TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= sp|P53312|SUCB_YEAST Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSC2 PE=1 SV=1 Length=427 Score E Sequences producing significant alignments: (Bits) Value scaffold-361 285 3e-84 scaffold-199 281 9e-83 scaffold-693 32.7 0.35 scaffold-223 31.6 0.78 > scaffold-361 Length=455836 Score = 285 bits (730), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 174/423 (41%), Positives = 255/423 (60%), Gaps = 33/423 (8%) Frame = +3 Query 31 LSIHEYRSAQLLREYGIGtpe----gfpaftpeeafeaaKKLNTNKLVIKAQALTGGRGK 86 L++ E+ S LL ++G E ++ TN++V+KAQ L GGRGK Sbjct 6018 LNVQEHTSKSLLDKFGCQNQRFRIVKTAEEAREAFNAITRECKTNQVVVKAQILAGGRGK 6197 Query 87 GHF-------DTGYK-----SGVHMIESPQQAEDVAKEMLNHNLITKQTGIAGKPVSAVY 134 G F G K GV + +S + + K M+ +L TK TG G PV V Sbjct 6198 GRFVGAEKDGQVGSKKASDVGGVMLTKSADECAQLVKYMVGRSLRTK*TGAEGVPVRRVM 6377 Query 135 IVKRVDTKHEAYLSILMDRQTKKPMII-ASSQGGMNIEEVAERTPDAIKKFSIET-SKGL 192 I + ++ E Y +ILMDR + +++ S +GGM+IE+VAE TP+ I K ++ + ++G Sbjct 6378 IAEAMNIVKETYFAILMDRSSPTGIVLMGSPKGGMDIEKVAEETPELIFKVNVNSLNEGP 6557 Query 193 SPQMAKDVAKSLGFSPDAQDEAAKAVSNLYKIFMERDATQVEINPLSEIEHDPTHKIMCT 252 + + +AK+L F + AA + LY++F++ DATQ+EINPL + + ++M Sbjct 6558 TEEQCLGLAKNL*FKGE*AQ*AASEMRKLYEMFVKLDATQIEINPLGQTDK---GQVMAF 6728 Query 253 DAKFGFDDNASFRQEKIY-SWRD--LSQEDPDEVKAKKYDLNFVKLKG-NIGCLVNGAGL 308 DAK FDDNA FR ++ RD + +EDP E A++ +LN++ LKG NIGCLVNGAGL Sbjct 6729 DAKLNFDDNAEFRHLALHKEARDESIDEEDPRERLAREANLNYISLKGGNIGCLVNGAGL 6908 Query 309 AMATMDVIKLNGGD----PANFLDCGGGATPETIKQGFELILSNKNVDAIFVNIFGGIVR 364 AMATMD+I L G PANFLD GG AT E ++ F+LI+S++NV AI VNIFGGI++ Sbjct 6909 AMATMDIINLYGKSKNIGPANFLDVGGSATTEQVRSAFKLIMSDENVKAILVNIFGGIMK 7088 Query 365 CDYVALGLVEAARELEVR----VPIVARLQGTKVEEGRDIINKSGVKIYSFDELDPAAKK 420 CD +A G+VEA ++L+ +P+V RL GT V EG+ I+++S + I S D+LD AA+K Sbjct 7089 CDVIASGIVEAMKDLKKSNMRTIPLVVRLSGTNV*EGKRILSESKLDITSADDLDQAAQK 7268 Query 421 VVE 423 V+ Sbjct 7269 AVK 7277 > scaffold-199 Length=1112851 Score = 281 bits (719), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 164/376 (44%), Positives = 237/376 (63%), Gaps = 29/376 (8%) Frame = +2 Query 66 KKLNTNKLVIKAQALTGGRGKGHF-------DTGYK-----SGVHMIESPQQAEDVAKEM 113 ++ TN++V+KAQ L GGRGKG F G K GV + +S + + K M Sbjct 859553 RECKTNQVVVKAQILAGGRGKGRFVGAEKDGQVGSKKATDVGGVMLTKSADECAQLVKYM 859732 Query 114 LNHNLITKQTGIAGKPVSAVYIVKRVDTKHEAYLSILMDRQTKKPMII-ASSQGGMNIEE 172 + +L TK TG G PV V I + ++ E Y +ILMDR + +++ S +GGM+IE+ Sbjct 859733 VGRSLRTK*TGSEGVPVRRVMIAEAMNIVKETYFAILMDRSSPTGIVLMGSPKGGMDIEK 859912 Query 173 