/home/export/samba/public/tmp/fasta35 tRNA1.fasta pf_genome.fasta 6 FASTA searches a protein or DNA sequence data bank version 35.02 September 18, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: U00096, 184 nt 1>>>U00096 U00096.2 Escherichia coli K12 MG1655, comple 184 nt - 184 ntfasta_search.txt Library: pf_genome.fasta 1918246 residues in 173 sequences opt E() < 20 0 0: 22 0 0: one = represents 1 library sequences 24 0 0: 26 0 0: 28 0 0: 30 0 1:* 32 0 3: * 34 11 7:======*==== 36 15 15:==============* 38 18 25:================== * 40 54 34:=================================*==================== 42 35 42:=================================== * 44 33 46:================================= * 46 39 47:======================================= * 48 56 45:============================================*=========== 50 33 41:================================= * 52 44 36:===================================*======== 54 31 31:==============================* 56 15 26:=============== * 58 26 21:====================*===== 60 20 17:================*=== 62 16 14:=============*== 64 10 11:==========* 66 9 9:========* 68 8 7:======*= 70 7 5:====*== 72 2 4:== * 74 8 3:==*===== 76 2 3:==* 78 2 2:=* 80 2 2:=* 82 3 1:*== 84 0 1:* 86 0 1:* 88 0 1:* 90 0 0: 92 0 0: 94 1 0:= 96 0 0: 98 0 0: 100 0 0: 102 0 0: 104 0 0: 106 0 0: 108 0 0: 110 0 0: 112 0 0: 114 0 0: 116 0 0: 118 0 0: >120 0 0: 1918246 residues in 173 sequences Statistics: (shuffled [500]) Expectation_n fit: rho(ln(x))= 6.9826+/-0.0336; mu= -6.7501+/- 3.153 mean_var=77.0954+/-34.720, 0's: 0 Z-trim: 0 B-trim: 0 in 0/15 Lambda= 0.146070 Kolmogorov-Smirnov statistic: 0.0283 (N=25) at 46 Algorithm: FASTA (3.5 Sept 2006) [optimized] Parameters: +5/-4 matrix (5:-4) ktup: 6 join: 47, opt: 32, open/ext: -12/-4, width: 16 The best scores are: opt bits E(173) AE010148 AE009950 |AE010148| Pyrococcus furios (14913) [f] 148 40.7 0.0002 AE010241 AE009950 |AE010241| Pyrococcus furios (13004) [r] 117 34.2 0.018 AE010162 AE009950 |AE010162| Pyrococcus furios (9685) [f] 114 33.5 0.028 AE010255 AE009950 |AE010255| Pyrococcus furios (7444) [r] 86 27.6 1.7 AE010283 AE009950 |AE010283| Pyrococcus furios (10991) [r] 79 26.2 4.6 AE010191 AE009950 |AE010191| Pyrococcus furios (10257) [f] 76 25.5 7.2 AE010214 AE009950 |AE010214| Pyrococcus furios (11615) [r] 75 25.3 8.2 AE010140 AE009950 |AE010140| Pyrococcus furios (14818) [r] 74 25.1 9.5 AE010297 AE009950 |AE010297| Pyrococcus furios (13483) [r] 73 24.9 11 AE010157 AE009950 |AE010157| Pyrococcus furios (10934) [r] 73 24.9 11 AE010156 AE009950 |AE010156| Pyrococcus furios (13354) [r] 72 24.7 13 AE010132 AE009950 |AE010132| Pyrococcus furios (11093) [r] 72 24.7 13 AE010139 AE009950 |AE010139| Pyrococcus furios (10851) [f] 72 24.7 13 AE010150 AE009950 |AE010150| Pyrococcus furios (11886) [f] 70 24.3 17 AE010200 AE009950 |AE010200| Pyrococcus furios (11753) [f] 70 24.3 17 AE010163 AE009950 |AE010163| Pyrococcus furios (14843) [r] 69 24.0 19 AE010237 AE009950 |AE010237| Pyrococcus furios (13082) [r] 69 24.0 19 AE010137 AE009950 |AE010137| Pyrococcus furios (11952) [f] 69 24.0 19 AE010242 AE009950 |AE010242| Pyrococcus furios (14652) [r] 68 23.8 22 AE010181 AE009950 |AE010181| Pyrococcus furios (10996) [r] 68 23.8 22 >>AE010148 AE009950 |AE010148| Pyrococcus furiosus DSM 3 (14913 nt) initn: 85 init1: 55 opt: 148 Z-score: 149.8 bits: 40.7 E(): 0.0002 banded Smith-Waterman score: 148; 67.5% identity (67.5% similar) in 77 nt overlap (8-82:5861-5937) 10 20 30 U00096 TGGGGTATCGCCAAGC--GGTAAGGCACCGGTTTTTG : ::: ::: : :: ::: :::: :: AE0101 TCTAATAACCCATTTTCGGATGCGGGCCCGTAGCCTAGCAGGATAGGGCGCCGGCCTTCT 5840 5850 5860 5870 5880 5890 40 50 60 70 80 90 U00096 ATACCGGCATTCCCTGGTTCGAATCCAGGTACCCCAGCCATCTTCTTCGAGTAAGCGGTT : :::: :::: ::::::::::: :: :: :::: :: ::: AE0101 AAGCCGGAGGTCCCGGGTTCGAATCCCGGCGGGCCCGCCAACTACTTTTGCTCTATTTTC 5900 5910 5920 5930 5940 5950 100 110 120 130 140 150 U00096 CACCGCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCGGCATT AE0101 AAGATATAGAATTCTTCCCATTGGAACACTATTATAAAATCATTTTCAAAATCTTCGACT 5960 5970 5980 5990 6000 6010 >>AE010241 AE009950 |AE010241| Pyrococcus furiosus DSM 3 (13004 nt) rev-comp initn: 85 init1: 55 opt: 117 Z-score: 115.6 bits: 34.2 E(): 0.018 banded Smith-Waterman score: 117; 65.2% identity (65.2% similar) in 69 nt overlap (184-117:2275-2343) 180 170 160 U0009- TGGCTGGGGTACCTGGATTCGAACCAGGGA :::: : :: ::::::::::: :::: AE0102 CTGACCAGGCTGAGCTACGGGCCCACTTACTGGCGCCGCCGCCCGGATTCGAACCGGGGA 2250 2260 2270 2280 2290 2300 150 140 130 120 110 100 U0009- ATGCCGGTATCAAAAACCGGTGCCTTACC-GCTTGGCGATACCCCAATAACCGGGCGGTG ::::: : : : :::: :: ::: ::: :: : AE0102 CCGCCGGATTAACAGTCCGGCGCTCCACCAGCTAAGCTACGGCGGCTCGCCCAAAAGATA 2310 2320 2330 2340 2350 2360 90 80 70 60 50 40 U0009- AACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTAT AE0102 TCCATTGCTATCAATTTATAAATGTTACGGTTCACTTTAAAACTCTTCGTGATAGAGGCA 2370 2380 2390 2400 2410 2420 >>AE010162 AE009950 |AE010162| Pyrococcus furiosus DSM 3 (9685 nt) initn: 55 init1: 55 opt: 114 Z-score: 114.5 bits: 33.5 E(): 0.028 banded Smith-Waterman score: 114; 64.4% identity (64.4% similar) in 90 nt overlap (1-89:6725-6807) 10 20 U00096 TGGGGTATC-GCCAAGCGGTAAGGCACCGG ::: ::: : ::::::: : :: :: AE0101 TGAATAAAGCAGTGATTGGGCATAGCCCCGTGGTGTAGCGGCCAAGC-ATGCGGGAC--- 6700 6710 6720 6730 6740 6750 30 40 50 60 70 80 U00096 TTTTTGATACCGGCATTCCCTGGTTCGAATCCAGGTACCCCAGCCATCTTCTTCGAGTAA ::: ::: ::: : ::: ::::::::::: :: : ::::: : ::: ::: AE0101 -TTTGGATCCCGCGA--CCCGGGTTCGAATCCCGGCGGGGCTACCATCGTTTTCTTTTAA 6760 6770 6780 6790 6800 90 100 110 120 130 140 U00096 GCGGTTCACCGCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACC AE0101 AAATCTTTTAAACGTCAAAACCTAAACTTCTATTAGGTGGGAAAATGTACCTAACAAAAG 6810 6820 6830 6840 6850 6860 >>AE010255 AE009950 |AE010255| Pyrococcus furiosus DSM 3 (7444 nt) rev-comp initn: 77 