TBLASTN 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P00864, test sequence (883 letters) Database: pm 204 sequences; 2,269,587 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value embl|AE006090|AE006090 Pasteurella multocida subsp. multocida st... 1127 0.0 embl|AE006190|AE006190 Pasteurella multocida subsp. multocida st... 30 0.77 embl|AE006208|AE006208 Pasteurella multocida subsp. multocida st... 26 8.6 >embl|AE006090|AE006090 Pasteurella multocida subsp. multocida str. Pm70 section 57 of 204 of the complete genome. Length = 9961 Score = 1127 bits (2914), Expect = 0.0 Identities = 561/886 (63%), Positives = 682/886 (76%), Gaps = 3/886 (0%) Frame = -2 Query: 1 MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTL 60 M +QYS +R+N+SMLG+ LGETI DA G ILE +E IR LS++SR G+D R LL TL Sbjct: 6840 MIQQYSTMRNNISMLGRFLGETISDAQGSDILELIENIRVLSRNSRHGDDQARNALLNTL 6661 Query: 61 QNLSNDELLPVARAFSQFLNLANTAEQYHSISPKG-EAASNPEVIARTLRKLKNQPELSE 119 +SN+ ++PVARAFSQFLNL N AEQY +IS + ++ I+ ++LK Q ++ + Sbjct: 6660 ATISNENIIPVARAFSQFLNLTNIAEQYQTISRHHHDHVASERSISALFKRLKAQ-QVPK 6484 Query: 120 DTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDNKDIADYEHNQLMRRLR 179 + + + V+ L +ELVLTAHPTE+TRR+L+HK VE+N CL +L++ D+ D E + RRL Sbjct: 6483 ENVMETVQKLLIELVLTAHPTEVTRRSLVHKHVEINKCLSKLEHTDLTDAERKAIERRLL 6304 Query: 180 QLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPXXXXXXXXXXXXXXGYKLPVE 239 QLIAQ+WHT+EIR RP+P +EAKWGFAV+ENSLWQ VP G+ LPVE Sbjct: 6303 QLIAQAWHTNEIRTQRPTPFEEAKWGFAVIENSLWQAVPEFLRHLNTSAVEYFGFHLPVE 6124 Query: 240 FVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPEL 299 P+RF+SWMGGDRDGNP VTA++TR VL L+RWKA DLFL DIQ L ELS+V+ TPE Sbjct: 6123 LNPIRFSSWMGGDRDGNPFVTAEVTRQVLRLARWKAADLFLTDIQALSDELSVVKCTPEF 5944 Query: 300 LALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARLKGEELPK--PEGLLTQNEELWEPLY 357 A G EPYR ++K LRS+L AT A+ + L P+ E ++TQ+ +LWEPLY Sbjct: 5943 QAKYGSH--VEPYRTVVKALRSKLTATLAYYDDLL-ANRTPRVAEEDIITQDAQLWEPLY 5773 Query: 358 ACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGD 417 CYQSLQACGM IIANG LLD LRR++CFGV L R+DIRQESTRH EA+ E+TRY+G+GD Sbjct: 5772 DCYQSLQACGMRIIANGLLLDCLRRIRCFGVTLSRLDIRQESTRHAEAIAEITRYIGLGD 5593 Query: 418 YESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMA 477 Y WSE+DKQAFLI+EL+S+RPLLPR WQPSA T+EVLDTC+VIAE P+G I+ Y+ISMA Sbjct: 5592 YAQWSESDKQAFLIKELSSRRPLLPREWQPSAATQEVLDTCRVIAEQPEGVISCYIISMA 5413 Query: 478 KTPSDVLAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMV 537 KT SDVLAVHLLLKE+G+ + +PV PLFETLDDL + VM++L NI WYRG+I KQMV Sbjct: 5412 KTASDVLAVHLLLKESGVPYHLPVVPLFETLDDLRASEQVMSELFNIGWYRGVINNKQMV 5233 Query: 538 MIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHXXXXXXXXXXAPAHAALL 597 MIGYSDSAKDAG+MAASWAQY AQ+AL+ C+K IELTLFH APAHAALL Sbjct: 5232 MIGYSDSAKDAGMMAASWAQYCAQEALVNLCDKCNIELTLFHGRGGTIGRGGAPAHAALL 5053 Query: 598 SQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPKESWRRIM 657 SQPP SLK GLRVTEQGEMIRFK GLP + V SL LY AILEANLLPPPEPK WR +M Sbjct: 5052 SQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVESLGLYASAILEANLLPPPEPKAQWRTVM 4873 Query: 658 DELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPW 717 DELS ISC +YR VR KDFVPYFR+ATPEQEL KLPLGSRPAKR P GGVESLRAIPW Sbjct: 4872 DELSTISCQIYRDVVRGEKDFVPYFRAATPEQELSKLPLGSRPAKRNPNGGVESLRAIPW 4693 Query: 718 IFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLW 777 IFAW QNRLMLPAWLGAG +L++ +E G+++ +E MC+ WPFFSTR+GMLEMVF+K D W Sbjct: 4692 IFAWMQNRLMLPAWLGAGASLRQAIEKGQKTVIEDMCKTWPFFSTRIGMLEMVFSKTDTW 4513 Query: 778 LAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTD 837 L+E+YDQ LVD ALW LG+ LR ++DI+ VL+++++ LM+DLPWIAESI LRN+YTD Sbjct: 4512 LSEHYDQHLVDPALWYLGESLREQLKQDIQTVLSLSHEDQLMSDLPWIAESIALRNVYTD 4333 Query: 838 PLNVLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG 883 PLN+LQ ELL R R + P+P VEQALM+TI G+AAGMRNTG Sbjct: 4332 PLNLLQVELLRRLR---RNPDNPNPDVEQALMITITGVAAGMRNTG 4204 >embl|AE006190|AE006190 Pasteurella multocida subsp. multocida str. Pm70 section 157 of 204 of the complete genome. Length = 10728 Score = 29.6 bits (65), Expect = 0.77 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 150 KMVEVNACLKQLDNKDIADYEHNQLMRRLRQLIAQSWHTD 189 K VN L LDNK + + NQ + ++ Q I +SW D Sbjct: 7070 KRKRVNQFLGSLDNKIDLNTQTNQTLEQIAQAIFKSWFVD 7189 >embl|AE006208|AE006208 Pasteurella multocida subsp. multocida str. Pm70 section 175 of 204 of the complete genome. Length = 8850 Score = 26.2 bits (56), Expect = 8.6 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 528 RGLIQGKQMVMIG--YSDSAKDAGVMAASWAQYQ 559 RG +QG + + G Y + D G+ SW QYQ Sbjct: 4218 RGKVQGYALGVYGTWYQNPNDDTGLYIDSWLQYQ 4319 Database: pm Posted date: Oct 31, 2007 1:19 PM Number of letters in database: 2,269,587 Number of sequences in database: 204 Lambda K H 0.317 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 204 Number of Hits to DB: 1,963,385 Number of extensions: 26195 Number of successful extensions: 105 Number of sequences better than 10.0: 3 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 3 Length of query: 883 Length of database: 756,529 Length adjustment: 90 Effective length of query: 793 Effective length of database: 738,169 Effective search space: 585368017 Effective search space used: 585368017 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)