RID: AYPXXTPE013 Job Title:Protease_nsP2 from POLN_EEVVC Program: BLASTP Query: Protease_nsP2 from POLN_EEVVC ID: lcl|Query_42089(amino acid) Length: 794 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 1669 1669 100% 0.0 100.00 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 1643 1643 100% 0.0 98.36 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 1588 1588 100% 0.0 93.70 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 1586 1586 100% 0.0 93.83 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 1586 1586 100% 0.0 93.83 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 1229 1229 99% 0.0 73.14 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 1214 1214 99% 0.0 72.13 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 1213 1213 99% 0.0 72.26 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 1212 1212 99% 0.0 73.27 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 983 983 100% 0.0 59.00 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 980 980 100% 0.0 58.88 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 967 967 100% 0.0 58.07 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 962 962 100% 0.0 57.88 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 944 944 100% 0.0 56.70 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 941 941 100% 0.0 57.32 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 940 940 100% 0.0 56.45 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 939 939 100% 0.0 56.45 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 939 939 100% 0.0 56.45 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 936 936 100% 0.0 56.30 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 922 922 96% 0.0 58.91 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 897 897 98% 0.0 56.09 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 889 889 98% 0.0 55.60 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 820 820 98% 0.0 52.88 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 651 651 98% 0.0 43.77 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 648 648 98% 0.0 44.04 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 81.6 81.6 30% 2e-14 30.45 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 80.9 80.9 31% 3e-14 28.25 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 77.4 77.4 33% 3e-13 27.46 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 70.9 70.9 31% 4e-11 26.22 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 69.7 69.7 31% 8e-11 28.09 1616 P90211.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 69.3 69.3 31% 1e-10 26.22 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 69.3 69.3 31% 1e-10 26.22 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 69.3 69.3 31% 1e-10 26.22 1616 P03587.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 66.2 66.2 31% 1e-09 25.66 1629 P89202.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 64.7 64.7 34% 3e-09 25.50 1601 Q88920.1 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 63.9 63.9 30% 5e-09 28.72 1694 Q05983.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 62.8 62.8 31% 1e-08 24.34 1615 A0A0S2T050.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 62.4 62.4 31% 1e-08 26.32 1612 P89657.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 62.4 62.4 31% 1e-08 26.32 1612 P29098.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 61.6 61.6 33% 2e-08 25.62 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 60.1 60.1 31% 7e-08 25.84 1616 Q98745.1 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 59.7 59.7 30% 1e-07 26.39 1812 Q9QBU0.3 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 59.7 59.7 31% 1e-07 26.04 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 58.9 58.9 31% 1e-07 25.47 1616 Q9YQ08.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 58.5 58.5 31% 2e-07 25.47 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 58.2 58.2 31% 2e-07 25.47 1616 O93058.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 58.2 58.2 30% 3e-07 24.63 3094 Q08534.2 RecName: Full=Replication protein 1a; Includes: RecName:... Pelargonium ... NA 650488 57.0 57.0 19% 5e-07 30.00 962 Q9DUT3.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 31746 56.6 56.6 31% 8e-07 25.09 1616 P30738.2 RecName: Full=Replicase large subunit; AltName: Full=209 kDa... Soil-borne w... NA 652673 55.5 55.5 27% 2e-06 28.10 1828 Q89249.1 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 53.9 53.9 33% 5e-06 24.04 1672 Q84687.2 RecName: Full=Replication protein 1a; Includes: RecName:... Tobacco stre... NA 12318 52.0 52.0 28% 2e-05 26.88 1094 P89680.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117114 51.2 51.2 12% 3e-05 34.91 993 Q66121.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117124 50.8 50.8 12% 4e-05 33.96 993 O40976.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117113 50.8 50.8 12% 4e-05 33.96 993 Q83270.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12307 50.8 50.8 12% 4e-05 33.96 993 P17769.2 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12309 50.8 50.8 12% 4e-05 33.96 993 P20122.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12312 50.4 50.4 14% 6e-05 34.13 993 Q83264.1 RecName: Full=Replication protein 1a; Includes: RecName:... Brome mosaic... NA 12302 50.4 50.4 32% 6e-05 26.42 961 P03588.1 RecName: Full=Replication protein 1a; Includes: RecName:... Olive latent... NA 650489 48.9 48.9 17% 1e-04 30.00 908 Q83943.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12310 48.9 48.9 12% 2e-04 33.02 991 P06011.1 RecName: Full=Replication protein 1a; Includes: RecName:... Alfalfa mosa... NA 12322 48.5 48.5 30% 2e-04 25.94 1126 P03589.1 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 12298 48.5 48.5 30% 2e-04 27.48 1707 P05080.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 652939 48.5 48.5 30% 2e-04 27.48 1707 Q9J942.2 RecName: Full=Replication protein 1a; Includes: RecName:... Tomato asper... NA 12315 47.8 47.8 12% 4e-04 29.25 993 P28931.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cowpea chlor... NA 12303 47.4 47.4 22% 4e-04 30.10 958 P27752.1 RecName: Full=Replication protein 1a; Includes: RecName:... Peanut stunt... NA 12314 46.2 46.2 12% 0.001 31.13 1005 P28726.1 RecName: Full=Replication protein 1a; Includes: RecName:... Broad bean m... NA 12301 44.3 44.3 17% 0.004 27.74 966 Q00020.1 RecName: Full=RNA replication protein; Includes: RecName:... Citrus lepro... NA 686950 43.5 43.5 14% 0.008 27.20 2512 Q1KZ59.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Lettuce infe... NA 651355 41.2 41.2 12% 0.038 31.19 2379 Q83045.2 RecName: Full=Replicase polyprotein 1a; Contains: RecName:... Lettuce infe... NA 651355 41.2 41.2 12% 0.039 31.19 1873 Q83044.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 536 to 1329 Score:1669 bits(4323), Expect:0.0, Method:Compositional matrix adjust., Identities:794/794(100%), Positives:794/794(100%), Gaps:0/794(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 895 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 1135 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR Sbjct 1136 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 1195 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 781 TNIYTGSRLHEAGC 794 TNIYTGSRLHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 536 to 1329 Score:1643 bits(4254), Expect:0.0, Method:Compositional matrix adjust., Identities:781/794(98%), Positives:787/794(99%), Gaps:0/794(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPRGLIKVTSY GEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTK KK+DLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYKGNEIMTAAASQGLTRK VYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVR+FGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 SIRNNHWDNSPSPNMYGLN EVVRQLSRRYPQLPRAVTTGR YDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 PVNRRLPHALVTQHAD+PPSDFSAFVSKLKGRTVLVVGEKM+ISGK VDWLSETPD+TFR Sbjct 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 ARLDLGIP+ELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 781 TNIYTGSRLHEAGC 794 TNIYTGS LHEAGC Sbjct 1316 TNIYTGSGLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 536 to 1329 Score:1588 bits(4112), Expect:0.0, Method:Compositional matrix adjust., Identities:744/794(94%), Positives:779/794(98%), Gaps:0/794(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVL+SEKL+CIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVEPYHGKVVVPEG AIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 + VKPSEH+GEYLYDID+KQCVKKELV+GLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVK++KGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GCK+PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKYPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNP+++KIEIDTTGSTKPK+DDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYKGNE+MTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED+I Sbjct 896 GWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTAKYPG+FTAT+EEWQAEHDAIMRHILE+PDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 ALVPVLKTAGID+TTEQWNTVDYF+ DKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGR YDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 PVNRRLPHALV H ++P SDFS+FVSKLKGRTVLVVGEK+S+ GKTVDWLS+ P++TFR Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKTVDWLSDRPEATFR 1195 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 ARLDLGIP ++PKYDI+F+NVRT Y+YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYGYADRASESIIGA+ARQFKFSRVCKPK S EETEVLFVFIG+DRK RTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 TNIYTGSRLHEAGC 794 TNIYTGSRLHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 536 to 1329 Score:1586 bits(4107), Expect:0.0, Method:Compositional matrix adjust., Identities:745/794(94%), Positives:776/794(97%), Gaps:0/794(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVL+SEKL+CIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVEPYHGKVVVPEG AIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 + VKPSEH+GEYLYDID+KQCVKKELV+GLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 TQVFHKSISRRCTKSVTSVVSTLFYDK+MRTTNP+++KI IDTTGSTKPK+DDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED+I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTAKYPG+FTAT+EEWQAEHDAIMRHILE+PDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 ALVPVLKTAGID+TTEQWNTVDYF+ DKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAV TGR YDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 PVNRRLPHALV H ++P SDFS+FVSKLKGRTVLVVGEK+S+ GK VDWLS+ P++TFR Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFR 1195 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 ARLDLGIP ++PKYDI+FVNVRT Y+YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYGYADRASESIIGA+ARQFKFSRVCKPK S EETEVLFVFIG+DRK RTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 TNIYTGSRLHEAGC 794 TNIYTGSRLHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 536 to 1329 Score:1586 bits(4106), Expect:0.0, Method:Compositional matrix adjust., Identities:745/794(94%), Positives:775/794(97%), Gaps:0/794(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVL+SEKL+CIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVEPYHGKVVVPEG AIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 + VKPSEH+GEYLYDID+KQCVKKELV+GLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNP+++KI IDTTGSTKPK+DDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED+I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIK LTAKYPG+FTAT+EEWQAEHDAIMRHILE+PDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 ALVPVLKTAGID+TTEQWNTVDYF+ DKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAV TGR YDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 PVNRRLPHALV H ++P SDFS+FVSKLKGRTVLVVGEK+S+ GK VDWLS+ P++TFR Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKKVDWLSDQPEATFR 1195 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 ARLDLGIP ++PKYDIVF+NVRT