RID: 3XJU0B6V013 Job Title:GAG_MLVF5 P26807 Capsid protein p30 Program: BLASTP Query: GAG_MLVF5 P26807 Capsid protein p30 ID: lcl|Query_48488(amino acid) Length: 263 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11796 535 535 100% 0.0 100.00 539 P26807.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11796 535 535 100% 0.0 100.00 627 P0DOH0.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11797 528 528 100% 0.0 98.86 626 P0DOH5.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11797 528 528 100% 0.0 98.86 538 P26806.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11798 525 525 100% 0.0 97.72 538 P26805.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11798 525 525 100% 0.0 97.72 626 P0DOH6.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Cas-Br-E mur... NA 11792 520 520 100% 0.0 96.96 536 P27460.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Cas-Br-E mur... NA 11792 520 520 100% 0.0 96.96 624 P0DOH4.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 538 538 100% 9e-179 100.00 1739 P26810.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 531 531 100% 3e-176 98.86 1738 P26809.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 528 528 100% 5e-175 97.72 1738 P26808.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 523 523 100% 5e-173 96.96 1733 P08361.2 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Moloney muri... NA 928306 456 456 100% 3e-159 94.30 538 P03332.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31687 451 451 100% 1e-157 93.92 537 P29167.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 11809 450 450 100% 5e-157 92.02 538 P03334.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... AKR (endogen... NA 11791 447 447 100% 4e-156 93.92 537 P03336.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Moloney muri... NA 882209 451 451 100% 4e-156 93.54 626 Q8UN02.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... HoMuLV murin... NA 11799 447 447 100% 5e-156 94.30 540 P21435.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... AKR (endogen... NA 11791 448 448 100% 4e-155 93.92 625 P0DOG8.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31688 442 442 100% 3e-154 94.30 536 P29168.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Duplan murin... NA 11794 437 437 100% 6e-152 93.16 529 P23090.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Radiation mu... NA 11787 435 435 100% 5e-151 92.78 537 P11269.3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Moloney muri... NA 928306 459 459 100% 2e-149 94.30 1738 P03355.5 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 373193 427 427 82% 5e-148 93.58 536 Q27ID9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Moloney muri... NA 31691 424 424 82% 7e-148 91.74 468 P32594.3 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356664 425 425 82% 4e-147 93.12 536 Q2F7I9.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356663 424 424 82% 6e-147 93.12 536 Q2F7J2.1 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 453 453 100% 6e-147 93.92 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 449 449 100% 9e-146 93.92 1734 P03356.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 436 436 100% 9e-141 92.78 1734 P11227.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 429 429 82% 4e-138 93.58 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 426 426 82% 3e-137 93.12 1733 Q2F7J3.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 426 426 82% 4e-137 93.12 1733 Q2F7J0.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline leuke... NA 11768 337 337 100% 5e-113 66.54 506 P10262.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11778 334 334 100% 1e-112 66.16 459 P03340.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline leuke... NA 11768 337 337 100% 3e-112 66.54 580 P0DOH3.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11778 334 334 100% 1e-111 66.16 536 P0DOH2.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 337 337 100% 4e-105 66.54 1712 P10273.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Baboon endog... NA 11764 310 310 87% 5e-102 66.81 537 P03341.4 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Baboon endog... NA 11764 310 310 87% 1e-95 66.81 1727 P10272.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Woolly monke... NA 11970 292 292 82% 3e-95 64.06 521 P03330.4 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gibbon ape l... NA 11840 291 291 82% 8e-95 63.59 520 P21416.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Koala retrov... NA 394239 287 287 82% 2e-93 62.67 521 Q9TTC2.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Woolly monke... NA 11970 293 293 82% 1e-89 64.06 1687 P03359.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Gibbon ape l... NA 11840 292 292 82% 3e-89 63.59 1686 P21414.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol;... Koala retrov... NA 394239 288 288 82% 5e-88 62.67 1687 Q9TTC1.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gardner-Arns... NA 11774 226 226 57% 9e-72 70.20 348 P03337.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Gardner-Arns... NA 11774 226 226 57% 5e-71 70.20 425 P0DOH1.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11777 218 218 54% 1e-68 71.33 340 P04322.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11777 218 218 54% 9e-68 71.33 414 P0DP83.