init1: 77 opt: 86 Z-score: 84.7 bits: 27.6 E(): 1.7 banded Smith-Waterman score: 86; 69.8% identity (69.8% similar) in 43 nt overlap (83-41:5420-5461) 110 100 90 80 70 60 U0009- CCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGA :::: :::::: ::: : :::::::: AE0102 GGTTCATTGGCATCATTTCCTATCACCTAAGAAG-AGATGGTGCGGGGGGCGGGATTCGA 5390 5400 5410 5420 5430 5440 50 40 30 20 10 U0009- ACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCA ::: : : : :: AE0102 ACCCGCGCAGCCCTACGGCACCGGATCTTAAGTCCGGCCCCTTTGGCCAGGCTCGGGCAC 5450 5460 5470 5480 5490 5500 >>AE010283 AE009950 |AE010283| Pyrococcus furiosus DSM 3 (10991 nt) rev-comp initn: 45 init1: 45 opt: 79 Z-score: 73.7 bits: 26.2 E(): 4.6 banded Smith-Waterman score: 79; 66.0% identity (66.0% similar) in 53 nt overlap (125-74:231-280) 150 140 130 120 110 100 U0009- AATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAA-TAACCGGGCGGT : :::: ::::::::: : : ::: : AE0102 CATTTTCGTTAATCCAGACGTAAGGAAGAAGTTTGGGAATACCCCAACTGA---GGCCAT 210 220 230 240 250 90 80 70 60 50 40 U0009- GAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTA ::: ::: ::: :: : : :: AE0102 GAAAACCTTCCTCAAATACGCTGAGAAGCTCTTTGGAAAAGTTGAATTTTACATGCCCCC 260 270 280 290 300 310 >>AE010191 AE009950 |AE010191| Pyrococcus furiosus DSM 3 (10257 nt) initn: 65 init1: 65 opt: 76 Z-score: 70.8 bits: 25.5 E(): 7.2 banded Smith-Waterman score: 76; 64.3% identity (64.3% similar) in 56 nt overlap (73-124:9461-9516) 50 60 70 80 90 U00096 CATTCCCTGGTTCGAATCCAGGTACCCCAGCCATCTTCTTCGAGTAAGCGG--TTCACC- :::::::: : : : ::::: ::: : AE0101 CGGAGCGATTCAAGGCGGATTCCGCCTACTCCATCTTCCTGGTGGGAGCGGTCTTCGGCT 9440 9450 9460 9470 9480 9490 100 110 120 130 140 150 U00096 -GCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCGGCATTCCC :: :: : : ::: :::: : :: AE0101 GGCTCGTTGAGGGGGTAATCGTCCAGGAAGCCTACATGGCCTTTCCCTTCCAGCTTGTGT 9500 9510 9520 9530 9540 9550 >>AE010214 AE009950 |AE010214| Pyrococcus furiosus DSM 3 (11615 nt) rev-comp initn: 45 init1: 45 opt: 75 Z-score: 68.7 bits: 25.3 E(): 8.2 banded Smith-Waterman score: 75; 69.2% identity (69.2% similar) in 39 nt overlap (169-133:1082-1120) 180 170 160 150 U0009- TGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCG--GTATCAA :: ::: :: : ::::::::: :::: AE0102 AGAGGCTTTACAATACCCTTGAAAACATAAGAGTCGCACTAAGGAATGCCGAAATATCTT 1060 1070 1080 1090 1100 1110 140 130 120 110 100 90 U0009- AAACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGA : ::: : : AE0102 ATACCTGGGGAGAACTGGAATTCAAGACATATGAGATAATTAGAGAAGGGAAAAGAAAAT 1120 1130 1140 1150 1160 1170 >>AE010140 AE009950 |AE010140| Pyrococcus furiosus DSM 3 (14818 nt) rev-comp initn: 83 init1: 55 opt: 74 Z-score: 65.6 bits: 25.1 E(): 9.5 banded Smith-Waterman score: 74; 56.3% identity (56.3% similar) in 103 nt overlap (170-74:3088-3185) 180 170 160 150 U0009- TGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAA ::: : :: ::::::::::: : AE0101 AAAAGTTCCCAAGAATGTTCCTCAGGAGTGGGAAGAGTACTTAGGAATGCCGGTTAGTGA 