPLLMYAE 414 >sp|A5FX05|CLPX_ACICJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=clpX PE=3 SV=1 Length=418 Score = 583 bits (1504), Expect = 0.0, Method: Compositional matrix adjust. Identities = 287/422 (68%), Positives = 350/422 (83%), Gaps = 4/422 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M+ K D S LYCSFCGKSQHEV KLIAGP+V+IC+ECV+LC DIIRE+ + Sbjct 1 MSTKSGD-SKNTLYCSFCGKSQHEVVKLIAGPTVFICNECVELCMDIIRED-NRTHLVKT 58 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 R +PTP EI LDDYVIGQ+ AK++L+VAV+NHYKRL + +N +E+ KSNI+L+GP Sbjct 59 RDGVPTPREICKVLDDYVIGQDHAKRILSVAVHNHYKRLAHAQKNNDIEIAKSNIMLVGP 118 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGI Sbjct 119 TGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGI 178 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDE+DKISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 179 VYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDT 238 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + ILFICGGAFAGL+K+I+ R + GSGIGFGA V+ +++ + G +L +VEPEDL+KFGL Sbjct 239 TNILFICGGAFAGLEKIIAQRGK-GSGIGFGADVRDPTEQRT-GAILREVEPEDLLKFGL 296 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL +L E ALI+IL +PKNAL KQY LF +EGV L F ++AL +A Sbjct 297 IPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAA 356 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 +A+ RKTGARGLRSI+E LL+TM+DLP ++ VE+VVI+ V +G++ PL ++GK A+ Sbjct 357 RAIQRKTGARGLRSIMENILLETMFDLPGLDSVEEVVINGEVAEGRANPLFLHGKERAET 416 Query 421 AS 422 S Sbjct 417 GS 418 >sp|A1B1H7|CLPX_PARDP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=clpX PE=3 SV=1 Length=421 Score = 580 bits (1495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/416 (71%), Positives = 346/416 (83%), Gaps = 5/416 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K A + +PTP Sbjct 9 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSSA-LKSGDGVPTPR 67 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI N LDDYVIGQE AK+VL+VAV+NHYKRL N + +EL KSNILLIGPTG GKTLL Sbjct 68 EICNVLDDYVIGQEHAKRVLSVAVHNHYKRL-NHSSKTDIELAKSNILLIGPTGCGKTLL 126 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+DK Sbjct 127 AQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERAQRGIVYIDEVDK 186 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 I+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 187 ITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 246 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++I+ R G+ +GFGA VK DK GEL Q+EPEDL+KFGLIPEF+GRL Sbjct 247 GAFAGLDRIIAQR-NKGTAMGFGAAVKEDDDKGV-GELFKQLEPEDLLKFGLIPEFVGRL 304 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALI IL +PKNAL KQYQ LF+LE V L F ++AL AIAK+A+ RKTG Sbjct 305 PVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTG 364 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDG-QSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP M+ VE+VV++E +D +KPLLI+ + + AS Sbjct 365 ARGLRSIMEDILLDTMFDLPGMDSVEEVVVNEEAVDNPTAKPLLIHTDSKKETASA 420 >sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 >sp|A1B5T0|HSLU_PARDP ATP-dependent protease ATPase subunit HslU OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=hslU PE=3 SV=1 Length=435 Score = 103 bits (257), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 83/144 (58%), Gaps = 6/144 (4%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + GD E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQRDAKRAVAVALRNRWRRRQLGDDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDE 185 T ++ LARL PF +AT TE GYVG DVE II+ L + ++ R DE Sbjct 64 TEISRRLARLARAPFLKVEATKFTEVGYVGRDVEQIIRDLADAAVIETRERMR-----DE 118 Query 186 IDKISRKSDNPSITRDVSGEGVQQ 209 + + KS + ++GEG ++ Sbjct 119 VKARAHKSAEDRVVAALAGEGARE 142 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 76/233 (33%), Positives = 107/233 (46%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 + GIV+IDEIDK++ ++D DVS EGVQ+ LL LIEGT + ++ Sbjct 241 ENGIVFIDEIDKVAARTDARG--GDVSREGVQRDLLPLIEGTTVST-----------KYG 287 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 288 PVRTDHILFIASGAF--------H----------------------------IAKPSDLL 311 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE I+IL E NALT+QY AL EGV ++F + + Sbjct 312 -----PELQGRLPIRVELRALTEEDFIRILTETDNALTRQYTALMATEGVTVQFIQDGIR 366 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A+ A GAR L +++E + + P E VV+D + ++ Sbjct 367 ALARIAAEVNGSVENIGARRLYTVIERVFEELSFSAPDRSG-ETVVVDAAFVE 418 >sp|A8GL96|HSLU_SERP5 ATP-dependent protease ATPase subunit HslU OS=Serratia proteamaculans (strain 568) OX=399741 GN=hslU PE=3 SV=1 Length=444 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD Y+IGQ +AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSYIIGQNKAKRAVAIALRNRWRRMQLNEMLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/215 (36%), Positives = 98/215 (46%), Gaps = 58/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGGQSS-GPDVSREGVQRDLLPLVEGCTVST------KHGM---- 297 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF +T S P