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Finkel-Biski... NA 353765 172 172 41% 2e-51 78.70 310 P29175.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Snyder-Theil... NA 11780 164 164 37% 4e-48 75.76 297 P03338.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Snyder-Theil... NA 11780 164 164 37% 3e-47 75.76 371 P0DOG9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Avian spleen... NA 11899 110 110 35% 2e-27 56.38 313 P03342.1 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Abelson muri... NA 11788 43.9 43.9 7% 4e-04 90.00 235 P03333.3 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26807.3 Length: 539 Range 1: 217 to 479 Score:535 bits(1378), Expect:0.0, Method:Compositional matrix adjust., Identities:263/263(100%), Positives:263/263(100%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG Sbjct 217 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 276 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 277 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 336 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 337 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 396 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 397 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 456 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRRHREMSKLL Sbjct 457 RAEDEQREKERDRRRHREMSKLL 479 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P0DOH0.1 Length: 627 Range 1: 305 to 567 Score:535 bits(1377), Expect:0.0, Method:Compositional matrix adjust., Identities:263/263(100%), Positives:263/263(100%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG Sbjct 305 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 364 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 365 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 424 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 425 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 484 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 485 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 544 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRRHREMSKLL Sbjct 545 RAEDEQREKERDRRRHREMSKLL 567 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P0DOH5.1 Length: 626 Range 1: 304 to 566 Score:528 bits(1361), Expect:0.0, Method:Compositional matrix adjust., Identities:260/263(99%), Positives:261/263(99%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ+QYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG Sbjct 304 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 363 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 423 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 483 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 484 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 543 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAED QREKERDRRRHREMSKLL Sbjct 544 RAEDVQREKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26806.3 Length: 538 Range 1: 216 to 478 Score:528 bits(1361), Expect:0.0, Method:Compositional matrix adjust., Identities:260/263(99%), Positives:261/263(99%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ+QYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG Sbjct 216 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAED QREKERDRRRHREMSKLL Sbjct 456 RAEDVQREKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26805.3 Length: 538 Range 1: 216 to 478 Score:525 bits(1353), Expect:0.0, Method:Compositional matrix adjust., Identities:257/263(98%), Positives:261/263(99%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQFQYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVLLTHQPTWDDCQQLLG Sbjct 216 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLK+KTLGDLVREAEKIFNKRETPEEREER+RRETEEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERVRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDE+REKERDRRRHREMSKLL Sbjct 456 RAEDERREKERDRRRHREMSKLL 478 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P0DOH6.1 Length: 626 Range 1: 304 to 566 Score:525 bits(1352), Expect:0.0, Method:Compositional matrix adjust., Identities:257/263(98%), Positives:261/263(99%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQFQYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVLLTHQPTWDDCQQLLG Sbjct 304 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 363 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 423 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 483 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLK+KTLGDLVREAEKIFNKRETPEEREER+RRETEEKEERR Sbjct 484 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERVRRETEEKEERR 543 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDE+REKERDRRRHREMSKLL Sbjct 544 RAEDERREKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Cas-Br-E murine leukemia virus] Sequence ID: P27460.3 Length: 536 Range 1: 214 to 476 Score:520 bits(1339), Expect:0.0, Method:Compositional matrix adjust., Identities:255/263(97%), Positives:259/263(98%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVLLTHQPTWDDCQQLLG Sbjct 214 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPN+INDAFPLERPDWDYNTQRGRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERI+RETEEKEERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 453 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQ+EKERDRRRHREMSKLL Sbjct 454 RAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Cas-Br-E murine leukemia virus] Sequence ID: P0DOH4.1 Length: 624 Range 1: 302 