TBLASTN 2.8.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= COX1_YEAST P00401 Cytochrome c oxidase subunit 1 (7.1.1.9
{ECO:0000269|PubMed:30598554}) (Cytochrome c oxidase polypeptide I)

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  unplaced-887                                                        245     1e-70
  scaffold-17                                                         42.4    6e-04
  scaffold-170                                                        31.2    1.6  
  unplaced-991                                                        30.8    2.2  
  scaffold-104                                                        28.5    9.7  


> unplaced-887
Length=30515

 Score = 245 bits (626),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 127/220 (58%), Positives = 156/220 (71%), Gaps = 11/220 (5%)
 Frame = -2

Query  284    GFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGIKIFSWLATIHGGSIRLATPMLYAIA  343
              G  ++ HHMY VGLD DTR+YF++ATMIIA+PTGIKIFSW+AT+ GG I  ++P+L+ I 
Sbjct  24382  GKYIFRHHMYTVGLDVDTRSYFSAATMIIAVPTGIKIFSWIATLAGGRINFSSPILFIIG  24203

Query  344    FLFLFTMGGLTGVALANASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGL  403
              FL LFT+GGLTGV L+NA LDV+ HDTYYVV HFHYVLSMGA+F+LFAG+YYW P I   
Sbjct  24202  FLILFTLGGLTGVVLSNAPLDVSLHDTYYVVAHFHYVLSMGAVFALFAGFYYWYPTITHK  24023

Query  404    NYNEKLAQIQFWLIFIGANVIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATL  463
                NE  A+I F LIFIG NV F PMH LG+ G PRRI DYPD+F G N +AS GSFI+ +
Sbjct  24022  MSNELWAKIHFALIFIGVNVTFGPMHILGMAGHPRRILDYPDSFLGINQLASFGSFISFI  23843

Query  464    SLFLFIYILYDQlvnglnnkvnnkSVIYNKAPDFVESNTI  503
              S+  F+  +Y            +  VIYN    F   NT+
Sbjct  23842  SIIPFLLSIY-----------FSNKVIYNNLSSFSLDNTV  23756


 Score = 217 bits (553),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 150/198 (76%), Gaps = 10/198 (5%)
 Frame = -3

Query  130    YPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSI  189
              YPPLSSI  HSG SVDL IFALHL  ISS+LG+IN+IV+ +N+R  G++  +L L+VWS+
Sbjct  25869  YPPLSSILYHSGFSVDLGIFALHLAGISSMLGSINYIVSVINLRAPGLSYSQLNLYVWSL  25690

Query  190    FITAFllllslpvlsAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILII  249
               ITA LL+L+LPVL+ GITMLL DRN+NTSF+E+  GGDP+LY+HLFWFFGHPEVYI+I+
Sbjct  25689  VITAILLILALPVLAGGITMLLTDRNWNTSFYEIQAGGDPVLYQHLFWFFGHPEVYIIIL  25510

Query  250    PGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSAT  309
              PGFGI+SH++S+ + +P+FG++ M++AM SIGLLGFLVW+  M            F S  
Sbjct  25509  PGFGIVSHIISSLTNRPIFGKLGMIFAMLSIGLLGFLVWAQMM----------GLFDSDV  25360

Query  310    MIIAIPTGIKIFSWLATI  327
               +I       IF +L+T+
Sbjct  25359  KVINFAICWNIFIYLSTL  25306


 Score = 98.6 bits (244),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 48/95 (51%), Positives = 67/95 (71%), Gaps = 1/95 (1%)
 Frame = -1

Query  4      RWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLEL-AAPGSQYLHGNSQLFNVLVVGH  62
              +WLYST+A+DI VLY +L+  SGM GT MSL+IRL+L     ++ L+  +Q +N ++  H
Sbjct  28679  KWLYSTDARDIGVLYLILSALSGMLGTMMSLLIRLQLMDVNQTEVLNLPNQAYNTIITVH  28500

Query  63     AVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPR  97
              A+LMIF+L+MPAL G FGN  LP +IGA D    +
Sbjct  28499  ALLMIFYLIMPALFGAFGNIFLPTLIGAMDKIKEK  28395


 Score = 44.7 bits (104),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 32/53 (60%), Gaps = 1/53 (2%)
 Frame = -1

Query  89     GATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP-PLSSIQAHS  140
              G    AFPR+NN++FW+L   L+  V++  +  G GTGWT+    L+S Q  +
Sbjct  27155  GNKSMAFPRLNNVSFWLLFSSLILAVSAMTLGEGIGTGWTMEMLSLNSTQCEN  26997


> scaffold-17
Length=2125590

 Score = 42.4 bits (98),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 21/43 (49%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
 Frame = -1

Query  423      VIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATLSL  465
                VI    +FLG  GMPRR  DYPDA+ GW    S   F+ +L L
Sbjct  1010445  VIIIQHYFLG*RGMPRRYLDYPDAYLGWMSFFSFLVFLCSLDL  1010317


> scaffold-170
Length=449377

 Score = 31.2 bits (69),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 0/24 (0%)
 Frame = +1

Query  138     AHSGPSVDLAIFALHLTSISSLLG  161
               + SGPSV++ ++ALHLT I+ L+ 
Sbjct  220744  SESGPSVEIHMYALHLTEITKLVN  220815


> unplaced-991
Length=39134

 Score = 30.8 bits (68),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 0/19 (0%)
 Frame = +3

Query  242    PEVYILIIPGFGIISHVVS  260
              PEVY+ + P FGI+SHV+S
Sbjct  15606  PEVYV*V*PAFGIVSHVLS  15662


> scaffold-104
Length=736462

 Score = 28.5 bits (62),  Expect = 9.7, Method: Compositional matrix adjust.
 Identities = 15/40 (38%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
 Frame = -3

Query  489     VIYNKAPDFVESNTIFNLNTVKSSSIEFLLTSPPAVHSFN  528
               + Y     F+ES+  +N N   SSS  + + SP +VHS N
Sbjct  660623  IDYKSTDSFMESDANYNFNKRFSSSDIYAIASPNSVHSSN  660504



Lambda      K        H        a         alpha
   0.329    0.142    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3359635087


  Database: X5.fasta
    Posted date:  Nov 14, 2021  4:50 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40