Y+YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYGYADRASESIIGA+ARQFKFSRVCKPK S EETEVLFVFIG+DRK RTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 TNIYTGSRLHEAGC 794 TNIYTGSRLHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 534 to 1326 Score:1229 bits(3179), Expect:0.0, Method:Compositional matrix adjust., Identities:580/793(73%), Positives:664/793(83%), Gaps:0/793(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 VEPYHG+V+VP G AIP+ DFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYY 653 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +VVK +E + EY++DID K+CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KH V+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHSVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 T+V+HKSISRRCTK+VTS+VSTLFYDKRMRT NP + KI IDTT +TKP KDD+ILTCFR Sbjct 834 TEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTCFR 893 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTA YPG+FTAT+EEWQAEHDAIM ILE P +DVFQNK NVCWAK Sbjct 954 VWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCWAK 1013 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 AL PVL TA I LT QW T+ FK+DKA+S E+ LN C RFFG+D+DSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 + N HWDNSP PNMYGL ++L+RRYP + +AV TGR D+ T T+++Y+P IN+V Sbjct 1074 TYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTIKDYNPLINVV 1133 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 P+NRRLPH+LV H D+S V+K+ G+TVLVVG M+I GK V+ L +P T++ Sbjct 1134 PLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVVGTPMNIPGKRVETLGPSPQCTYK 1193 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 A LDLGIP+ L KYDI+F+NVRT YR+HHYQQCEDHAI SMLT+KA HLN GGTC+++ Sbjct 1194 AELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCIAL 1253 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLQDQDRLSVVL 1313 Query 781 TNIYTGSRLHEAG 793 NIY GS HEAG Sbjct 1314 NNIYQGSTQHEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 534 to 1326 Score:1214 bits(3141), Expect:0.0, Method:Compositional matrix adjust., Identities:572/793(72%), Positives:662/793(83%), Gaps:0/793(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 VEPYHG+V+VP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGALNTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V++ E E EY++DID K+CVKK + L G+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+DV ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLN 773 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDKRMRT NP KI IDTT +TKP KDD+ILTCFR Sbjct 834 TEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTCFR 893 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+AT+EEWQAEHDAIM+ +LE P +DV+QNK +VCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCWAK 1013 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 AL PVL TA I LT QW T+ FK+DKA S E+ LN LC RFFG+D+DSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR D+ T T+R+Y+P IN+V Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTIRDYNPMINVV 1133 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 P+NRRLPH+LV H ++S +SKL G+T+LV+G +++ GK V+ L P T++ Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVIGTPINVPGKRVETLGPGPQCTYK 1193 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 A LDLGIPS + KYDI+FVNVRT Y++HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1194 ADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSVVL 1313 Query 781 TNIYTGSRLHEAG 793 NIY GS +EAG Sbjct 1314 NNIYQGSTQYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 534 to 1326 Score:1213 bits(3139), Expect:0.0, Method:Compositional matrix adjust., Identities:573/793(72%), Positives:662/793(83%), Gaps:0/793(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 594 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 653 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V++ SE + EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 T+V+HKSISRRCTK+VT++VSTLFYDKRMRT NP KI IDTT +TKP++DD+ILTCFR Sbjct 834 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 893 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 1013 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 AL PVL TA I LT QW T+ FK+DKA S E+ LN LC RFFG+D+DSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR D+ T T+++Y P IN+V Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 1133 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 P+NRRLPH+LV H ++S +SKL G+TVLV+G +S+ GK V+ L P T++ Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 1193 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 A LDLGIPS + KYDI+FVNVRT Y++HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1194 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 1313 Query 781 TNIYTGSRLHEAG 793 NIY GS +EAG Sbjct 1314 NNIYQGSTQYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 534 to 1326 Score:1212 bits(3135), Expect:0.0, Method:Compositional matrix adjust., Identities:581/793(73%), Positives:670/793(84%), Gaps:0/793(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 594 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 + VK + + EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV++M+ +DV ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 773 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 774 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 833 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 T+V+HKSISRRCT++VT++VSTLFYDKRM+T NP KI IDTTG+TKP KDDLILTCFR Sbjct 834 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 893 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLY+ TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 480 VWKTLAGDPWIKTLTAKYPGDFTA++++WQ EHDAIM +L+KP DVFQNK NVCWAK Sbjct 954 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 1013 Query 481 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 540 AL PVL TA I LT +QW T+ FK D+A+S E+ LN C RFFG+DLDSGLFSAPTV L Sbjct 1014 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 1073 Query 541 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 600 + R+ HWDNSP NMYGLN+EV ++LSRRYP + +AV TGR D+ T+++Y P IN+V Sbjct 1074 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 1133 Query 601 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 660 P+NRRLPH+L+ H +D S F+SK+KG++VLV+G+ +SI GK V+ + P +T R Sbjct 1134 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 1193 Query 661 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 720 LDLGIPS + KYDI+FVNVRT YR HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1194 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 1253 Query 721 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 780 GYG ADRA+E+II AVAR F+F+RVC+PK + E TEVLFVF G D TH+ +L L Sbjct 1254 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 1313 Query 781 TNIYTGSRLHEAG 793 NIY GS +EAG Sbjct 1314 DNIYQGSTRYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1332 Score:983 bits(2542), Expect:0.0, Method:Compositional matrix adjust., Identities:472/800(59%), Positives:589/800(73%), Gaps:8/800(1%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPR +KVT A + IGSY +LSPQ VL+SEKL IHPLAEQV V+THSGR GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 V+ E EY++D+DKK C+KKE SGL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CT+V HKSISRRCT VT++VSTL Y +MRTTN ++ I+IDTTGS+KP D++LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLY+P SEHVNVLLTRTE++ Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+GDPWIK LT GDF+AT+EEWQ EHD IMR + E+P D FQNKA VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 480 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 539 K LV VL+TAGI +T ++WNT+ F+ED+A+S E+ LN++C R++G+DLDSGLFSA +V Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 540 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINL 599 L NNHWDN P MYG N EV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 600 VPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLS----ET 654 VP NRRLPHALVT + + K+ G +L+V E ++I K V W++ Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVSG 1194 Query 655 PDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 714 D T+ LDLG+P + +YD+VFVN+ T+YR HHYQQC DH+++L ML + L PG Sbjct 1195 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 1252 Query 715 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 774 G+ + YGYADR SE ++ A+AR+F RV +P TEV +F FD R + Sbjct 1253 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 1312 Query 775 KLSSTLTNIYTGSRLHEAGC 794 + + L+++Y + LH AGC Sbjct 1313 QANQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1332 Score:980 bits(2533), Expect:0.0, Method:Compositional matrix adjust., Identities:471/800(59%), Positives:587/800(73%), Gaps:8/800(1%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPR +KVT A + IGSY +LSPQ VL+SEKL IHPLAEQV V+THSGR GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 V+ E EY++D+DKK C+KKE SGL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CT+V HKSISRRCT VT++VSTL Y +MRTTN ++ I+IDTTGS+KP D++LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLY+P SEHVNVLLTRTE++ Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+GDPWIK LT GDF+AT+EEW EHD IMR + E+P D FQNKA VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 480 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 539 K LV VL+TAGI +T ++WNT+ F+ED+A+S E+ LN++C R++G+DLDSGLFSA +V Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 540 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINL 599 L NNHWDN P MYG N EV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 600 VPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLS----ET 654 VP NRRLPHALVT + + K+ G +L+V E + I K V W++ Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 1194 Query 655 PDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 714 D T+ LDLG+P + +YD+VFVN+ T+YR HHYQQC DH+++L ML + L PG Sbjct 1195 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 1252 Query 715 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 774 G+ + YGYADR SE ++ A+AR+F RV +P TEV +F FD R + Sbjct 1253 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 1312 Query 775 KLSSTLTNIYTGSRLHEAGC 794 + + L+++Y + LH AGC Sbjct 1313 QANQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1331 Score:967 bits(2499), Expect:0.0, Method:Compositional matrix adjust., Identities:464/799(58%), Positives:588/799(73%), Gaps:6/799(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPR +KVT + IG+Y +LSPQ VL+SEKLT IHPLAEQV ++THSGR GRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 V+ Y G+V+VP G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 V+ E EY++D+DK+ CVK+E SGL L G+L++PPFHEFAYE L+ RPA P+Q Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIKS VT +DLV S KKENC EI+ DVKK +GLDV ARTVDS+LLN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC+ VE LY+DEAFACH+GTL ALIA+++P K +LCGDPKQCGFFN+M LKV+FNH+I Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNHDI 833 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CTQV HKSISRRCT +T++VSTL Y +MRTTN + I+IDTTG+TKP K D++LTCF Sbjct 834 CTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCF 893 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 R WVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYAP+SEHVNVLLTRTE++ Sbjct 894 RXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRTENR 953 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+GDPWIK LT GDF+AT+EEWQ EHD IM + E+ D FQNKA VCWA Sbjct 954 LVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKVCWA 1013 Query 480 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVP 539 K LV VL+TAGI +T E+W+TV F+ED+A+S E+ LN++C +++G+DLDSGLFSA +V Sbjct 1014 KCLVQVLETAGIRMTAEEWDTVLAFREDRAYSPEVALNEICTKYYGVDLDSGLFSAQSVS 1073 Query 540 LSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINL 599 L NNHWDN P MYG N+EV R+ +RYP L + +G ++ ++ ++ N+ Sbjct 1074 LYYENNHWDNRPGGRMYGFNREVARKFEQRYPFLRGKMDSGLQVNVPERKVQPFNAECNI 1133 Query 600 VPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLSETPDST 658 + +NRRLPHALVT + + KL G +L+V E +++ K V W++ P + Sbjct 1134 LLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAP-PHVS 1192 