TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P00864, test sequence (883 letters) Database: 3g 884 sequences; 12,243,887 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE008892 AE006468 |AE008892| Salmonella typhimurium LT2, section... 1610 0.0 embl|AE006090|AE006090 Pasteurella multocida subsp. multocida st... 1127 0.0 AE012175 AE008922 |AE012175| Xanthomonas campestris pv. campestr... 395 e-110 embl|AE006190|AE006190 Pasteurella multocida subsp. multocida st... 30 4.1 AE008787 AE006468 |AE008787| Salmonella typhimurium LT2, section... 29 7.0 AE012251 AE008922 |AE012251| Xanthomonas campestris pv. campestr... 28 9.2 >AE008892 AE006468 |AE008892| Salmonella typhimurium LT2, section 196 of 220 of the complete genome. Length = 20385 Score = 1610 bits (4168), Expect = 0.0 Identities = 805/883 (91%), Positives = 840/883 (95%) Frame = -3 Query: 1 MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTL 60 MNEQYSALRSNVSMLGKVLGETIKDALGEHIL+RVETIRKLSKSSRAGN+ANRQELLTTL Sbjct: 15358 MNEQYSALRSNVSMLGKVLGETIKDALGEHILDRVETIRKLSKSSRAGNEANRQELLTTL 15179 Query: 61 QNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSED 120 QNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQP+L++ Sbjct: 15178 QNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPEVIARTLRKLKNQPDLNDA 14999 Query: 121 TIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLRQ 180 TIKKAVESLSLELVLTAHPTEITRRTLIHKM E+N CLKQLDN DIADYE +Q+MRRLRQ Sbjct: 14998 TIKKAVESLSLELVLTAHPTEITRRTLIHKMGEINNCLKQLDNTDIADYERHQVMRRLRQ 14819 Query: 181 LIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPXXXXXXXXXXXXXXGYKLPVEF 240 LIAQSWHTDEIRK RPSPVDEAKWGFAVVENSLWQGVP GYKLPV+F Sbjct: 14818 LIAQSWHTDEIRKQRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKLPVDF 14639 Query: 241 VPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELL 300 VPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDI VLVSELSMV+ATPELL Sbjct: 14638 VPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIHVLVSELSMVDATPELL 14459 Query: 301 ALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARLKGEELPKPEGLLTQNEELWEPLYACY 360 ALVGEEGA+EPYRYLMK LR+RLMATQ+WLEARLKGE+LPKP GLLTQNE+LWEPLYACY Sbjct: 14458 ALVGEEGASEPYRYLMKKLRARLMATQSWLEARLKGEKLPKPAGLLTQNEQLWEPLYACY 14279 Query: 361 QSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYES 420 QSLQACGMGIIANG+LLDTLRRVKCFGVPLVRIDIRQESTRHTEALGE+TRYLGIGDYES Sbjct: 14278 QSLQACGMGIIANGELLDTLRRVKCFGVPLVRIDIRQESTRHTEALGEITRYLGIGDYES 14099 Query: 421 WSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTP 480 WSEADKQAFLIRELNSKRPLLPRNW+PS +TREVL+TC+VIAEAP+GSIAAYVISMAKTP Sbjct: 14098 WSEADKQAFLIRELNSKRPLLPRNWEPSNDTREVLETCKVIAEAPKGSIAAYVISMAKTP 13919 Query: 481 SDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMVMIG 540 SDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNA+DVMTQLLNIDWYRGLIQGKQMVMIG Sbjct: 13918 SDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLIQGKQMVMIG 13739 Query: 541 YSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHXXXXXXXXXXAPAHAALLSQP 600 YSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFH APAHAALLSQP Sbjct: 13738 YSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQP 13559 Query: 601 PGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIMDEL 660 PGSLKGGLRVTEQGEMIRFKYGLPE+TVSSLSLYT