3060 3070 3080 3090 3100 3110 140 130 120 110 100 90 U0009- AACCGGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGG------TGAACCGCTTA : :: ::: ::: : ::: ::: : : ::: : :: : : : : ::: AE0101 A----GTCCCTGACC-CCTGGGGATGTCACGATAGCTATGCTGAGCATTTTATGGGATTA 3120 3130 3140 3150 3160 3170 80 70 60 50 40 30 U0009- CTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCG : :: ::::: : AE0101 TTTGAGGAAGAGGTTGCGAAGCTTGAGATGGATGTAGAGTTCTTGAGGGCTAGTGAGCTC 3180 3190 3200 3210 3220 3230 >>AE010297 AE009950 |AE010297| Pyrococcus furiosus DSM 3 (13483 nt) rev-comp initn: 61 init1: 61 opt: 73 Z-score: 65.2 bits: 24.9 E(): 11 banded Smith-Waterman score: 73; 70.7% identity (70.7% similar) in 41 nt overlap (99-60:9835-9872) 130 120 110 100 90 80 U0009- TACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTC-GAAGAAGATGGCT :::::: :::::: :::::: ::::: AE0102 AGAGATGTCCTAGAATTTATACTTCGAAATGGTGAA---GTTACTCAAAAGAAGCTGGCT 9810 9820 9830 9840 9850 9860 70 60 50 40 30 20 U0009- GGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGG : :: ::: AE0102 GAAATATTTGGGAGGGTTAAGACTTGTAGGATTATTAAAAACTTAGAAAAGAAGGGACTA 9870 9880 9890 9900 9910 9920 >>AE010157 AE009950 |AE010157| Pyrococcus furiosus DSM 3 (10934 nt) rev-comp initn: 85 init1: 55 opt: 73 Z-score: 66.9 bits: 24.9 E(): 11 banded Smith-Waterman score: 73; 66.1% identity (66.1% similar) in 62 nt overlap (170-110:712-766) 180 170 160 150 U0009- TGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAA ::::::::::: :: : ::: ::: : AE0101 AAGAAATTCAAGAAAATGGTAGCCCCGCGGGGATTCGAACCCCGG--TCGCGGGATCCAG 690 700 710 720 730 140 130 120 110 100 90 U0009- AACCGGTGCCTTACCGCTTGG-CGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGA : :: :: : :::::: :: ::: ::: AE0101 A----GTCCCGCA-TGCTTGGCCGCTACACCACGGGGCTACTTCCGAATTTTACTCTTAT 740 750 760 770 780 790 80 70 60 50 40 30 U0009- AGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCC AE0101 AAACCAATTTTTAAGCTTTATGGTTTTTCAAAAAGTTTTGGAAAACATTCCAAGGTCAAA 800 810 820 830 840 850 >>AE010156 AE009950 |AE010156| Pyrococcus furiosus DSM 3 (13354 nt) rev-comp initn: 50 init1: 50 opt: 72 Z-score: 64.1 bits: 24.7 E(): 13 banded Smith-Waterman score: 72; 66.7% identity (66.7% similar) in 48 nt overlap (58-12:9226-9271) 80 70 60 50 40 U0009- TACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAG-GGAATGCCGGTATCAAAAA :::::::::: : : ::: ::: :::: AE0101 AATGATCCAATCTTCGCTAAGCTGAAAACTTTCGAACCAGTTCACTTCCGTTAT--AAAA 9200 9210 9220 9230 9240 9250 30 20 10 U0009- CCGGTGCCTTACCGCTTGGCGATACCCCA : : :::: : ::: AE0101 GCCTAGACTTAGAGATTGATGGTTGGTATATGAAGCCCGAGCTCAAGGAGGGAGAAAAAG 9260 9270 9280 9290 9300 9310 >>AE010132 AE009950 |AE010132| Pyrococcus furiosus DSM 3 (11093 nt) rev-comp initn: 112 init1: 54 opt: 72 Z-score: 65.6 bits: 24.7 E(): 13 banded Smith-Waterman score: 72; 74.1% identity (74.1% similar) in 27 nt overlap (140-114:3926-3952) 170 160 150 140 130 120 