Query 659 FRAR---LDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 R LDLG+P +YD+VFVN+ T+YR HHYQQC DH++KL ML + L PGG Sbjct 1193 GADRIYDLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPGG 1252 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 775 + + YGYADR SE ++ A+AR+F RV +P TEV +F FD R ++ Sbjct 1253 SLLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTNFDNGRRAVTLHQ 1312 Query 776 LSSTLTNIYTGSRLHEAGC 794 + L++++ + LH AGC Sbjct 1313 ANQRLSSMFACNGLHTAGC 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1336 Score:962 bits(2486), Expect:0.0, Method:Compositional matrix adjust., Identities:463/800(58%), Positives:588/800(73%), Gaps:7/800(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPR +KVT+ + +G+Y VLSPQ VL+S KL +HPLAEQV +ITH+GR GRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREFVNR L+HIA HG +LNTDEE Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 V+ + EY++D+DKK CVK+E SGL L GEL +PPFHEFAYE L+ RP+APY+ Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 +GV+GVPGSGKS IIKS VTK DLV S KKENC EI+ DVKK +GLD+ A+TVDS+LLN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC+ V+ LY+DEAFACH+GTL ALIA+++P+ K VLCGDPKQCGFFNMM LKV+FNH I Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNI 837 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CT+V HKSISRRCT+ VT++VSTL Y +MRTTNP + I IDTTG TKPK D++LTCF Sbjct 838 CTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCF 897 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQ+DY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYAP SEHVNVLLTRTED+ Sbjct 898 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDR 957 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTLAGDPWIK L+ G+FTAT+EEWQ EHD IM+ I P D FQNKANVCWA Sbjct 958 LVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAFQNKANVCWA 1017 Query 480 KALVPVLKTAGIDLTTEQWNT-VDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K+LVPVL TAGI LT E+W+T + FKED+A+S + LN++C +++G+DLDSGLFSAP V Sbjct 1018 KSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPKV 1077 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 L NNHWDN P MYG N +L R+ L TG+ + ++ N Sbjct 1078 SLYYENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLDN 1137 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLSETPDS 657 ++P+NRRLPHALV ++ S V+K++G VL+V E +++ + V WLS + Sbjct 1138 VIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPL-NV 1196 Query 658 TFRAR---LDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 714 T R L LG+P++ ++D+VFVN+ T++R HHYQQC DHA+KL ML A L PG Sbjct 1197 TGADRCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPG 1256 Query 715 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 774 G+ + YGYAD+ SE+++ +++R+F +RV +P TEV +F FD R + Sbjct 1257 GSLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPSTLH 1316 Query 775 KLSSTLTNIYTGSRLHEAGC 794 ++++ L+ +Y G +H AGC Sbjct 1317 QMNTKLSAVYAGEAMHTAGC 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1333 Score:944 bits(2439), Expect:0.0, Method:Compositional matrix adjust., Identities:453/799(57%), Positives:573/799(71%), Gaps:6/799(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPRG IKVT+ + +G Y VL+PQAVLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVE Y G+V+VP G AIP +DFQ+LSESAT+V+NEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V+ + E EY+YD+D+K+C K+E +GL L G+L PP+HEFAYE L+ RPA PY+ Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC PVE LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTG TKP+ DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+GNE+MTAAASQGLTRKGVYAVR KVNENPLYAPTSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 + WKTL+GDPWIK L GDF AT++EW+AEH +IM I D FQNKANVCWA Sbjct 956 LTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 480 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K LVP+L TAGI L+ QW+ V FKED+A+S E+ LN++C R +G+DLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 + +NHWDN P M+G N EV L ++YP + + T + ++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVV-GEKMSISGKTVDWLSE--TP 655 ++P NRRLPH+LV +H V+K+ G +L+V G + + K V W++ T Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPTKRVTWVAPLGTR 1195 Query 656 DSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 + + L+LG+P+ L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 775 + + YGYADR SE +I + R+F+ SR KP+ TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 776 LSSTLTNIYTGSRLHEAGC 794 +++ L +Y G AGC Sbjct 1316 MNNQLNAVYAGLATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1334 Score:941 bits(2433), Expect:0.0, Method:Compositional matrix adjust., Identities:458/799(57%), Positives:574/799(71%), Gaps:6/799(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPR +KVT + +GSY VLSPQ VL+S KL +HPLAE V +ITH GR GRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 V+ Y G+V++P G AIPV DFQALSESAT+VYNEREF+NR L+HIA HG ALNTDEE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 V+ + EY+YD+D+KQCVK+E GL + G+L++PPFHEFAYE L+ RPAAPY+ Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 +GV+GVPGSGKSGIIKS VT+ DLV S KKENC EI+ DVK+ + LD+ A+TVDSVLLN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNHEI 299 G K V+ LY+DEAFACHAGTL ALIA +RP KK VLCGDPKQCGFFN+M L+V+FNH I Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNHNI 836 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CT+V HKSISRRCT +T++VSTL Y+ RMRTTNP + + IDTTG TKP ++D++LTCF Sbjct 837 CTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCF 896 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQ+DY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYA +SEHVNVLLTRTE + Sbjct 897 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRTEGR 956 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+GDPWIKTL+ G+FTAT+E+WQ EHD IMR I ++ P DVFQNKA VCWA Sbjct 957 LVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKVCWA 1016 Query 480 KALVPVLKTAGIDLTTEQWNTVDY-FKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K LVPVL+TAGI L+ W+ + FKED+A+S E+ LN++C + +G+DLDSGLFSAP V Sbjct 1017 KCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSAPRV 1076 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 L NHWDNSP MYG + E +L +++P +G+ T + D N Sbjct 1077 SLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASGQVLVAERKT-QPIDVTCN 1135 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLS--ETP 655 L+P NRRLPH LVT++ V+K+ G VL+V E + + + V W++ Sbjct 1136 LIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKVTWIAPPTVT 1195 Query 656 DSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 + LDLG+P +YD+VFVN+ T YR HHYQQC DHA+KL ML A L PGG Sbjct 1196 GADLTYDLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLLKPGG 1255 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 775 + + Y YADR SE+++ A+AR+F R + TEV +F FD RT ++ Sbjct 1256 SLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDNGRRTVTLHQ 1315 Query 776 LSSTLTNIYTGSRLHEAGC 794 + L++IY G+ L AGC Sbjct 1316 TNGKLSSIYAGTVLQAAGC 1334 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1333 Score:940 bits(2429), Expect:0.0, Method:Compositional matrix adjust., Identities:451/799(56%), Positives:573/799(71%), Gaps:6/799(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPRG IKVT+ + +G Y VL+PQAVLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVE Y G+V+VP G AIP +DFQ+LSESAT+V+NEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V+ + E EY+YD+D+K+C K+E +GL L G+L PP+HEFAYE L+ RPA PY+ Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC PVE LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTG TKP+ DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+GNE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 ++WKTL+GDPWIK L G+F AT++EW+AEH +IM I D FQNKANVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 480 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K LVP+L TAGI L+ QW+ V FKED+A+S E+ LN++C R +G+DLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 + +NHWDN P M+G N EV L ++YP + + T + ++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVV-GEKMSISGKTVDWLSE--TP 655 ++P NRRLPH+LV +H V+K+ G +L+V G + + K V W++ T Sbjct 1136 IIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 656 DSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 + + L+LG+P+ L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 775 + + YGYADR SE +I + R+F+ SR KP+ TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 776 LSSTLTNIYTGSRLHEAGC 794 +++ L +Y G AGC Sbjct 1316 MNNQLNAVYAGLATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1333 Score:939 bits(2427), Expect:0.0, Method:Compositional matrix adjust., Identities:451/799(56%), Positives:573/799(71%), Gaps:6/799(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPRG IKVT+ + +G Y VL+PQAVLRS+KL IH LAEQV THSGR GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVE Y G+V+VP G AIP +DFQ+LSESAT+V+NEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V+ + E EY+YD+D+K+C K+E +GL L G+L PP+HEFAYE L+ RPA PY+ Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC PVE LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTG+TKP+ DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+GNE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 ++WKTL+GDPWIK L G+F AT++EW+AEH +IM I D FQNKANVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANVCWA 1015 Query 480 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K LVP+L TAGI L+ QW+ V FKED+A+S E+ LN++C R +G+DLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 + +NHWDN P M+G N EV L ++YP + + T + ++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVV-GEKMSISGKTVDWLSE--TP 655 ++P NRRLPH+LV +H V+K+ G +L+V G + + K V W++ T Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 656 DSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 + + L+LG+P+ L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 775 + + YGYADR SE +I + R+F+ SR KP+ TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 776 LSSTLTNIYTGSRLHEAGC 794 +++ L +Y G AGC Sbjct 1316 MNNQLNAVYAGLATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1333 Score:939 bits(2427), Expect:0.0, Method:Compositional matrix adjust., Identities:451/799(56%), Positives:573/799(71%), Gaps:6/799(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVE Y G+V+VP G AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V+ E EY+YD+D+++C KKE +GL L G+L +PP+HEFAYE L+ RPA PY++ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + +GL+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTGSTKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+GDPWIKTL G+F AT++EW+ EH +IM I D FQNKANVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWA 1015 Query 480 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K+LVP+L+TAGI L QW+ + FKEDKA+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 + +NHWDN P M+G N E L R+YP + + T + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTN 1135 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVV-GEKMSISGKTVDWLSE--TP 655 ++P NRRLPH+LV +H V+K+ G VL+V G +++ K V W++ Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVR 1195 Query 656 DSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 + + L+LG+P+ L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 775 + + YGYADR SE +I + R+F+ SR KP TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 776 LSSTLTNIYTGSRLHEAGC 794 +++ L + G + AGC Sbjct 1316 MNNQLNAAFVG-QATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1333 Score:936 bits(2419), Expect:0.0, Method:Compositional matrix adjust., Identities:451/801(56%), Positives:572/801(71%), Gaps:10/801(1%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G +ETPRG IKVT+ + +G Y VLSPQ VLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AVE Y G+++VP G AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 +V+ E EY+YD+D+++C KKE +GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTGSTKP DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQIDY+G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+GDPWIKTL G+F AT++EW+ EH +IM I D FQNKANVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 1015 Query 480 