TBLASTN 2.8.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= RS9A_YEAST O13516 40S ribosomal protein S9-A
{ECO:0000303|PubMed:9559554} (RP21) (S13) (Small ribosomal subunit
protein uS4-A {ECO:0000303|PubMed:24524803}) (YP28) (YS11)

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-693                                                        256     2e-79
  scaffold-243                                                        255     1e-78
  scaffold-17                                                         52.4    3e-08
  scaffold-444                                                        51.2    7e-08
  scaffold-423                                                        34.7    0.022


> scaffold-693
Length=1268102

 Score = 256 bits (655),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 144/170 (85%), Gaps = 0/170 (0%)
 Frame = -2

Query  6       RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEK  65
               R  SKT   P+RPYE+ RLD ELKLAGE+GL+NK+EI+RI   LSKIRRAAR+LLT +EK
Sbjct  265339  RAKSKTAKVPRRPYEAERLDHELKLAGEYGLRNKREIWRIGLTLSKIRRAARELLTLEEK  265160

Query  66      DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHA  125
               D +RLFEGNALIRRL+R+GVL E K KLDYVL L+VEDFLERRLQT V+K GLAKS+HHA
Sbjct  265159  DTRRLFEGNALIRRLIRMGVLDETKAKLDYVLGLRVEDFLERRLQTLVFKAGLAKSIHHA  264980

Query  126     RVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARR  175
               RVLI  RHI VGKQIV+IPSF+VRLDS KHIDFA TSP GG RPGRV RR
Sbjct  264979  RVLIK*RHIRVGKQIVDIPSFVVRLDS*KHIDFALTSPLGGGRPGRVKRR  264830


> scaffold-243
Length=448935

 Score = 255 bits (651),  Expect = 1e-78, Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 144/170 (85%), Gaps = 0/170 (0%)
 Frame = -2

Query  6      RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEK  65
              R  SKT   P+RPYE+ RLD ELKLAGE+GL+NK+EI+RI   LSKIRRAAR+LLT +EK
Sbjct  20054  RAKSKTAKVPRRPYEAERLDHELKLAGEYGLRNKREIWRIGLTLSKIRRAARELLTLEEK  19875

Query  66     DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHA  125
              D +RLFEGNALIRRL+R+GVL E K KLDYVL L+VEDFLERRLQT V+K GLAKS+HHA
Sbjct  19874  DTRRLFEGNALIRRLIRMGVLDETKAKLDYVLGLRVEDFLERRLQTLVFKAGLAKSIHHA  19695

Query  126    RVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARR  175
              RVLI  RHI VGKQIV+IPSF+VRLDS KHIDFA TSP GG RPGRV RR
Sbjct  19694  RVLIK*RHIRVGKQIVDIPSFVVRLDS*KHIDFALTSPLGGGRPGRVKRR  19545


> scaffold-17
Length=2125590

 Score = 52.4 bits (124),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 35/131 (27%), Positives = 66/131 (50%), Gaps = 1/131 (1%)
 Frame = +1

Query  34      FGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKL  93
               + L+++++  + +    +IR+ A  +   D KDP R      L+ +L  +GV+++ K  L
Sbjct  903832  YHLQSREDYTKYNRICGQIRQMANKISLLDPKDPFRSDMET*LLEKLYFIGVINQ-KHAL  904008

Query  94      DYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSE  153
                    + V  F  RRL   + +L +A+++  A  +I Q HI  G   V  P+F+V  + E
Sbjct  904009  SLCEKVSVSAFCRRRLPVVMLRLKMAENIRDATRMIEQGHIRAGPHCVTDPAFLVDRNME  904188

Query  154     KHIDFAPTSPF  164
                 + +  TS +
Sbjct  904189  DFVTWVNTSAY  904221


> scaffold-444
Length=851481

 Score = 51.2 bits (121),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 1/131 (1%)
 Frame = +2

Query  34      FGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKL  93
               + L+++++  + +    +IR+ A  +   D KDP R      L+ +L  +GV++  K  L
Sbjct  178958  YHLQSREDYTKYNRICGQIRQLANKISLLDPKDPFRSDMET*LLDKLYFIGVIN*-KHAL  179134

Query  94      DYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSE  153
                    + V  F  RRL   + +L +A+++  A  +I Q HI VG   V  P+F+V  + E
Sbjct  179135  SLCEKVSVSAFCRRRLPVVMLRLKMAENIRDATRMIEQGHIRVGPHCVTDPAFLVDRNME  179314

Query  154     KHIDFAPTSPF  164
                 + +  TS +
Sbjct  179315  DFVTWVNTSAY  179347


> scaffold-423
Length=1446679

 Score = 34.7 bits (78),  Expect = 0.022, Method: Compositional matrix adjust.
 Identities = 16/45 (36%), Positives = 28/45 (62%), Gaps = 0/45 (0%)
 Frame = -1

Query  104     FLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMV  148
               F+ER+LQT +++     SV+ AR LI    ++V  ++V  PS++ 
Sbjct  137947  FMERQLQTILFRACFVTSVNEARHLIRTGMVSVNGRVVKYPSYIC  137813



Lambda      K        H        a         alpha
   0.321    0.137    0.385    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 812620328


  Database: X5.fasta
    Posted date:  Nov 14, 2021  4:50 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40