to 564 Score:520 bits(1339), Expect:0.0, Method:Compositional matrix adjust., Identities:255/263(97%), Positives:259/263(98%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVLLTHQPTWDDCQQLLG Sbjct 302 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 361 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPN+INDAFPLERPDWDYNTQRGRNHLV YRQ Sbjct 362 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 421 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 422 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 481 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERI+RETEEKEERR Sbjct 482 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 541 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQ+EKERDRRRHREMSKLL Sbjct 542 RAEDEQKEKERDRRRHREMSKLL 564 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 217 to 479 Score:538 bits(1386), Expect:9e-179, Method:Compositional matrix adjust., Identities:263/263(100%), Positives:263/263(100%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG Sbjct 217 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 276 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 277 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 336 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 337 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 396 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 397 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 456 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRRHREMSKLL Sbjct 457 RAEDEQREKERDRRRHREMSKLL 479 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 216 to 478 Score:531 bits(1369), Expect:3e-176, Method:Compositional matrix adjust., Identities:260/263(99%), Positives:261/263(99%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ+QYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG Sbjct 216 PLRLGGNGQYQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAED QREKERDRRRHREMSKLL Sbjct 456 RAEDVQREKERDRRRHREMSKLL 478 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 216 to 478 Score:528 bits(1360), Expect:5e-175, Method:Compositional matrix adjust., Identities:257/263(98%), Positives:261/263(99%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQFQYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVLLTHQPTWDDCQQLLG Sbjct 216 PLRLGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLK+KTLGDLVREAEKIFNKRETPEEREER+RRETEEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERVRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDE+REKERDRRRHREMSKLL Sbjct 456 RAEDERREKERDRRRHREMSKLL 478 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 214 to 476 Score:523 bits(1347), Expect:5e-173, Method:Compositional matrix adjust., Identities:255/263(97%), Positives:259/263(98%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVLLTHQPTWDDCQQLLG Sbjct 214 PLRSGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLLTHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPN+INDAFPLERPDWDYNTQRGRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNEINDAFPLERPDWDYNTQRGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERI+RETEEKEERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIKRETEEKEERR 453 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQ+EKERDRRRHREMSKLL Sbjct 454 RAEDEQKEKERDRRRHREMSKLL 476 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03332.4 Length: 538 Range 1: 216 to 478 Score:456 bits(1172), Expect:3e-159, Method:Compositional matrix adjust., Identities:248/263(94%), Positives:256/263(97%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 216 PLRAGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPN+++ AFPLERPDWDY TQ GRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLK+KTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 R EDEQ+EKERDRRRHREMSKLL Sbjct 456 RTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Murine leukemia virus (strain BM5 ECO)] Sequence ID: P29167.3 Length: 537 Range 1: 215 to 477 Score:451 bits(1161), Expect:1e-157, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:250/263(95%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAP IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 395 SFIWQSAPAIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RA DEQREKERDRRR REMSKLL Sbjct 455 RAGDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Moloney murine sarcoma virus] Sequence ID: P03334.3 Length: 538 Range 1: 216 to 478 Score:450 bits(1157), Expect:5e-157, Method:Compositional matrix adjust., Identities:242/263(92%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 216 PLRTGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPN+++ AFPLERPDW+Y TQ GRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LL+AGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 336 LLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDL++KTLGDLVREAE+IFNKRETPEEREERIRRE EEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNKRETPEEREERIRREREEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 R EDEQ+EKERDRRRHREMS+LL Sbjct 456 RTEDEQKEKERDRRRHREMSRLL 478 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [AKR (endogenous) murine leukemia virus] Sequence ID: P03336.3 Length: 537 Range 1: 215 to 477 Score:447 bits(1151), Expect:4e-156, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN+++ AFPLERPDWDY TQRGRNHLV YRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE+IFNKRETPEEREER+RRETEEKEERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAE+EQ+EKERDRRRHREMSKLL