AILEANLLPPPEPK+SWR IMDEL Sbjct: 13558 PGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPKDSWRHIMDEL 13379 Query: 661 SVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFA 720 SVISC+ YRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFA Sbjct: 13378 SVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFA 13199 Query: 721 WTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAE 780 WTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVF+KADLWLA+ Sbjct: 13198 WTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLAD 13019 Query: 781 YYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLN 840 YYDQRLV K LWPLGKELR+L EEDIKVVLAIANDSHLMADLPWIAESIQLRN+YTDPLN Sbjct: 13018 YYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHLMADLPWIAESIQLRNVYTDPLN 12839 Query: 841 VLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG 883 VLQAELL+RSR E++G+ PDPRVEQALMVTIAG+AAGMRNTG Sbjct: 12838 VLQAELLYRSRLTEEQGKSPDPRVEQALMVTIAGVAAGMRNTG 12710 >embl|AE006090|AE006090 Pasteurella multocida subsp. multocida str. Pm70 section 57 of 204 of the complete genome. Length = 9961 Score = 1127 bits (2914), Expect = 0.0 Identities = 561/886 (63%), Positives = 682/886 (76%), Gaps = 3/886 (0%) Frame = -2 Query: 1 MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTL 60 M +QYS +R+N+SMLG+ LGETI DA G ILE +E IR LS++SR G+D R LL TL Sbjct: 6840 MIQQYSTMRNNISMLGRFLGETISDAQGSDILELIENIRVLSRNSRHGDDQARNALLNTL 6661 Query: 61 QNLSNDELLPVARAFSQFLNLANTAEQYHSISPKG-EAASNPEVIARTLRKLKNQPELSE 119 +SN+ ++PVARAFSQFLNL N AEQY +IS + ++ I+ ++LK Q ++ + Sbjct: 6660 ATISNENIIPVARAFSQFLNLTNIAEQYQTISRHHHDHVASERSISALFKRLKAQ-QVPK 6484 Query: 120 DTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLR 179 + + + V+ L +ELVLTAHPTE+TRR+L+HK VE+N CL +L++ D+ D E + RRL Sbjct: 6483 ENVMETVQKLLIELVLTAHPTEVTRRSLVHKHVEINKCLSKLEHTDLTDAERKAIERRLL 6304 Query: 180 QLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPXXXXXXXXXXXXXXGYKLPVE 239 QLIAQ+WHT+EIR RP+P +EAKWGFAV+ENSLWQ VP G+ LPVE Sbjct: 6303 QLIAQAWHTNEIRTQRPTPFEEAKWGFAVIENSLWQAVPEFLRHLNTSAVEYFGFHLPVE 6124 Query: 240 FVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPEL 299 P+RF+SWMGGDRDGNP VTA++TR VL L+RWKA DLFL DIQ L ELS+V+ TPE Sbjct: 6123 LNPIRFSSWMGGDRDGNPFVTAEVTRQVLRLARWKAADLFLTDIQALSDELSVVKCTPEF 5944 Query: 300 LALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARLKGEELPK--PEGLLTQNEELWEPLY 357 A G EPYR ++K LRS+L AT A+ + L P+ E ++TQ+ +LWEPLY Sbjct: 5943 QAKYGSH--VEPYRTVVKALRSKLTATLAYYDDLL-ANRTPRVAEEDIITQDAQLWEPLY 5773 Query: 358 ACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGD 417 CYQSLQACGM IIANG LLD LRR++CFGV L R+DIRQESTRH EA+ E+TRY+G+GD Sbjct: 5772 DCYQSLQACGMRIIANGLLLDCLRRIRCFGVTLSRLDIRQESTRHAEAIAEITRYIGLGD 5593 Query: 418 YESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMA 477 Y WSE+DKQAFLI+EL+S+RPLLPR WQPSA T+EVLDTC+VIAE P+G I+ Y+ISMA Sbjct: 5592 YAQWSESDKQAFLIKELSSRRPLLPREWQPSAATQEVLDTCRVIAEQPEGVISCYIISMA 5413 Query: 478 KTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMV 537 KT SDVLAVHLLLKE+G+ + +PV PLFETLDDL + VM++L NI WYRG+I KQMV Sbjct: 5412 KTASDVLAVHLLLKESGVPYHLPVVPLFETLDDLRASEQVMSELFNIGWYRGVINNKQMV 5233 Query: 538 MIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHXXXXXXXXXXAPAHAALL 597 MIGYSDSAKDAG+MAASWAQY AQ+AL+ C+K IELTLFH APAHAALL Sbjct: 