RID: TPXS34KW016 Job Title:Nucleotide Sequence Program: BLASTX Query: None ID: lcl|Query_51299(dna) Length: 79072 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=LINE-1 retrotransposable element ORF2 protein;... Mus musculus house mouse 10090 683 8388 24% 0.0 53.68 1281 P11369.2 RecName: Full=LINE-1 retrotransposable element ORF2 protein;... Homo sapiens human 9606 484 6019 22% 0.0 49.68 1275 O00370.1 RecName: Full=LINE-1 reverse transcriptase homolog [Nycticebus... Nycticebus c... slow loris 9470 465 5450 21% 0.0 48.11 1260 P08548.1 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Golden hamst... NA 11752 301 911 3% 0.0 47.62 863 P04026.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 39068 275 1200 5% 0.0 43.59 1768 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 273 1190 5% 0.0 44.90 1726 P31623.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180;... Mason-Pfizer... NA 11855 270 1179 6% 0.0 43.95 1771 P07572.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Simian retro... NA 11942 261 1190 5% 0.0 42.36 1772 P04025.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Squirrel mon... NA 11856 256 1026 5% 0.0 42.90 1880 P03364.3 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11754 339 808 2% 5e-131 53.79 814 P12894.1 RecName: Full=Intracisternal A-particle Pol-related polyprotei... Mouse intrac... NA 11753 362 900 3% 3e-130 53.02 867 P11368.1 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11758 239 956 5% 1e-128 41.21 1755 P03365.3 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName:... Mouse mammar... NA 11759 238 952 5% 2e-128 41.53 1755 P11283.2 RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contain... Mason-Pfizer... NA 11855 233 437 3% 6e-113 29.61 911 P07570.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 11942 214 447 2% 2e-109 39.24 912 P04024.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Jaagsiekte s... NA 11746 204 491 2% 1e-108 39.20 866 P31625.3 RecName: Full=Intracisternal A-particle Gag-related polyprotei... Golden hamst... NA 11752 318 430 2% 5e-92 36.86 572 P04023.1 RecName: Full=Endogenous retrovirus group K member 18 Pol... Homo sapiens human 9606 236 561 2% 2e-82 42.86 812 Q9QC07.2 RecName: Full=Endogenous retrovirus group K member 11 Pol... Homo sapiens human 9606 234 581 2% 3e-82 42.54 969 Q9UQG0.2 RecName: Full=Endogenous retrovirus group K member 10 Pol... Homo sapiens human 9606 233 578 2% 7e-82 42.22 1014 P10266.2 RecName: Full=Endogenous retrovirus group K member 25 Pol... Homo sapiens human 9606 233 575 2% 1e-81 42.22 954 P63136.1 RecName: Full=Endogenous retrovirus group K member 113 Pol... Homo sapiens human 9606 233 643 3% 1e-81 42.22 956 P63132.1 RecName: Full=Endogenous retrovirus group K member 8 Pol... Homo sapiens human 9606 233 579 2% 2e-81 42.54 956 P63133.1 RecName: Full=Endogenous retrovirus group K member 6 Pol... Homo sapiens human 9606 233 579 2% 2e-81 42.54 956 Q9BXR3.2 RecName: Full=Endogenous retrovirus group K member 7 Pol... Homo sapiens human 9606 231 578 2% 3e-81 42.22 1459 P63135.1 RecName: Full=LINE-1 retrotransposable element ORF1 protein;... Mus musculus house mouse 10090 277 1240 4% 1e-80 45.92 357 P11260.2 RecName: Full=Endogenous retrovirus group K member 19 Pol... Homo sapiens human 9606 227 574 2% 4e-79 41.90 959 Q9WJR5.2 RecName: Full=Intracisternal A-particle Gag-related polyprotei... Mouse intrac... NA 11753 281 509 2% 1e-76 38.88 827 P11365.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 269447 170 474 3% 4e-68 35.87 1603 O92956.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 269446 169 471 3% 9e-68 35.87 1603 Q04095.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Rous sarcoma... NA 11888 166 469 3% 8e-67 35.87 1603 P03354.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Mason-Pfizer... NA 11855 233 233 2% 3e-62 29.61 657 P07567.3 RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse... Avian leukos... NA 11864 169 345 2% 2e-60 35.87 895 Q7SQ98.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Simian retro... NA 11942 214 214 1% 7e-56 39.24 658 P04022.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Simian retro... NA 39068 213 213 1% 2e-55 39.12 654 P51516.3 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Simian retro... NA 39068 213 440 2% 1e-53 39.55 908 P51518.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Jaagsiekte s... NA 11746 206 252 1% 3e-53 39.20 612 P31622.1 RecName: Full=IgE-binding protein [Mus musculus] Mus musculus house mouse 10090 169 301 1% 2e-41 42.15 557 P03975.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Squirrel mon... NA 11856 146 338 2% 5e-40 38.22 998 P21407.2 RecName: Full=Envelope glycoprotein; AltName: Full=Env... Mouse Intrac... NA 11932 165 165 1% 6e-40 35.14 584 P31789.1 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11758 165 311 1% 1e-38 43.91 860 P10271.2 RecName: Full=Gag-Pro polyprotein; Contains: RecName:... Mouse mammar... NA 11759 164 307 1% 1e-38 43.91 860 Q9IZT2.1 RecName: Full=Cytochrome P450 2C16; AltName: Full=CYPIIC16... Oryctolagus ... rabbit 9986 150 693 2% 2e-35 50.00 487 P15123.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11670 109 262 1% 6e-35 28.03 1146 P11204.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 31675 109 261 1% 8e-35 28.03 1146 P32542.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 406769 115 259 1% 1e-34 30.55 1440 Q4U0X6.4 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-3 strai... NA 402036 114 258 1% 1e-34 30.91 1440 Q0R5R2.3 RecName: Full=Endogenous retrovirus group K member 6 Gag... Homo sapiens human 9606 150 197 1% 2e-34 30.55 666 Q7LDI9.3 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA 11672 108 259 1% 2e-34 27.43 1145 P03371.1 RecName: Full=Endogenous retrovirus group K member 8 Gag... Homo sapiens human 9606 149 196 1% 2e-34 30.55 647 P62685.2 RecName: Full=Endogenous retrovirus group K member 7 Gag... Homo sapiens human 9606 149 149 1% 3e-34 30.55 666 P63130.2 RecName: Full=Endogenous retrovirus group K member 9 Gag... Homo sapiens human 9606 149 196 1% 3e-34 30.55 666 P63126.2 RecName: Full=Endogenous retrovirus group K member 113 Gag... Homo sapiens human 9606 149 196 1% 3e-34 30.26 666 P62684.2 RecName: Full=Endogenous retrovirus group K member 10 Gag... Homo sapiens human 9606 149 149 1% 4e-34 30.55 666 P87889.4 RecName: Full=Endogenous retrovirus group K member 24 Gag... Homo sapiens human 9606 148 196 1% 6e-34 30.55 666 P63145.2 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Mouse mammar... NA 11758 146 146 1% 1e-33 31.37 591 P10258.3 RecName: Full=Cytochrome P450 2C5; AltName: Full=CYPIIC5;... Oryctolagus ... rabbit 9986 142 672 2% 4e-33 47.56 487 P00179.2 RecName: Full=Endogenous retrovirus group K member 9 Pol... Homo sapiens human 9606 148 554 3% 5e-33 30.77 1117 P63128.3 RecName: Full=Endogenous retrovirus group K member 21 Gag... Homo sapiens human 9606 145 192 1% 5e-33 29.97 666 P62683.2 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix... Mouse mammar... NA 11759 144 144 1% 7e-33 30.75 591 P11284.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Squirrel mon... NA 11856 145 145 1% 1e-32 33.77 740 P21411.3 RecName: Full=Cytochrome P450 2C37; AltName: Full=CYPIIC37;... Mus musculus house mouse 10090 141 691 2% 1e-32 50.00 490 P56654.2 RecName: Full=Endogenous retrovirus group K member 19 Gag... Homo sapiens human 9606 144 191 1% 2e-32 29.97 666 Q9YNA8.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... HTLV-1 isola... NA 402046 103 307 2% 3e-31 30.90 1462 P0C211.2 RecName: Full=Cytochrome P450 2C9; AltName: Full=(R)-limonene... Homo sapiens human 9606 137 676 2% 3e-31 47.56 490 P11712.3 RecName: Full=Cytochrome P450 2C4; AltName: Full=CYPIIC4;... Oryctolagus ... rabbit 9986 136 662 2% 4e-31 47.56 487 P11371.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-lymp... NA 11909 100 285 2% 1e-29 31.21 1461 P03363.4 RecName: Full=Endogenous retrovirus group K member 5 Gag... Homo sapiens human 9606 132 132 1% 1e-28 31.21 667 Q9HDB9.3 RecName: Full=LINE-1 retrotransposable element ORF1 protein;... Homo sapiens human 9606 126 309 1% 1e-28 44.83 338 Q9UN81.1 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 11674 99.4 227 1% 2e-28 30.92 1124 P16088.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11713 102 214 1% 6e-27 39.67 1462 P17757.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1 NA 388822 101 211 1% 8e-27 34.76 1471 Q76634.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO NA 388821 101 207 1% 2e-26 35.00 1464 Q89928.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11733 99.8 211 1% 2e-26 35.82 1448 P05896.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11737 99.8 209 1% 2e-26 38.04 1449 P12502.2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11738 99.4 209 1% 3e-26 38.04 1449 P19505.2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA 31676 94.7 219 1% 4e-26 31.73 1124 P31822.1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11717 99.8 209 1% 4e-26 39.46 1464 P18042.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11715 100 211 1% 4e-26 40.22 1462 P24107.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11718 99.0 209 1% 8e-26 39.66 1462 P12451.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11926 104 305 2% 8e-26 32.27 1462 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... Human T-cell... NA 11927 103 308 2% 1e-25 32.27 1462 P14078.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11719 97.1 207 1% 2e-25 38.59 1461 P05962.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11721 97.1 206 1% 2e-25 38.50 1463 P20876.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 73484 96.3 207 1% 3e-25 36.46 1463 Q74120.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11720 95.9 205 1% 4e-25 38.25 1464 P04584.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11714 95.1 208 1% 7e-25 40.76 1550 P18096.4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA 11716 100 206 1% 8e-25 34.29 1465 P15833.3 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA 11735 99.4 139 0% 9e-24 36.98 1446 P05897.2 RecName: Full=Cytochrome P450 2C50; AltName: Full=CYPIIC50 [Mu... Mus musculus house mouse 10090 114 767 2% 2e-23 69.23 490 Q91X77.2 RecName: Full=Cytochrome P450 2C26; AltName: Full=CYPIIC26;... Mesocricetus... golden hamster 10036 113 834 1% 2e-23 70.67 490 P33263.1 RecName: Full=Cytochrome P450 2C39; AltName: Full=CYPIIC39;... Mus musculus house mouse 10090 113 839 1% 2e-23 73.33 490 P56656.2 RecName: Full=Cytochrome P450 2C44; AltName: Full=Arachidonic... Mus musculus house mouse 10090 112 484 1% 4e-23 38.79 494 E9Q5K4.1 RecName: Full=Cytochrome P450 2C38; AltName: Full=CYPIIC38;... Mus musculus house mouse 10090 112 755 1% 7e-23 69.23 490 P56655.2 RecName: Full=Cytochrome P450 2C54; AltName: Full=CYPIIC54 [Mu... Mus musculus house mouse 10090 109 744 2% 3e-22 68.83 490 Q6XVG2.1 RecName: Full=Cytochrome P450 2C25; AltName: Full=CYPIIC25;... Mesocricetus... golden hamster 10036 109 838 1% 4e-22 68.00 490 Q08078.1 RecName: Full=Cytochrome P450 2C27; AltName: Full=CYPIIC27;... Mesocricetus... golden hamster 10036 108 822 1% 1e-21 73.53 490 P33264.1 RecName: Full=Cytochrome P450 2C29; AltName: Full=Aldehyde... Mus musculus house mouse 10090 108 726 2% 1e-21 65.38 490 Q64458.2 RecName: Full=Cytochrome P450 2C19; AltName: Full=(R)-limonene... Homo sapiens human 9606 108 701 2% 1e-21 76.67 490 P33261.3 RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Caprine arth... NA 11661 82.8 214 1% 4e-13 42.20 1109 P33459.1 Alignments: >RecName: Full=LINE-1 retrotransposable