VAERTPDAIKKFSIET-SKGLSPQMAKDVAKSLGFSPDAQDEAAKAVSNLYKIFMERDAT 231 VAE TP+ I K ++ + ++G + + +AK+L F + AA + LY++F++ DAT Sbjct 859913 VAEETPELIFKVNVNSLNEGPTEEQCLGLAKNLQFKGE*AQ*AASEMRKLYEMFVKLDAT 860092 Query 232 QVEINPLSEIEHDPTHKIMCTDAKFGFDDNASFRQEKIY-SWRD--LSQEDPDEVKAKKY 288 Q+EINPL + + ++M DAK FDDNA FR ++ RD + +EDP E A++ Sbjct 860093 QIEINPLGQTDK---GQVMAFDAKLNFDDNAEFRHLALHKEARDESIDEEDPRERLAREA 860263 Query 289 DLNFVKLKG-NIGCLVNGAGLAMATMDVIKLNGGD----PANFLDCGGGATPETIKQGFE 343 +LN++ LKG NIGCLVNGAGLAMATMD+I L G PANFLD GG AT E ++ F+ Sbjct 860264 NLNYISLKGGNIGCLVNGAGLAMATMDIINLYGKSKKIGPANFLDVGGSATTEQVRSAFK 860443 Query 344 LILSNKNVDAIFVNIFGGIVRCDYVALGLVEAARELEVR----VPIVARLQGTKVEEGRD 399 LI+S++NV AI VNIFGGI++CD +A G+VEA ++L+ +P+V RL GT VEEG+ Sbjct 860444 LIMSDENVKAILVNIFGGIMKCDVIASGIVEAMKDLKKSNMRTIPLVVRLSGTNVEEGKR 860623 Query 400 IINKSGVKIYSFDELD 415 I+ +S + I S D+LD Sbjct 860624 ILAESKLDITSADDLD 860671 > scaffold-693 Length=1268102 Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust. Identities = 38/175 (22%), Positives = 75/175 (43%), Gaps = 36/175 (21%) Frame = +2 Query 107 EDVAKEMLNHNLITK-----QTGIAGKPVSAV-------------YIVKRVDTKHEAYLS 148 ED+ K +++H +GI G+P+ A ++ ++ + S Sbjct 879413 EDMGKILVDHGFNYGGKDYLTSGITGEPLEAYIFFGPIFY*KLKHMVMDKMHARSRGPRS 879592 Query 149 ILMDRQTKKPMIIASSQGGMNIEE-----VAERTPDAIKKFSIETSKGLSPQMAKDV-AK 202 +L T+ P+ S GG+ + E VA + +++ FS+ +++ D A Sbjct 879593 VL----TR*PLEGRSRDGGLRVGEMERDCVAGDSAVSLRHFSVRID-----ELSNDAHAG 879745 Query 203 SLGFSPDAQD-EAAKAVSNLYKIFMERDATQVEINPLSEIEHDPTHKIMCTDAKF 256 L ++ Q E V+ L K ER+ ++ S ++ P HK+MC+D ++ Sbjct 879746 LLSYNEQTQGMEVDTQVAWLNK--EERECVRLNFEDGSHLDVTPDHKVMCSDGQW 879904 > scaffold-223 Length=76170 Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust. Identities = 40/174 (23%), Positives = 75/174 (43%), Gaps = 34/174 (20%) Frame = +2 Query 105 QAEDVAKEMLNHNLITK-----QTGIAGKPVSAV-------------YIVKRVDTKHEAY 146 + ED+ K +++H +GI G+P+ A ++ ++ + Sbjct 30872 RIEDMGKILVDHGFNYGGKDYLTSGITGEPLEAYIFFGPIFY*KLKHMVMDKMHARSRGP 31051 Query 147 LSILMDRQTKKPMIIASSQGGMNIEE-----VAERTPDAIKKFSIETSKGLSPQMAKDVA 201 S+L T+ P+ S GG+ + E VA + +++ FS+ + LS D+ Sbjct 31052 RSVL----TR*PLEGRSRDGGLRVGEMERDCVAGDSAVSLRHFSVRIDE-LSNDEHADL- 31213 Query 202 KSLGFSPDAQD-EAAKAVSNLYKIFMERDATQVEINPLSEIEHDPTHKIMCTDA 254 L ++ Q E V+ L K ER+ +VE + ++ P HK+MC+D Sbjct 31214 --LSYNE*TQGVEVDTQVAWLNK--GERECVRVEFEDGTHLDVTPDHKVMCSDG 31363 Lambda K H a alpha 0.316 0.134 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2542380438 Database: X5.fasta Posted date: Nov 5, 2019 1:52 AM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40