U0009- GGATTCGAACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCC :::: ::::::: : :::::: :: AE0101 GCTTATTAGCCTTGCAGCGAGCTTTGCTCCAACCAGTGCCTTTAGGTTTGGCGCGACATC 3900 3910 3920 3930 3940 3950 110 100 90 80 70 60 U0009- AATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACC AE0101 GTCCATTGCCCTGTCTATGTAATCCTCCAACTTCTTTCTGAGCTGATAAAGCCTGTCTAT 3960 3970 3980 3990 4000 4010 >>AE010139 AE009950 |AE010139| Pyrococcus furiosus DSM 3 (10851 nt) initn: 53 init1: 53 opt: 72 Z-score: 65.8 bits: 24.7 E(): 13 banded Smith-Waterman score: 72; 66.7% identity (66.7% similar) in 42 nt overlap (63-102:4003-4044) 40 50 60 70 80 90 U00096 TTGATACCGGCATTCCCTGGTTCGAATCCAGGTACCCCAGCCATCTTCTTC--GAGTAAG :::::: : :::::: ::: :: ::: AE0101 CAATGTTTGTGAGTCTTTCAGCGTTTTTAGGGTACCTCCTCCATCTCATTCTGGACAAAG 3980 3990 4000 4010 4020 4030 100 110 120 130 140 150 U00096 CGGTTCACCGCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCG : :: : : :: AE0101 AGATTAAGCTCCTTTGAGGAGGTTTATTAATATTCCCCCTACCCCTGTCACCATCATCTG 4040 4050 4060 4070 4080 4090 >>AE010150 AE009950 |AE010150| Pyrococcus furiosus DSM 3 (11886 nt) initn: 50 init1: 50 opt: 70 Z-score: 62.8 bits: 24.3 E(): 17 banded Smith-Waterman score: 70; 78.3% identity (78.3% similar) in 23 nt overlap (66-88:2461-2483) 40 50 60 70 80 90 U00096 ATACCGGCATTCCCTGGTTCGAATCCAGGTACCCCAGCCATCTTCTTCGAGTAAGCGGTT :: : :: ::: :::::::::: AE0101 CATTTTTCTTCCCCTCCCTCTAAATTGTTCACTCAAGAAATCCTCTTCGAGTAGTTTGAA 2440 2450 2460 2470 2480 2490 100 110 120 130 140 150 U00096 CACCGCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCGGCATT AE0101 GACACACCACTTTTAAATTTTTAGCTCCTCCCATTTTTTCTTCATAAGCAGAGCATCCCC 2500 2510 2520 2530 2540 2550 >>AE010200 AE009950 |AE010200| Pyrococcus furiosus DSM 3 (11753 nt) initn: 53 init1: 53 opt: 70 Z-score: 62.9 bits: 24.3 E(): 17 banded Smith-Waterman score: 70; 63.4% identity (63.4% similar) in 41 nt overlap (128-168:11413-11453) 100 110 120 130 140 150 U00096 CCGCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATACCGGCATTCC :::::: : :::::: :: : ::: AE0102 TGTTGTCTTTCCAACGTTTGGGTTCCCAACTAAGGCCACAGTTTTTAGCACGATTACTCC 11390 11400 11410 11420 11430 11440 160 170 180 U00096 CTGGTTCGAATCCAGGTACCCCAGCCA :: :: ::: AE0102 CTCCTTACAATAATCTTACTTGCAATTCCCCAGCCAAGAGCTATTTTTGATGAACCTATC 11450 11460 11470 11480 11490 11500 >>AE010163 AE009950 |AE010163| Pyrococcus furiosus DSM 3 (14843 nt) rev-comp initn: 45 init1: 45 opt: 69 Z-score: 59.9 bits: 24.0 E(): 19 banded Smith-Waterman score: 69; 77.8% identity (77.8% similar) in 27 nt overlap (166-140:1476-1501) 180 170 160 150 140 U0009- TGGCTGGGGTACCTGGATTCGAACCAGGGAATGCCGGTATCAAAAACC :: :::::::: ::: :::: :::: AE0101 CAACCCCTACAAGGAGAAAAACTGAAACTATCCAACCAGGG-ATGTTGGTAAAAAAAGAA 1450 1460 1470 1480 1490 1500 130 120 110 100 90 80 U0009- GGTGCCTTACCGCTTGGCGATACCCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAG AE0101 GCTAATGAAATCGAAATTAGAAGTGCTAGTCCTCCCATCTCCGGGACAAGAACTTCTTGC 1510 1520 1530 1540 