5232 MIGYSDSAKDAGMMAASWAQYCAQEALVNLCDKCNIELTLFHGRGGTIGRGGAPAHAALL 5053 Query: 598 SQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIM 657 SQPP SLK GLRVTEQGEMIRFK GLP + V SL LY AILEANLLPPPEPK WR +M Sbjct: 5052 SQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVESLGLYASAILEANLLPPPEPKAQWRTVM 4873 Query: 658 DELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPW 717 DELS ISC +YR VR KDFVPYFR+ATPEQEL KLPLGSRPAKR P GGVESLRAIPW Sbjct: 4872 DELSTISCQIYRDVVRGEKDFVPYFRAATPEQELSKLPLGSRPAKRNPNGGVESLRAIPW 4693 Query: 718 IFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLW 777 IFAW QNRLMLPAWLGAG +L++ +E G+++ +E MC+ WPFFSTR+GMLEMVF+K D W Sbjct: 4692 IFAWMQNRLMLPAWLGAGASLRQAIEKGQKTVIEDMCKTWPFFSTRIGMLEMVFSKTDTW 4513 Query: 778 LAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTD 837 L+E+YDQ LVD ALW LG+ LR ++DI+ VL+++++ LM+DLPWIAESI LRN+YTD Sbjct: 4512 LSEHYDQHLVDPALWYLGESLREQLKQDIQTVLSLSHEDQLMSDLPWIAESIALRNVYTD 4333 Query: 838 PLNVLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG 883 PLN+LQ ELL R R + P+P VEQALM+TI G+AAGMRNTG Sbjct: 4332 PLNLLQVELLRRLR---RNPDNPNPDVEQALMITITGVAAGMRNTG 4204 >AE012175 AE008922 |AE012175| Xanthomonas campestris pv. campestris str. ATCC 33913, section 83 of 460 of the complete genome. Length = 13498 Score = 395 bits (1014), Expect = e-110 Identities = 302/918 (32%), Positives = 452/918 (49%), Gaps = 42/918 (4%) Frame = +2 Query: 8 LRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDE 67 LR +V LG ++G+ + + + LE +E IR + + R +D LL+ L+ Sbjct: 173 LRDDVRRLGALVGDLLAEQVSADFLEEIERIRTTAIARRE-SDTPPAGLLSLLEGREPRA 349 Query: 68 LLPVARAFSQFLNLANTAEQYHSISPK------GEAASNPEVIARTLRKLKNQPELSEDT 121 + RAFS + + N AE+ H I + G PE + LR+LK Q ++ D Sbjct: 350 AEALVRAFSTYFQVVNIAERVHRIRRRRDYQRSGTDTPQPEGLHDALRRLKAQG-VTLDE 526 Query: 122 IKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKD--IADYEHNQLMRRLR 179 + + + + +E V TAHPTE RR L+ K + A L +DN D E R R Sbjct: 527 LSEWLPRIDVEPVFTAHPTEAVRRALLEKEQLMVASL--VDNLDGMRTPNERATDAARFR 700 Query: 180 QLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPXXXXXXXXXXXXXXGYKLPVE 239 + SW T + +RP+ DE + + L++ +P G L + Sbjct: 701 MALTASWQTADSSPVRPTVEDEREHVGFYLTQVLYRVIPVMYETLEHAIEETYGSTLALP 880 Query: 240 FVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELS----MVEA 295 + +RF +W+GGD DGNPNV A L R D +L ++ L S LS +V Sbjct: 881 RL-LRFGTWVGGDMDGNPNVDAHTIAGTLDAQRRAVLDRYLNELWQLASLLSQSTTLVAV 1057 Query: 296 TPELLALVGE------EGAAE--------PYRYLMKNLRSRLMATQAWLEARLKGEELPK 341 +P L A + + AA PYR L +R+RL AT L Sbjct: 1058 SPALSAQLERYQALLPDAAARSRPRHGDMPYRLLNDLMRARLQAT------------LDD 1201 Query: 342 PEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLR-RVKCFGVPLVRIDIRQEST 400 +G EL L SL+ G+ A + L RV+ FG L R+D+RQES+ Sbjct: 1202 ADGAYAAPAELEHDLQLILDSLEV-NKGLHAGWFAVRRLLWRVRSFGFHLARLDVRQESS 1378 Query: 401 RHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQV 460 H A+ + LG D++S +A +A L+ S LP+ + + Sbjct: 1379 VHARAVADA---LGQADWDS-QDATHRAGLLGPYASGEQALPQVDDEGNARLDAVFAALA 1546 Query: 461 IAEAPQGS--IAAYVISMAKTPSDVLAVHLLLKEAGI-----GFAMPVAPLFETLDDLNN 513 A G+ + +Y+ISMA +DVL V L + G+ + + PLFET+DDL Sbjct: 1547 DARTRHGADALGSYIISMAHNRADVLTVLALARRGGLVDDAGAVPLDIVPLFETVDDLRG 1726 Query: 514 ANDVMTQLLNIDWYRGLIQGK---QMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEK 570 + LL YR ++ + QMVM+GYSDS KD G+ A+ W +AQ L++ + Sbjct: 1727 GTGTVQDLLADPVYRQHLRARGDTQMVMLGYSDSGKDGGIAASRWGLQRAQVELLEAAAE 1906 Query: 571 AGIELTLFHXXXXXXXXXXAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSS 630 G+ LT FH AL + P GS+ G LRVTEQGE+I KYG+ + + S Sbjct: 1907 LGVRLTFFHGRGGSIVRGGGKTTRALDAAPRGSVDGRLRVTEQGEVIHRKYGIRALALRS 2086 Query: 631 LSLYTGAILEANLLP-PPEPKE-SWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPE 688 L TGA+L ++L P PEP+E +WR +MD ++ S YRG+V DF+ YFR ATP Sbjct: 2087 LEQMTGAVLLSSLRPRAPEPREDAWRPVMDLVAERSTVAYRGFVGA-PDFMQYFRLATPI 2263 Query: 689 QELGKLPLGSRPAKR-RPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQ 747 + ++ LGSRP++R + +LRAIPW+FAW+Q R ++P W G G+ LQ VE G + Sbjct: 2264 DVIERMTLGSRPSRRLGQDAALSNLRAIPWVFAWSQARAVIPGWYGVGSGLQAAVEAGHE 2443 Query: 748 SELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRL--VDKALWPLGKELRNLQEED 805 L M +DWPFF T L + MV +K DL +AE + + + +P ++ L + Sbjct: 2444 DSLREMAQDWPFFRTFLDDIAMVLSKGDLNIAELFSRLAGPLHARFFPRIRDELALTKHW 2623 Query: 806 IKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKEGQEPDPRVE 865 +K +L L+ P +A SI+LRN Y DP++VLQ +LL R R + E +E + Sbjct: 2624 VKTLL---GQRSLLQHDPRLALSIRLRNPYIDPISVLQVDLLQRWRATDGEDEE----LL 2782 Query: 866 QALMVTIAGIAAGMRNTG 883 +AL+ + G+A G++NTG Sbjct: 2783 RALVACVNGVAQGVQNTG 2836 >embl|AE006190|AE006190 Pasteurella multocida subsp. multocida str. Pm70 section 157 of 204 of the complete genome. Length = 10728 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 150 KMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTD 189 K VN L LDNK + + NQ + ++ Q I +SW D Sbjct: 7070 KRKRVNQFLGSLDNKIDLNTQTNQTLEQIAQAIFKSWFVD 7189 >AE008787 AE006468 |AE008787| Salmonella typhimurium LT2, section 91 of 220 of the complete genome. Length = 24186 Score = 28.9 bits (63), Expect = 7.0 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 13/90 (14%) Frame = +3 Query: 3 EQYSALRSNV-----SMLGKVLGETIKDALGEHILER------VETIRKLSKSSRAG--N 49 EQ++AL N S+L K LGE +L E ILE +ET+ + S A Sbjct: 15315 EQFAALNINANEYLRSVLVKALGEERASSLLEDILETRDTTSGIETLNFMEPQSAADLIR 15494 Query: 50 DANRQELLTTLQNLSNDELLPVARAFSQFL 79 D + Q + T L +L + + F + L Sbjct: 15495 DEHPQIIATILVHLKRSQAADILALFDERL 15584 >AE012251 AE008922 |AE012251| Xanthomonas campestris pv. campestris str. ATCC 33913, section 159 of 460 of the complete genome. Length = 10321 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -3 Query: 366 CGMGIIANGDLL----DTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIG 416 CG G++A ++ D L V+ FGV + RH G T +GIG Sbjct: 3014 CGEGVVAERQVVALAEDALGFVRGFGVVRAHLGTGFPQLRHQATAGGCTHVIGIG 2850 Database: 3g Posted date: Oct 31, 2007 1:21 PM Number of letters in database: 12,243,887 Number of sequences in database: 884 Lambda K H 0.317 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 884 Number of Hits to DB: 13,043,037 Number of extensions: 206125 Number of successful extensions: 1068 Number of sequences better than 10.0: 6 Number of HSP's gapped: 1052 Number of HSP's successfully gapped: 6 Length of query: 883 Length of database: 4,081,295 Length adjustment: 102 Effective length of query: 781 Effective length of database: 3,991,127 Effective search space: 3117070187 Effective search space used: 3117070187 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)