Sbjct 455 RAEEEQKEKERDRRRHREMSKLL 477 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80; Contains: RecName: Full=Nextended-MA-p12; Contains: RecName: Full=CA-NC [Moloney murine leukemia virus neuropathogenic variant ts1-92b] Sequence ID: Q8UN02.2 Length: 626 Range 1: 304 to 566 Score:451 bits(1159), Expect:4e-156, Method:Compositional matrix adjust., Identities:246/263(94%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 304 PLRTGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 363 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPN+++ AFPLERPDW+Y TQ GRNHLV YRQ Sbjct 364 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVQYRQ 423 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM Sbjct 424 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 483 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLK+KTLGDLVREAE+IFNKRETPEEREERIRRETEEKEERR Sbjct 484 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAERIFNKRETPEEREERIRRETEEKEERR 543 Query 241 RAEDEQREKERDRRRHREMSKLL 263 R EDEQ+EKERDRRRHREMSKLL Sbjct 544 RTEDEQKEKERDRRRHREMSKLL 566 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [HoMuLV murine leukemia virus] Sequence ID: P21435.3 Length: 540 Range 1: 218 to 480 Score:447 bits(1151), Expect:5e-156, Method:Compositional matrix adjust., Identities:248/263(94%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSS+DLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 218 PLRTGGNGQLQYWPFSSADLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 277 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN+INDAFPLERPDWDY T GRNHLV YRQ Sbjct 278 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEINDAFPLERPDWDYTTPAGRNHLVLYRQ 337 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQ+AGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 338 LLLAGLQHAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 397 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE+IFNKRETPEEREERIRRETEEKEERR Sbjct 398 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERIRRETEEKEERR 457 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAE+EQREKERDRRRHREMSKLL Sbjct 458 RAENEQREKERDRRRHREMSKLL 480 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [AKR (endogenous) murine leukemia virus] Sequence ID: P0DOG8.1 Length: 625 Range 1: 303 to 565 Score:448 bits(1153), Expect:4e-155, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 303 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 362 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN+++ AFPLERPDWDY TQRGRNHLV YRQ Sbjct 363 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 422 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 423 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 482 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE+IFNKRETPEEREER+RRETEEKEERR Sbjct 483 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 542 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAE+EQ+EKERDRRRHREMSKLL Sbjct 543 RAEEEQKEKERDRRRHREMSKLL 565 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Murine leukemia virus (strain DEF27)] Sequence ID: P29168.3 Length: 536 Range 1: 214 to 476 Score:442 bits(1138), Expect:3e-154, Method:Compositional matrix adjust., Identities:248/263(94%), Positives:252/263(95%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 214 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGP+ESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPSESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 453 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRRHREMSK L Sbjct 454 RAEDEQREKERDRRRHREMSKFL 476 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Duplan murine leukemia virus] Sequence ID: P23090.3 Length: 529 Range 1: 207 to 469 Score:437 bits(1123), Expect:6e-152, Method:Compositional matrix adjust., Identities:245/263(93%), Positives:251/263(95%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 207 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 266 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDW+Y+T GRNHLV YRQ Sbjct 267 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWNYSTPEGRNHLVLYRQ 326 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGL NAGRSPTNLAKVK ITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 327 LLLAGLHNAGRSPTNLAKVKRITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 386 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 387 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 446 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRRHREMSK L Sbjct 447 RAEDEQREKERDRRRHREMSKFL 469 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Radiation murine leukemia virus] Sequence ID: P11269.3 Length: 537 Range 1: 215 to 477 Score:435 bits(1118), Expect:5e-151, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 454 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRR REMSKLL Sbjct 455 RAEDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; AltName: Full=p14; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Moloney murine leukemia virus isolate Shinnick] Sequence ID: P03355.5 Length: 1738 Range 1: 216 to 478 Score:459 bits(1182), Expect:2e-149, Method:Compositional matrix adjust., Identities:248/263(94%), Positives:256/263(97%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 216 PLRAGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPN+++ AFPLERPDWDY TQ GRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWDYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 336 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLK+KTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 396 SFIWQSAPDIGRKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 455 Query 241 RAEDEQREKERDRRRHREMSKLL 263 R EDEQ+EKERDRRRHREMSKLL Sbjct 456 RTEDEQKEKERDRRRHREMSKLL 478 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62] Sequence ID: Q27ID9.1 Length: 536 Range 1: 214 to 431 Score:427 bits(1098), Expect:5e-148, Method:Compositional matrix adjust., Identities:204/218(94%), Positives:209/218(95%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Moloney murine sarcoma virus (strain TS110)] Sequence ID: P32594.3 Length: 468 Range 1: 216 to 433 Score:424 bits(1091), Expect:7e-148, Method:Compositional matrix adjust., Identities:200/218(92%), Positives:212/218(97%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWK+NNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 216 PLRTGGNGQLQYWPFSSSDLYNWKSNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 275 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG+DGRPTQLPN+++ AFPLERPDW+Y TQ GRNHLVHYRQ Sbjct 276 TLLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQ 335 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LL+AGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 336 LLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 395 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDL++KTLGDLVREAE+IFNK Sbjct 396 SFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNK 433 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7I9.1 Length: 536 Range 1: 214 to 431 Score:425 bits(1092), Expect:4e-147, Method:Compositional matrix adjust., Identities:203/218(93%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDW Y T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J2.1 Length: 536 Range 1: 214 to 431 Score:424 bits(1091), Expect:6e-147, Method:Compositional matrix adjust., Identities:203/218(93%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEA KAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 215 to 477 Score:453 bits(1165), Expect:6e-147, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:250/263(95%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAP IGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR Sbjct 395 SFIWQSAPAIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RA DEQREKERDRRR REMSKLL Sbjct 455 RAGDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 215 to 477 Score:449 bits(1156), Expect:9e-146, Method:Compositional matrix adjust., Identities:247/263(94%), Positives:255/263(96%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN+++ AFPLERPDWDY TQRGRNHLV YRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVDAAFPLERPDWDYTTQRGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAE+IFNKRETPEEREER+RRETEEKEERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAERIFNKRETPEEREERVRRETEEKEERR 454 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAE+EQ+EKERDRRRHREMSKLL Sbjct 455 RAEEEQKEKERDRRRHREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 215 to 477 Score:436 bits(1121), Expect:9e-141, Method:Compositional matrix adjust., Identities:244/263(93%), Positives:248/263(94%), Gaps:0/263(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 274 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 275 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNSAFPLERPDWDYTTPEGRNHLVLYRQ 334 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPED GQET+V+M Sbjct 335 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDHGQETSVSM 394 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFIWQSAPDIGRKLERLEDLKSKTL DLVREAEKIFNKRETPEEREER RRETEE EERR Sbjct 395 SFIWQSAPDIGRKLERLEDLKSKTLRDLVREAEKIFNKRETPEEREERFRRETEENEERR 454 Query 241 RAEDEQREKERDRRRHREMSKLL 263 RAEDEQREKERDRRR REMSKLL Sbjct 455 RAEDEQREKERDRRRQREMSKLL 477 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 214 to 431 Score:429 bits(1102), Expect:4e-138, Method:Compositional matrix adjust., Identities:204/218(94%), Positives:209/218(95%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 214 to 431 Score:426 bits(1096), Expect:3e-137, Method:Compositional matrix adjust., Identities:203/218(93%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEA KAVRG DGRPTQLPN++N AFPLERPDWDY T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEAGKAVRGNDGRPTQLPNEVNAAFPLERPDWDYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 214 to 431 Score:426 bits(1096), Expect:4e-137, Method:Compositional matrix adjust., Identities:203/218(93%), Positives:208/218(95%), Gaps:0/218(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GG+GQ QYWPFSSSDLYNWKNNNPSFSEDP KLTALIESVL+THQPTWDDCQQLLG Sbjct 214 PLRMGGDGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLG 273 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 TLLTGEEKQRVLLEARKAVRG DGRPTQLPN++N AFPLERPDW Y T GRNHLV YRQ Sbjct 274 TLLTGEEKQRVLLEARKAVRGNDGRPTQLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQ 333 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNV+M Sbjct 334 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSM 393 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 218 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK Sbjct 394 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNK 431 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Feline