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K+LVP+L+TAGI L QW+ + FKED+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1076 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 1135 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVV-GEKMSISGKTVDWLS----E 653 ++P NRRLPH+LV +H V+K+ G VL+V G + + K V W++ Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 1195 Query 654 TPDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNP 713 D T+ L+LG+P+ L +YD+V +N+ T +R HHYQQC DHA+KL ML + L P Sbjct 1196 GADYTY--NLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 1253 Query 714 GGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNP 773 GG+ + YGYADR SE ++ + R+F+ SR KP TE+ F+F FD R Sbjct 1254 GGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTT 1313 Query 774 YKLSSTLTNIYTGSRLHEAGC 794 + +++ L + G + AGC Sbjct 1314 HVMNNQLNAAFVG-QATRAGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1307 Score:922 bits(2382), Expect:0.0, Method:Compositional matrix adjust., Identities:456/774(59%), Positives:556/774(71%), Gaps:5/774(0%) Query 1 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 60 G VETPR IKV++ G+ IGSY +LSPQAVLRSEKL CIH LAEQV ++THSGR GRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 61 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 120 AV+ Y G+V+VP G AI +Q FQALSESAT+VYNEREFVNR L HIA +G ALNTDEE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 121 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 180 V E +Y++D+D+K C+KKE SG L GELV+PPFHEFAYE LRTRP+APY+V Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 240 T+GVYGVPGSGKS IIK+ VT DLV+S KKENC EI+ DV K + L + A+TVDSVLLN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 241 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 299 G KH LYIDEAF+CHAGTL A IAI+RPK K VLCGDPKQCGFFNMM LKV++NH+I Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNHDI 833 Query 300 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCF 359 C++VFHKSISRRCT+ +T++VS L Y RMRTTNPR I IDTTG+TKP K DLILTCF Sbjct 834 CSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLILTCF 893 Query 360 RGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 419 RGWVKQLQ DY+GNE+MTAAASQGLTR VYAVR KVNENPLYA TSEHVNVLLTRTE+K Sbjct 894 RGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENK 953 Query 420 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 479 +VWKTL+ DPWIKTLT G +TAT+ EW+AEH IM+ I P + F NK NVCWA Sbjct 954 LVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNVCWA 1013 Query 480 KALVPVLKTAGIDLTTEQWNT-VDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 K L PVL+TAGI L+ E W+ + F +D A+S E+ LN +C + +G DLD+GLFS P+V Sbjct 1014 KTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSRPSV 1073 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRIN 598 P++ +HWDN MYG +++ QL+RR+P L +G + ++ N Sbjct 1074 PMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSGMQIVVTEMRIQRPRSDAN 1133 Query 599 LVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGE-KMSISGKTVDWLSE--TP 655 ++P+NRRLPH+LV H + F + +G T+L+V E M++ K + WL+ T Sbjct 1134 IIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKKITWLAPIGTQ 1193 Query 656 DSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 715 + A L+LGIP L +D V VN+ T +R HHYQQCEDHA+KL ML A H+ PGG Sbjct 1194 GAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKPGG 1253 Query 716 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTR 769 + YGYADR SE ++ A+AR+FK RV +P TEV F FD R Sbjct 1254 SLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFDNGKR 1307 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 543 to 1342 Score:897 bits(2317), Expect:0.0, Method:Compositional matrix adjust., Identities:451/804(56%), Positives:563/804(70%), Gaps:22/804(2%) Query 3 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 62 VETPRG +++ A + IG Y V+SP +VL++ KL HPLA+QV +ITHSGR GRYAV Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRYAV 602 Query 63 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE Y+V Sbjct 603 EPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 123 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 182 K E EY++D+DKK+CVKKE SGL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 183 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 243 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 298 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDPKQCGFFNMM LKVHFNH + Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPERD 842 Query 299 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTC 358 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP IEID TG+TKPK D+ILTC Sbjct 843 ICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 359 FRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 418 FRGWVKQLQIDY G+E+MTAAASQGLTRKGVYAVR KVNEN LYA TSEHVNVLLTRTED Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRTED 962 Query 419 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 478 ++VWKTL GDPWIK LT G+F AT+E+W+AEH I+ I T+ F K NVCW Sbjct 963 RLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNVCW 1022 Query 479 AKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPT 537 AKAL P+L TAGI LT QW+ + F +DK HSA L+ +C++FFG+DL SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 538 VPLSIRN-------NHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTL 590 +PL+ HWDNSP YG + V +LSRR+P A G D+ TG Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFPVFQLA-GKGTQLDLQTGRT 1141 Query 591 RNYDPRINLVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVG-EKMSISGKTVD 649 R + NLVPVNR LPHALV +H + P F+++ K +VLVV EK+ K ++ Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPHKRIE 1201 Query 650 WLSET----PDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTK 705 W++ D + L G P + +YD+VF+N+ T+YR HH+QQCEDHA L L++ Sbjct 1202 WIAPIGIAGADKNY--NLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 1258 Query 706 KACLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFD 765 A LNPGGT V YGYADR SE ++ A+AR+F +P+ TE+ +F D Sbjct 1259 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQLD 1318 Query 766 R-KTRTHNPYKLSSTLTNIYTGSR 788 +TR P+ L+ ++++Y G+R Sbjct 1319 NSRTRQFTPHHLNCVISSVYEGTR 1342 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 543 to 1342 Score:889 bits(2297), Expect:0.0, Method:Compositional matrix adjust., Identities:447/804(56%), Positives:560/804(69%), Gaps:22/804(2%) Query 3 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 62 VETPRG +++ A + IG Y V+SP +VL++ KL HPLA+QV +ITHSGR GRYAV Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 602 Query 63 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE Y+V Sbjct 603 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 123 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 182 K E EY++D+DKK+CVKKE SGL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 183 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 243 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 298 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 842 Query 299 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTC 358 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP IEID TG+TKPK D+ILTC Sbjct 843 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 359 FRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 418 FRGWVKQLQIDY G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 962 Query 419 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 478 ++VWKTL GDPWIK T G+F AT+E+W+AEH I+ I + F K NVCW Sbjct 963 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 1022 Query 479 AKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPT 537 AKAL P+L TAGI LT QW+ + F +DK HSA L+ +C++FFG+DL SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 538 VPLSIRN-------NHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTL 590 +PL+ HWDNSP YG + + +LSRR+P A G D+ TG Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGRT 1141 Query 591 RNYDPRINLVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVG-EKMSISGKTVD 649 R + NLVPVNR LPHALV ++ + P F+++ K +VLVV EK+ K ++ Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 1201 Query 650 WLSET----PDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTK 705 W++ D + L G P + +YD+VF+N+ T+YR HH+QQCEDHA L L++ Sbjct 1202 WIAPIGIAGADKNY--NLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 1258 Query 706 KACLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFD 765 A LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1259 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 1318 Query 766 R-KTRTHNPYKLSSTLTNIYTGSR 788 +TR P+ L+ ++++Y G+R Sbjct 1319 NSRTRQFTPHHLNCVISSVYEGTR 1342 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 542 to 1336 Score:820 bits(2119), Expect:0.0, Method:Compositional matrix adjust., Identities:422/798(53%), Positives:538/798(67%), Gaps:19/798(2%) Query 3 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 62 VETPRG IK+ G+ +IGSY V+SP AVLR+++L IH LAEQV +ITH GR GRY+V Sbjct 542 VETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRYSV 601 Query 63 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 122 EPY KV++P G + Q F ALSESAT+VYNEREF+NR LHHIAT G A NT+EE Y+V Sbjct 602 EPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQYKV 661 Query 123 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 182 K + + EY+YD+D ++CVK+E GL L GEL +PP+HE AYE LRTRPAAPY + T+ Sbjct 662 CKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIETL 721 Query 183 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 242 GV G PGSGKS IIKS VT KDLV S KKENC EI DV+KM+G+ + RTVDSVLLNG Sbjct 722 GVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLNGW 781 Query 243 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 298 K V+ LY+DEAFACHAGTL ALIAI++P +K VLCGDPKQ FFN+M LKV+FN+ + Sbjct 782 KKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPERD 841 Query 299 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTC 358 +CT +K ISRRCT+ VT++VSTL YD +MRTTNP IEID GSTKPKK D++LTC Sbjct 842 LCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVLTC 901 Query 359 FRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 418 FRGWVKQ QIDY G AASQGLTR+GVYAVR KVNENPLYA SEHVNVLLTRTED Sbjct 902 FRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRTED 961 Query 419 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 478 +IVWKTL GDPWIK LT G+FTAT+EEWQAEH+ IM+ I +D F +K N CW Sbjct 962 RIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNTCW 1021 Query 479 AKALVPVLKTAGIDLTTEQW-NTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPT 537 AKA++P+L+TAGI+LT EQW + F+ D+ +S L+ +C + FG+DL SG+FS P Sbjct 1022 AKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSRPE 1081 Query 538 VPLSIR-------NNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTL 590 +PL+ HWDNSP +G NK V+ ++YP RA + + G + Sbjct 1082 IPLTFHPADVGRVRAHWDNSPGGQKFGYNKAVI-PTCKKYPVYLRAGKGDQILPI-YGRV 1139 Query 591 RNYDPRINLVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVG-EKMSISGKTVD 649 R NLVP+NR LPH+L + F+++L G ++L+V E K + Sbjct 1140 SVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCVSKRIT 1199 Query 650 WLSE--TPDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKA 707 W++ + L G P L +YD+V VN+ YR+HHYQQCE+HA + L + A Sbjct 1200 WVAPLGVRGADHNHDLHFGFPP-LSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSA 1258 Query 708 CLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDR- 766 L PGGT YG+AD SE ++ ++AR+F + +P ++ TE+ FVF D Sbjct 1259 LNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFRQLDND 1318 Query 767 KTRTHNPYKLSSTLTNIY 784 + R + L+ ++NI+ Sbjct 1319 RERQFTQHHLNLAVSNIF 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 567 to 1390 Score:651 bits(1679), Expect:0.0, Method:Compositional matrix adjust., Identities:362/827(44%), Positives:489/827(59%), Gaps:48/827(5%) Query 3 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCI-HPLAEQVIVITHSGRKGRYA 61 ++ RG +KV + G++ +G Y VLSP VLR+ KL + PLAE+V+ H GR GRYA Sbjct 567 IDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRYA 626 Query 62 VEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYR 121 +E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE YY+ Sbjct 627 IEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYYK 686 Query 122 VVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPT 181 +V ++ EY+Y++ KQCVKKE +G L G++ +PP+H+FAYE+LR RPA + V T Sbjct 687 LVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVHT 746 Query 182 IGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNG 241 IG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+ Sbjct 747 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYGA 806 Query 242 CKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 + V TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+NHEI Sbjct 807 YRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 866 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 +V K+ISRRCT ++T++VS L Y+ RM+TTNP + IDTTGSTKP K+ L+LTCFR Sbjct 867 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 926 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVK L+ Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT D++ Sbjct 927 GWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRTNDEL 986 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVF-QNKANVCWA 479 VWKTL DP I L+ GD++ATME+W+ EH+ I+ + E P F K N CWA Sbjct 987 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCWA 1046 Query 480 KALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 VL AG+ +T E +N + F+EDK HSA L+ + +GLD SG+ S Sbjct 1047 VTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILSGKGS 1106 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRA---YDMNTGTLRNYDP 595 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L DP Sbjct 1107 FMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPLDP 1166 Query 596 RINLVPVNRRLPHALVTQHADYPPS-----------------------DFSAFVSKLKGR 632 VP+NR +PH LV A P F+ ++ Sbjct 1167 ARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKRVSYN 1226 Query 633 TVLVVG-------EKMSISGKTVDWLSETPDSTFRARL----DLGIP-SELPKYDIVFVN 680 +VL +G + GKTV +SE D+ R + D+ P + L +D+VF + Sbjct 1227 SVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADINGPLNNLGIFDLVFCD 1286 Query 681 VRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAVARQF 740 RYHHY QCEDHA+ + K GG + YG ADR +E + AR F Sbjct 1287 AAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTARYF 1346 Query 741 KFSRVCKPKVSK-EETEVLFVFIGFDRKTRTH--NPYKLSSTLTNIY 784 + V KP S+ EV F F G + R H + L LT+IY Sbjct 1347 RSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIY 1390 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 566 to 1393 Score:648 bits(1671), Expect:0.0, Method:Compositional matrix adjust., Identities:366/831(44%), Positives:494/831(59%), Gaps:48/831(5%) Query 3 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCI-HPLAEQVIVITHSGRKGRYA 61 ++ RG +KV + G++ +G Y VLSP VLR+ KL + PLAE+V+ H GR GRYA Sbjct 566 IDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRYA 625 Query 62 VEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYR 121 +E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE YY+ Sbjct 626 IEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYYK 685 Query 122 VVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPT 181 +V ++ + EY+Y++ KQCVKKE +G L G++ +PP+H+FA+E+LR RPA + V T Sbjct 686 LVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVHT 745 Query 182 IGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNG 241 IG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+L Sbjct 746 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYGA 805 Query 242 CKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEIC 300 + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+NHEI Sbjct 806 YRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 865 Query 301 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 360 +V K+ISRRCT ++T++VS L Y+ RM+TTNP + IDTTGSTKP K+ L+LTCFR Sbjct 866 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 925 Query 361 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 420 GWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT D++ Sbjct 926 GWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRTNDEL 985 Query 421 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVF-QNKANVCWA 479 VWKTL DP I L+ GD++ATME+W+ EH+ I+ + E P F K N CWA Sbjct 986 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCWA 1045 Query 480 KALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTV 538 VL AG+ +T E +N + F+EDK HSA L+ + +GLD SG+ S Sbjct 1046 VTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILSGKGS 1105 Query 539 PLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRA---YDMNTGTLRNYDP 595 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L DP Sbjct 1106 FMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPMDP 1165 Query 596 RINLVPVNRRLPHALVTQHADYPPS-----------------------DFSAFVSKLKGR 632 VP+NR +PH LV A P F+ ++ Sbjct 1166 GRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKRVSYN 1225 Query 633 TVLVVGEKMS-------ISGKTVDWLSETPDSTFRARL----DLGIP-SELPKYDIVFVN 680 +VL +G GKTV +SE DS R + D+ P + L +D+VF + Sbjct 1226 SVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDLVFCD 1285 Query 681 VRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAVARQF 740 RYHHY QCEDHA + + K GG + YG ADR +E + AR F Sbjct 1286 AAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYF 1345 Query 741 KFSRVCKPKVSK-EETEVLFVFIGFDRKTRTH--NPYKLSSTLTNIYTGSR 788 K V KP S+ EV F F G + R H + L LT+IY +R Sbjct 1346 KSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIYARTR 1393 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 861 to 1117 Score:81.6 bits(200), Expect:2e-14, Method:Compositional matrix adjust., Identities:81/266(30%), Positives:120/266(45%), Gaps:30/266(11%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDV----KKMKGLDVNARTVDSVL 238 V GVPG GK+ I + V K DLV++ +E A I R K + N RT DS + Sbjct 861 VDGVPGCGKTAEIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATNDNVRTFDSFV 920 Query 239 LNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHE 298 +N + +Y+DE H G L + I KKA + GD KQ F N + ++F++ Sbjct 921 MNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRV---MNFDYP 977 Query 299 ------ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNP---RDSKIEIDTTGSTKP 349 I V + ++ RC + VTS ++T+ Y + TT+P I++ G +P Sbjct 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTI-YKAAVATTSPVVHSVKAIKVSGAGILRP 1036 Query 350 KKDDLILTCFRGWV-------KQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLY 402 + LT +G + KQ I N++ T QG T + VR L Sbjct 1037 E-----LTKIKGKIITFTQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLI 1091 Query 403 APTSEHVNVLLTRTEDKIVWKTLAGD 428 A S HV V LTR +V+ T+ D Sbjct 1092 ARDSPHVLVALTRHTKAMVYYTVVFD 1117 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 824 to 1089 Score:80.9 bits(198), Expect:3e-14, Method:Compositional matrix adjust., Identities:76/269(28%), Positives:124/269(46%), Gaps:23/269(8%) Query 184 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---MKGLDVNARTVDSVLL 239 V GVPG GK+ I+++ +DL++ KE C II+ K ++ N RTVDS L+ Sbjct 824 VDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATRDNVRTVDSFLM 883 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEI 299 + L+IDE H G + L+A+ ++A++ GD +Q F N + + H Sbjct 884 HLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVANFPYPKHFR 943 Query 300 CTQVFHKSISR---RCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTT---GSTKPKKDD 353 T ++H+ + R RC VT +++ YD ++ TN ++ + G PK Sbjct 944 YTCLYHREVRRLSLRCPADVTHFMNSK-YDGKVLCTNDVIRSVDAEVVRGKGVFNPKSKP 1002 Query 354 L---ILTCFRGWVKQLQIDYKG-------NEIMTAAASQGLTRKGVYAVRYKVNENPLYA 403 L I+T + + ++ +G EI T QG T + V VR L + Sbjct 1003 LKGKIITFTQS--DKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLELIS 1060 Query 404 PTSEHVNVLLTRTEDKIVWKTLAGDPWIK 432 +S HV V LTR + ++ DP +K Sbjct 1061 KSSPHVLVALTRHTKSFKYYSVVLDPLVK 1089 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 809 to 1089 Score:77.4 bits(189), Expect:3e-13, Method:Compositional matrix adjust., Identities:78/284(27%), Positives:124/284(43%), Gaps:23/284(8%) Query 169 LRTRPAAPYQVPTIGVYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---M 224 L+ P V GVPG GK+ I+++ +DL++ KE C II+ K + Sbjct 809 LKDGEPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHV 868 Query 225 KGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCG 284 + N RTVDS L++ L+IDE H G + LIA+ ++A++ GD +Q Sbjct 869 RATKDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIP 928 Query 285 FFNMMCLKVHFNHEICTQVFHKSISR---RCTKSVTSVVSTLFYDKRMRTTNPRDSKIEI 341 F N + + H H+ + R RC VT +++ YD ++ TN ++ Sbjct 929 FINRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSK-YDGKVLCTNDVIRSVDA 987 Query 342 DTT---GSTKPKKDDL---ILTCFRGWVKQLQIDYKG-------NEIMTAAASQGLTRKG 388 + G PK L I+T + + ++ +G EI T QG T + Sbjct 988 EVVRGKGVFNPKSKPLKGKIITFTQS--DKAELKERGYEEVSTFGEINTVHEIQGETFED 1045 Query 389 VYAVRYKVNENPLYAPTSEHVNVLLTRTEDKIVWKTLAGDPWIK 432 V VR L + +S HV V LTR + ++ DP +K Sbjct 1046 VSVVRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVK 1089 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 831 to 1095 Score:70.9 bits(172), Expect:4e-11, Method:Compositional matrix adjust., Identities:70/267(26%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V ++ ++ AE+IR G+ V N RTVDS L+ Sbjct 831 VDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLM 890 Query 240 N---GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N G + + L+IDE H G + L+ + A + GD +Q + N + Sbjct 891 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLSDIAYVYGDTQQIPYINRVTGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + +G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASINPVS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP K ++ F K+ + ++ T QG T V VR + A S Sbjct 1011 KPLKGKIL--TFTQSDKEALLSRGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIARDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVSLSRHTKSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 830 to 1092 Score:69.7 bits(169), Expect:8e-11, Method:Compositional matrix adjust., Identities:75/267(28%), Positives:117/267(43%), Gaps:22/267(8%) Query 184 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVL 238 V GVPG GK+ I++ +DLV+ KE A +IR G V N +TVDS L Sbjct 830 VDGVPGCGKTKEILRRVNFSEDLVLVPGKE-AAAMIRKRANQSGNIVANNDNVKTVDSFL 888 Query 239 LNGCKHPV---ETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LK 292 +N K PV + L++DE H G + L+ + +A + GD +Q + N + Sbjct 889 MNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLSLCNEAFVFGDTQQIPYINRVQNFPFP 948 Query 293 VHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------ 346 HF+ I + + + RC VT ++ YD + TT+ + ++ G Sbjct 949 QHFSKLIVDETEKRRTTLRCPVDVTHFLNQC-YDGAVTTTSKTQRSVGLEVVGGAAVMNP 1007 Query 347 -TKPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPT 405 TKP K ++ + L Y+ ++ T QG T + V VR + + Sbjct 1008 VTKPLKGKIVTFTQSDKLTMLSRGYQ--DVNTVHEIQGETYEEVSLVRLTPTPIHIISRE 1065 Query 406 SEHVNVLLTRTEDKIVWKTLAGDPWIK 432 S HV V LTR + T+ DP +K Sbjct 1066 SPHVLVGLTRHTRCFKYYTVVLDPLVK 1092 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 831 to 1095 Score:69.3 bits(168), Expect:1e-10, Method:Compositional matrix adjust., Identities:70/267(26%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V ++ ++ AE+IR G+ V N RTVDS L+ Sbjct 831 VDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLM 890 Query 240 N---GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N G + + L+IDE H G + L+ + A + GD +Q + N + Sbjct 891 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + +G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASINPVS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP K ++ F K+ + ++ T QG T V VR + A S Sbjct 1011 KPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIARDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVSLSRHTKSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 831 to 1095 Score:69.3 bits(168), Expect:1e-10, Method:Compositional matrix adjust., Identities:70/267(26%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V ++ ++ AE+IR G+ V N RTVDS L+ Sbjct 831 VDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLM 890 Query 240 N---GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N G + + L+IDE H G + L+ + A + GD +Q + N + Sbjct 891 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + +G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASINPVS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP K ++ F K+ + ++ T QG T V VR + A S Sbjct 1011 KPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIARDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVSLSRHTKSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 831 to 1095 Score:69.3 bits(168), Expect:1e-10, Method:Compositional matrix adjust., Identities:70/267(26%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V ++ ++ AE+IR G+ V N RTVDS L+ Sbjct 831 VDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLM 890 Query 240 N---GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N G + + L+IDE H G + L+ + A + GD +Q + N + Sbjct 891 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + +G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASINPVS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP K ++ F K+ + ++ T QG T V VR + A S Sbjct 1011 KPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVRLTPTPVSIIARDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVSLSRHTKSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 847 to 1109 Score:66.2 bits(160), Expect:1e-09, Method:Compositional matrix adjust., Identities:68/265(26%), Positives:113/265(42%), Gaps:16/265(6%) Query 184 VYGVPGSGKSGIIKSAV-TKKDLVVSAKKENCAEIIR---DVKKMKGLDVNARTVDSVLL 239 V GVPG GK+ I S DL++ +E C I R D N RT DS ++ Sbjct 847 VDGVPGCGKTQEILSRFDANSDLILVQGREACEMIRRRANDNVPGSATKENVRTFDSFVM 906 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFN-MMCLKV--HFN 296 N +TL++DE H G + I I + GD KQ F N +M + + Sbjct 907 NRKPGKFKTLWVDEGLMVHPGLINFCINISCVSSVYIFGDRKQIPFINRVMNFSIPDNLA 966 Query 297 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDL-- 354 ++ + ++RC VT ++++ Y+KR+ + + +E S K K +D Sbjct 967 KLYYDEIVSRDTTKRCPLDVTHFLNSV-YEKRVMSYSNVQRSLECKMI-SGKAKINDYRS 1024 Query 355 -----ILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHV 409 L F K+ + ++ T +QG T + V +R + + S HV Sbjct 1025 ILAEGKLLTFTQEDKEYLLKAGFKDVNTVHEAQGETYRDVNLIRVTATPLTIVSAGSPHV 1084 Query 410 NVLLTRTEDKIVWKTLAGDPWIKTL 434 V L+R ++ V+ T+ D + T+ Sbjct 1085 TVALSRHTNRFVYYTVVPDVVMTTV 1109 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 823 to 1117 Score:64.7 bits(156), Expect:3e-09, Method:Compositional matrix adjust., Identities:76/298(26%), Positives:129/298(43%), Gaps:24/298(8%) Query 182 IGVYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---MKGLDVNARTVDSV 237 I V GVPG GK+ II+ +DL++ KE IIR + ++ N RTVDS Sbjct 823 ILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRADKDNVRTVDSF 882 Query 238 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKVH 294 L++ + + L+IDE H G + L+ + + A + GD KQ F + H Sbjct 883 LMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVANFPYPAH 942 Query 295 FNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTT---GSTKPKK 351 F + + + ++ RC VT ++ YD + T+ + ++ + G+ P Sbjct 943 FAKLVADEKEVRRVTLRCPADVTYFLNKK-YDGAVMCTSAVERSVKAEVVRGKGALNPIT 1001 Query 352 DDL---ILTCFRGWVKQLQIDYKG-NEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 L ILT + + ++ KG ++ T QG T + VR + + S Sbjct 1002 LPLEGKILTFTQA--DKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTSTPLEIISSASP 1059 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTLT-AKYPGDFTATME------EWQAEHDAIMR 458 HV V LTR + T+ DP + ++ + +F M ++Q + DA+ R Sbjct 1060 HVLVALTRHTTCCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGVQYQLQIDAVFR 1117 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 852 to 1113 Score:63.9 bits(154), Expect:5e-09, Method:Compositional matrix adjust., Identities:81/282(29%), Positives:119/282(42%), Gaps:57/282(20%) Query 180 PTIG-VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVN-ARTVDSV 237 PTI V GV G GK+ I L++S K N EI R K+ +D RTVDS Sbjct 852 PTIKLVDGVTGCGKTTEIVRRYRPGILILSVCKANVDEIRR---KLAAVDSKFIRTVDSY 908 Query 238 LLN-GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC------ 290 LL+ + L+IDE H G L I I +K L GD +Q F N + Sbjct 909 LLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNRLADFPLKY 968 Query 291 -----LKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTG 345 + ++F+ EI +S + RC + +T + ++ K ++T + +S I I Sbjct 969 NSVEDVGLNFDREI------RSTTYRCPQDITLSLQKMYKTKPIKTVSTVESSITI---- 1018 Query 346 STKPKKDDL---ILTCFRG------------------WVKQLQIDYKGNEIMTAAASQGL 384 KP K + + F G W K+ +E+ T A+QGL Sbjct 1019 --KPIKSEFEIPLPNAFDGPVLYICMTKHDESLLKLRWAKE----NISSEVRTVHAAQGL 1072 Query 385 TRKGVYAVRYKVNENPLYAPTS--EHVNVLLTRTEDKIVWKT 424 + K V R +N LY H+ V ++R DKIV+ T Sbjct 1073 SYKNVVYFRLTRTDNDLYTKRKLPYHL-VAISRHTDKIVYCT 1113 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 831 to 1095 Score:62.8 bits(151), Expect:1e-08, Method:Compositional matrix adjust., Identities:65/267(24%), Positives:115/267(43%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGL----DVNARTVDSVLL 239 V GVPG GK+ I S V ++ ++ + AE+I+ G+ N RTVDS ++ Sbjct 831 VDGVPGCGKTKEILSKVNFEEDLILVPGKQAAEMIKRRANASGIIQATRDNVRTVDSFIM 890 Query 240 N---GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N G + + L+IDE H G + L+++ + A + GD +Q + N + Sbjct 891 NYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVYGDTQQIPYINRVSGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC +T ++ + M T++ + S + +G+ + Sbjct 951 HFAKIEVDEVETRRTTLRCPADITHYLNRRYEGYVMCTSSVKKSVSQEMVSGAAMINPVS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP ++ F K+ + ++ T QG T V VR + A S Sbjct 1011 KPLNGKVL--TFTQSDKEALLSRGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVALSRHTQTLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 833 to 1096 Score:62.4 bits(150), Expect:1e-08, Method:Compositional matrix adjust., Identities:70/266(26%), Positives:112/266(42%), Gaps:17/266(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + +V + AE+IR GL V N RTVDS L+ Sbjct 833 VDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRANSSGLIVATKENVRTVDSFLM 892 Query 240 NGCKHPVE--TLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKVH 294 N + P + L++DE H G + L+ + +A + GD +Q + N + H Sbjct 893 NYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKH 952 Query 295 FNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------TK 348 + V + + RC +T ++ + + M T++ S G+ +K Sbjct 953 LSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCTSSVTRSVSHEVIQGAAVMNPVSK 1012 Query 349 PKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEH 408 P K +I F K L + ++ T QG T + V VR + + S H Sbjct 1013 PLKGKVI--TFTQSDKSLLLSRGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSPH 1070 Query 409 VNVLLTRTEDKIVWKTLAGDPWIKTL 434 + V L+R I + T+ D + L Sbjct 1071 LLVSLSRHTRSIKYYTVVLDAVVSVL 1096 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 833 to 1096 Score:62.4 bits(150), Expect:1e-08, Method:Compositional matrix adjust., Identities:70/266(26%), Positives:112/266(42%), Gaps:17/266(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + +V + AE+IR GL V N RTVDS L+ Sbjct 833 VDGVPGCGKTKEILSRVNFDEDLVLVPGKQAAEMIRRRANSSGLIVATKENVRTVDSFLM 892 Query 240 NGCKHPVE--TLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKVH 294 N + P + L++DE H G + L+ + +A + GD +Q + N + H Sbjct 893 NYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKH 952 Query 295 FNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------TK 348 + V + + RC +T ++ + + M T++ S G+ +K Sbjct 953 LSQLEVDAVETRRTTLRCPADITFFLNQKYEGQVMCTSSVTRSVSHEVIQGAAVMNPVSK 1012 Query 349 PKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEH 408 P K +I F K L + ++ T QG T + V VR + + S H Sbjct 1013 PLKGKVI--TFTQSDKSLLLSRGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSPH 1070 Query 409 VNVLLTRTEDKIVWKTLAGDPWIKTL 434 + V L+R I + T+ D + L Sbjct 1071 LLVSLSRHTRSIKYYTVVLDAVVSVL 1096 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 815 to 1090 Score:61.6 bits(148), Expect:2e-08, Method:Compositional matrix adjust., Identities:72/281(26%), Positives:118/281(41%), Gaps:23/281(8%) Query 172 RPAAPYQVPT---IGVYGVPGSGK-SGIIKSAVTKKDLVVSAKKENCAEIIRDVKK---M 224 R P++ PT + V GVPG GK G + +DL++ K+ A I R + Sbjct 815 RDGEPHE-PTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLI 873 Query 225 KGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCG 284 + N RTVDS+L++ + L+IDE H G + L+ I A + GD +Q Sbjct 874 RATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIP 933 Query 285 FFNMMC---LKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEI 341 F N + HF +V + + RC V + + Y+ + TT+ + Sbjct 934 FINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSK-YEGAVTTTSTVQRSVSS 992 Query 342 DTTGS-------TKPKKDDLILTCFRGWVKQLQIDYKG-NEIMTAAASQGLTRKGVYAVR 393 + G +KP K ++ + +++ KG + T QG T + V VR Sbjct 993 EMIGGKGVLNSVSKPLKGKIVTFT---QADKFELEEKGYKNVNTVHEIQGETFEDVSLVR 1049 Query 394 YKVNENPLYAPTSEHVNVLLTRTEDKIVWKTLAGDPWIKTL 434 L + +S HV V LTR + T+ DP ++ + Sbjct 1050 LTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 831 to 1095 Score:60.1 bits(144), Expect:7e-08, Method:Compositional matrix adjust., Identities:69/267(26%), Positives:115/267(43%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + ++ + AE+IR G+ V N RTVDS ++ Sbjct 831 VDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANSSGIIVATKDNVRTVDSFMM 890 Query 240 NGCKH---PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N K + L+IDE H G + L+A+ A + GD +Q + N + Sbjct 891 NFGKTTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCDVAYVYGDTQQIPYINRVSGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF+ +V + + RC VT ++ + + T++ + S + +G+ + Sbjct 951 HFSKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVVSTSSVKKSVSQEMVSGAAVINPIS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP ++ F K+ + +E+ T QG T V VR + A S Sbjct 1011 KPLHGKIL--TFTQSDKEALLSRGYSEVHTVHEVQGETYSDVSLVRLTPTPISIIAGDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVALSRHTCSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1012 to 1276 Score:59.7 bits(143), Expect:1e-07, Method:Compositional matrix adjust., Identities:71/269(26%), Positives:109/269(40%), Gaps:28/269(10%) Query 184 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVN----ARTVDSVL 238 V GVPG GKS ++K A VV+ +E ++ K + RTVDS L Sbjct 1012 VDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRERFKSERNATATQLKRVRTVDSYL 1071 Query 239 LNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMM-CLKVHFNH 297 LN + L+ DEA HAG + + + + GD +Q F N + + + ++ Sbjct 1072 LNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSVICQGDSQQIPFINRVESITLRYSK 1131 Query 298 EICTQVFHKSISRRCTKSVTSVVSTL-FYD-----------KRMRTTNPRDSKIEIDTTG 345 V K ++ R V S ++ FY + ++T PRD I + Sbjct 1132 LEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVTSANPLVRSLKTVGPRDGMTSIYSI- 1190 Query 346 STKPKKDDLILTCFRGWVKQLQIDY--KGN-EIMTAAASQGLTRKGVYAVRYKVNENPLY 402 PK F K+ Y +GN + T SQG T V R K +N +Y Sbjct 1191 ---PKIPGTQYLTFLQSEKEEMRQYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEIY 1247 Query 403 ---APTSEHVNVLLTRTEDKIVWKTLAGD 428 +S ++ V +TR +V+ T A D Sbjct 1248 PGGRNSSPYMVVGVTRHRRSLVYYTKAED 1276 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 821 to 1083 Score:59.7 bits(143), Expect:1e-07, Method:Compositional matrix adjust., Identities:69/265(26%), Positives:111/265(41%), Gaps:15/265(5%) Query 184 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---MKGLDVNARTVDSVLL 239 V GVPG GK+ I++ +DLV+ KE IIR + + N RTVDS L+ Sbjct 821 VDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDNVRTVDSFLM 880 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKVHFN 296 + K + L+IDE H G + L+ + A + D +Q F + HF Sbjct 881 HPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYVDTQQIPFICRVANFPYPAHFA 940 Query 297 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTT---GSTKPKKDD 353 + + + ++ RC VT ++ YD + T+ + + + G+ P Sbjct 941 KLVVDEKEDRRVTLRCPADVTYFLNQK-YDGSVLCTSSVERSVSAEVVRGKGALNPITLP 