element ORF2 protein; Short=ORF2p; AltName: Full=Long interspersed element-1; Short=L1; AltName: Full=Retrovirus-related Pol polyprotein LINE-1; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease [Mus musculus] Sequence ID: P11369.2 Length: 1281 Range 1: 491 to 1246 Score:683 bits(1762), Expect:0.0, Method:Compositional matrix adjust., Identities:416/775(54%), Positives:495/775(63%), Gaps:43/775(5%) Query 54501 FIEDIIPILSILFHKIETDRALSVFFYEAtttlkpkpktqqrkrTSDQFPL*ISTDKYTI 54322 F ED+IPIL LFHKIE + L FYEAT TL PKP+ K + + ++ D + Sbjct 491 FKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKIL 550 Query 54321 NFCNPNP-RTH*ND--HP**SSSSIPRVQGSFNIQKSINVIRYINKLKDKNHIIISLHAE 54151 N N + H HP IP +QG FNI+KSINVI YINKLKDKNH+IISL AE Sbjct 551 NKILANRIQEHIKAIIHPD-QVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISLDAE 609 Query 54150 KAFDKIQHPFMTKALERSEIQGPN*A**KQNTAKQ*VTLKSMKSNMKQFH*NQGLHETAH 53971 KAFDKIQHPFM K LERS IQGP K +K +K ++ G T Sbjct 610 KAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSG---TRQ 666 Query 53970 SLPIYSM*YAKF*P*QSDKERRSK*YK-LEGKKSNMTICR*YDSIL---K*PQKFYQRTI 53803 P+ + + R+ K K ++ K + I D ++ P+ + + Sbjct 667 GCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVKISLLADDMIVYISDPKNSTRELL 726 Query 53802 NQLKKFNKMSRDKINSNK*VAFFYSKDKQAEKEIREMAPFMIVSNK*IKYLDMTLTKQVK 53623 N + F ++ KINSNK +AF Y+K+KQAEKEIRE PF IV+N IKYL +TLTK+VK Sbjct 727 NLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIVTNN-IKYLGVTLTKEVK 785 Query 53622 DLYDKNFKSLKKEIKEYLRRRTDLSCSWIGRIDLVKMAILPKAINRFNAIPIKFPT*FFI 53443 DLYDKNFKSLKKEIKE LRR DL CSWIGRI++VKMAILPKAI RFNAIPIK PT FF Sbjct 786 DLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFN 845 Query 53442 EIERTICKFLWNKKRNRIEKNILNNKRTSGGVTIPNLKQYYRAIVIKTVIGTETGR-LYQ 53266 E+E ICKF+WN K+ RI K++L +KRTSGG+T+P+LK YYRAIVIKT R + Q Sbjct 846 ELEGAICKFVWNNKKPRIAKSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQ 905 Query 53265 WNRTEYPEINPQTHGHMIFVKGAKIIQWKKDSIFKQWC*FNWRSACRRMWIDPFLSPCTK 53086 WNR E PE+NP T+GH+IF KGAK IQWKKDSIF WC NW +CRRM IDP+LSPCTK Sbjct 906 WNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYLSPCTK 965 Query 53085 HKFKWINNLHIKPDTLKLIEEKVRKMLEHIGIGENFMNKTPTAYALRTRIDK*DLKKLQS 52906 K KWI LHIKP+TLKLIEEKV K LE +G GE F+N+T A A+R+RIDK DL KLQS Sbjct 966 VKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQS 1025 Query 52905 YVRKKTPALGQNGNQQIGKRSLSILHLMEG*YPKYTKNSRS*TPDSQITLLKVGYRVKQR 52726 + + K +R + Y K+ R + L KV +R Sbjct 1026 FCKAKDTVNKTKRPPTDWERIFT-----------YPKSDRGLISNIYKELKKVDFRKSNN 1074 Query 52725 ILS*GISNGCEACKEI----------------TSLVIGEMQIKTTLRFHLIPVRMNKIKI 52594 + G E KE TSL+I EMQIKTTLRFHL PVRM KIK Sbjct 1075 PIK---KWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKN 1131 Query 52593 SGDSRCLQGCGERETLVHCW*D*KLVELFWKSVWMFLRKLDIPLPEDPVIPLLGIYPNGT 52414 SGDSRC +GCGER TL+HCW + +LV+ WKSVW FLRKLDI LPEDP IPLLGIYP Sbjct 1132 SGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDA 1191 Query 52413 PTYNKETCSYMFIAA*FPISRRWKEPRCPSTEEWIQKMWYIYTKEYY*SIKNNDW 52249 PT K+TCS MFIAA F I+R WKEPRCPSTEEWIQKMWYIYT EYY +IK N++ Sbjct 1192 PTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEF 1246 Range 2: 705 to 1174 Score:664 bits(1713), Expect:0.0, Method:Compositional matrix adjust., Identities:335/477(70%), Positives:386/477(80%), Gaps:15/477(3%) Query 63346 SLFSHDRIVYLSDPKNSTRELLNLINTYSKVAGNKINSNKSVAFLYTKEKQAEKEIREMT 63167 SL + D IVY+SDPKNSTRELLNLIN++ +V G KINSNKS+AFLYTK KQAEKEIRE T Sbjct 705 SLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETT 764 Query 63166 PFIIVPNNIKYLGVTLTKQVKYLYDKNFKPLKKEIEEDLRRWKDLPCLWIGKINIEKWPL 62987 PF IV NNIKYLGVTLTK+VK LYDKNFK LKKEI+EDLRRWKDLPC WIG+INI K + Sbjct 765 PFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAI 824 Query 62986 YKRDLQIQCNPHQNTKPIPQRVIQKNF--------QIHLDNKKLRIAKTILNNKKTSWGT 62831 + + IP ++ + F + +NKK RIAK++L +K+TS G Sbjct 825 LPKAIY-------RFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLKDKRTSGGI 877 Query 62830 TIPELKQYYRAIVIKTAWY*YRDRQIDQWNRIEDPEMNPHTYGHLIFDKGPKTIPWEKDS 62651 T+P+LK YYRAIVIKTAWY YRDRQ+DQWNRIEDPEMNPHTYGHLIFDKG KTI W+KDS Sbjct 878 TMPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDS 937 Query 62650 IFSKWCWFNWRSACRRMQVDPCLSPYT*LKSQWIKELHIKPYTLKLIEEKVGKHLEHMGT 62471 IF+ WCW NW +CRRM++DP LSP T +KS+WIKELHIKP TLKLIEEKVGK LE MGT Sbjct 938 IFNNWCWHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGT 997 Query 62470 GENFRNKTPMTYPLRSRINKWDLIKLQSFCKAKGTVVRTKQEPTDCAKIFTNRTTERGLI 62291 GE F N+T M +RSRI+KWDL+KLQSFCKAK TV +TK+ PTD +IFT ++RGLI Sbjct 998 GEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIFTYPKSDRGLI 1057 Query 62290 SKIYKELKKFNCRETNNPIKKCGSELNKDFTA*KCRMAEKHLKKCSTSLVIREMQIKTTL 62111 S IYKELKK + R++NNPIKK GSELNK+F+ + RMAEKHLKKCSTSL+IREMQIKTTL Sbjct 1058 SNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTL 1117 Query 62110 RFHLTPVRMAKIKTSGDSKCRQGCGERGTVLHFWWDCRLVQPFWKSVWRFPRKLDIT 61940 RFHLTPVRMAKIK SGDS+C +GCGERGT+LH WW+CRLVQP WKSVWRF RKLDI Sbjct 1118 RFHLTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIV 1174 Range 3: 6 to 415 Score:520 bits(1339), Expect:0.0, Method:Compositional matrix adjust., Identities:278/416(67%), Positives:326/416(78%), Gaps:18/416(4%) Query 65423 TNITGSTNHYSLISLNINGLNSPIKRHRLTNWIRNEDPAFCCLQ*THLSGKERHYLRVKG 65244 T I GS N++SLISLNINGLNSPIKRHRLT+W+ +DP FCCLQ THL K+RHYLRVKG Sbjct 6 TKIKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVKG 65 Query 65243 WKKTFQANGLKKQAGIDILISNKINFQLKVIKQDkkghfifikgkiHQDELAILNVSATN 65064 WK FQANGLKKQAG+ ILIS+KI+FQ KVIK+DK+GHFI IKGKI Q+EL+ILN+ A N Sbjct 66 WKTIFQANGLKKQAGVAILISDKIDFQPKVIKKDKEGHFILIKGKILQEELSILNIYAPN 125 Query 65063 TRAPTYIKETLLELKAHIAPHTIIVGDFNTPLSSMDR*WKQKLNRDIDRLREIMNQMDLT 64884 RA T+I++TL++LKA+IAPHTIIVGDFNTPLSS DR WKQKLNRD +L E+M QMDLT Sbjct 126 ARAATFIRDTLVKLKAYIAPHTIIVGDFNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLT 185 Query 64883 DIYRTFYPTTKGYTLFSPPHGTFSKIDHIISHKTGLNRYRKIKIITCVLSHHHGLKLVFN 64704 DIYRTFYP TKGYT FS PHGTFSKIDHII HKTGLNRY+ I+I+ C+LS HHGL+L+FN Sbjct 186 DIYRTFYPKTKGYTFFSAPHGTFSKIDHIIGHKTGLNRYKNIEIVPCILSDHHGLRLIFN 245 Query 64703 NN------------KRRMEVEQCSSQ**PGQRRNKERN**TSEFNENEGTTYTNL*DTME 64560 NN + + + G ++ + EFNENE TTY NL DTM+ Sbjct 246 NNINNGKPTFTWKLNNTLLNDTLVKE---GIKKEIKD---FLEFNENEATTYPNLWDTMK 299 Query 64559 DVLRRTLIDLSACRKKQERVYISSLAAQLKALEQKEGNTPRRSRRQKIIKLRAEINQVET 64380 LR LI LSA +KK+E + SSL LKALE+KE N+P+RSRRQ+IIKLR EINQVET Sbjct 300 AFLRGKLIALSASKKKRETAHTSSLTTHLKALEKKEANSPKRSRRQEIIKLRGEINQVET 359 Query 64379 KRTIQRINRTKSWFSEKINKIQKPLARLMRGHRDCVQINKIRNEKGDITTV*EEFK 64212 +RTIQRIN+T+SWF EKINKI KPLARL +GHRD + INKIRNEKGDITT EE + Sbjct 360 RRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQ 415 Range 4: 153 to 586 Score:493 bits(1269), Expect:0.0, Method:Compositional matrix adjust., Identities:274/440(62%), Positives:317/440(72%), Gaps:12/440(2%) Query 17575 FQKPTLINGQIMETEINKDIHRLREVMNQIDLTDTYRIFYTKEKGYMFYSPPHITFSKID 17396 F P + + ++N+D +L EVM Q+DLTD YR FY K KGY F+S PH TFSKID Sbjct 153 FNTPLSSKDRSWKQKLNRDTVKLTEVMKQMDLTDIYRTFYPKTKGYTFFSAPHGTFSKID 212 Query 17395 HIIGDKTGLNR*RKIEIIPCILSDHHGLNQVFNNK-RGRMPTYTWKLNNALLNDNLVKKE 17219 HIIG KTGLNR + IEI+PCILSDHHGL +FNN PT+TWKLNN LLND LVK+ Sbjct 213 HIIGHKTGLNRYKNIEIVPCILSDHHGLRLIFNNNINNGKPTFTWKLNNTLLNDTLVKEG 272 Query 17218 IKK*IKDFLELNKNEGKTSPNLWDTMKAVLRGKHIGLSARRKKQEKAYVSSLTAHLKALE 17039 IKK IKDFLE N+NE T PNLWDTMKA LRGK I LSA +KK+E A+ SSLT HLKALE Sbjct 273 IKKEIKDFLEFNENEATTYPNLWDTMKAFLRGKLIALSASKKKRETAHTSSLTTHLKALE 332 Query 17038 QKEANTPRRNRRQEIIKLRAEINQVETKRTIG*INRTKSWFSEKINKKDKPLARLMRGHI 16859 +KEAN+P+R+RRQEIIKLR EINQVET+RTI IN+T+SWF EKINK DKPLARL +GH Sbjct 333 KKEANSPKRSRRQEIIKLRGEINQVETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHR 392 Query 16858 ECVQINKIRNEKGDIAIESEEIQKKSSDPTTKAYIP--QNLKICRKWTIS*TGTRYRS*I 16685 + + INKIRNEKGDI + EEIQ + Y +NL K+ RY+ Sbjct 393 DKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFL-----DRYQVPK 447 Query 16684 RNR*TI--*TTP*LLTK*KQSLKVSQP-KRVQAQTGLVQRSNQTFIEDLIPILSKLFHKI 16514 N+ + +P + K +++ S P K+ G QTF EDLIPIL KLFHKI Sbjct 448 LNQDQVDHLNSP-ISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKI 506 Query 16513 ETDGALPNSFYEATITLIPKPHKDPTKKENFRPISPMNIDAKILNKILANRIQEHIKTII 16334 E +G LPNSFYEATITLIPKP KDPTK ENFRPIS MNIDAKILNKILANRIQEHIK II Sbjct 507 EVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAII 566 Query 16333 HHDQVGFIPDMQGWFNIQKA 16274 H DQVGFIP MQGWFNI+K+ Sbjct 567 HPDQVGFIPGMQGWFNIRKS 586 Range 5: 946 to 1278 Score:475 bits(1222), Expect:0.0, Method:Compositional matrix adjust., Identities:236/333(71%), Positives:268/333(80%), Gaps:3/333(0%) Query 15203 NWRSACRRMQINPCLSPCTKHKSKWIKDIHIKPDTLKLIEENVGKHLEHMGTGE*FLNKT 15024 NW +CRRM+I+P LSPCTK KSKWIK++HIKP+TLKLIEE VGK LE MGTGE FLN+T Sbjct 946 NWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRT 1005 Query 15023 PKAYALRSKIDKWDLIKLQSFCKAKRTVVRTKQ*PTNWKKIFTNPTTDRGLISKVYKELK 14844 A A+RS+IDKWDL+KLQSFCKAK TV +TK+ PT+W++IFT P +DRGLIS +YKELK Sbjct 1006 AMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIFTYPKSDRGLISNIYKELK 1065 Query 14843 NLDCRETNNPIKN-GVQS*TKNSQLRNA*WLRNT*RNVNIFSQREMQIKATLRFHLAQVR 14667 +D R++NNPIK G + + S ++ + REMQIK TLRFHL VR Sbjct 1066 KVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVR 1125 Query 14666 MAKIKNSGDSTCWRGCGERGTHLHCWWDCRLVQPFWKSVWRFLRKLDIELPEDPAIPLLG 14487 MAKIKNSGDS CWRGCGERGT LHCWW+CRLVQP WKSVWRFLRKLDI LPEDPAIPLLG Sbjct 1126 MAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLG 1185 Query 14486 IYPNDAPTYNKDTCSSMFIAGLFIIARSWK*TRCPSTEEWIQKMWYIYTMEYYSAIKNND 14307 IYP DAPT KDTCS+MFIA LFIIARSWK RCPSTEEWIQKMWYIYTMEYYSAIK N+ Sbjct 1186 IYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNE 1245 Query 14306 FMKFIGKWM*LENIILSEVTQSQK--HTWYAII 14214 FMKF+ KWM LE IILSEVT SQ+ H Y++I Sbjct 1246 FMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLI 1278 Range 6: 427 to 703 Score:429 bits(1102), Expect:0.0, Method:Compositional matrix adjust., Identities:217/277(78%), Positives:237/277(85%), Gaps:0/277(0%) Query 64179 STKHENLKEMDNFLDRNQVPKLNQEQINHLSNPTTPNEIKKVIKGLQTKKSTGPDGFSAE 64000 STK ENL EMD FLDR QVPKLNQ+Q++HL++P +P EI+ VI L TKKS GPDGFSAE Sbjct 427 STKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAE 486 Query 63999 FYQTFIEDLIPILSKLFHKIETDGVLPNSFYEAKIILSAKLHKDPTKKENFRPISLKNID 63820 FYQTF EDLIPIL KLFHKIE +G LPNSFYEA I L K KDPTK ENFRPISL NID Sbjct 487 FYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNID 546 Query 63819 AKILNKILAKQIQEHIKTIIHHDQVGFIPHMQGWFNIWKTINVIHYINKLKEQNHVIISL 63640 AKILNKILA +IQEHIK IIH DQVGFIP MQGWFNI K+INVIHYINKLK++NH+IISL Sbjct 547 AKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISL 606 Query 63639 DAEKAFDKIQHPFMIKVLERIGIQGPYLKIFKDIHNKPVANIKLNGEKREAIPLKSGTSQ 63460 DAEKAFDKIQHPFMIKVLER GIQGPYL + K I++KPVANIK+NGEK EAIPLKSGT Q Sbjct 607 DAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQ 666 Query 63459 VCPLSPYLFNIFLDVLSRATR*QKEMKWKQIGKEEVK 63349 CPLSPYLFNI L+VL+RA R QKE+K QIGKEEVK Sbjct 667 GCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVK 703 Range 7: 699 to 942 Score:393 bits(1010), Expect:0.0, Method:Compositional matrix adjust., Identities:190/244(78%), Positives:209/244(85%), Gaps:0/244(0%) Query 15937 KRRSKISLFADDMIVYLRDPQSSTRELLNLINTFSKVAGYKINSYKSVAFLYTK*NQAEK 15758 K KISL ADDMIVY+ DP++STRELLNLIN+F +V GYKINS KS+AFLYTK QAEK Sbjct 699 KEEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEK 758 Query 15757 EFREKTCFIIVPNNIKYLSVNVNKQVKDLYDKNFKPLKKEIEEDLRRWKDLPCLWIGRIN 15578 E RE T F IV NNIKYL V + K+VKDLYDKNFK LKKEI+EDLRRWKDLPC WIGRIN Sbjct 759 EIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRIN 818 Query 15577 IVKMAILPKAICRFNAIPIKIPIQLFRESYRTICKFIWNNKKPRIAKTILNNKRTSGGIS 15398 IVKMAILPKAI RFNAIPIKIP Q F E ICKF+WNNKKPRIAK++L +KRTSGGI+ Sbjct 819 IVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLLKDKRTSGGIT 878 Query 15397 FPELKQYYRTIVVKTACYWYRDRQIDQWNRIEDPEMNPHTYGHLIFDKGARAIQWKKDSI 15218 P+LK YYR IV+KTA YWYRDRQ+DQWNRIEDPEMNPHTYGHLIFDKGA+ IQWKKDSI Sbjct 879 MPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSI 938 Query 15217 FSKW 15206 F+ W Sbjct 939 FNNW 942 Range 8: 584 to 703 Score:197 bits(501), Expect:0.0, Method:Compositional matrix adjust., Identities:98/120(82%), Positives:110/120(91%), Gaps:0/120(0%) Query 16281 KKPINVIHYINKLKYENHMIISLDAEKAFDKIQHPFIIKVLERIGIQGLYLNIVKALHSK 16102 +K INVIHYINKLK +NHMIISLDAEKAFDKIQHPF+IKVLER GIQG YLN++KA++SK Sbjct 584 RKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSK 643 Query 16101 PVANIKLNGEKLEAIPIKSGIGQGYTLSLFLFSILLEVLVRAIRQQKEIKGIQIGKEEVK 15922 PVANIK+NGEKLEAIP+KSG QG LS +LF+I+LEVL RAIRQQKEIKGIQIGKEEVK Sbjct 644 PVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEVK 703 Range 9: 987 to 1257 Score:362 bits(928), Expect:2e-100, Method:Compositional matrix adjust., Identities:187/271(69%), Positives:212/271(78%), Gaps:0/271(0%) Query 8570 KSGEESQTLGHWRKFHEQKPKPYALRSRFEKWDFIKLQSFCKAKDTVVRKKQQPTDWEKI 8391 K G+ + +G KF + A+RSR +KWD +KLQSFCKAKDTV + K+ PTDWE+I Sbjct 987 KVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERI 1046 Query 8390 FTNPTTDRGLISKIYKELTKVDCRAANNPIKK*GSEVNEEFTAEEC*MAEKHLKKCSTSL 8211 FT P +DRGLIS IYKEL KVD R +NNPIKK GSE+N+EF+ EE MAEKHLKKCSTSL Sbjct 1047 FTYPKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSL 1106 Query 8210 VIREMQIKTTPRFYLTPVRMAKIKNSGDSKCWKGCGERGTLLHCWWDYRMVQQFWKSVWT 8031 +IREMQIKTT RF+LTPVRMAKIKNSGDS+CW+GCGERGTLLHCWW+ R+VQ WKSVW Sbjct 1107 IIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWR 1166 Query 8030 FLRKLDIELPEDPAIPLLCTYPNDAPTYNKDTCSTMfiaaffiiARIWKEPRCPSTEE*Y 7851 FLRKLDI LPEDPAIPLL YP DAPT KDTCSTMFIAA FIIAR WKEPRCPSTEE Sbjct 1167 FLRKLDIVLPEDPAIPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWI 1226 Query 7850 RKCGTSTQWNTIQLSKNNDFMKFIGKWMELE 7758 +K K N+FMKF+ KWM+LE Sbjct 1227 QKMWYIYTMEYYSAIKKNEFMKFLAKWMDLE 1257 Range 10: 680 to 866 Score:236 bits(601), Expect:8e-87, Method:Compositional matrix adjust., Identities:126/187(67%), Positives:149/187(79%), Gaps:6/187(3%) Query 77826 QIIPRAIEKK*GKEDI-VRKEELKISLFADDMTVYLNKPKRSTREILNVVNG-SKVAGYK 77653 +++ RAI ++ + I + KEE+KISL ADDM VY++ PK STRE+LN++N +V GYK Sbjct 680 EVLARAIRQQKEIKGIQIGKEEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYK 739 Query 77652 TNSNK*VAFLYTKEKQAEKEIREMTPFIIVTINIKYLCGTLIKEAKYLYDKNFKSLKK-- 77479 NSNK +AFLYTK KQAEKEIRE TPF IVT NIKYL TL KE K LYDKNFKSLKK Sbjct 740 INSNKSMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEI 799 Query 77478 --DLRRWKDLPCSRIGRIDIVKLAILPKAIYKFSAIPIKIPTQFFIELERETCKFIWNNK 77305 DLRRWKDLPCS IGRI+IVK+AILPKAIY+F+AIPIKIPTQFF ELE CKF+WNNK Sbjct 800 KEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNK 859 Query 77304 KTQGSKN 77284 K + +K+ Sbjct 860 KPRIAKS 866 Range 11: 858 to 941 Score:114 bits(285), Expect:8e-87, Method:Compositional matrix adjust., Identities:55/84(65%), Positives:64/84(76%), Gaps:0/84(0%) Query 77309 TKKPREAKTILNNKRTSGLIIVPDLKMYYRVIVIKSVWFWDRDRLVDQWYRNEESEMNIH 77130 KKPR AK++L +KRTSG I +PDLK+YYR IVIK+ W+W RDR VDQW R E+ EMN H Sbjct 858 NKKPRIAKSLLKDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPH 917 Query 77129 TYSHLIFDIGAKNSQWKKRSHFQH 77058 TY HLIFD GAK QWKK S F + Sbjct 918 TYGHLIFDKGAKTIQWKKDSIFNN 941 Range 12: 1090 to 1170 Score:139 bits(349), Expect:2e-66, Method:Compositional matrix adjust., Identities:62/81(77%), Positives:69/81(85%), Gaps:0/81(0%) Query 76770 EEYGIAEKYLKKC*TSVDIREMQIKTTLRFYLIPVRMDKIKNSGDSRCWRGCGERGILFH 76591 EEY +AEK+LKKC TS+ IREMQIKTTLRF+L PVRM KIKNSGDSRCWRGCGERG L H Sbjct 1090 EEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDSRCWRGCGERGTLLH 1149 Query 76590 CCWD*KLIQSLWKLVWSFLRK 76528 C W+ +L+Q LWK VW FLRK Sbjct 1150 CWWECRLVQPLWKSVWRFLRK 1170 Range 13: 1170 to 1248 Score:115 bits(288), Expect:2e-66, Method:Compositional matrix adjust., Identities:55/79(70%), Positives:60/79(75%), Gaps:0/79(0%) Query 76529 KMDIGLPEESAIPLLSIYPKDVPLYNKDTCSTMVTAAFLIIDRRWKEHRCPLRKEWRQKM 76350 K+DI LPE+ AIPLL IYP+D P KDTCSTM AA II R WKE RCP +EW QKM Sbjct 1170 KLDIVLPEDPAIPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKM 1229 Query 76349 WYSYTMEYYSTIKKNDFMK 76293 WY YTMEYYS IKKN+FMK Sbjct 1230 WYIYTMEYYSAIKKNEFMK 1248 Range 14: 1247 to 1281 Score:40.0 bits(92), Expect:2e-66, Method:Compositional matrix adjust., Identities:19/35(54%), Positives:26/35(74%), Gaps:0/35(0%) Query 76291 IKFLHKWMKV*NIILSVVSQTQKITRGMHSLISGY 76187 +KFL KWM + IILS V+ +Q+ + M+SLISGY Sbjct 1247 MKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISGY 1281 Range 15: 1072 to 1088 Score:29.3 bits(64), Expect:2e-66, Method:Compositional matrix adjust., Identities:13/17(76%), Positives:15/17(88%), Gaps:0/17(0%) Query 76823 SNKPIKKCGTEVNKEFS 76773 SN PIKK G+E+NKEFS Sbjct 1072 SNNPIKKWGSELNKEFS 1088 Range 16: 8 to 97 Score:137 bits(346), Expect:8e-58, Method:Compositional matrix adjust., Identities:67/90(74%), Positives:76/90(84%), Gaps:0/90(0%) Query 18008 ITGSNNHYSLISLNINGLNSTIKRNRLTNWICNEDPAFC*LQETHLRDKNIHYLRVKCWK 17829 I GSNN++SLISLNINGLNS IKR+RLT+W+ +DP FC LQETHLR+K+ HYLRVK WK Sbjct 8 IKGSNNYFSLISLNINGLNSPIKRHRLTDWLHKQDPTFCCLQETHLREKDRHYLRVKGWK 67 Query 17828 TKFQANDLTKQDGVAILISNKIDLQLKVIK 17739 T FQAN L KQ GVAILIS+KID Q KVIK Sbjct 68 TIFQANGLKKQAGVAILISDKIDFQPKVIK 97 Range 17: 97 to 170 Score:115 bits(289), Expect:8e-58, Method:Compositional matrix adjust., Identities:57/74(77%), Positives:63/74(85%), Gaps:0/74(0%) Query 17742 QNDKEGHFIFIKGKIHQDELSILNIYAPNIRAPT*IKGTLLKLKAYIAHHTIIVGDFKSP 17563 + DKEGHFI IKGKI Q+ELSILNIYAPN RA T I+ TL+KLKAYIA HTIIVGDF +P Sbjct 97 KKDKEGHFILIKGKILQEELSILNIYAPNARAATFIRDTLVKLKAYIAPHTIIVGDFNTP 156 Query 17562 LSSMDRSWKQKLTK 17521 LSS DRSWKQKL + Sbjct 157 LSSKDRSWKQKLNR 170 Range 18: 1152 to 1281 Score:205 bits(522), Expect:2e-50, Method:Compositional matrix adjust., Identities:100/133(75%), Positives:110/133(82%), Gaps:3/133(2%) Query 75818 WVCNPLRKIIPFWKSVWRFLRKLDIELPEDPAIRLFGIYPKDAPTYKKYTCSTMSIAALF 75639 W C R + P WKSVWRFLRKLDI LPEDPAI L GIYP+DAPT KK TCSTM IAALF Sbjct 1152 WEC---RLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDAPTGKKDTCSTMFIAALF 1208 Query 75638 IIARSWKKPRCPSPEEWIQKKWYIYTMEYYSAIKNNDFMK*VGKWLELENIILSEVAQSQ 75459 IIARSWK+PRCPS EEWIQK WYIYTMEYYSAIK N+FMK + KW++LE IILSEV SQ Sbjct 1209 IIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQ 1268 Query 75458 KNTHGMHSLISDY 75420 +N+H M+SLIS Y Sbjct 1269 RNSHNMYSLISGY 1281 Range 19: 595 to 690 Score:143 bits(361), Expect:1e-47, Method:Compositional matrix adjust., Identities:65/96(68%), Positives:84/96(87%), Gaps:0/96(0%) Query 78080 QIQRKSHMIISLDAENAFDKIQHPFMLKVLERSETQGPYLNIVKALYNKPVDNIKLNGEK 77901 +++ K+HMIISLDAE AFDKIQHPFM+KVLERS QGPYLN++KA+Y+KPV NIK+NGEK Sbjct 595 KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEK 654 Query 77900 L*IIPLKSGTRQGCPISPFLFNVVLKLYLEQLKKNE 77793 L IPLKSGTRQGCP+SP+LFN+VL++ +++ + Sbjct 655 LEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQK 690 Range 20: 504 to 580 Score:75.9 bits(185), Expect:1e-47, Method:Compositional matrix adjust., Identities:39/77(51%), Positives:49/77(63%), Gaps:7/77(9%) Query 78331 HELTLHRKMFTSLCSSTVILIGL-------FENFRPIPLMNINEKLLNKYLTKQIQEHIK 78173 H++ + + S +T+ LI ENFRPI LMNI+ K+LNK L +IQEHIK Sbjct 504 HKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIK 563 Query 78172 MIIHHDKVGFITGMQGW 78122 IIH D+VGFI GMQGW Sbjct 564 AIIHPDQVGFIPGMQGW 580 Range 21: 1010 to 1234 Score:138 bits(348), Expect:4e-43, Method:Compositional matrix adjust., Identities:107/234(46%), Positives:138/234(58%), Gaps:23/234(9%) Query 11417 ALRSRIDKWELIKLQRFCKAKHMVNRTKWQCKD-----ELSLTILHLILG*YP--KYTNN 11575 A+RSRIDKW+L+KLQ FCKAK VN+TK D + LI Y K + Sbjct 1010 AVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIFTYPKSDRGLISNIYKELKKVDF 1069 Query 11576 SGS*TPENQIILLKWGTELNRDSQFRNLKQPRREAPKIFQHPSSSGKCKSNQP*ESIS-H 11752 S P + KWG+ELN++ + R A K + S+S + Q ++ H Sbjct 1070 RKSNNP-----IKKWGSELNKEFS----PEEYRMAEKHLKKCSTSLIIREMQIKTTLRFH 1120 Query 11753 *SEWLGSKTQMLV-----RMCRKR-THLHFWWDCKLAQPLWKTVWQFLRMlelvlleypa 11914 + +K + R C +R T LH WW+C+L QPLWK+VW+FLR L++VL E PA Sbjct 1121 LTPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPA 1180 Query 11915 vlllGIYTKDALTYNKDICSSMFLAALFILARSWKESRCLSTEEWI*KTWYIYT 12076 + LLGIY +DA T KD CS+MF+AALFI+ARSWKE RC STEEWI K WYIYT Sbjct 1181 IPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYT 1234 Range 22: 1236 to 1281 Score:65.9 bits(159), Expect:4e-43, Method:Compositional matrix adjust., Identities:30/46(65%), Positives:37/46(80%), Gaps:0/46(0%) Query 12079 EYYAVIKNNDFMKFIGKWMELENIILSELTQS*KNTHVMS*LISGY 12216 EYY+ IK N+FMKF+ KWM+LE IILSE+T S +N+H M LISGY Sbjct 1236 EYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISGY 1281 Range 23: 623 to 806 Score:164 bits(415), Expect:6e-38, Method:Compositional matrix adjust., Identities:105/188(56%), Positives:128/188(68%), Gaps:16/188(8%) Query 29039 VLERSGIQGTYLHII*GIYSKSIANIKLNGEKIKAVPL---IRE*IGKAPHYLFNIILVF 28869 VLERSGIQG YL++I IYSK +ANIK+NGEK++A+PL R+ +P YLFNI+L Sbjct 623 VLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSP-YLFNIVLEV 681 Query 28868 LSRAIRQLK-IKGIQLGKEEFKMSSFMDDIIVYISDPKNSITELLQLTYSFNKVTGYIFN 28692 L+RAIRQ K IKGIQ+GKEE K+S DD+IVYISDPKNS ELL L SF +V GY N Sbjct 682 LARAIRQQKEIKGIQIGKEEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKIN 741 Query 28691 SKNS---LYK**TGQERNLGNNTLF----NNHE**KYL-VNLTKKLKGLYDKNFKCLKKE 28536 S S LY E+ + T F NN KYL V LTK++K LYDKNFK LKKE Sbjct 742 SNKSMAFLYTKNKQAEKEIRETTPFSIVTNNI---KYLGVTLTKEVKDLYDKNFKSLKKE 798 Query 28535 IEDNNQRM 28512 I+++ +R Sbjct 799 IKEDLRRW 806 Range 24: 1076 to 1281 Score:134 bits(338), Expect:2e-36, Method:Compositional matrix adjust., Identities:87/214(41%), Positives:113/214(52%), Gaps:36/214(16%) Query 70545 IQK*GIKLNREFKKEETQMPENHLKK*SKSSVIRKMQIKMALRFHSTPIRMAKIKNSGVS 70366 I+K G +LN+EF EE +M E HLKK S S +IR+MQIK LRFH TP+RMAKIKNSG S Sbjct 1076 IKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLTPVRMAKIKNSGDS 1135 Query 70365 TCWQ*CGEKDPSSIDGGIAN--WHNHSGNKLEGSSENWKYIYLKTQHIPRRCATMPQGVS 70192 CW+ CGE+ G + + W L S W+++ +P A G+ Sbjct 1136 RCWRGCGER------GTLLHCWWECRLVQPLWKSV--WRFLRKLDIVLPEDPAIPLLGIY 1187 Query 70191 ------------SPMFIVAFCVTNRSYKQPICPPKEECVRKTWFICTMKYYLPINNNGN- 70051 S MFI A + RS+K+P CP EE ++K W+I TM+YY I N Sbjct 1188 PEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFM 1247 Query 70050 -------------LSEVTQTQKDMHGMYSLIYAY 69988 LSEVT +Q++ H MYSLI Y Sbjct 1248 KFLAKWMDLEGIILSEVTHSQRNSHNMYSLISGY 1281 Range 25: 987 to 1055 Score:47.0 bits(110), Expect:2e-36, Method:Compositional matrix adjust., Identities:32/70(46%), Positives:44/70(62%), Gaps:2/70(2%) Query 70817 KLGKSMELMCTVDYFLNKMATMAQALI*RIDKWDLMKLKSSVR-QGHCH*DKLKYNRLKK 70641 K+GKS+E M T + FLN+ A MA A+ RIDKWDLMKL+S + + + K ++ Sbjct 987 KVGKSLEDMGTGEKFLNRTA-MACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWER 1045 Query 70640 IFSNLTSDRG 70611 IF+ SDRG Sbjct 1046 IFTYPKSDRG 1055 Range 26: 749 to 924 Score:158 bits(400), Expect:3e-36, Method:Compositional matrix adjust., Identities:96/176(55%), Positives:113/176(64%), Gaps:3/176(1%) Query 28681 LYTSDKLAKKEI*EIIHFSITMNNKNIL*I*-PRN*KVYMTRTLSV*KRKLKTIIRGCKY 28505 LYT +K A+KEI E FSI NN L + + K + K+++K +R K Sbjct 749 LYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKD 808 Query 28504 LPRSRISRINIVKMAILPKEIYRLNIIPIKIQT*LFKDLERAILKIHMKK*YTQDSKTFP 28325 LP S I RINIVKMAILPK IYR N IPIKI T F +LE AI K + +K+ Sbjct 809 LPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFVWNNKKPRIAKSLL 868 Query 28324 NNKRTSGGITIPDLKLYYSAIVKK--WYW*RKRQADQ*NQIKDPEMNPHTYGHLIF 28163 +KRTSGGIT+PDLKLYY AIV K WYW R RQ DQ N+I+DPEMNPHTYGHLIF Sbjct 869 KDKRTSGGITMPDLKLYYRAIVIKTAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIF 924 Range 27: 1191 to 1281 Score:154 bits(388), Expect:8e-35, Method:Compositional matrix adjust., Identities:71/91(78%), Positives:81/91(89%), Gaps:0/91(0%) Query 32673 APTYNKDTCSTMFIAALFIIARS*KEPRCPSTEEWIQKMWYIYTMEYYSAIKNNDFMKFI 32852 APT KDTCSTMFIAALFIIARS KEPRCPSTEEWIQKMWYIYTMEYYSAIK N+FMKF+ Sbjct 1191 APTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIKKNEFMKFL 1250 Query 32853 GKWMELENIIRNDVTQSQKDTHGMHSMISEY 32945 KWM+LE II ++VT SQ+++H M+S+IS Y Sbjct 1251 AKWMDLEGIILSEVTHSQRNSHNMYSLISGY 1281 Range 28: 1063 to 1262 Score:152 bits(385), Expect:2e-34, Method:Compositional matrix adjust., Identities:89/200(45%), Positives:119/200(59%), Gaps:8/200(4%) Query 11166 ELKKLD---THNAILKWGTEEKRGNS-----IV*RTLKEMFKVLSHQENANQTILRFDLT 11011 ELKK+D ++N I KWG+E + S + + LK+ L +E +T LRF LT Sbjct 1063 ELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHLT 1122 Query 11010 YVRMAKIKNSDGSTYS*GCRAQGTLLQCW*ECKLLQTLGKSI*CFHRKLGMAIPQDPDIS 10831 VRMAKIKNS S GC +GTLL CW EC+L+Q L KS+ F RKL + +P+DP I Sbjct 1123 PVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIP 1182 Query 10830 LPGHISKRCSTIPQRQLINYVIAALFVVVRN*KQSKCPSTEEWLMKVWYVYTTVYFHL*K 10651 L G + T + IAALF++ R+ K+ +CPSTEEW+ K+WY+YT Y+ K Sbjct 1183 LLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIK 1242 Query 10650 NKSFLNFTGKWMDLKNFILS 10591 F+ F KWMDL+ ILS Sbjct 1243 KNEFMKFLAKWMDLEGIILS 1262 Range 29: 1183 to 1281 Score:152 bits(383), Expect:4e-34, Method:Compositional matrix adjust., Identities:71/99(72%), Positives:82/99(82%), Gaps:4/99(4%) Query 69590 LMGIYRKDAPIYSKDTCSTMIIAALFIISREWKQPKCPSTEKWIQKMWYIYTMEYYTAIK 69411 L+GIY +DAP KDTCSTM IAALFII+R WK+P+CPSTE+WIQKMWYIYTMEYY+AIK Sbjct 1183 LLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYTMEYYSAIK 1242 Query 69410 KNEFMKF----TELENIILGELTQSQKNTQGMYSLTSGY 69306 KNEFMKF +LE IIL E+T SQ+N+ MYSL SGY Sbjct 1243 KNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISGY 1281 Range 30: 934 to 1132 Score:148 bits(373), Expect:6e-33, Method:Compositional matrix adjust., Identities:98/204(48%), Positives:130/204(63%), Gaps:12/204(5%) Query 11191 KNDSIFNKC*RFNWWSACRRMQIDLFLSPCTKLKSKWIKDLHIKPDMINLIEEKVGKNLK 11370 K DSIFN NW +CRRM+ID +LSPCTK+KSKWIK+LHIKP+ + LIEEKVGK+L+ Sbjct 934 KKDSIFNNWCWHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIKPETLKLIEEKVGKSLE 993 Query 11371 HIGTGKISCIEHQWLCSKIKN*QVGTHKIAKIL*G-KAHGQ*NKMAM-----QR*VVFNN 11532 +GTG+ + + +++ ++ + K+ KA NK +R +F Sbjct 994 DMGTGE-KFLNRTAMACAVRS-RIDKWDLMKLQSFCKAKDTVNKTKRPPTDWER--IFTY 1049 Query 11533 PTSDTGLISKIYK*LRKLDSREPNNPTKM-GHRAKQRFSVQESQTAKKRST*NFSTSFVI 11709 P SD GLIS IYK L+K+D R+ NNP K G + FS +E + A+K STS +I Sbjct 1050 PKSDRGLISNIYKELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLK-KCSTSLII 1108 Query 11710 REMQIKSTLRIHLTLVRMARIKNS 11781 REMQIK+TLR HLT VRMA+IKNS Sbjct 1109 REMQIKTTLRFHLTPVRMAKIKNS 1132 Range 31: 418 to 487 Score:124 bits(310), Expect:1e-25, Method:Compositional matrix adjust., Identities:56/70(80%), Positives:62/70(88%), Gaps:0/70(0%) Query 16781 IRSYYKSLYSTKLENLQEMDNFLDRYQVPKLNQE*INHLNNPITPNEIEAVIKGLPTKKS 16602 IRS+YK LYSTKLENL EMD FLDRYQVPKLNQ+ ++HLN+PI+P EIEAVI LPTKKS Sbjct 418 IRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKS 477 Query 16601 PGPDGFSAEI 16572 PGPDGFSAE Sbjct 478 PGPDGFSAEF 487 Range 32: 1174 to 1274 Score:124 bits(310), Expect:1e-25, Method:Compositional matrix adjust., Identities:62/101(61%), Positives:75/101(74%), Gaps:1/101(0%) Query 61944 LLPEDTAIPLWHI-PKKCPNI*QRHMLHYVHSSLFIIARIWKEHRCPSTEE*IQKMWYIY 61768 +LPED AIPL I P+ P + ++LFIIAR WKE RCPSTEE IQKMWYIY Sbjct 1174 VLPEDPAIPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIY 1233 Query 61767 TMEYYSAIKNSDFMKFIGKWMELENILLSEVTQSHKNTHGL 61645 TMEYYSAIK ++FMKF+ KWM+LE I+LSEVT S +N+H + Sbjct 1234 TMEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNM 1274 Range 33: 535 to 707 Score:111 bits(277), Expect:9e-22, Method:Compositional matrix adjust., Identities:79/185(43%), Positives:104/185(56%), Gaps:25/185(13%) Query 54373 ENFRPISLMNID*QIHNKFLQSKSKNTLK*SSIMIK*LHPKGAGIV*YTE---------- 54224 ENFRPISLMNID +I NK L ++ + +K +I +HP G + + Sbjct 535 ENFRPISLMNIDAKILNKILANRIQEHIK--AI----IHPDQVGFIPGMQGWFNIRKSIN 588 Query 54223 -IHQCNPLYKQTQR*EPHHHFIT--CRKSI*QNSTPLHDKSPGKIRNSRPKLSIVKAKHS 54053 IH N L + +H I+ K+ + P K + P L+++KA +S Sbjct 589 VIHYINKLK------DKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYS 642 Query 54052 KTVGNTKINEE*YEAIPLKSGTT*DCPLSPYLFNVVCKVLAIAIRQRKEVKVIQIGREEV 53873 K V N K+N E EAIPLKSGT CPLSPYLFN+V +VLA AIRQ+KE+K IQIG+EEV Sbjct 643 KPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGKEEV 702 Query 53872 KYDYL 53858 K L Sbjct 703 KISLL 707 Range 34: 1062 to 1281 Score:110 bits(274), Expect:2e-21, Method:Compositional matrix adjust., Identities:74/227(33%), Positives:113/227(49%), Gaps:15/227(6%) Query 44261 REINSLKRSRMQEIMKK*GIKLNREFTKEESRIPENHLKK*SKSSVIRKMQIKMTP*FHL 44082 +E+ + + +KK G +LN+EF+ EE R+ E HLKK S S +IR+MQIK T FHL Sbjct 1062 KELKKVDFRKSNNPIKKWGSELNKEFSPEEYRMAEKHLKKCSTSLIIREMQIKTTLRFHL 1121 Query 44081 SPSKWLRSKIHITAHVGKVVEKRNLP-------QLLVGLQTGATTLEISLQVPQKIGNIY 43923 +P + + K + + +R +L+ L L +I Sbjct 1122 TPVRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKL-------DIV 1174 Query 43922 IPEDP-LYLSWAYTQKMPHHATGVCVPLVHSGFICNSQKL*QPTCPTMEEWIGKT*FICI 43746 +PEDP + L Y + P C + + ++ +P CP+ EEWI K +I Sbjct 1175 LPEDPAIPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKMWYIYT 1234 Query 43745 RKYYLSIDNKDILSFASRWMELENVILSEVTLTQSGMHGMYSLICAY 43605 +YY +I + + F ++WM+LE +ILSEVT +Q H MYSLI Y Sbjct 1235 MEYYSAIKKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLISGY 1281 Range 35: 911 to 1014 Score:93.2 bits(230), Expect:3e-16, Method:Compositional matrix adjust., Identities:48/104(46%), Positives:64/104(61%), Gaps:0/104(0%) Query 72701 DVQIKRHTYAHLIFDKETKNIQRKKESIFIKWCHSIWMSVCKKLQIGPYLSRCTKLKCKC 72522 D ++ HTY HLIFDK K IQ KK+SIF WC W+ C++++I PYLS CTK+K K Sbjct 911 DPEMNPHTYGHLIFDKGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYLSPCTKVKSKW 970 Query 72521 FEDLNIKPDTLNLIEHKEGKGP*THWHRQKFPNENSDGSCTKFR 72390 ++L+IKP+TL LIE K GK +KF N + + R Sbjct 971 IKELHIKPETLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSR 1014 Range 36: 1179 to 1229 Score:75.5 bits(184), Expect:2e-15, Method:Compositional matrix adjust., Identities:33/51(65%), Positives:42/51(82%), Gaps:0/51(0%) Query 43227 PSYTLLDIHLKDAPTYNKDICSTMFISALFLIAKEWKQTKCPSTEKWIQKM 43075 P+ LL I+ +DAPT KD CSTMFI+ALF+IA+ WK+ +CPSTE+WIQKM Sbjct 1179 PAIPLLGIYPEDAPTGKKDTCSTMFIAALFIIARSWKEPRCPSTEEWIQKM 1229 Range 37: 1259 to 1279 Score:35.8 bits(81), Expect:2e-15, Method:Compositional matrix adjust., Identities:15/21(71%), Positives:18/21(85%), Gaps:0/21(0%) Query 43006 VILSEVTQSQKNTHGMYSLIC 42944 +ILSEVT SQ+N+H MYSLI Sbjct 1259 IILSEVTHSQRNSHNMYSLIS 1279 Range 38: 1022 to 1077 Score:68.6 bits(166), Expect:3e-15, Method:Compositional matrix adjust., Identities:35/56(63%), Positives:39/56(69%), Gaps:0/56(0%) Query 52918 KTAKLCKEKDTGIRTKRQSTDWEKIFINPPSNGGLISKIYKELKKLDSR*PNNPIK 52751 K CK KDT +TKR TDWE+IF P S+ GLIS IYKELKK+D R NNPIK Sbjct 1022 KLQSFCKAKDTVNKTKRPPTDWERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIK 1077 Range 39: 1075 to 1101 Score:42.4 bits(98), Expect:3e-15, Method:Compositional matrix adjust., Identities:19/27(70%), Positives:21/27(77%), Gaps:0/27(0%) Query 52760 PY*KWGTELNNEF*AEEYRMAVKHVKK 52680 P KWG+ELN EF EEYRMA KH+KK Sbjct 1075 PIKKWGSELNKEFSPEEYRMAEKHLKK 1101 Range 40: 926 to 977 Score:55.5 bits(132), Expect:4e-14, Method:Compositional matrix adjust., Identities:29/52(56%), Positives:35/52(67%), Gaps:0/52(0%) Query 13465 KDAKSLQWQK*MIFNK*C*SN*KTICRRKKIDPYSSPCTKFKSK*IKDFKLK 13310 K AK++QW+K IFN C N CRR +IDPY SPCTK KSK IK+ +K Sbjct 926 KGAKTIQWKKDSIFNNWCWHNWLLSCRRMRIDPYLSPCTKVKSKWIKELHIK 977 Range 41: 1013 to 1049 Score:51.6 bits(122), Expect:4e-14, Method:Compositional matrix adjust., Identities:24/37(65%), Positives:29/37(78%), Gaps:0/37(0%) Query 13200 STIDKWALVKLKGFCKSKDIVNRAKWQPTDYERI*TY 13090 S IDKW L+KL+ FCK+KD VN+ K PTD+ERI TY Sbjct 1013 SRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIFTY 1049 Range 42: 884 to 956 Score:84.7 bits(208), Expect:1e-13, Method:Compositional matrix adjust., Identities:40/77(52%), Positives:49/77(63%), Gaps:4/77(5%) Query 70909 LFFSAFFVKDQVSVSLYWYRDRNTGQRNRIQDPEIKLQTYRHLIFDKEDKKIQWKTDNSF 71088 L++ A +K + YWYRDR Q NRI+DPE+ TY HLIFDK K IQWK D+ F Sbjct 884 LYYRAIVIK----TAWYWYRDRQVDQWNRIEDPEMNPHTYGHLIFDKGAKTIQWKKDSIF 939 Query 71089 KN*CWSNWQTVCRKMKI 71139 N CW NW CR+M+I Sbjct 940 NNWCWHNWLLSCRRMRI 956 Range 43: 987 to 1045 Score:78.6 bits(192), Expect:9e-12, Method:Compositional matrix adjust., Identities:39/59(66%), Positives:43/59(72%), Gaps:0/59(0%) Query 72472 KRGKGLELIGTGRNFLTRTPMAHALNSGIDKWDLMKLESFCKASDIVNKTN*YPTGWEK 72296 K GK LE +GTG FL RT MA A+ S IDKWDLMKL+SFCKA D VNKT PT WE+ Sbjct 987 KVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWER 1045 Range 44: 980 to 1043 Score:64.3 bits(155), Expect:3e-11, Method:Compositional matrix adjust., Identities:37/64(58%), Positives:41/64(64%), Gaps:3/64(4%) Query 35561 TLNLIEEKVRKVLELTGIGGIFLN*TPMTYTLRSRI---DLTKQESFCKAKDIVNRENQK 35731 TL LIEEKV K LE G G FLN T M +RSRI DL K +SFCKAKD VN+ + Sbjct 980 TLKLIEEKVGKSLEDMGTGEKFLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRP 1039 Query 35732 PTAW 35743 PT W Sbjct 1040 PTDW 1043 Range 45: 1044 to 1078 Score:32.3 bits(72), Expect:3e-11, Method:Compositional matrix adjust., Identities:18/35(51%), Positives:22/35(62%), Gaps:0/35(0%) Query 35745 ERNFTNLTSDRGLIYKIYKEFKKLTTKEPKKPNQK 35849 ER FT SDRGLI IYKE KK+ ++ P +K Sbjct 1044 ERIFTYPKSDRGLISNIYKELKKVDFRKSNNPIKK 1078 Range 46: 1135 to 1220 Score:73.6 bits(179), Expect:2e-10, Method:Compositional matrix adjust., Identities:39/86(45%), Positives:50/86(58%), Gaps:4/86(4%) Query 44032 ARLWR----KGTFLNCWWDCKLVQPLWKSVCRFLRKLEIYIYLKTHYTSPGHIPRKCPTM 43865 +R WR +GT L+CWW+C+LVQPLWKSV RFLRKL+I + G P PT Sbjct 1135 SRCWRGCGERGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPAIPLLGIYPEDAPTG 1194 Query 43864 LQEYVFHLFIVALFVTVRSCNNPHVP 43787 ++ +FI ALF+ RS P P Sbjct 1195 KKDTCSTMFIAALFIIARSWKEPRCP 1220 Range 47: 1144 to 1180 Score:58.5 bits(140), Expect:1e-05, Method:Compositional matrix adjust., Identities:25/37(68%), Positives:30/37(81%), Gaps:0/37(0%) Query 70342 KGSFLH*WWDCKLAQPLWK*T*RFLRKLEIYLPEDPA 70232 +G+ LH WW+C+L QPLWK RFLRKL+I LPEDPA Sbjct 1144 RGTLLHCWWECRLVQPLWKSVWRFLRKLDIVLPEDPA 1180 Range 48: 1001 to 1080 Score:57.4 bits(137), Expect:2e-05, Method:Compositional matrix adjust., Identities:35/81(43%), Positives:50/81(61%), Gaps:2/81(2%) Query 55163 FLN*TPIAHTLRSRIDKRDLAKFESFCKAKDIVNREYQQPTD*GKLFH*LDL**RANIQN 55342 FLN T +A +RSRIDK DL K +SFCKAKD VN+ + PTD ++F R I N Sbjct 1001 FLNRTAMACAVRSRIDKWDLMKLQSFCKAKDTVNKTKRPPTDWERIFT-YPKSDRGLISN 1059 Query 55343 L*R-TQKANHQRTKQPNEKWG 55402 + + +K + +++ P +KWG Sbjct 1060 IYKELKKVDFRKSNNPIKKWG 1080 Range 49: 1124 to 1160 Score:57.0 bits(136), Expect:3e-05, Method:Compositional matrix adjust., Identities:25/37(68%), Positives:29/37(78%), Gaps:0/37(0%) Query 6969 IKMEKKKNFSDSRCW*GCGER*TLLHCWWDSRLVQEV 6859 ++M K KN DSRCW GCGER TLLHCWW+ RLVQ + Sbjct 1124 VRMAKIKNSGDSRCWRGCGERGTLLHCWWECRLVQPL 1160 Range 50: 1125 to 1201 Score:50.8 bits(120), Expect:0.002, Method:Compositional matrix adjust., Identities:34/84(40%), Positives:44/84(52%), Gaps:14/84(16%) Query 44073 KMAKIKNSHYSTCWQGCGEKEPSSTAGGIAN-WCNHSGNQFAGSSENWKY------IYT* 