1550 1560 >>AE010237 AE009950 |AE010237| Pyrococcus furiosus DSM 3 (13082 nt) rev-comp initn: 55 init1: 55 opt: 69 Z-score: 60.9 bits: 24.0 E(): 19 banded Smith-Waterman score: 69; 59.4% identity (59.4% similar) in 69 nt overlap (83-18:1746-1814) 110 100 90 80 70 60 U0009- CCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCT-GGATTCG :: :: ::: : :::: :: ::: AE0102 AATGCACACAGTGAAATTTGCCAAACAACAGAGGAGGATTATTCTGGTAACTAATCTTCC 1720 1730 1740 1750 1760 1770 50 40 30 20 10 U0009- AACCA--GGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCA : : : :::::::: ::::::: : :: :: : AE0102 AGCTAGTGGGAATGCAAAGCTCAAAAATGAGGGCTTTCCAATTTTAGACTTCTAAAGGCT 1780 1790 1800 1810 1820 1830 AE0102 TTGCAAGGCAGTAGTGTTGTGAGAGCATTACCTCCTGATGTCCTCAAAGGTAACATCCTC 1840 1850 1860 1870 1880 1890 >>AE010137 AE009950 |AE010137| Pyrococcus furiosus DSM 3 (11952 nt) initn: 60 init1: 60 opt: 69 Z-score: 61.6 bits: 24.0 E(): 19 banded Smith-Waterman score: 69; 81.0% identity (81.0% similar) in 21 nt overlap (118-138:5155-5175) 90 100 110 120 130 140 U00096 AAGCGGTTCACCGCCCGGTTATTGGGGTATCGCCAAGCGGTAAGGCACCGGTTTTTGATA ::: :: :::::::::::: AE0101 CCGAGGAAGTTCCGCCCACCGCACCGGGGCCGCGGTGCCGTAAGGCACCGGCCGAGAGGC 5130 5140 5150 5160 5170 5180 150 160 170 180 U00096 CCGGCATTCCCTGGTTCGAATCCAGGTACCCCAGCCA AE0101 CGGGCAACGGCACAGAAACGACACGTCCCTCGGGGGATGTGGATGAAAGCGGTGAAGGCT 5190 5200 5210 5220 5230 5240 >>AE010242 AE009950 |AE010242| Pyrococcus furiosus DSM 3 (14652 nt) rev-comp initn: 50 init1: 50 opt: 68 Z-score: 58.8 bits: 23.8 E(): 22 banded Smith-Waterman score: 68; 84.2% identity (84.2% similar) in 19 nt overlap (83-65:987-1005) 110 100 90 80 70 60 U0009- CCCAATAACCGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGA :::::::::: ::::: : AE0102 CACTTAGATAAACTCCAAAAGCTAGTGAAAGAAGAAGATGAATGGGGAAGAGGATATCTA 960 970 980 990 1000 1010 50 40 30 20 10 U0009- ACCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCA AE0102 AAGGCCTTAAATGGCTTCATGAGCGCAATAAAGGATAATGACACCGATTCACTCATTATA 1020 1030 1040 1050 1060 1070 >>AE010181 AE009950 |AE010181| Pyrococcus furiosus DSM 3 (10996 nt) rev-comp initn: 45 init1: 45 opt: 68 Z-score: 61.1 bits: 23.8 E(): 22 banded Smith-Waterman score: 68; 77.4% identity (77.4% similar) in 31 nt overlap (131-104:1914-1944) 160 150 140 130 120 110 U0009- CCAGGGAATGCCGGTATCAAAAACCGGTGCCTTACCG--CTTGGCG-ATACCCCAATAAC ::::::: ::::::: ::: ::: ::: AE0101 CGGCAGCTCATCTATGAGCTCGCTGAACTTCTTACCGCTCTTGGCGAATATTTCAACAAC 1890 1900 1910 1920 1930 1940 100 90 80 70 60 50 U0009- CGGGCGGTGAACCGCTTACTCGAAGAAGATGGCTGGGGTACCTGGATTCGAACCAGGGAA : AE0101 CTTAGCCACGGTCATTGCACCATCTCTTCCCAGTACGTGATCTGGGAAGATTACTCCACC 1950 1960 1970 1980 1990 2000 184 residues in 1 query sequences 1918246 residues in 173 library sequences Scomplib [35.02] start: Fri Oct 5 01:03:46 2007 done: Fri Oct 5 01:04:30 2007 Total Scan time: 1.060 Total Display time: 0.000 Function used was FASTA [version 35.02 September 18, 2007]