leukemia virus] Sequence ID: P10262.3 Length: 506 Range 1: 198 to 445 Score:337 bits(864), Expect:5e-113, Method:Compositional matrix adjust., Identities:175/263(67%), Positives:210/263(79%), Gaps:15/263(5%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 427 Query 241 RAEDEQREKERDRRRHREMSKLL 263 QR++ERD++RH+EM+K+L Sbjct 428 -----QRQEERDKKRHKEMTKVL 445 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P03340.2 Length: 459 Range 1: 198 to 445 Score:334 bits(857), Expect:1e-112, Method:Compositional matrix adjust., Identities:174/263(66%), Positives:209/263(79%), Gaps:15/263(5%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK +NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLT EE+QRVLLEARK V GEDGRPTQLPN I++AFPL RP+WD+ T GR HL YRQ Sbjct 258 ALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGL+ A R PTNLA+VK + QG E+P++FLERLKEAYR YTPYDPEDPGQ +V + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 427 Query 241 RAEDEQREKERDRRRHREMSKLL 263 QR++ERD++RH+EM+K+L Sbjct 428 -----QRQEERDKKRHKEMTKVL 445 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline leukemia virus] Sequence ID: P0DOH3.1 Length: 580 Range 1: 272 to 519 Score:337 bits(865), Expect:3e-112, Method:Compositional matrix adjust., Identities:175/263(67%), Positives:210/263(79%), Gaps:15/263(5%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 391 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 392 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 451 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 452 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 501 Query 241 RAEDEQREKERDRRRHREMSKLL 263 QR++ERD++RH+EM+K+L Sbjct 502 -----QRQEERDKKRHKEMTKVL 519 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P0DOH2.1 Length: 536 Range 1: 275 to 522 Score:334 bits(857), Expect:1e-111, Method:Compositional matrix adjust., Identities:174/263(66%), Positives:209/263(79%), Gaps:15/263(5%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK +NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 275 PLREGPNNRPQYWPFSASDLYNWKLHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 334 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLT EE+QRVLLEARK V GEDGRPTQLPN I++AFPL RP+WD+ T GR HL YRQ Sbjct 335 ALLTAEERQRVLLEARKQVPGEDGRPTQLPNVIDEAFPLTRPNWDFATPAGREHLRLYRQ 394 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGL+ A R PTNLA+VK + QG E+P++FLERLKEAYR YTPYDPEDPGQ +V + Sbjct 395 LLLAGLRGAARRPTNLAQVKQVVQGKEETPASFLERLKEAYRMYTPYDPEDPGQAASVIL 454 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 455 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 504 Query 241 RAEDEQREKERDRRRHREMSKLL 263 QR++ERD++RH+EM+K+L Sbjct 505 -----QRQEERDKKRHKEMTKVL 522 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 198 to 445 Score:337 bits(864), Expect:4e-105, Method:Compositional matrix adjust., Identities:175/263(67%), Positives:210/263(79%), Gaps:15/263(5%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLLAGL+ A R PTNLA+VK + QG E+P+AFLERLKEAYR YTPYDPEDPGQ +V + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPAAFLERLKEAYRMYTPYDPEDPGQAASVIL 377 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERIRRETEEKEERR 240 SFI+QS+PDI KL+RLE L+ TL DL++EAEKI+NKRETPEEREER+ Sbjct 378 SFIYQSSPDIRNKLQRLEGLQGFTLSDLLKEAEKIYNKRETPEEREERLW---------- 427 Query 241 RAEDEQREKERDRRRHREMSKLL 263 QR++ERD++RH+EM+K+L Sbjct 428 -----QRQEERDKKRHKEMTKVL 445 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Baboon endogenous virus strain M7] Sequence ID: P03341.4 Length: 537 Range 1: 227 to 454 Score:310 bits(793), Expect:5e-102, Method:Compositional matrix adjust., Identities:153/229(67%), Positives:181/229(79%), Gaps:1/229(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR N QYWPFS+SDLYNWK +NPSFS+DP LT+LIES+LLTHQPTWDDCQQLL Sbjct 227 PLRTV-NRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQ 285 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLT EE+QRVLLEARK V G G PTQLPN+I++ FPL RPDWDY T GR L YRQ Sbjct 286 VLLTTEERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQ 345 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLAGL+ AG+ PTNLAKV+ ITQG +ESP+AF+ERL E +R YTP+DPE P + VAM Sbjct 346 ALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAM 405 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERI 229 SFI Q+A DI KL+RL+ +++ L +LVREAEK++NKRETPEERE R+ Sbjct 406 SFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARL 454 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Baboon endogenous virus strain M7] Sequence ID: P10272.2 Length: 1727 Range 1: 227 to 454 Score:310 bits(795), Expect:1e-95, Method:Compositional matrix adjust., Identities:153/229(67%), Positives:181/229(79%), Gaps:1/229(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR N QYWPFS+SDLYNWK +NPSFS+DP LT+LIES+LLTHQPTWDDCQQLL Sbjct 227 PLRTV-NRTIQYWPFSASDLYNWKTHNPSFSQDPQALTSLIESILLTHQPTWDDCQQLLQ 285 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLT EE+QRVLLEARK V G G PTQLPN+I++ FPL RPDWDY T GR L YRQ Sbjct 286 VLLTTEERQRVLLEARKNVPGPGGLPTQLPNEIDEGFPLTRPDWDYETAPGRESLRIYRQ 345 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 LLAGL+ AG+ PTNLAKV+ ITQG +ESP+AF+ERL E +R YTP+DPE P + VAM Sbjct 346 ALLAGLKGAGKRPTNLAKVRTITQGKDESPAAFMERLLEGFRMYTPFDPEAPEHKATVAM 405 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFNKRETPEEREERI 229 SFI Q+A DI KL+RL+ +++ L +LVREAEK++NKRETPEERE R+ Sbjct 406 