DLI Sbjct 298 -VKTDHILFIASGAF-----------QTAS-------------------------PSDLI 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+ E +IL EP +LT+QY+AL EGV++EF E + Sbjct 321 -----PELQGRLPIRVELQALTTEDFERILTEPSASLTEQYKALMGTEGVNIEFTAEGIR 375 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 376 RIAEAAWQVNESTENIGARRLHTVLERLMEDISYD 410 >sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis OX=632 GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 >sp|Q12IT8|HSLU_SHEDO ATP-dependent protease ATPase subunit HslU OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=hslU PE=3 SV=1 Length=441 Score = 94.0 bits (232), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AK+ +AVA+ N ++R++ E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDAHIIGQNKAKRAVAVALRNRWRRMQLAPDLRQ-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++VE II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDL 103 >sp|P0A6H5|HSLU_ECOLI ATP-dependent protease ATPase subunit HslU OS=Escherichia coli (strain K12) OX=83333 GN=hslU PE=1 SV=1 Length=443 Score = 93.6 bits (231), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ+ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ + S DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGE--SSGPDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF + SD Sbjct 297 -VKTDHILFIASGAF---------------------QIAKPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL EGV++EF D + Sbjct 318 ---LIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + + YD Sbjct 375 RIAEAAWQVNESTENIGARRLHTVLERLMEEISYD 409 >sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=hslU PE=3 SV=1 Length=442 Score = 93.6 bits (231), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ +AKK +A+A+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRS-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LARL + PF +AT TE GYVG DV+ II+ L Sbjct 64 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDL 103 >sp|A4XPN6|HSLU_PSEMY ATP-dependent protease ATPase subunit HslU OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=hslU PE=3 SV=1 Length=446 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/101 (47%), Positives = 68/101 (67%), Gaps = 3/101 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ D E+ NIL+IGPTG G Sbjct 4 TPREIVHELNRHIIGQDDAKRAVAIALRNRWRRMQLPADLRQ--EVTPKNILMIGPTGVG 61 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 KT +A LA+L + PF +AT TE GYVG DVE+II+ L Sbjct 62 KTEIARRLAKLANAPFLKVEATKFTEVGYVGRDVESIIRDL 102 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/238 (32%), Positives = 107/238 (45%), Gaps = 62/238 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK++++ + DVS EGVQ+ LL LIEG + Sbjct 248 QHGIVFIDEIDKVAKRGNTGGA--DVSREGVQRDLLPLIEGCTV-----------NTKLG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF LA+ P DL+ Sbjct 295 MVKTDHILFIASGAFH----------------------------------LAK--PSDLV 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS + +IL EP +LT+QY AL EG+++EF +E + Sbjct 319 -----PELQGRLPIRVELKALSPQDFERILTEPHASLTEQYAALLKTEGLNIEFAEEGIK 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMY---DLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + + DL + E + ID + ++G Sbjct 374 RLAEIAWQVNEKTENIGARRLHTLLERLLEEVSFSAGDLAGQQSGEPIRIDAAYVNGH 431 >tr|A5FYD7|A5FYD7_ACICJ ATP-dependent protease ATPase subunit HslU OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=hslU PE=3 SV=1 Length=439 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 5/104 (5%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGV--ELGKSNILLIGPTGS 123 TP EI + LD +++GQ+ AK+ +A+A+ N ++R + G+ E+ NIL+IGPTG Sbjct 8 TPREIVSELDRFIVGQQDAKRAVAIALRNRWRRQQ---LPEGLREEVVPKNILMIGPTGC 64 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 GKT +A LA+L PF +AT TE GYVG DVE+I++ L++ Sbjct 65 GKTEIARRLAKLAQAPFIKVEATKFTEVGYVGRDVESIVRDLVE 108 Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 113/251 (45%), Gaps = 58/251 (23%) Query 169 CDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 228 D + GIV++DEIDKI ++++ DVS EGVQ+ LL LIEGT + Sbjct 235 ADARLHAETHGIVFLDEIDKICARTESGFRGGDVSREGVQRDLLPLIEGTTVST------ 288 Query 229 KHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLA 288 ++ V T ILFI GAF V SD Sbjct 289 -----KYGPVKTDHILFIASGAFH---------------------VAKPSD--------- 313 Query 289 QVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 348 L+PE GRLP+ L LS E +IL EP+++L KQY AL E VDL Sbjct 314 -----------LLPELQGRLPIRVELASLSREDFRRILTEPEHSLLKQYVALMKTENVDL 362 Query 349 EFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 F D+A+DA+A A GAR L +++E LL+ + + E V +D +++ Sbjct 363 HFTDDAVDAVAALAADINDRVENIGARRLATVLE-RLLEEISFAATDRAGETVTVDAALV 421 Query 404 DGQSKPLLIYG 414 + + PL G Sbjct 422 NDKVAPLAARG 432 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2571020568 Database: all_proteomes.fa Posted date: Mar 22, 2026 6:02 PM Number of letters in database: 11,640,862 Number of sequences in database: 36,446 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40