999 Query 354 L---ILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVN 410 L ILT F K +D ++ T QG T + VR + + S HV Sbjct 1000 LEGKILT-FTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASPHVL 1058 Query 411 VLLTRTEDKIVWKTLAGDPWIKTLT 435 V LTR + + T+ DP + ++ Sbjct 1059 VALTRHTTRCKYYTVVLDPMVNVIS 1083 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 831 to 1095 Score:58.9 bits(141), Expect:1e-07, Method:Compositional matrix adjust., Identities:68/267(25%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + ++ + AE+IR G+ V N +TVDS ++ Sbjct 831 VDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANSSGIIVATKDNVKTVDSFMM 890 Query 240 NGCKH---PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N K + L+IDE H G + L+A+ + A + GD +Q + N + Sbjct 891 NFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTSSVKKSVSQEMVGGAAVINPIS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP ++ F K+ + +++ T QG T V VR + A S Sbjct 1011 KPSHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVALSRHTCSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 831 to 1095 Score:58.5 bits(140), Expect:2e-07, Method:Compositional matrix adjust., Identities:68/267(25%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + ++ + AE+IR G+ V N +TVDS ++ Sbjct 831 VDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANSSGIIVATKDNVKTVDSFMM 890 Query 240 NGCKH---PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N K + L+IDE H G + L+A+ + A + GD +Q + N + Sbjct 891 NFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTSSVKKSVSQEMVGGAAVINPIS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP ++ F K+ + +++ T QG T V VR + A S Sbjct 1011 KPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVALSRHTCSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 831 to 1095 Score:58.2 bits(139), Expect:2e-07, Method:Compositional matrix adjust., Identities:68/267(25%), Positives:114/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + ++ + AE+IR G+ V N +TVDS ++ Sbjct 831 VDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANSSGIIVATKDNVKTVDSFMM 890 Query 240 NGCKH---PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N K + L+IDE H G + L+A+ + A + GD +Q + N + Sbjct 891 NFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTSSVKKSVSQEMVGGAAVINPIS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP ++ F K+ + +++ T QG T V VR + A S Sbjct 1011 KPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVALSRHTCSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2251 to 2520 Score:58.2 bits(139), Expect:3e-07, Method:Compositional matrix adjust., Identities:67/272(25%), Positives:113/272(41%), Gaps:34/272(12%) Query 188 PGSGKSGIIKSAVTK-----KDLVVSAKKENCAEIIRDVKKM------KGLDVNAR--TV 234 PG GK+ + + L+++A K + EI+ V ++ L R T+ Sbjct 2251 PGGGKTTTLIKVFCETFSKVNSLILTANKSSREEILAKVNRIVLDEGDTPLQTRDRILTI 2310 Query 235 DSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVH 294 DS L+N + LY+DE F HAG A I + A+L GD +Q + L Sbjct 2311 DSYLMNNRGLTCKVLYLDECFMVHAGAAVACIEFTKCDSAILFGDSRQIRYGRCSELDTA 2370 Query 295 FNHEICTQVFHKS-----ISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKI------EIDT 343 ++ V +S +S RC V + +ST FY K + TTN + EI++ Sbjct 2371 VLSDLNRFVDDESRVYGEVSYRCPWDVCAWLST-FYPKTVATTNLVSAGQSSMQVREIES 2429 Query 344 TGSTKPKKDDLILTCFRGWVKQLQIDYKGNE--------IMTAAASQGLTRKGVYAVRYK 395 + + + LT + K L + ++T +QG T + V VR K Sbjct 2430 VDDVEYSSEFVYLTMLQSEKKDLLKSFGKRSRSSVEKPTVLTVHEAQGETYRKVNLVRTK 2489 Query 396 VNENPLYAPTSEHVNVLLTRTEDKIVWKTLAG 427 E+ + + H+ V L+R + + + L+ Sbjct 2490 FQEDDPFR-SENHITVALSRHVESLTYSVLSS 2520 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Pelargonium zonate spot virus isolate tomato] Sequence ID: Q9DUT3.1 Length: 962 Range 1: 683 to 837 Score:57.0 bits(136), Expect:5e-07, Method:Compositional matrix adjust., Identities:48/160(30%), Positives:77/160(48%), Gaps:14/160(8%) Query 173 PAAPYQVPTIGVYGVPGSGKSGIIKSA-VTKKDLVVSAKKENCAEIIR-------DVKKM 224 PA P + + GV G GK+ IK A V + DL+V+A K++ +I++ D+ + Sbjct 683 PAQPPKGNINLMDGVAGCGKTTAIKRAFVFESDLIVTANKKSSEDILKAMFRDTPDIGRN 742 Query 225 KGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCG 284 K RT DSVL++G H V+ + DE H G L A++ I ++ + GD +Q Sbjct 743 K-----VRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQIS 797 Query 285 FFNMMCLKVHFNHEICTQVFHKSI-SRRCTKSVTSVVSTL 323 F + L H++ + I + RC K V V + Sbjct 798 FVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVVECVKIM 837 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Korean] Sequence ID: P30738.2 Length: 1616 Range 1: 831 to 1095 Score:56.6 bits(135), Expect:8e-07, Method:Compositional matrix adjust., Identities:67/267(25%), Positives:113/267(42%), Gaps:18/267(6%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDV----NARTVDSVLL 239 V GVPG GK+ I S V + ++ + AE+IR G+ V N +TVDS ++ Sbjct 831 VDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANSSGIIVATKDNVKTVDSFMM 890 Query 240 NGCKH---PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKV 293 N K + L+IDE H G + L+ + + A + GD +Q + N + Sbjct 891 NFGKSTRCQFKRLFIDEGLMLHTGCVNFLVTMSLCEIAYVYGDTQQIPYINRVSGFPYPA 950 Query 294 HFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGS------T 347 HF +V + + RC VT ++ + M T++ + S + G+ + Sbjct 951 HFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTSSVKKSVSQEMVGGAAVINPIS 1010 Query 348 KPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSE 407 KP ++ F K+ + +++ T QG T V VR + A S Sbjct 1011 KPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068 Query 408 HVNVLLTRTEDKIVWKTLAGDPWIKTL 434 HV V L+R + + T+ DP + + Sbjct 1069 HVLVALSRHTCSLKYYTVVMDPLVSII 1095 >RecName: Full=Replicase large subunit; AltName: Full=209 kDa readthrough protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=150 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Soil-borne wheat mosaic virus strain Nebraska] Sequence ID: Q89249.1 Length: 1828 Range 1: 1027 to 1264 Score:55.5 bits(132), Expect:2e-06, Method:Compositional matrix adjust., Identities:68/242(28%), Positives:106/242(43%), Gaps:29/242(11%) Query 186 GVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRD-VKKMKGLDVN---ARTVDSVLLN 240 GVPG GKS I+ +A KD+V+ KE ++ +KK K + + RTVDS L++ Sbjct 1027 GVPGCGKSTWILNNANPMKDMVLCVGKEATEDLKEKFMKKHKCAESDLKRIRTVDSFLMH 1086 Query 241 GC-KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFN------MMCLKV 293 K T++ DEA HAG + I+ KK + GD +Q F N + K+ Sbjct 1087 DYDKFRAATVHFDEALMAHAGIVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKL 1146 Query 294 HFNHEICTQVFHKS---ISRRCTKS-------VTSVVSTLFYDKRMRTTNPRDSKIEIDT 343 + ++ ++S ++ TK VT+ S L + M+ PRD+K + + Sbjct 1147 AIDETEYVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNSVL---RSMKVVGPRDAK-PMTS 1202 Query 344 TGSTKPKKDDLILTCFRGWVKQLQIDYKGN---EIMTAAASQGLTRKGVYAVRYKVNENP 400 +D LT + L + E+ T +QG T V VR K EN Sbjct 1203 VHCVPYHRDAQYLTFTQSEKADLYKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENE 1262 Query 401 LY 402 +Y Sbjct 1263 IY 1264 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 842 to 1126 Score:53.9 bits(128), Expect:5e-06, Method:Compositional matrix adjust., Identities:69/287(24%), Positives:122/287(42%), Gaps:25/287(8%) Query 173 PAAP-YQVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGL---- 227 P+ P Q+ + GVPG GKS I S +V A+ + +R KG Sbjct 842 PSLPKTQLKVRLIDGVPGCGKSTWILSNCDLDRQIVLAEGREATDDLRRRFTEKGFPKKR 901 Query 228 -DVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFF 286 + RTV S +L + + DEA HAG + ++ ++ + GD KQ F Sbjct 902 CEERVRTVHSFMLKPLSRRFNSFHFDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFI 961 Query 287 NMM-CLKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDK------RMRTTNPRDSKI 339 N + + + ++ + H + RC + ++ Y + +TT+ D+K Sbjct 962 NRVEQISLKYSSFNVVEREHVRKTYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKS 1021 Query 340 EIDTTGSTK----PKKDDLILTCFRGWVKQLQ---IDYKGNEIMTAAASQGLTRKGVYAV 392 + ++G T PK+ LT + +++ KG + T +QG T + V V Sbjct 1022 K--SSGFTSLVKLPKEPVHYLTFLQAEKEEVSKHLAGVKGATVSTVHEAQGKTFERVNLV 1079 Query 393 RYKVNENPLY---APTSEHVNVLLTRTEDKIVWKTLAGDPWIKTLTA 436 R K+ +N LY A + + V LTR +V+ ++ D + ++A Sbjct 1080 RLKMTDNELYPGGAKSEPYTIVGLTRHTRSLVYYSVVEDRLYEDISA 1126 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Tobacco streak virus (strain WC)] Sequence ID: P89680.1 Length: 1094 Range 1: 791 to 1036 Score:52.0 bits(123), Expect:2e-05, Method:Compositional matrix adjust., Identities:68/253(27%), Positives:104/253(41%), Gaps:30/253(11%) Query 174 AAPYQVPTIGVY---GVPGSGKSGIIK-------SAVTKKDLVVSAKKENCAEIIRDVKK 223 AA VPT + GV G GK+ +K SA DLV+++ + + E+ + Sbjct 791 AALKLVPTFKITIVDGVAGCGKTTHLKKIARIDSSAAGSPDLVLTSNRSSSDELKEVIDC 850 Query 224 MKGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQC 283 + RTVDS L+ E L DE F HAG + A + + K+ + GD +Q Sbjct 851 PDVMKYRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQV 910 Query 284 GF------FNMMCLKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDS 337 F F M KV +I H +S+RC S+ F K+ + R S Sbjct 911 PFISRLPEFRMEHHKV--KGKISCTTDHLQMSKRC----HSLFKENFLQKQDCEVSERCS 964 Query 338 KIE----IDTTGSTKPKKDDLILTCFRGWVKQLQIDYKG---NEIMTAAASQGLTRKGVY 390 + I + +P++D L +T R K+ + G + I T +QG T V Sbjct 965 SLAELCPIQSVIQIQPERDVLYMTHTRA-DKETLMRIPGMPKDRIKTTHEAQGETWDHVV 1023 Query 391 AVRYKVNENPLYA 403 R N L++ Sbjct 1024 MFRLSKTTNLLHS 1036 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Ixora)] Sequence ID: Q66121.1 Length: 993 Range 1: 712 to 816 Score:51.2 bits(121), Expect:3e-05, Method:Compositional matrix adjust., Identities:37/106(35%), Positives:55/106(51%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKM---KGLDVNARTVDSVLL 239 V GV G GK+ IKS D+VV+A K++ ++ + K K RT DSVLL Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMVVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N C V + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 772 NECP-TVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain NT9)] Sequence ID: O40976.1 Length: 993 Range 1: 712 to 816 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:36/106(34%), Positives:55/106(51%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKM---KGLDVNARTVDSVLL 239 V GV G GK+ IKS D++V+A K++ ++ + K K RT DSVLL Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N C V + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 772 NECP-TVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Iizuka)] Sequence ID: Q83270.1 Length: 993 Range 1: 712 to 816 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:36/106(34%), Positives:55/106(51%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKM---KGLDVNARTVDSVLL 239 V GV G GK+ IKS D++V+A K++ ++ + K K RT DSVLL Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N C V + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 772 NECP-TVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain FNY)] Sequence ID: P17769.2 Length: 993 Range 1: 712 to 816 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:36/106(34%), Positives:55/106(51%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKM---KGLDVNARTVDSVLL 239 V GV G GK+ IKS D++V+A K++ ++ + K K RT DSVLL Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N C V + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 772 NECP-TVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain O)] Sequence ID: P20122.1 Length: 993 Range 1: 712 to 816 Score:50.8 bits(120), Expect:4e-05, Method:Compositional matrix adjust., Identities:36/106(34%), Positives:55/106(51%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKM---KGLDVNARTVDSVLL 239 V GV G GK+ IKS D++V+A K++ ++ + K K RT DSVLL Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACAFVRTADSVLL 771 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N C V + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 772 NECP-TVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Y)] Sequence ID: Q83264.1 Length: 993 Range 1: 693 to 817 Score:50.4 bits(119), Expect:6e-05, Method:Compositional matrix adjust., Identities:43/126(34%), Positives:61/126(48%), Gaps:8/126(6%) Query 