SFIDQAALDIKGKLQRLDGIQTHGLQELVREAEKVYNKRETPEEREARL 454 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Woolly monkey sarcoma virus] Sequence ID: P03330.4 Length: 521 Range 1: 204 to 420 Score:292 bits(747), Expect:3e-95, Method:Compositional matrix adjust., Identities:139/217(64%), Positives:170/217(78%), Gaps:0/217(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 P G QYWPFSS+DLYNWK+N+PSFSE+PA LT L+ES++ +HQPTWDDCQQLL Sbjct 204 PAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQ 263 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 L T EE++R+LLEARK V G++G PTQL N IN+AFPL RP WDYNT GR L+ YR+ Sbjct 264 ILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRERLLVYRR 323 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP + GQ+ VAM Sbjct 324 TLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEGQQAAVAM 383 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFN 217 +FI QSAPDI +KL+RLE L+ +L DLVREAEK+++ Sbjct 384 AFIGQSAPDIKKKLQRLEGLQDYSLQDLVREAEKVYH 420 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Gibbon ape leukemia virus] Sequence ID: P21416.3 Length: 520 Range 1: 203 to 419 Score:291 bits(744), Expect:8e-95, Method:Compositional matrix adjust., Identities:138/217(64%), Positives:169/217(77%), Gaps:0/217(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 P G QYWPFSS+DLYNWK+N+PSFSE+PA LT L+ES++ +HQPTWDDCQQLL Sbjct 203 PAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQ 262 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 L T EE++R+LLEARK V G++G PTQL N IN+AFPL RP WDYNT GR L+ YR+ Sbjct 263 ILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRR 322 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAM Sbjct 323 TLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAM 382 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFN 217 +FI QSAPDI +KL+RLE L+ +L DLV+EAEK+++ Sbjct 383 AFIGQSAPDIKKKLQRLEGLQDYSLQDLVKEAEKVYH 419 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Koala retrovirus] Sequence ID: Q9TTC2.3 Length: 521 Range 1: 204 to 420 Score:287 bits(735), Expect:2e-93, Method:Compositional matrix adjust., Identities:136/217(63%), Positives:167/217(76%), Gaps:0/217(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 P G QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL Sbjct 204 PAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQ 263 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 L T EE++R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ Sbjct 264 VLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRR 323 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAM Sbjct 324 TLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAM 383 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFN 217 SFI QSAPDI +KL+RLE L+ +L DL++EAEK+++ Sbjct 384 SFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYH 420 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=p80; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p46 [Woolly monkey sarcoma virus] Sequence ID: P03359.2 Length: 1687 Range 1: 204 to 420 Score:293 bits(750), Expect:1e-89, Method:Compositional matrix adjust., Identities:139/217(64%), Positives:170/217(78%), Gaps:0/217(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 P G QYWPFSS+DLYNWK+N+PSFSE+PA LT L+ES++ +HQPTWDDCQQLL Sbjct 204 PAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQ 263 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 L T EE++R+LLEARK V G++G PTQL N IN+AFPL RP WDYNT GR L+ YR+ Sbjct 264 ILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPQWDYNTAAGRERLLVYRR 323 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP + GQ+ VAM Sbjct 324 TLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSEEGQQAAVAM 383 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFN 217 +FI QSAPDI +KL+RLE L+ +L DLVREAEK+++ Sbjct 384 AFIGQSAPDIKKKLQRLEGLQDYSLQDLVREAEKVYH 420 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Gibbon ape leukemia virus] Sequence ID: P21414.2 Length: 1686 Range 1: 203 to 419 Score:292 bits(747), Expect:3e-89, Method:Compositional matrix adjust., Identities:138/217(64%), Positives:169/217(77%), Gaps:0/217(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 P G QYWPFSS+DLYNWK+N+PSFSE+PA LT L+ES++ +HQPTWDDCQQLL Sbjct 203 PAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQ 262 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 L T EE++R+LLEARK V G++G PTQL N IN+AFPL RP WDYNT GR L+ YR+ Sbjct 263 ILFTTEERERILLEARKNVLGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRR 322 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAM Sbjct 323 TLVAGLKGAARRPTNLAKVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAM 382 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFN 217 +FI QSAPDI +KL+RLE L+ +L DLV+EAEK+++ Sbjct 383 AFIGQSAPDIKKKLQRLEGLQDYSLQDLVKEAEKVYH 419 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr125Pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease/Reverse transcriptase/ribonuclease H; AltName: Full=p87; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=p42 [Koala retrovirus] Sequence ID: Q9TTC1.2 Length: 1687 Range 1: 204 to 420 Score:288 bits(738), Expect:5e-88, Method:Compositional matrix adjust., Identities:136/217(63%), Positives:167/217(76%), Gaps:0/217(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 P G QYWPFSS+DLYNWK+N+PSFSE+P LT L+ES++ +HQPTWDDCQQLL Sbjct 204 PAEPNGLVPLQYWPFSSADLYNWKSNHPSFSENPTGLTGLLESLMFSHQPTWDDCQQLLQ 263 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 L T EE++R+LLEARK V G +G PTQL N IN+AFPL RP WD+NT GR L+ YR+ Sbjct 264 VLFTTEERERILLEARKNVLGVNGAPTQLENLINEAFPLNRPQWDHNTAEGRERLLVYRR 323 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETNVAM 180 L+AGL+ A R PTNLAKV+ + QGP E PS FLERL EAYRRYTP+DP GQ+ VAM Sbjct 324 TLVAGLKGAARRPTNLAKVREVLQGPTEPPSVFLERLMEAYRRYTPFDPSSEGQKAAVAM 383 Query 181 SFIWQSAPDIGRKLERLEDLKSKTLGDLVREAEKIFN 217 SFI QSAPDI +KL+RLE L+ +L DL++EAEK+++ Sbjct 384 SFIGQSAPDIKKKLQRLEGLQDHSLQDLIKEAEKVYH 420 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Gardner-Arnstein feline sarcoma virus] Sequence ID: P03337.2 Length: 348 Range 1: 198 to 348 Score:226 bits(576), Expect:9e-72, Method:Compositional matrix adjust., Identities:106/151(70%), Positives:124/151(82%), Gaps:0/151(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPS 151 LLLAGL+ A R PTNLA+VK + QG E+P+ Sbjct 318 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 348 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Gardner-Arnstein feline sarcoma virus] Sequence ID: P0DOH1.1 Length: 425 Range 1: 275 to 425 Score:226 bits(577), Expect:5e-71, Method:Compositional matrix adjust., Identities:106/151(70%), Positives:124/151(82%), Gaps:0/151(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 275 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 334 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 335 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 394 Query 121 LLLAGLQNAGRSPTNLAKVKGITQGPNESPS 151 LLLAGL+ A R PTNLA+VK + QG E+P+ Sbjct 395 LLLAGLRGAARRPTNLAQVKQVVQGKEETPA 425 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P04322.2 Length: 340 Range 1: 198 to 340 Score:218 bits(555), Expect:1e-68, Method:Compositional matrix adjust., Identities:102/143(71%), Positives:118/143(82%), Gaps:0/143(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 317 Query 121 LLLAGLQNAGRSPTNLAKVKGIT 143 LLLAGL+ A R PTNLA+VK + Sbjct 318 LLLAGLRGAARRPTNLAQVKQVV 340 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P0DP83.1 Length: 414 Range 1: 272 to 414 Score:218 bits(555), Expect:9e-68, Method:Compositional matrix adjust., Identities:102/143(71%), Positives:118/143(82%), Gaps:0/143(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNTQRGRNHLVHYRQ 120 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL RP+WD+ T GR HL YRQ Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPLTRPNWDFATPAGREHLRLYRQ 391 Query 121 LLLAGLQNAGRSPTNLAKVKGIT 143 LLLAGL+ A R PTNLA+VK + Sbjct 392 LLLAGLRGAARRPTNLAQVKQVV 414 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Finkel-Biskis-Jinkins murine sarcoma virus] Sequence ID: P29175.3 Length: 310 Range 1: 215 to 308 Score:172 bits(437), Expect:2e-51, Method:Compositional matrix adjust., Identities:85/108(79%), Positives:88/108(81%), Gaps:14/108(12%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR GGNGQ KNNNPSFSEDP KLTALIESVL THQPTWDDCQQLLG Sbjct 215 PLRLGGNGQ--------------KNNNPSFSEDPGKLTALIESVLTTHQPTWDDCQQLLG 260 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPLERPDWDYNT 108 TLLTGEEKQRVLLEARKAVRG DGRPTQ+PN++N AFPLERPDWDY T Sbjct 261 TLLTGEEKQRVLLEARKAVRGNDGRPTQMPNEVNAAFPLERPDWDYTT 308 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Snyder-Theilen feline sarcoma virus] Sequence ID: P03338.2 Length: 297 Range 1: 198 to 296 Score:164 bits(415), Expect:4e-48, Method:Compositional matrix adjust., Identities:75/99(76%), Positives:86/99(86%), Gaps:0/99(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 198 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 257 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPL 99 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL Sbjct 258 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPL 296 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Snyder-Theilen feline sarcoma virus] Sequence ID: P0DOG9.1 Length: 371 Range 1: 272 to 370 Score:164 bits(414), Expect:3e-47, Method:Compositional matrix adjust., Identities:75/99(76%), Positives:86/99(86%), Gaps:0/99(0%) Query 1 PLRQGGNGQFQYWPFSSSDLYNWKNNNPSFSEDPAKLTALIESVLLTHQPTWDDCQQLLG 60 PLR+G N + QYWPFS+SDLYNWK++NP FS+DP LT LIES+L+THQPTWDDCQQLL Sbjct 272 PLREGPNNRPQYWPFSASDLYNWKSHNPPFSQDPVALTNLIESILVTHQPTWDDCQQLLQ 331 Query 61 TLLTGEEKQRVLLEARKAVRGEDGRPTQLPNDINDAFPL 99 LLTGEE+QRVLLEARK V GEDGRPTQLPN I++ FPL Sbjct 332 ALLTGEERQRVLLEARKQVPGEDGRPTQLPNVIDETFPL 370 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Avian spleen necrosis virus] Sequence ID: P03342.1 Length: 313 Range 1: 217 to 310 Score:110 bits(275), Expect:2e-27, Method:Compositional matrix adjust., Identities:53/94(56%), Positives:66/94(70%), Gaps:1/94(1%) Query 12 YWPFSSSDLYNWKNNNPS-FSEDPAKLTALIESVLLTHQPTWDDCQQLLGTLLTGEEKQR 70 Y PF++SDLYNWKN NPS FS+ P ++ +L+ESV THQPTWDDCQQLL TL T EE++R Sbjct 217 YVPFTTSDLYNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDDCQQLLRTLFTTEERER 276 Query 71 VLLEARKAVRGEDGRPTQLPNDINDAFPLERPDW 104 V E+R+ VR + G +I FP RPDW Sbjct 277 VRTESRREVRNDQGVQVTDEREIEAQFPATRPDW 310 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; Contains: RecName: Full=Capsid protein p30; Short=CA [Abelson murine leukemia virus] Sequence ID: P03333.3 Length: 235 Range 1: 216 to 235 Score:43.9 bits(102), Expect:4e-04, Method:Compositional matrix adjust., Identities:18/20(90%), Positives:18/20(90%), Gaps:0/20(0%) Query 1 PLRQGGNGQFQYWPFSSSDL 20 PLR GGNGQ QYWPFSSSDL Sbjct 216 PLRTGGNGQLQYWPFSSSDL 235