167 ESLRTRPAAPYQVPT---IGVYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVK 222 ESL T Q PT V GV G GK+ IKS D++V+A K++ ++ + Sbjct 693 ESLSTVYGRSLQTPTGTISQVDGVAGCGKTMPIKSIFEPSTDMIVTANKKSAQDVRMALF 752 Query 223 KM---KGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGD 279 K K RT DSVLLN C V + DE H G L A+++ ++ +A+ GD Sbjct 753 KSSDSKEACTFVRTADSVLLNECP-TVSRVLEDEVVLLHFGQLCAVMSKLKAVRAICFGD 811 Query 280 PKQCGF 285 +Q F Sbjct 812 AEQIAF 817 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Brome mosaic virus] Sequence ID: P03588.1 Length: 961 Range 1: 670 to 954 Score:50.4 bits(119), Expect:6e-05, Method:Compositional matrix adjust., Identities:79/299(26%), Positives:124/299(41%), Gaps:58/299(19%) Query 174 AAPYQVPTIGVY---GVPGSGKSGIIKSAV-TKKDLVVSAKKENCAEIIR-----DVKKM 224 +A VPT + GV G GK+ IK A +DL+V+A +++ AE +R D Sbjct 670 SAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS-AEDVRMALFPDTYNS 728 Query 225 K-GLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQC 283 K LDV RT DS +++G L +DEA H G L + A+ + + + GD +Q Sbjct 729 KVALDV-VRTADSAIMHGVP-SCHRLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQI 786 Query 284 GF------FNMMCLKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDS 337 F F ++ + ++ V HK+ RC + V + V+ L R RD+ Sbjct 787 SFKSRDAGFKLLHGNLQYDRR---DVVHKTY--RCPQDVIAAVNLL-----KRKCGNRDT 836 Query 338 KIEIDTTGS------------------TKPKKDDLILT-----CFRGWVKQLQI--DYKG 372 K + T+ S P + L +T + K + D+ Sbjct 837 KYQSWTSESKVSRSLTKRRITSGLQVTIDPNRTYLTMTQADKAALQTRAKDFPVSKDWID 896 Query 373 NEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKIVW---KTLAGD 428 I T +QG++ V VR K + L+ E+ V LTR + + LAGD Sbjct 897 GHIKTVHEAQGISVDNVTLVRLKSTKCDLF-KHEEYCLVALTRHKKSFEYCFNGELAGD 954 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Olive latent virus 2 isolate Italy] Sequence ID: Q83943.1 Length: 908 Range 1: 631 to 773 Score:48.9 bits(115), Expect:1e-04, Method:Compositional matrix adjust., Identities:45/150(30%), Positives:71/150(47%), Gaps:18/150(12%) Query 186 GVPGSGKS-GIIKSA--VTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 242 GV G GK+ I+ +A K DL+++A K++ +I +K RTVDS LL Sbjct 631 GVAGCGKTYEIVHTADIFKKDDLILTANKKSQEDIFSQLKPGTDCAKRIRTVDSYLLKP- 689 Query 243 KHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMM-------CLKVHF 295 + L+IDEA H G L A + +L GD +Q F N++ LK+ Sbjct 690 DVQAKRLFIDEAGLVHPGKLLAAMRFAECDDCLLFGDSEQIPFVNIVESLQPAKFLKLEV 749 Query 296 N-HEICTQVFHKSISRRCTKSVTSVVSTLF 324 + E+ + + RC VT+ ++TL+ Sbjct 750 DAREV------RETTYRCPADVTATLATLY 773 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Q)] Sequence ID: P06011.1 Length: 991 Range 1: 711 to 815 Score:48.9 bits(115), Expect:2e-04, Method:Compositional matrix adjust., Identities:35/106(33%), Positives:54/106(50%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKM---KGLDVNARTVDSVLL 239 V GV G GK+ IKS D++V+A K++ ++ + K K RT DS+LL Sbjct 711 VDGVAGCGKTTAIKSMFNPSTDIIVTANKKSAQDVRYALFKSTDSKEACAFVRTADSILL 770 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N C V + +DE H G L A+++ + +A+ GD +Q F Sbjct 771 NDCP-TVSRVLVDEVVLLHFGQLCAVMSKLHAVRALCFGDSEQIAF 815 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Alfalfa mosaic virus (strain 425 / isolate Leiden)] Sequence ID: P03589.1 Length: 1126 Range 1: 836 to 1098 Score:48.5 bits(114), Expect:2e-04, Method:Compositional matrix adjust., Identities:69/266(26%), Positives:112/266(42%), Gaps:24/266(9%) Query 184 VYGVPGSGKSGIIK----SAVTKKDLVVSAKKENCAEIIR--DVKKMKGLDVNARTVDSV 237 V GV G GK+ IK S+ DL++++ + + E+ D + L RT DS Sbjct 836 VDGVAGCGKTTNIKQIARSSGRDVDLILTSNRSSADELKETIDCSPLTKLHY-IRTCDSY 894 Query 238 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNH 297 L++ + L DE F HAG + A + + + GD +Q F + V +H Sbjct 895 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 954 Query 298 EICTQVFHKSISRRCTKSVTSVVSTLFY-DKRMRTTNPRDSK----IEIDTTGSTKPKKD 352 ++ +V K I+ R T + FY +K+ TN R + + I++ S + + Sbjct 955 KLTGKVERKLITWRSPADATYCLEKYFYKNKKPVKTNSRVLRSIEVVPINSPVSVERNTN 1014 Query 353 DLIL--TCFRGWVKQLQIDYKG-NEIMTAAASQGLTRKGVYAVR-------YKVNENPLY 402 L L T V + Q KG + I T +QG T VY R +P+ Sbjct 1015 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLATGRDPIN 1074 Query 403 APTSEHVNVLLTRTEDKIVWKTLAGD 428 P + V L+R + + T+A D Sbjct 1075 GPCNGL--VALSRHKKTFKYFTIAHD 1098 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus-SYM] Sequence ID: P05080.2 Length: 1707 Range 1: 902 to 1160 Score:48.5 bits(114), Expect:2e-04, Method:Compositional matrix adjust., Identities:72/262(27%), Positives:111/262(42%), Gaps:20/262(7%) Query 184 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKKMKG----LDVNARTVDSVL 238 V GVPG GKS I+ SA D+V+S + ++I KG L +TVDS L Sbjct 902 VDGVPGCGKSTMIVNSANPCVDVVLSTGRAATDDLIERFAS-KGFPCKLKRRVKTVDSFL 960 Query 239 LNGCKHPV--ETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFN 296 ++ + + L+ DEA HAG + I K+ + GD Q F + +V Sbjct 961 MHCVDGSLTGDVLHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVS-QVDLR 1019 Query 297 HEICTQVFHKSISRRCT-KSVTSVVSTL--FYDKRMRTTNPRDS-----KIEIDTTGSTK 348 F +R T +S V + L +Y +RT N + KI S K Sbjct 1020 FSSLVGKFDIVTEKRETYRSPADVAAVLNKYYTGDVRTHNATANSMTVRKIVSKEQVSLK 1079 Query 349 PKKD--DLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTS 406 P + + + V L + ++ T SQG T K V VR K ++ + A Sbjct 1080 PGAQYITFLQSEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSI-ARGR 1138 Query 407 EHVNVLLTRTEDKIVWKTLAGD 428 E++ V L+R +V++T+ D Sbjct 1139 EYLIVALSRHTQSLVYETVKED 1160 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus PpK20] Sequence ID: Q9J942.2 Length: 1707 Range 1: 902 to 1160 Score:48.5 bits(114), Expect:2e-04, Method:Compositional matrix adjust., Identities:72/262(27%), Positives:111/262(42%), Gaps:20/262(7%) Query 184 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKKMKG----LDVNARTVDSVL 238 V GVPG GKS I+ SA D+V+S + ++I KG L +TVDS L Sbjct 902 VDGVPGCGKSTMIVNSANPCVDVVLSTGRAATDDLIERFAS-KGFPCKLKRRVKTVDSFL 960 Query 239 LNGCKHPV--ETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFN 296 ++ + + L+ DEA HAG + I K+ + GD Q F + +V Sbjct 961 MHCVDGSLTGDVLHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVS-QVDLR 1019 Query 297 HEICTQVFHKSISRRCT-KSVTSVVSTL--FYDKRMRTTNPRDS-----KIEIDTTGSTK 348 F +R T +S V + L +Y +RT N + KI S K Sbjct 1020 FSSLVGKFDIVTEKRETYRSPADVAAVLNKYYTGDVRTHNATANSMTVRKIVSKEQVSLK 1079 Query 349 PKKD--DLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTS 406 P + + + V L + ++ T SQG T K V VR K ++ + A Sbjct 1080 PGAQYITFLQSEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSI-ARGR 1138 Query 407 EHVNVLLTRTEDKIVWKTLAGD 428 E++ V L+R +V++T+ D Sbjct 1139 EYLIVALSRHTQSLVYETVKED 1160 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Tomato aspermy virus] Sequence ID: P28931.1 Length: 993 Range 1: 712 to 816 Score:47.8 bits(112), Expect:4e-04, Method:Compositional matrix adjust., Identities:31/106(29%), Positives:55/106(51%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEI---IRDVKKMKGLDVNARTVDSVLL 239 V GV G GK+ IK D++V+A K++ ++ + + K RT DS+L+ Sbjct 712 VDGVAGCGKTTAIKKMFNPATDVIVTANKKSALDVRQALFNCTDSKEATTFVRTADSILM 771 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N + V+ + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 772 ND-TNEVQRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cowpea chlorotic mottle virus] Sequence ID: P27752.1 Length: 958 Range 1: 638 to 824 Score:47.4 bits(111), Expect:4e-04, Method:Compositional matrix adjust., Identities:62/206(30%), Positives:90/206(43%), Gaps:49/206(23%) Query 148 SGLGLTGELVDPPFHEFAYESLRTRPAAPYQV----------PTIGVY---GVPGSGKSG 194 SGLG P F + Y ++ A YQV P+ + GV G GK+ Sbjct 638 SGLG-------PKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTT 690 Query 195 IIKSAVT-KKDLVVSAKKENCAEIIRDV------KKMKGLDVNARTVDSVLLNG---CKH 244 IKSA + LVV+A K++ AE +R+ V RT DS L++G CK Sbjct 691 AIKSASNIAEHLVVTANKKS-AEDVREALFPHNPSSEIAFKV-IRTADSALMHGLPRCKR 748 Query 245 PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF------FNMMCLKVHFN-H 297 L +DEA H G L A+ A+ + + + GD +Q F F + + F+ Sbjct 749 ----LLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSR 804 Query 298 EICTQVFHKSISRRCTKSVTSVVSTL 323 +I T+ + RC + V S V TL Sbjct 805 DIVTETW------RCPQDVISAVQTL 824 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Peanut stunt virus (strain J)] Sequence ID: P28726.1 Length: 1005 Range 1: 720 to 824 Score:46.2 bits(108), Expect:0.001, Method:Compositional matrix adjust., Identities:33/106(31%), Positives:52/106(49%), Gaps:5/106(4%) Query 184 VYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEI---IRDVKKMKGLDVNARTVDSVLL 239 V GV G GK+ IK DL+V+A K++ ++ + K RT DS+LL Sbjct 720 VDGVAGCGKTTAIKKLFQPATDLIVTANKKSAQDVRMALFGASDSKEACTFVRTADSILL 779 Query 240 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF 285 N V + +DE H G L A+++ ++ +A+ GD +Q F Sbjct 780 NDVPE-VSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAF 824 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Broad bean mottle virus] Sequence ID: Q00020.1 Length: 966 Range 1: 686 to 832 Score:44.3 bits(103), Expect:0.004, Method:Compositional matrix adjust., Identities:43/155(28%), Positives:70/155(45%), Gaps:21/155(13%) Query 182 IGVYGVPGSGKSGIIKSAVT-KKDLVVSAKKENCAEIIRDVKKMKGLDVNA-----RTVD 235 + V GV G GK+ IK +KD++V+A +++ AE +R D RT D Sbjct 686 VMVDGVAGCGKTTAIKETFRFEKDIIVTANRKS-AEDVRKAIFGDASDSEVALKVVRTAD 744 Query 236 SVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGF------FNMM 289 S +++G L +DEA H G L A+ + + + + GD +Q F F M Sbjct 745 SAIMHGLPE-CHRLLVDEAGLLHYGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMK 803 Query 290 CLKVHFN-HEICTQVFHKSISRRCTKSVTSVVSTL 323 + ++ +I ++ F RC + V S V L Sbjct 804 YCNIEYDKRDIVSKTF------RCPQDVVSAVKIL 832 >RecName: Full=RNA replication protein; Includes: RecName: Full=Methyltransferase; Includes: RecName: Full=Helicase; Includes: RecName: Full=RNA-directed RNA polymerase [Citrus leprosis virus C BRA/Cordeiropolis] Sequence ID: Q1KZ59.1 Length: 2512 Range 1: 1558 to 1682 Score:43.5 bits(101), Expect:0.008, Method:Compositional matrix adjust., Identities:34/125(27%), Positives:54/125(43%), Gaps:13/125(10%) Query 184 VYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKM------KGLDVNARTVDSV 237 V V G+GK+ ++ DLVV EN I +K+ K +D RT++ Sbjct 1558 VQAVAGAGKTTLLVETFLITDLVVCPTVENRDSIRLRIKRRYPDLDPKEVDCRVRTINGY 1617 Query 238 LLNGCKHPVET-------LYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC 290 L++ + L +DEA HAG L L I ++ GD KQ F + + Sbjct 1618 LVDFSTKLAKVTLNENTRLLVDEAIMYHAGCLFVLCMIYNIRRMFCVGDKKQIPFVSRID 1677 Query 291 LKVHF 295 K+++ Sbjct 1678 FKLNY 1682 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83045.2 Length: 2379 Range 1: 1575 to 1683 Score:41.2 bits(95), Expect:0.038, Method:Compositional matrix adjust., Identities:34/109(31%), Positives:49/109(44%), Gaps:9/109(8%) Query 188 PGSGKSGIIKSAVTK------KDLVVSAKKENCAEIIRDVKK--MKGLDVNARTVDSVLL 239 PG+GK+ I ++K K L +S K E+I +KK ++ + +T DS L+ Sbjct 1575 PGAGKTTTIAKLMSKDLKNKVKCLALSYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLM 1634 Query 240 NGCK-HPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFN 287 N + LY DE F HAG L+ I + GD Q F N Sbjct 1635 NNDNILEIVNLYCDEVFMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFIN 1683 >RecName: Full=Replicase polyprotein 1a; Contains: RecName: Full=Leader protease; Short=L-PRO; Contains: RecName: Full=Methyltransferase/helicase [Lettuce infectious yellows virus isolate 92] Sequence ID: Q83044.1 Length: 1873 Range 1: 1575 to 1683 Score:41.2 bits(95), Expect:0.039, Method:Compositional matrix adjust., Identities:34/109(31%), Positives:49/109(44%), Gaps:9/109(8%) Query 188 PGSGKSGIIKSAVTK------KDLVVSAKKENCAEIIRDVKK--MKGLDVNARTVDSVLL 239 PG+GK+ I ++K K L +S K E+I +KK ++ + +T DS L+ Sbjct 1575 PGAGKTTTIAKLMSKDLKNKVKCLALSYTKVGRLELIDKLKKDGIEKPEKYVKTYDSFLM 1634 Query 240 NGCK-HPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFN 287 N + LY DE F HAG L+ I + GD Q F N Sbjct 1635 NNDNILEIVNLYCDEVFMMHAGHFLTLLTKIAYQNGYCYGDVNQIPFIN 1683