43915 +MAKIKNS S CW+GCGE+ G + + W Q S W++ + Sbjct 1125 RMAKIKNSGDSRCWRGCGER------GTLLHCWWECRLVQPLWKSV-WRFLRKLDIVLPE 1177 Query 43914 RPTIPLLGIYPENAPPCYRSMCST 43843 P IPLLGIYPE+AP + CST Sbjct 1178 DPAIPLLGIYPEDAPTGKKDTCST 1201 Range 51: 1242 to 1279 Score:50.1 bits(118), Expect:0.003, Method:Compositional matrix adjust., Identities:22/38(58%), Positives:30/38(78%), Gaps:0/38(0%) Query 52163 KNNDFMQFIGKWNELENIILSKVTQSQKNTHGGHPLIS 52050 K N+FM+F+ KW +LE IILS+VT SQ+N+H + LIS Sbjct 1242 KKNEFMKFLAKWMDLEGIILSEVTHSQRNSHNMYSLIS 1279 >RecName: Full=LINE-1 retrotransposable element ORF2 protein; Short=ORF2p; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease [Homo sapiens] Sequence ID: O00370.1 Length: 1275 Range 1: 698 to 1166 Score:484 bits(1246), Expect:0.0, Method:Compositional matrix adjust., Identities:233/469(50%), Positives:327/469(69%), Gaps:1/469(0%) Query 63346 SLFSHDRIVYLSDPKNSTRELLNLINTYSKVAGNKINSNKSVAFLYTKEKQAEKEIREMT 63167 SLF+ D IVYL +P S + LL LI+ +SKV+G KIN KS AFLY +Q E +I Sbjct 698 SLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGEL 757 Query 63166 PFIIVPNNIKYLGVTLTKQVKYLYDKNFKPLKKEIEEDLRRWKDLPCLWIGKINIEKWPL 62987 PF I IKYLG+ LT+ VK L+ +N+KPL KEI+ED +WK++PC W+G+INI K + Sbjct 758 PFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAI 817 Query 62986 YKRDL-QIQCNPHQNTKPIPQRVIQKNFQIHLDNKKLRIAKTILNNKKTSWGTTIPELKQ 62810 + + + P + + + + + K+ RIAK+IL+ K + G T+P+ K Sbjct 818 LPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKL 877 Query 62809 YYRAIVIKTAWY*YRDRQIDQWNRIEDPEMNPHTYGHLIFDKGPKTIPWEKDSIFSKWCW 62630 YY+A V KTAWY Y++R IDQWNR E E+ PH Y +LIFDK K W KDS+ +KWCW Sbjct 878 YYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLLNKWCW 937 Query 62629 FNWRSACRRMQVDPCLSPYT*LKSQWIKELHIKPYTLKLIEEKVGKHLEHMGTGENFRNK 62450 NW + CR++++DP L+PYT + S+WIK+L++KP T+K +EE +G ++ +G G++F +K Sbjct 938 ENWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIKTLEENLGITIQDIGVGKDFMSK 997 Query 62449 TPMTYPLRSRINKWDLIKLQSFCKAKGTVVRTKQEPTDCAKIFTNRTTERGLISKIYKEL 62270 TP + +I+KWDLIKL+SFC AK T +R ++PT KIF ++++GLIS+IY EL Sbjct 998 TPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNEL 1057 Query 62269 KKFNCRETNNPIKKCGSELNKDFTA*KCRMAEKHLKKCSTSLVIREMQIKTTLRFHLTPV 62090 K+ ++TNNPIKK ++N+ F+ A+KH+KKCS+SL IREMQIKTT+R+HLTPV Sbjct 1058 KQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPV 1117 Query 62089 RMAKIKTSGDSKCRQGCGERGTVLHFWWDCRLVQPFWKSVWRFPRKLDI 61943 RMA IK SG+++C +GCGE GT++H WWDC+LVQP WKSVWRF R L++ Sbjct 1118 RMAIIKKSGNNRCWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFLRDLEL 1166 Range 2: 939 to 1272 Score:375 bits(962), Expect:0.0, Method:Compositional matrix adjust., Identities:177/334(53%), Positives:246/334(73%), Gaps:4/334(1%) Query 15203 NWRSACRRMQINPCLSPCTKHKSKWIKDIHIKPDTLKLIEENVGKHLEHMGTGE*FLNKT 15024 NW + CR+++++P L+P TK S+WIKD+++KP T+K +EEN+G ++ +G G+ F++KT Sbjct 939 NWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIKTLEENLGITIQDIGVGKDFMSKT 998 Query 15023 PKAYALRSKIDKWDLIKLQSFCKAKRTVVRTKQ*PTNWKKIFTNPTTDRGLISKVYKELK 14844 PKA A + KIDKWDLIKL+SFC AK T +R + PT W+KIF ++D+GLIS++Y ELK Sbjct 999 PKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELK 1058 Query 14843 NLDCRETNNPIKNGVQS*TKNSQLRNA*WLRNT*RNV-NIFSQREMQIKATLRFHLAQVR 14667 + ++TNNPIK + ++ + + + + + REMQIK T+R+HL VR Sbjct 1059 QIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVR 1118 Query 14666 MAKIKNSGDSTCWRGCGERGTHLHCWWDCRLVQPFWKSVWRFLRKLDIELPEDPAIPLLG 14487 MA IK SG++ CWRGCGE GT +HCWWDC+LVQP WKSVWRFLR L++E+P DPAIPLLG Sbjct 1119 MAIIKKSGNNRCWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLG 1178 Query 14486 IYPNDAPT-YNKDTCSSMFIAGLFIIARSWK*TRCPSTEEWIQKMWYIYTMEYYSAIKNN 14310 IYP D + KDTC+ MFIA LF IA++W CP+ +WI+KMW+IYTMEYY+AIKN+ Sbjct 1179 IYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAIKND 1238 Query 14309 DFMKFIGKWM*LENIILSEVTQSQ--KHTWYAII 14214 +F+ F+G WM LE IILS+++Q Q KH +++I Sbjct 1239 EFISFVGTWMKLETIILSKLSQEQKTKHRIFSLI 1272 Range 3: 420 to 700 Score:371 bits(953), Expect:0.0, Method:Compositional matrix adjust., Identities:184/281(65%), Positives:222/281(79%), Gaps:0/281(0%) Query 64179 STKHENLKEMDNFLDRNQVPKLNQEQINHLSNPTTPNEIKKVIKGLQTKKSTGPDGFSAE 64000 + K ENL+EMD FLD +P+LNQE++ L+ P T +EI +I L TKKS GPDGF+AE Sbjct 420 ANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAE 479 Query 63999 FYQTFIEDLIPILSKLFHKIETDGVLPNSFYEAKIILSAKLHKDPTKKENFRPISLKNID 63820 FYQ + E+L+P L KLF IE +G+LPNSFYEA IIL K +D TKKENFRPISL NID Sbjct 480 FYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNID 539 Query 63819 AKILNKILAKQIQEHIKTIIHHDQVGFIPHMQGWFNIWKTINVIHYINKLKEQNHVIISL 63640 AKILNKILA +IQ+HIK +IHHDQVGFIP MQGWFNI K+INVI +IN+ K++NHVIIS+ Sbjct 540 AKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISI 599 Query 63639 DAEKAFDKIQHPFMIKVLERIGIQGPYLKIFKDIHNKPVANIKLNGEKREAIPLKSGTSQ 63460 DAEKAFDKIQ PFM+K L ++GI G YLKI + I++KP ANI LNG+K EA PLK+GT Q Sbjct 600 DAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQ 659 Query 63459 VCPLSPYLFNIFLDVLSRATR*QKEMKWKQIGKEEVKNHYF 63337 CPLSP LFNI L+VL+RA R +KE+K Q+GKEEVK F Sbjct 660 GCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLF 700 Range 4: 146 to 579 Score:352 bits(904), Expect:0.0, Method:Compositional matrix adjust., Identities:202/437(46%), Positives:271/437(62%), Gaps:6/437(1%) Query 17575 FQKPTLINGQIMETEINKDIHRLREVMNQIDLTDTYRIFYTKEKGYMFYSPPHITFSKID 17396 F P I + ++NKD L ++Q DL D YR + K Y F+S PH T+SKID Sbjct 146 FNTPLSILDRSTRQKVNKDTQELNSALHQTDLIDIYRTLHPKSTEYTFFSAPHHTYSKID 205 Query 17395 HIIGDKTGLNR*RKIEIIPCILSDHHGLN---QVFNNKRGRMPTYTWKLNNALLNDNLVK 17225 HI+G K L++ ++ EII LSDH + ++ N + R + TWKLNN LLND V Sbjct 206 HIVGSKALLSKCKRTEIITNYLSDHSAIKLELRIKNLTQSR--STTWKLNNLLLNDYWVH 263 Query 17224 KEIKK*IKDFLELNKNEGKTSPNLWDTMKAVLRGKHIGLSARRKKQEKAYVSSLTAHLKA 17045 E+K IK F E N+N+ T NLWD KAV RGK I L+A ++KQE++ + +LT+ LK Sbjct 264 NEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAYKRKQERSKIDTLTSQLKE 323 Query 17044 LEQKEANTPRRNRRQEIIKLRAEINQVETKRTIG*INRTKSWFSEKINKKDKPLARLMRG 16865 LE++E + +RRQEI K+RAE+ ++ET++T+ IN ++SWF E+INK D+PLARL++ Sbjct 324 LEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKK 383 Query 16864 HIECVQINKIRNEKGDIAIESEEIQKKSSDPTTKAYIPQNLKICRKWTIS*TGTRYRS*I 16685 E QI+ I+N+KGDI + EIQ + Y + + T T T R Sbjct 384 KREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQ 443 Query 16684 RNR*TI*TTP*LLTK*KQSLKVSQPKRVQAQTGLVQRSNQTFIEDLIPILSKLFHKIETD 16505 ++ P ++ + K+ G Q + E+L+P L KLF IE + Sbjct 444 EEVESL-NRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKE 502 Query 16504 GALPNSFYEATITLIPKPHKDPTKKENFRPISPMNIDAKILNKILANRIQEHIKTIIHHD 16325 G LPNSFYEA+I LIPKP +D TKKENFRPIS MNIDAKILNKILANRIQ+HIK +IHHD Sbjct 503 GILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHD 562 Query 16324 QVGFIPDMQGWFNIQKA 16274 QVGFIP MQGWFNI+K+ Sbjct 563 QVGFIPGMQGWFNIRKS 579 Range 5: 1 to 402 Score:351 bits(900), Expect:0.0, Method:Compositional matrix adjust., Identities:190/402(47%), Positives:281/402(69%), Gaps:6/402(1%) Query 65417 ITGSTNHYSLISLNINGLNSPIKRHRLTNWIRNEDPAFCCLQ*THLSGKERHYLRVKGWK 65238 +TGS +H ++++LN+NGLNSPIKRHRL +WI+++DP+ CC+Q THL+ ++ H L++KGW+ Sbjct 1 MTGSNSHITILTLNVNGLNSPIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWR 60 Query 65237 KTFQANGLKKQAGIDILISNKINFQLKVIKQDkkghfifikgkiHQDELAILNVSATNTR 65058 K +QANG +K+AG+ IL+S+K +F+ IK+DK+GH+I +KG I Q+EL ILN+ A NT Sbjct 61 KIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTG 120 Query 65057 APTYIKETLLELKAHIAPHTIIVGDFNTPLSSMDR*WKQKLNRDIDRLREIMNQMDLTDI 64878 AP +IK+ L +L+ + HT+I+GDFNTPLS +DR +QK+N+D L ++Q DL DI Sbjct 121 APRFIKQVLSDLQRDLDSHTLIMGDFNTPLSILDRSTRQKVNKDTQELNSALHQTDLIDI 180 Query 64877 YRTFYPTTKGYTLFSPPHGTFSKIDHIISHKTGLNRYRKIKIITCVLSHHHGLKL---VF 64707 YRT +P + YT FS PH T+SKIDHI+ K L++ ++ +IIT LS H +KL + Sbjct 181 YRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIITNYLSDHSAIKLELRIK 240 Query 64706 NNNKRRMEVEQCSSQ**PGQRRNKERN**TSEF---NENEGTTYTNL*DTMEDVLRRTLI 64536 N + R + ++ + E F NEN+ TTY NL D + V R I Sbjct 241 NLTQSRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFI 300 Query 64535 DLSACRKKQERVYISSLAAQLKALEQKEGNTPRRSRRQKIIKLRAEINQVETKRTIQRIN 64356 L+A ++KQER I +L +QLK LE++E + SRRQ+I K+RAE+ ++ET++T+Q+IN Sbjct 301 ALNAYKRKQERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKIN 360 Query 64355 RTKSWFSEKINKIQKPLARLMRGHRDCVQINKIRNEKGDITT 64230 ++SWF E+INKI +PLARL++ R+ QI+ I+N+KGDITT Sbjct 361 ESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITT 402 Range 6: 692 to 935 Score:284 bits(726), Expect:0.0, Method:Compositional matrix adjust., Identities:137/244(56%), Positives:172/244(70%), Gaps:0/244(0%) Query 15937 KRRSKISLFADDMIVYLRDPQSSTRELLNLINTFSKVAGYKINSYKSVAFLYTK*NQAEK 15758 K K+SLFADDMIVYL +P S + LL LI+ FSKV+GYKIN KS AFLY Q E Sbjct 692 KEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTES 751 Query 15757 EFREKTCFIIVPNNIKYLSVNVNKQVKDLYDKNFKPLKKEIEEDLRRWKDLPCLWIGRIN 15578 + + F I IKYL + + + VKDL+ +N+KPL KEI+ED +WK++PC W+GRIN Sbjct 752 QIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRIN 811 Query 15577 IVKMAILPKAICRFNAIPIKIPIQLFRESYRTICKFIWNNKKPRIAKTILNNKRTSGGIS 15398 IVKMAILPK I RFNAIPIK+P+ F E +T KFIWN K+ RIAK+IL+ K +GGI+ Sbjct 812 IVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGIT 871 Query 15397 FPELKQYYRTIVVKTACYWYRDRQIDQWNRIEDPEMNPHTYGHLIFDKGARAIQWKKDSI 15218 P+ K YY+ V KTA YWY++R IDQWNR E E+ PH Y +LIFDK + QW KDS+ Sbjct 872 LPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSL 931 Query 15217 FSKW 15206 +KW Sbjct 932 LNKW 935 Range 7: 577 to 696 Score:164 bits(416), Expect:0.0, Method:Compositional matrix adjust., Identities:78/120(65%), Positives:100/120(83%), Gaps:0/120(0%) Query 16281 KKPINVIHYINKLKYENHMIISLDAEKAFDKIQHPFIIKVLERIGIQGLYLNIVKALHSK 16102 +K INVI +IN+ K +NH+IIS+DAEKAFDKIQ PF++K L ++GI G+YL I++A++ K Sbjct 577 RKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDK 636 Query 16101 PVANIKLNGEKLEAIPIKSGIGQGYTLSLFLFSILLEVLVRAIRQQKEIKGIQIGKEEVK 15922 P ANI LNG+KLEA P+K+G QG LS LF+I+LEVL RAIRQ+KEIKGIQ+GKEEVK Sbjct 637 PTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVK 696 Range 8: 716 to 1240 Score:439 bits(1130), Expect:5e-143, Method:Compositional matrix adjust., Identities:239/526(45%), Positives:336/526(63%), Gaps:5/526(0%) Query 53814 QRTINQLKKFNKMSRDKINSNK*VAFFYSKDKQAEKEIREMAPFMIVSNK*IKYLDMTLT 53635 Q + + F+K+S KIN K AF Y+ ++Q E +I PF I S + IKYL + LT Sbjct 716 QNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKR-IKYLGIQLT 774 Query 53634 KQVKDLYDKNFKSLKKEIKEYLRRRTDLSCSWIGRIDLVKMAILPKAINRFNAIPIKFPT 53455 + VKDL+ +N+K L KEIKE + ++ CSW+GRI++VKMAILPK I RFNAIPIK P Sbjct 775 RDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPM 834 Query 53454 *FFIEIERTICKFLWNKKRNRIEKNILNNKRTSGGVTIPNLKQYYRAIVIKTVIGTETGR 53275 FF E+E+T KF+WN+KR RI K+IL+ K +GG+T+P+ K YY+A V KT R Sbjct 835 TFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNR 894 Query 53274 -LYQWNRTEYPEINPQTHGHMIFVKGAKIIQWKKDSIFKQWC*FNWRSACRRMWIDPFLS 53098 + QWNRTE EI P + ++IF K K QW KDS+ +WC NW + CR++ +DPFL+ Sbjct 895 DIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLLNKWCWENWLAICRKLKLDPFLT 954 Query 53097 PCTKHKFKWINNLHIKPDTLKLIEEKVRKMLEHIGIGENFMNKTPTAYALRTRIDK*DLK 52918 P TK +WI +L++KP T+K +EE + ++ IG+G++FM+KTP A A + +IDK DL Sbjct 955 PYTKINSRWIKDLNVKPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKDKIDKWDLI 1014 Query 52917 KLQSYVRKKTPALGQNGNQQIGKRSLSILHLMEG*YPK-YTKNSRS*TPDSQITLLKVGY 52741 KL+S+ K + N ++ + +G + Y + + + + K Sbjct 1015 KLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAK 1074 Query 52740 RVKQRILS*GISNGCEACKEI-TSLVIGEMQIKTTLRFHLIPVRMNKIKISGDSRCLQGC 52564 + + I + K+ +SL I EMQIKTT+R+HL PVRM IK SG++RC +GC Sbjct 1075 DMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGC 1134 Query 52563 GERETLVHCW*D*KLVELFWKSVWMFLRKLDIPLPEDPVIPLLGIYPNGTPT-YNKETCS 52387 GE TLVHCW D KLV+ WKSVW FLR L++ +P DP IPLLGIYP + K+TC+ Sbjct 1135 GEIGTLVHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCYKDTCT 1194 Query 52386 YMFIAA*FPISRRWKEPRCPSTEEWIQKMWYIYTKEYY*SIKNNDW 52249 MFIAA F I++ W +P CP+ +WI+KMW+IYT EYY +IKN+++ Sbjct 1195 RMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAIKNDEF 1240 Range 9: 528 to 696 Score:98.2 bits(243), Expect:5e-143, Method:Compositional matrix adjust., Identities:67/175(38%), Positives:95/175(54%), Gaps:13/175(7%) Query 54373 ENFRPISLMNID*QIHNKFLQSKSKNTLK*SSIMIK*LHPKGAGIV*----YTEIHQCNP 54206 ENFRPISLMNID +I NK L ++ + +K K +H G + + I + Sbjct 528 ENFRPISLMNIDAKILNKILANRIQQHIK------KLIHHDQVGFIPGMQGWFNIRKSIN 581 Query 54205 LYKQTQR*EPHHHFI---TCRKSI*QNSTPLHDKSPGKIRNSRPKLSIVKAKHSKTVGNT 54035 + + R + +H I K+ + P K+ K+ L I++A + K N Sbjct 582 VIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANI 641 Query 54034 KINEE*YEAIPLKSGTT*DCPLSPYLFNVVCKVLAIAIRQRKEVKVIQIGREEVK 53870 +N + EA PLK+GT CPLSP LFN+V +VLA AIRQ KE+K IQ+G+EEVK Sbjct 642 ILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVK 696 Range 10: 982 to 1251 Score:279 bits(713), Expect:1e-73, Method:Compositional matrix adjust., Identities:139/270(51%), Positives:187/270(69%), Gaps:1/270(0%) Query 8564 GEESQTLGHWRKFHEQKPKPYALRSRFEKWDFIKLQSFCKAKDTVVRKKQQPTDWEKIFT 8385 G Q +G + F + PK A + + +KWD IKL+SFC AK+T +R +QPT WEKIF Sbjct 982 GITIQDIGVGKDFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFA 1041 Query 8384 NPTTDRGLISKIYKELTKVDCRAANNPIKK*GSEVNEEFTAEEC*MAEKHLKKCSTSLVI 8205 ++D+GLIS+IY EL ++ + NNPIKK ++N F+ E+ A+KH+KKCS+SL I Sbjct 1042 TYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAI 1101 Query 8204 REMQIKTTPRFYLTPVRMAKIKNSGDSKCWKGCGERGTLLHCWWDYRMVQQFWKSVWTFL 8025 REMQIKTT R++LTPVRMA IK SG+++CW+GCGE GTL+HCWWD ++VQ WKSVW FL Sbjct 1102 REMQIKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFL 1161 Query 8024 RKLDIELPEDPAIPLLCTYPNDAPT-YNKDTCSTMfiaaffiiARIWKEPRCPSTEE*YR 7848 R L++E+P DPAIPLL YP D + KDTC+ MFIAA F IA+ W +P CP+ + + Sbjct 1162 RDLELEIPFDPAIPLLGIYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIK 1221 Query 7847 KCGTSTQWNTIQLSKNNDFMKFIGKWMELE 7758 K KN++F+ F+G WM+LE Sbjct 1222 KMWHIYTMEYYAAIKNDEFISFVGTWMKLE 1251 Range 11: 673 to 863 Score:167 bits(424), Expect:3e-67, Method:Compositional matrix adjust., Identities:91/191(48%), Positives:128/191(67%), Gaps:6/191(3%) Query 77826 QIIPRAIEKK*GKEDI-VRKEELKISLFADDMTVYLNKPKRSTREILNVV-NGSKVAGYK 77653 +++ RAI ++ + I + KEE+K+SLFADDM VYL P S + +L ++ N SKV+GYK Sbjct 673 EVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYK 732 Query 77652 TNSNK*VAFLYTKEKQAEKEIREMTPFIIVTINIKYLCGTLIKEAKYLYDKNFKSL---- 77485 N K AFLY +Q E +I PF I + IKYL L ++ K L+ +N+K L Sbjct 733 INVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEI 792 Query 77484 KKDLRRWKDLPCSRIGRIDIVKLAILPKAIYKFSAIPIKIPTQFFIELERETCKFIWNNK 77305 K+D +WK++PCS +GRI+IVK+AILPK IY+F+AIPIK+P FF ELE+ T KFIWN K Sbjct 793 KEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQK 852 Query 77304 KTQGSKNYSQQ 77272 + + +K+ Q Sbjct 853 RARIAKSILSQ 863 Range 12: 559 to 681 Score:117 bits(292), Expect:3e-67, Method:Compositional matrix adjust., Identities:59/123(48%), Positives:81/123(65%), Gaps:7/123(5%) Query 78146 LHHRDAG----MVHYTEIHQDYSPNKQIQR---KSHMIISLDAENAFDKIQHPFMLKVLE 77988 +HH G M + I + + + I R K+H+IIS+DAE AFDKIQ PFMLK L Sbjct 559 IHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLN 618 Query 77987 RSETQGPYLNIVKALYNKPVDNIKLNGEKL*IIPLKSGTRQGCPISPFLFNVVLKLYLEQ 77808 + G YL I++A+Y+KP NI LNG+KL PLK+GTRQGCP+SP LFN+VL++ Sbjct 619 KLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARA 678 Query 77807 LKK 77799 +++ Sbjct 679 IRQ 681 Range 13: 616 to 798 Score:116 bits(291), Expect:3e-48, Method:Compositional matrix adjust., Identities:85/184(46%), Positives:111/184(60%), Gaps:11/184(5%) Query 29039 VLERSGIQGTYLHII*GIYSKSIANIKLNGEKIKAVPL---IRE*IGKAPHYLFNIILVF 28869 L + GI G YL II IY K ANI LNG+K++A PL R+ +P LFNI+L Sbjct 616 TLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSP-LLFNIVLEV 674 Query 28868 LSRAIRQLK-IKGIQLGKEEFKMSSFMDDIIVYISDPKNSITELLQLTYSFNKVTGYIFN 28692 L+RAIRQ K IKGIQLGKEE K+S F DD+IVY+ +P S LL+L +F+KV+GY N Sbjct 675 LARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKIN 734 Query 28691 SKNS---LYK**TGQERNLGNNTLFN-NHE**KYL-VNLTKKLKGLYDKNFKCLKKEI-E 28530 + S LY E + F + KYL + LT+ +K L+ +N+K L KEI E Sbjct 735 VQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKE 794 Query 28529 DNNQ 28518 D N+ Sbjct 795 DTNK 798 Range 14: 800 to 917 Score:105 bits(261), Expect:3e-48, Method:Compositional matrix adjust., Identities:57/118(48%), Positives:74/118(62%), Gaps:2/118(1%) Query 28510 KYLPRSRISRINIVKMAILPKEIYRLNIIPIKIQT*LFKDLERAILKIHMKK*YTQDSKT 28331 K +P S + RINIVKMAILPK IYR N IPIK+ F +LE+ LK + + +K+ Sbjct 800 KNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKS 859 Query 28330 FPNNKRTSGGITIPDLKLYYSAIVKK--WYW*RKRQADQ*NQIKDPEMNPHTYGHLIF 28163 + K +GGIT+PD KLYY A V K WYW + R DQ N+ + E+ PH Y +LIF Sbjct 860 ILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 917 Range 15: 1070 to 1162 Score:119 bits(299), Expect:7e-40, Method:Compositional matrix adjust., Identities:55/93(59%), Positives:68/93(73%), Gaps:1/93(1%) Query 76806 KMWYRSKQRILS-EEYGIAEKYLKKC*TSVDIREMQIKTTLRFYLIPVRMDKIKNSGDSR 76630 K W + R S E+ A+K++KKC +S+ IREMQIKTT+R++L PVRM IK SG++R Sbjct 1070 KKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNR 1129 Query 76629 CWRGCGERGILFHCCWD*KLIQSLWKLVWSFLR 76531 CWRGCGE G L HC WD KL+Q LWK VW FLR Sbjct 1130 CWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFLR 1162 Range 16: 1164 to 1241 Score:73.9 bits(180), Expect:7e-40, Method:Compositional matrix adjust., Identities:35/78(45%), Positives:50/78(64%), Gaps:1/78(1%) Query 76526 MDIGLPEESAIPLLSIYPKDV-PLYNKDTCSTMVTAAFLIIDRRWKEHRCPLRKEWRQKM 76350 +++ +P + AIPLL IYPKD KDTC+ M AA I + W + CP +W +KM Sbjct 1164 LELEIPFDPAIPLLGIYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKM 1223 Query 76349 WYSYTMEYYSTIKKNDFM 76296 W+ YTMEYY+ IK ++F+ Sbjct 1224 WHIYTMEYYAAIKNDEFI 1241 Range 17: 1 to 85 Score:100 bits(249), Expect:9e-38, Method:Compositional matrix adjust., Identities:43/85(51%), Positives:66/85(77%), Gaps:0/85(0%) Query 18008 ITGSNNHYSLISLNINGLNSTIKRNRLTNWICNEDPAFC*LQETHLRDKNIHYLRVKCWK 17829 +TGSN+H ++++LN+NGLNS IKR+RL +WI ++DP+ C +QETHL ++ H L++K W+ Sbjct 1 MTGSNSHITILTLNVNGLNSPIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWR 60 Query 17828 TKFQANDLTKQDGVAILISNKIDLQ 17754 +QAN K+ GVAIL+S+K D + Sbjct 61 KIYQANGKQKKAGVAILVSDKTDFK 85 Range 18: 90 to 163 Score:86.3 bits(212), Expect:9e-38, Method:Compositional matrix adjust., Identities:41/74(55%), Positives:54/74(72%), Gaps:0/74(0%) Query 17742 QNDKEGHFIFIKGKIHQDELSILNIYAPNIRAPT*IKGTLLKLKAYIAHHTIIVGDFKSP 17563 + DKEGH+I +KG I Q+EL+ILNIYAPN AP IK L L+ + HT+I+GDF +P Sbjct 90 KRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTP 149 Query 17562 LSSMDRSWKQKLTK 17521 LS +DRS +QK+ K Sbjct 150 LSILDRSTRQKVNK 163 Range 19: 1145 to 1273 Score:150 bits(379), Expect:1e-33, Method:Compositional matrix adjust., Identities:75/135(56%), Positives:98/135(72%), Gaps:10/135(7%) Query 75818 WVCNPLRKIIPFWKSVWRFLRKLDIELPEDPAIRLFGIYPKDAPTYK----KYTCSTMSI 75651 W C + + P WKSVWRFLR L++E+P DPAI L GIYPKD YK K TC+ M I Sbjct 1145 WDC---KLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKD---YKSCCYKDTCTRMFI 1198 Query 75650 AALFIIARSWKKPRCPSPEEWIQKKWYIYTMEYYSAIKNNDFMK*VGKWLELENIILSEV 75471 AALF IA++W +P CP+ +WI+K W+IYTMEYY+AIKN++F+ VG W++LE IILS++ Sbjct 1199 AALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAIKNDEFISFVGTWMKLETIILSKL 1258 Query 75470 AQSQKNTHGMHSLIS 75426 +Q QK H + SLI Sbjct 1259 SQEQKTKHRIFSLIG 1273 Range 20: 984 to 1228 Score:93.2 bits(230), Expect:2e-26, Method:Compositional matrix adjust., Identities:92/264(35%), Positives:130/264(49%), Gaps:45/264(17%) Query 11363 TSNTLAQGK-FLA*NINGYALRSRIDKWELIKLQRFCKAKHM---VNR--TKWQ------ 11506 T + GK F++ A + +IDKW+LIKL+ FC AK VNR T W+ Sbjct 984 TIQDIGVGKDFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATY 1043 Query 11507 -CKDELSLTILHLILG*YPKYTNNSGS*TPENQIILLKWGTELNRDSQFRNLKQPRREAP 11683 L I + + Y K TNN + KW ++NR ++ ++ Sbjct 1044 SSDKGLISRIYNELKQIYKKKTNNP----------IKKWAKDMNRHFSKEDIYAAKKHMK 1093 Query 11684 KIFQHPSSSGKCKSNQP*ESISH*SEWLGSKTQMLV----------RMCRK-RTHLHFWW 11830 K SSS + Q I + + +M + R C + T +H WW Sbjct 1094 KC----SSSLAIREMQ----IKTTMRYHLTPVRMAIIKKSGNNRCWRGCGEIGTLVHCWW 1145 Query 11831 DCKLAQPLWKTVWQFLRMlelvlleypavlllGIYTKDALT--YNKDICSSMFLAALFIL 12004 DCKL QPLWK+VW+FLR LEL + PA+ LLGIY KD + Y KD C+ MF+AALF + Sbjct 1146 DCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCCY-KDTCTRMFIAALFTI 1204 Query 12005 ARSWKESRCLSTEEWI*KTWYIYT 12076 A++W + C + +WI K W+IYT Sbjct 1205 AKTWNQPNCPTMIDWIKKMWHIYT 1228 Range 21: 1225 to 1274 Score:55.5 bits(132), Expect:2e-26, Method:Compositional matrix adjust., Identities:26/50(52%), Positives:36/50(72%), Gaps:1/50(2%) Query 12067 HLHN-EYYAVIKNNDFMKFIGKWMELENIILSELTQS*KNTHVMS*LISG 12213 H++ EYYA IKN++F+ F+G WM+LE IILS+L+Q K H + LI G Sbjct 1225 HIYTMEYYAAIKNDEFISFVGTWMKLETIILSKLSQEQKTKHRIFSLIGG 1274 Range 22: 897 to 982 Score:74.3 bits(181), Expect:1e-22, Method:Compositional matrix adjust., Identities:34/86(40%), Positives:55/86(63%), Gaps:1/86(1%) Query 72719 DRMQRSD-VQIKRHTYAHLIFDKETKNIQRKKESIFIKWCHSIWMSVCKKLQIGPYLSRC 72543 D+ R++ +I H Y +LIFDK KN Q K+S+ KWC W+++C+KL++ P+L+ Sbjct 897 DQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLLNKWCWENWLAICRKLKLDPFLTPY 956 Query 72542 TKLKCKCFEDLNIKPDTLNLIEHKEG 72465 TK+ + +DLN+KP T+ +E G Sbjct 957 TKINSRWIKDLNVKPKTIKTLEENLG 982 Range 23: 982 to 1038 Score:61.2 bits(147), Expect:1e-22, Method:Compositional matrix adjust., Identities:27/57(47%), Positives:38/57(66%), Gaps:0/57(0%) Query 72466 GKGLELIGTGRNFLTRTPMAHALNSGIDKWDLMKLESFCKASDIVNKTN*YPTGWEK 72296 G ++ IG G++F+++TP A A IDKWDL+KL+SFC A + + N PT WEK Sbjct 982 GITIQDIGVGKDFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEK 1038 Range 24: 1059 to 1256 Score:114 bits(284), Expect:1e-22, Method:Compositional matrix adjust., Identities:72/198(36%), Positives:105/198(53%), Gaps:6/198(3%) Query 11166 ELKKLDTHNAILKWGTEEKRGNS-----IV*RTLKEMFKVLSHQENANQTILRFDLTYVR 11002 ++ K T+N I KW + R S + +K+ L+ +E +T +R+ LT VR Sbjct 1059 QIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVR 1118 Query 11001 MAKIKNSDGSTYS*GCRAQGTLLQCW*ECKLLQTLGKSI*CFHRKLGMAIPQDPDISLPG 10822 MA IK S + GC GTL+ CW +CKL+Q L KS+ F R L + IP DP I L G Sbjct 1119 MAIIKKSGNNRCWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLG 1178 Query 10821 HISKRCSTIPQRQLINYV-IAALFVVVRN*KQSKCPSTEEWLMKVWYVYTTVYFHL*KNK 10645 K + + + IAALF + + Q CP+ +W+ K+W++YT Y+ KN Sbjct 1179 IYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAIKND 1238 Query 10644 SFLNFTGKWMDLKNFILS 10591 F++F G WM L+ ILS Sbjct 1239 EFISFVGTWMKLETIILS 1256 Range 25: 919 to 1125 Score:113 bits(283), Expect:2e-22, Method:Compositional matrix adjust., Identities:76/216(35%), Positives:112/216(51%), Gaps:23/216(10%) Query 11176 KPSSGKN---DSIFNKC*RFNWWSACRRMQIDLFLSPCTKLKSKWIKDLHIKPDMINLIE 11346 KP K DS+ NK NW + CR++++D FL+P TK+ S+WIKDL++KP I +E Sbjct 919 KPEKNKQWGKDSLLNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVKPKTIKTLE 978 Query 11347 EKVGKNLKHIGTGKISCIE-----------HQWLCSKIKN*QVGTHKIAKIL*GKAHGQ* 11493 E +G ++ IG GK + +W K+K+ ++ Sbjct 979 ENLGITIQDIGVGKDFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRV--------- 1029 Query 11494 NKMAMQR*VVFNNPTSDTGLISKIYK*LRKLDSREPNNPTKMGHRAKQRFSVQESQTAKK 11673 N+ +F +SD GLIS+IY L+++ ++ NNP K + R +E A K Sbjct 1030 NRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAK 1089 Query 11674 RST*NFSTSFVIREMQIKSTLRIHLTLVRMARIKNS 11781 + S+S IREMQIK+T+R HLT VRMA IK S Sbjct 1090 KHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKS 1125 Range 26: 1190 to 1273 Score:109 bits(273), Expect:3e-21, Method:Compositional matrix adjust., Identities:47/84(56%), Positives:66/84(78%), Gaps:0/84(0%) Query 32688 KDTCSTMFIAALFIIARS*KEPRCPSTEEWIQKMWYIYTMEYYSAIKNNDFMKFIGKWME 32867 KDTC+ MFIAALF IA++ +P CP+ +WI+KMW+IYTMEYY+AIKN++F+ F+G WM+ Sbjct 1190 KDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAIKNDEFISFVGTWMK 1249 Query 32868 LENIIRNDVTQSQKDTHGMHSMIS 32939 LE II + ++Q QK H + S+I Sbjct 1250 LETIILSKLSQEQKTKHRIFSLIG 1273 Range 27: 1176 to 1274 Score:104 bits(259), Expect:1e-19, Method:Compositional matrix adjust., Identities:52/99(53%), Positives:66/99(66%), Gaps:5/99(5%) Query 69590 LMGIYRKD-APIYSKDTCSTMIIAALFIISREWKQPKCPSTEKWIQKMWYIYTMEYYTAI 69414 L+GIY KD KDTC+ M IAALF I++ W QP CP+ WI+KMW+IYTMEYY AI Sbjct 1176 LLGIYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAI 1235 Query 69413 KKNEFMKFT----ELENIILGELTQSQKNTQGMYSLTSG 69309 K +EF+ F +LE IIL +L+Q QK ++SL G Sbjct 1236 KNDEFISFVGTWMKLETIILSKLSQEQKTKHRIFSLIGG 1274 Range 28: 411 to 479 Score:101 bits(252), Expect:7e-19, Method:Compositional matrix adjust., Identities:47/69(68%), Positives:55/69(79%), Gaps:0/69(0%) Query 16781 IRSYYKSLYSTKLENLQEMDNFLDRYQVPKLNQE*INHLNNPITPNEIEAVIKGLPTKKS 16602 IR YYK LY+ KLENL+EMD FLD Y +P+LNQE + LN PIT +EI A+I LPTKKS Sbjct 411 IREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKS 470 Query 16601 PGPDGFSAE 16575 PGPDGF+AE Sbjct 471 PGPDGFTAE 479 Range 29: 1069 to 1272 Score:95.9 bits(237), Expect:5e-17, Method:Compositional matrix adjust., Identities:69/212(33%), Positives:100/212(47%), Gaps:37/212(17%) Query 70545 IQK*GIKLNREFKKEETQMPENHLKK*SKSSVIRKMQIKMALRFHSTPIRMAKIKNSGVS 70366 I+K +NR F KE+ + H+KK S S IR+MQIK +R+H TP+RMA IK SG + Sbjct 1069 IKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNN 1128 Query 70365 TCWQ*CGEKDPSSIDGGIAN--WHNHSGNKLEGSSENWKYIYLKTQHIPRRCATMPQGVS 70192 CW+ CGE G + + W L S W+++ IP A G+ Sbjct 1129 RCWRGCGEI------GTLVHCWWDCKLVQPLWKSV--WRFLRDLELEIPFDPAIPLLGIY 1180 Query 70191 -------------SPMFIVAFCVTNRSYKQPICPPKEECVRKTWFICTMKYYLPINNNGN 70051 + MFI A +++ QP CP + ++K W I TM+YY I N+ Sbjct 1181 PKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIYTMEYYAAIKNDEF 1240 Query 70050 --------------LSEVTQTQKDMHGMYSLI 69997 LS+++Q QK H ++SLI Sbjct 1241 ISFVGTWMKLETIILSKLSQEQKTKHRIFSLI 1272 Range 30: 1168 to 1268 Score:87.8 bits(216), Expect:1e-14, Method:Compositional matrix adjust., Identities:44/101(44%), Positives:66/101(65%), Gaps:2/101(1%) Query 61941 LPEDTAIPLWHI-PKKCPNI*QRHMLHYVH-SSLFIIARIWKEHRCPSTEE*IQKMWYIY 61768 +P D AIPL I PK + + + ++LF IA+ W + CP+ + I+KMW+IY Sbjct 1168 IPFDPAIPLLGIYPKDYKSCCYKDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKMWHIY 1227 Query 61767 TMEYYSAIKNSDFMKFIGKWMELENILLSEVTQSHKNTHGL 61645 TMEYY+AIKN +F+ F+G WM+LE I+LS+++Q K H + Sbjct 1228 TMEYYAAIKNDEFISFVGTWMKLETIILSKLSQEQKTKHRI 1268 Range 31: 567 to 624 Score:81.6 bits(200), Expect:9e-13, Method:Compositional matrix adjust., Identities:39/58(67%), Positives:47/58(81%), Gaps:0/58(0%) Query 54258 IPRVQGSFNIQKSINVIRYINKLKDKNHIIISLHAEKAFDKIQHPFMTKALERSEIQG 54085 IP +QG FNI+KSINVI++IN+ KDKNH+IIS+ AEKAFDKIQ PFM K L + I G Sbjct 567 IPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDG 624 Range 32: 852 to 930 Score:80.9 bits(198), Expect:2e-12, Method:Compositional matrix adjust., Identities:38/79(48%), Positives:53/79(67%), Gaps:0/79(0%) Query 77306 KKPREAKTILNNKRTSGLIIVPDLKMYYRVIVIKSVWFWDRDRLVDQWYRNEESEMNIHT 77127 K+ R AK+IL+ K +G I +PD K+YY+ V K+ W+W ++R +DQW R E SE+ H Sbjct 852 KRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHI 911 Query 77126 YSHLIFDIGAKNSQWKKRS 77070 Y++LIFD KN QW K S Sbjct 912 YNYLIFDKPEKNKQWGKDS 930 Range 33: 1056 to 1272 Score:78.2 bits(191), Expect:1e-11, Method:Compositional matrix adjust., Identities:69/233(30%), Positives:109/233(46%), Gaps:34/233(14%) Query 44258 EINSLKRSRMQEIMKK*GIKLNREFTKEESRIPENHLKK*SKSSVIRKMQIKMTP*FHLS 44079 E+ + + + +KK +NR F+KE+ + H+KK S S IR+MQIK T +HL+ Sbjct 1056 ELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLT 1115 Query 44078 PSK------------WLR-SKIHITAHV---GKVVEK--RNLPQLLVGLQTGATTLEISL 43953 P + W +I H K+V+ +++ + L L+ LEI Sbjct 1116 PVRMAIIKKSGNNRCWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFLRDLE-----LEIPF 1170 Query 43952 QVPQKIGNIYIPEDPLYLSWAYTQKMPHHATGVCVPLVHSGFICNSQKL*QPTCPTMEEW 43773 + IY P+D Y S Y C + + ++ QP CPTM +W Sbjct 1171 DPAIPLLGIY-PKD--YKSCCYK--------DTCTRMFIAALFTIAKTWNQPNCPTMIDW 1219 Query 43772 IGKT*FICIRKYYLSIDNKDILSFASRWMELENVILSEVTLTQSGMHGMYSLI 43614 I K I +YY +I N + +SF WM+LE +ILS+++ Q H ++SLI Sbjct 1220 IKKMWHIYTMEYYAAIKNDEFISFVGTWMKLETIILSKLSQEQKTKHRIFSLI 1272 Range 34: 528 to 573 Score:75.5 bits(184), Expect:8e-11, Method:Compositional matrix adjust., Identities:33/46(72%), Positives:39/46(84%), Gaps:0/46(0%) Query 78259 ENFRPIPLMNINEKLLNKYLTKQIQEHIKMIIHHDKVGFITGMQGW 78122 ENFRPI LMNI+ K+LNK L +IQ+HIK +IHHD+VGFI GMQGW Sbjct 528 ENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGW 573 Range 35: 1129 to 1214 Score:64.3 bits(155), Expect:2e-07, Method:Compositional matrix adjust., Identities:37/86(43%), Positives:48/86(55%), Gaps:5/86(5%) Query 44029 RLWRK----GTFLNCWWDCKLVQPLWKSVCRFLRKLEIYIYLKTHYTSPGHIPRKCPT-M 43865 R WR GT ++CWWDCKLVQPLWKSV RFLR LE+ I G P+ + Sbjct 1129 RCWRGCGEIGTLVHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYKSCC 1188 Query 43864 LQEYVFHLFIVALFVTVRSCNNPHVP 43787 ++ +FI ALF ++ N P+ P Sbjct 1189 YKDTCTRMFIAALFTIAKTWNQPNCP 1214 Range 36: 875 to 949 Score:63.9 bits(154), Expect:2e-07, Method:Compositional matrix adjust., Identities:28/75(37%), Positives:41/75(54%), Gaps:0/75(0%) Query 70915 FSAFFVKDQVSVSLYWYRDRNTGQRNRIQDPEIKLQTYRHLIFDKEDKKIQWKTDNSFKN 71094 F ++ + YWY++R+ Q NR + EI Y +LIFDK +K QW D+ Sbjct 875 FKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLLNK 934 Query 71095 *CWSNWQTVCRKMKI 71139 CW NW +CRK+K+ Sbjct 935 WCWENWLAICRKLKL 949 Range 37: 919 to 970 Score:42.4 bits(98), Expect:1e-06, Method:Compositional matrix adjust., Identities:23/52(44%), Positives:31/52(59%), Gaps:0/52(0%) Query 13465 KDAKSLQWQK*MIFNK*C*SN*KTICRRKKIDPYSSPCTKFKSK*IKDFKLK 13310 K K+ QW K + NK C N ICR+ K+DP+ +P TK S+ IKD +K Sbjct 919 KPEKNKQWGKDSLLNKWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVK 970 Range 38: 1008 to 1039 Score:38.9 bits(89), Expect:1e-06, Method:Compositional matrix adjust., Identities:17/32(53%), Positives:22/32(68%), Gaps:0/32(0%) Query 13194 IDKWALVKLKGFCKSKDIVNRAKWQPTDYERI 13099 IDKW L+KLK FC +K+ R QPT +E+I Sbjct 1008 IDKWDLIKLKSFCTAKETTIRVNRQPTTWEKI 1039 Range 39: 993 to 1040 Score:41.6 bits(96), Expect:2e-06, Method:Compositional matrix adjust., Identities:21/48(44%), Positives:30/48(62%), Gaps:0/48(0%) Query 55160 NFLN*TPIAHTLRSRIDKRDLAKFESFCKAKDIVNREYQQPTD*GKLF 55303 +F++ TP A + +IDK DL K +SFC AK+ R +QPT K+F Sbjct 993 DFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIF 1040 Range 40: 1037 to 1070 Score:39.3 bits(90), Expect:2e-06, Method:Compositional matrix adjust., Identities:18/34(53%), Positives:25/34(73%), Gaps:0/34(0%) Query 55293 ENYFTNLTSDRGLISKIYKELKKLTIKEPNNPMK 55394 E F +SD+GLIS+IY ELK++ K+ NNP+K Sbjct 1037 EKIFATYSSDKGLISRIYNELKQIYKKKTNNPIK 1070 Range 41: 1001 to 1075 Score:58.5 bits(140), Expect:1e-05, Method:Compositional matrix adjust., Identities:30/75(40%), Positives:43/75(57%), Gaps:0/75(0%) Query 52960 SLCSKNQNRQMRPQKTAKLCKEKDTGIRTKRQSTDWEKIFINPPSNGGLISKIYKELKKL 52781 ++ +K++ + K C K+T IR RQ T WEKIF S+ GLIS+IY ELK++ Sbjct 1001 AMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQI 1060 Query 52780 DSR*PNNPIKSGVQS 52736 + NNPIK + Sbjct 1061 YKKKTNNPIKKWAKD 1075 Range 42: 1138 to 1173 Score:53.9 bits(128), Expect:3e-04, Method:Compositional matrix adjust., Identities:23/36(64%), Positives:27/36(75%), Gaps:0/36(0%) Query 70339 GSFLH*WWDCKLAQPLWK*T*RFLRKLEIYLPEDPA 70232 G+ +H WWDCKL QPLWK RFLR LE+ +P DPA Sbjct 1138 GTLVHCWWDCKLVQPLWKSVWRFLRDLELEIPFDPA 1173 Range 43: 1172 to 1223 Score:49.3 bits(116), Expect:0.006, Method:Compositional matrix adjust., Identities:27/53(51%), Positives:34/53(64%), Gaps:3/53(5%) Query 43227 PSYTLLDIHLKDAPT--YNKDICSTMFISALFLIAKEWKQTKCPSTEKWIQKM 43075 P+ LL I+ KD + Y KD C+ MFI+ALF IAK W Q CP+ WI+KM Sbjct 1172 PAIPLLGIYPKDYKSCCY-KDTCTRMFIAALFTIAKTWNQPNCPTMIDWIKKM 1223 >RecName: Full=LINE-1 reverse transcriptase homolog [Nycticebus coucang] Sequence ID: P08548.1 Length: 1260 Range 1: 697 to 1165 Score:465 bits(1196), Expect:0.0, Method:Compositional matrix adjust., Identities:229/476(48%), Positives:328/476(68%), Gaps:15/476(3%) Query 63346 SLFSHDRIVYLSDPKNSTRELLNLINTYSKVAGNKINSNKSVAFLYTKEKQAEKEIREMT 63167 SLF+ D IVYL + ++ST +LL +I YS V+G KIN++KSVAF+YT QAEK +++ Sbjct 697 SLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSI 756 Query 63166 PFIIVPNNIKYLGVTLTKQVKYLYDKNFKPLKKEIEEDLRRWKDLPCLWIGKINIEKWPL 62987 PF +VP +KYLGV LTK VK LY +N++ L+KEI ED+ +WK++PC W+G+INI K + Sbjct 757 PFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSI 816 Query 62986 YKRDLQIQCNPHQNTKPIPQRVIQKNFQ------IHL--DNKKLRIAKTILNNKKTSWGT 62831 + + N IP + F+ +H + KK +IAKT+L+NK + G Sbjct 817 LPKAIY-------NFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTLLSNKNKAGGI 869 Query 62830 TIPELKQYYRAIVIKTAWY*YRDRQIDQWNRIEDPEMNPHTYGHLIFDKGPKTIPWEKDS 62651 T+P+L+ YY++IVIKTAWY +++R++D WNRIE+ EM+P TY +LIFDK K I W KDS Sbjct 870 TLPDLRLYYKSIVIKTAWYWHKNREVDVWNRIENQEMDPATYHYLIFDKPIKNIQWGKDS 929 Query 62650 IFSKWCWFNWRSACRRMQVDPCLSPYT*LKSQWIKELHIKPYTLKLIEEKVGKHLEHMGT 62471 +F+KWCW NW + CRR+++DP LSP T + S WIK+L+++ T+K++EE GK LE + Sbjct 930 LFNKWCWVNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLRHETIKILEESAGKTLEGISL 989 Query 62470 GENFRNKTPMTYPLRSRINKWDLIKLQSFCKAKGTVVRTKQEPTDCAKIFTNRTTERGLI 62291 GE F +TP S+I+ WDLIKL+SFC AK V + ++P++ KIF T+++GLI Sbjct 990 GEYFMRRTPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKIFAGYTSDKGLI 1049 Query 62290 SKIYKELKKFNCRETNNPIKKCGSELNKDFTA*KCRMAEKHLKKCSTSLVIREMQIKTTL 62111 ++I++ELK N + T +PI +L ++F+ KH+KK S+SL+IREMQIKTTL Sbjct 1050 TRIHRELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTL 1109 Query 62110 RFHLTPVRMAKIKTSGDSKCRQGCGERGTVLHFWWDCRLVQPFWKSVWRFPRKLDI 61943 R+HLTPVR+A I S + +C +GCG +GT+LH WW+C L++ FWK VWR R L I Sbjct 1110 RYHLTPVRVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKI 1165 Range 2: 145 to 578 Score:374 bits(959), Expect:0.0, Method:Compositional matrix adjust., Identities:216/444(49%), Positives:275/444(61%), Gaps:20/444(4%) Query 17575 FQKPTLINGQIMETEINKDIHRLREVMNQIDLTDTYRIFYTKEKGYMFYSPPHITFSKID 17396 F P + + + +++K+I L + +DLTD YR F+ + Y F+S H T+SKID Sbjct 145 FNTPLAVLDRSSKKKLSKEILDLNSTIQHLDLTDIYRTFHPNKTEYTFFSSAHGTYSKID 204 Query 17395 HIIGDKTGLNR*RKIEIIPCILSDHHGLNQVFNNKRG-RMPTYTWKLNNALLNDNLVKKE 17219 HI+G K+ L++ +KIEIIPCI SDHHG+ NN R T TWKLNN +L D V E Sbjct 205 HILGHKSNLSKFKKIEIIPCIFSDHHGIKVELNNNRNLHTHTKTWKLNNLMLKDTWVIDE 264 Query 17218 IKK*IKDFLELNKNEGKTSPNLWDTMKAVLRGKHIGLSARRKKQEKAYVSSLTAHLKALE 17039 IKK I FLE N N+ NLWDT KAVLRGK I L A KK E+ V++L HLK LE Sbjct 265 IKKEITKFLEQNNNQDTNYQNLWDTAKAVLRGKFIALQAFLKKTEREEVNNLMGHLKQLE 324 Query 17038 QKEANTPRRNRRQEIIKLRAEINQVETKRTIG*INRTKSWFSEKINKKDKPLARLMRGHI 16859 ++E + P+ +RR+EI K+RAE+N++E KR I IN++KSWF EKINK DKPLA L R Sbjct 325 KEEHSNPKPSRRKEITKIRAELNEIENKRIIQQINKSKSWFFEKINKIDKPLANLTRKKR 384 Query 16858 ECVQINKIRNEKGDIAIESEEIQKKSSDPTTKAY---------IPQNLKICRKWTIS*TG 16706 I+ IRN +I + EIQK ++ K Y I Q L+ C +S Sbjct 385 VKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKE 444 Query 16705 TRYRS*IRNR*TI*TTP*LLTK*KQSLKVSQPKRVQAQTGLVQRSNQTFIEDLIPILSKL 16526 + NR P ++ +++ K+ G QTF E+L+PIL L Sbjct 445 VE----MLNR------PISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNL 494 Query 16525 FHKIETDGALPNSFYEATITLIPKPHKDPTKKENFRPISPMNIDAKILNKILANRIQEHI 16346 F IE +G LPN+FYEA ITLIPKP KDPT+KEN+RPIS MNIDAKILNKIL NRIQ+HI Sbjct 495 FQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHI 554 Query 16345 KTIIHHDQVGFIPDMQGWFNIQKA 16274 K IIHHDQVGFIP QGWFNI+K+ Sbjct 555 KKIIHHDQVGFIPGSQGWFNIRKS 578 Range 3: 419 to 699 Score:342 bits(877), Expect:0.0, Method:Compositional matrix adjust., Identities:168/281(60%), Positives:218/281(77%), Gaps:0/281(0%) Query 64179 STKHENLKEMDNFLDRNQVPKLNQEQINHLSNPTTPNEIKKVIKGLQTKKSTGPDGFSAE 64000 S K+ENLKE+D +L+ +P+L+Q+++ L+ P + +EI I+ L KKS GPDGF++E Sbjct 419 SHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSE 478 Query 63999 FYQTFIEDLIPILSKLFHKIETDGVLPNSFYEAKIILSAKLHKDPTKKENFRPISLKNID 63820 FYQTF E+L+PIL LF IE +G+LPN+FYEA I L K KDPT+KEN+RPISL NID Sbjct 479 FYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNID 538 Query 63819 AKILNKILAKQIQEHIKTIIHHDQVGFIPHMQGWFNIWKTINVIHYINKLKEQNHVIISL 63640 AKILNKIL +IQ+HIK IIHHDQVGFIP QGWFNI K+INVI +INKLK ++H+I+S+ Sbjct 539 AKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSI 598 Query 63639 DAEKAFDKIQHPFMIKVLERIGIQGPYLKIFKDIHNKPVANIKLNGEKREAIPLKSGTSQ 63460 DAEKAFD IQHPFMI+ L++IGI+G +LK+ + I++KP ANI LNG K ++ PL+SGT Q Sbjct 599 DAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQ 658 Query 63459 VCPLSPYLFNIFLDVLSRATR*QKEMKWKQIGKEEVKNHYF 63337 CPLSP LFNI ++VL+ A R +K +K IG EE+K F Sbjct 659 GCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLSLF 699 Range 4: 937 to 1260 Score:336 bits(862), Expect:0.0, Method:Compositional matrix adjust., Identities:162/324(50%), Positives:228/324(70%), Gaps:3/324(0%) Query 15206 VNWRSACRRMQINPCLSPCTKHKSKWIKDIHIKPDTLKLIEENVGKHLEHMGTGE*FLNK 15027 VNW + CRR++++P LSP TK S WIKD++++ +T+K++EE+ GK LE + GE F+ + Sbjct 937 VNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLRHETIKILEESAGKTLEGISLGEYFMRR 996 Query 15026 TPKAYALRSKIDKWDLIKLQSFCKAKRTVVRTKQ*PTNWKKIFTNPTTDRGLISKVYKEL 14847 TP+A SKI WDLIKL+SFC AK V + + P+ W+KIF T+D+GLI+++++EL Sbjct 997 TPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKIFAGYTSDKGLITRIHREL 1056 Query 14846 KNLDCRETNNPIKNGVQS*TKN-SQLRNA*WLRNT*RNVNIFSQREMQIKATLRFHLAQV 14670 K+++ + T +PI + +N S+ ++ ++ + REMQIK TLR+HL V Sbjct 1057 KHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTLRYHLTPV 1116 Query 14669 RMAKIKNSGDSTCWRGCGERGTHLHCWWDCRLVQPFWKSVWRFLRKLDIELPEDPAIPLL 14490 R+A I S + CWRGCG +GT LHCWW+C L++ FWK VWR LR L I+LP DP IPLL Sbjct 1117 RVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKIDLPFDPIIPLL 1176 Query 14489 GIYPNDAPT-YNKDTCSSMFIAGLFIIARSWK*TRCPSTEEWIQKMWYIYTMEYYSAI-K 14316 G+YP D + YNKD C+ MFIA FIIA+SWK +CPST EW K+WY+YTMEYY+A+ K Sbjct 1177 GLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAALKK 1236 Query 14315 NNDFMKFIGKWM*LENIILSEVTQ 14244 + DF F+ WM LE+I+LS+V+Q Sbjct 1237 DGDFTSFMFTWMELEHILLSKVSQ 1260 Range 5: 1 to 408 Score:334 bits(857), Expect:0.0, Method:Compositional matrix adjust., Identities:189/408(46%), Positives:269/408(65%), Gaps:6/408(1%) Query 65414 TGSTNHYSLISLNINGLNSPIKRHRLTNWIRNEDPAFCCLQ*THLSGKERHYLRVKGWKK 65235 TG + S+ S+N+NGLN P+KRHRL +WI+ P CC+Q +HL+ K+++ L+VKGW Sbjct 1 TGLSKGLSIFSINVNGLNCPLKRHRLADWIQKLKPDICCIQESHLTLKDKYRLKVKGWSS 60 Query 65234 TFQANGLKKQAGIDILISNKINFQLKVIKQDkkghfifikgkiHQDELAILNVSATNTRA 65055 FQANG +K+AGI IL ++ I F+ I++DK GHFIF+KG DE++I+N+ A N A Sbjct 61 IFQANGKQKKAGIAILFADAIGFKPTKIRKDKDGHFIFVKGNTQYDEISIINIYAPNHNA 120 Query 65054 PTYIKETLLELKAHIAPHTIIVGDFNTPLSSMDR*WKQKLNRDIDRLREIMNQMDLTDIY 64875 P +I+ETL ++ I+ +I+VGDFNTPL+ +DR K+KL+++I L + +DLTDIY Sbjct 121 PQFIRETLTDMSNLISSTSIVVGDFNTPLAVLDRSSKKKLSKEILDLNSTIQHLDLTDIY 180 Query 64874 RTFYPTTKGYTLFSPPHGTFSKIDHIISHKTGLNRYRKIKIITCVLSHHHGLKLVFNNNK 64695 RTF+P YT FS HGT+SKIDHI+ HK+ L++++KI+II C+ S HHG+K+ NNN+ Sbjct 181 RTFHPNKTEYTFFSSAHGTYSKIDHILGHKSNLSKFKKIEIIPCIFSDHHGIKVELNNNR 240 Query 64694 ------RRMEVEQCSSQ**PGQRRNKERN**TSEFNENEGTTYTNL*DTMEDVLRRTLID 64533 + ++ + K+ E N N+ T Y NL DT + VLR I Sbjct 241 NLHTHTKTWKLNNLMLKDTWVIDEIKKEITKFLEQNNNQDTNYQNLWDTAKAVLRGKFIA 300 Query 64532 LSACRKKQERVYISSLAAQLKALEQKEGNTPRRSRRQKIIKLRAEINQVETKRTIQRINR 64353 L A KK ER +++L LK LE++E + P+ SRR++I K+RAE+N++E KR IQ+IN+ Sbjct 301 LQAFLKKTEREEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIRAELNEIENKRIIQQINK 360 Query 64352 TKSWFSEKINKIQKPLARLMRGHRDCVQINKIRNEKGDITTV*EEFKK 64209 +KSWF EKINKI KPLA L R R I+ IRN +ITT E +K Sbjct 361 SKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGNDEITTDPSEIQK 408 Range 6: 695 to 935 Score:306 bits(785), Expect:0.0, Method:Compositional matrix adjust., Identities:139/241(58%), Positives:189/241(78%), Gaps:0/241(0%) Query 15925 KISLFADDMIVYLRDPQSSTRELLNLINTFSKVAGYKINSYKSVAFLYTK*NQAEKEFRE 15746 K+SLFADDMIVYL + + ST +LL +I +S V+GYKIN++KSVAF+YT NQAEK ++ Sbjct 695 KLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKD 754 Query 15745 KTCFIIVPNNIKYLSVNVNKQVKDLYDKNFKPLKKEIEEDLRRWKDLPCLWIGRINIVKM 15566 F +VP +KYL V + K VKDLY +N++ L+KEI ED+ +WK++PC W+GRINIVKM Sbjct 755 SIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKM 814 Query 15565 AILPKAICRFNAIPIKIPIQLFRESYRTICKFIWNNKKPRIAKTILNNKRTSGGISFPEL 15386 +ILPKAI FNAIPIK P+ F++ + I FIWN KKP+IAKT+L+NK +GGI+ P+L Sbjct 815 SILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAKTLLSNKNKAGGITLPDL 874 Query 15385 KQYYRTIVVKTACYWYRDRQIDQWNRIEDPEMNPHTYGHLIFDKGARAIQWKKDSIFSKW 15206 + YY++IV+KTA YW+++R++D WNRIE+ EM+P TY +LIFDK + IQW KDS+F+KW Sbjct 875 RLYYKSIVIKTAWYWHKNREVDVWNRIENQEMDPATYHYLIFDKPIKNIQWGKDSLFNKW 934 Query 15205 S 15203 Sbjct 935 C 935 Range 7: 576 to 695 Score:149 bits(376), Expect:0.0, Method:Compositional matrix adjust., Identities:71/120(59%), Positives:98/120(81%), Gaps:0/120(0%) Query 16281 KKPINVIHYINKLKYENHMIISLDAEKAFDKIQHPFIIKVLERIGIQGLYLNIVKALHSK 16102 +K INVI +INKLK ++HMI+S+DAEKAFD IQHPF+I+ L++IGI+G +L +++A++SK Sbjct 576 RKSINVIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSK 635 Query 16101 PVANIKLNGEKLEAIPIKSGIGQGYTLSLFLFSILLEVLVRAIRQQKEIKGIQIGKEEVK 15922 P ANI LNG KL++ P++SG QG LS LF+I++EVL AIR++K IKGI IG EE+K Sbjct 636 PTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIK 695 Range 8: 721 to 1022 Score:275 bits(703), Expect:6e-146, Method:Compositional matrix adjust., Identities:140/303(46%), Positives:210/303(69%), Gaps:2/303(0%) Query 53796 LKKFNKMSRDKINSNK*VAFFYSKDKQAEKEIREMAPFMIVSNK*IKYLDMTLTKQVKDL 53617 +K+++ +S KIN++K VAF Y+ + QAEK +++ PF +V K +KYL + LTK VKDL Sbjct 721 IKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKK-MKYLGVYLTKDVKDL 779 Query 53616 YDKNFKSLKKEIKEYLRRRTDLSCSWIGRIDLVKMAILPKAINRFNAIPIKFPT*FFIEI 53437 Y +N+++L+KEI E + + ++ CSW+GRI++VKM+ILPKAI FNAIPIK P +F ++ Sbjct 780 YKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDL 839 Query 53436 ERTICKFLWNKKRNRIEKNILNNKRTSGGVTIPNLKQYYRAIVIKTVIGTETGR-LYQWN 53260 E+ I F+WN+K+ +I K +L+NK +GG+T+P+L+ YY++IVIKT R + WN Sbjct 840 EKIILHFIWNQKKPQIAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNREVDVWN 899 Query 53259 RTEYPEINPQTHGHMIFVKGAKIIQWKKDSIFKQWC*FNWRSACRRMWIDPFLSPCTKHK 53080 R E E++P T+ ++IF K K IQW KDS+F +WC NW + CRR+ +DP LSP TK Sbjct 900 RIENQEMDPATYHYLIFDKPIKNIQWGKDSLFNKWCWVNWLAICRRLKLDPHLSPLTKID 959 Query 53079 FKWINNLHIKPDTLKLIEEKVRKMLEHIGIGENFMNKTPTAYALRTRIDK*DLKKLQSYV 52900 WI +L+++ +T+K++EE K LE I +GE FM +TP A ++I DL KL+S+ Sbjct 960 SHWIKDLNLRHETIKILEESAGKTLEGISLGEYFMRRTPQAIEAVSKIHYWDLIKLKSFC 1019 Query 52899 RKK 52891 K Sbjct 1020 TAK 1022 Range 9: 1093 to 1237 Score:176 bits(445), Expect:6e-146, Method:Compositional matrix adjust., Identities:80/145(55%), Positives:104/145(71%), Gaps:1/145(0%) Query 52686 KEITSLVIGEMQIKTTLRFHLIPVRMNKIKISGDSRCLQGCGERETLVHCW*D*KLVELF 52507 K +SL+I EMQIKTTLR+HL PVR+ I S + RC +GCG + TL+HCW + L+ F Sbjct 1093 KSSSSLIIREMQIKTTLRYHLTPVRVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSF 1152 Query 52506 WKSVWMFLRKLDIPLPEDPVIPLLGIYPNGTPT-YNKETCSYMFIAA*FPISRRWKEPRC 52330 WK VW LR L I LP DP+IPLLG+YP + YNK+ C+ MFIAA F I++ WK+P+C Sbjct 1153 WKDVWRILRDLKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKC 1212 Query 52329 PSTEEWIQKMWYIYTKEYY*SIKNN 52255 PST EW K+WY+YT EYY ++K + Sbjct 1213 PSTHEWTSKLWYMYTMEYYAALKKD 1237 Range 10: 527 to 695 Score:84.3 bits(207), Expect:6e-146, Method:Compositional matrix adjust., Identities:61/175(35%), Positives:91/175(52%), Gaps:13/175(7%) Query 54373 ENFRPISLMNID*QIHNKFLQSKSKNTLK*SSIMIK*LHPKGAGIV*----YTEIHQCNP 54206 EN+RPISLMNID +I NK L ++ + +K K +H G + + I + Sbjct 527 ENYRPISLMNIDAKILNKILTNRIQQHIK------KIIHHDQVGFIPGSQGWFNIRKSIN 580 Query 54205 LYKQTQR*EPHHHFI---TCRKSI*QNSTPLHDKSPGKIRNSRPKLSIVKAKHSKTVGNT 54035 + + + + H I K+ P ++ KI L +++A +SK N Sbjct 581 VIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANI 640 Query 54034 KINEE*YEAIPLKSGTT*DCPLSPYLFNVVCKVLAIAIRQRKEVKVIQIGREEVK 53870 +N ++ PL+SGT CPLSP LFN+V +VLAIAIR+ K +K I IG EE+K Sbjct 641 ILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIK 695 Range 11: 1014 to 1074 Score:43.1 bits(100), Expect:6e-146, Method:Compositional matrix adjust., Identities:20/61(33%), Positives:34/61(55%), Gaps:0/61(0%) Query 52918 KTAKLCKEKDTGIRTKRQSTDWEKIFINPPSNGGLISKIYKELKKLDSR*PNNPIKSGVQ 52739 K C K+ + RQ ++WEKIF S+ GLI++I++ELK ++ + +PI + Sbjct 1014 KLKSFCTAKNIVSKASRQPSEWEKIFAGYTSDKGLITRIHRELKHINKKRTRDPISGWAR 1073 Query 52738 S 52736 Sbjct 1074 D 1074 Range 12: 1235 to 1260 Score:33.9 bits(76), Expect:6e-146, Method:Compositional matrix adjust., Identities:15/26(58%), Positives:20/26(76%), Gaps:0/26(0%) Query 52166 KKNNDFMQFIGKWNELENIILSKVTQ 52089 KK+ DF F+ W ELE+I+LSKV+Q Sbjct 1235 KKDGDFTSFMFTWMELEHILLSKVSQ 1260 Range 13: 689 to 857 Score:164 bits(414), Expect:6e-100, Method:Compositional matrix adjust., Identities:84/169(50%), Positives:119/169(70%), Gaps:5/169(2%) Query 77778 VRKEELKISLFADDMTVYLNKPKRSTREILNVVNG-SKVAGYKTNSNK*VAFLYTKEKQA 77602 + EE+K+SLFADDM VYL + ST ++L V+ S V+GYK N++K VAF+YT QA Sbjct 689 IGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQA 748 Query 77601 EKEIREMTPFIIVTINIKYLCGTLIKEAKYLYDKNFKSLKK----DLRRWKDLPCSRIGR 77434 EK +++ PF +V +KYL L K+ K LY +N+++L+K D+ +WK++PCS +GR Sbjct 749 EKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGR 808 Query 77433 IDIVKLAILPKAIYKFSAIPIKIPTQFFIELERETCKFIWNNKKTQGSK 77287 I+IVK++ILPKAIY F+AIPIK P +F +LE+ FIWN KK Q +K Sbjct 809 INIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQIAK 857 Range 14: 587 to 683 Score:111 bits(278), Expect:6e-100, Method:Compositional matrix adjust., Identities:48/97(49%), Positives:74/97(76%), Gaps:0/97(0%) Query 78080 QIQRKSHMIISLDAENAFDKIQHPFMLKVLERSETQGPYLNIVKALYNKPVDNIKLNGEK 77901 +++ K HMI+S+DAE AFD IQHPFM++ L++ +G +L +++A+Y+KP NI LNG K Sbjct 587 KLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVK 646 Query 77900 L*IIPLKSGTRQGCPISPFLFNVVLKLYLEQLKKNEA 77790 L PL+SGTRQGCP+SP LFN+V+++ +++ +A Sbjct 647 LKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKA 683 Range 15: 851 to 932 Score:87.0 bits(214), Expect:6e-100, Method:Compositional matrix adjust., Identities:43/82(52%), Positives:57/82(69%), Gaps:0/82(0%) Query 77306 KKPREAKTILNNKRTSGLIIVPDLKMYYRVIVIKSVWFWDRDRLVDQWYRNEESEMNIHT 77127 KKP+ AKT+L+NK +G I +PDL++YY+ IVIK+ W+W ++R VD W R E EM+ T Sbjct 851 KKPQIAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNREVDVWNRIENQEMDPAT 910 Query 77126 YSHLIFDIGAKNSQWKKRSHFQ 77061 Y +LIFD KN QW K S F Sbjct 911 YHYLIFDKPIKNIQWGKDSLFN 932 Range 16: 527 to 572 Score:74.3 bits(181), Expect:6e-100, Method:Compositional matrix adjust., Identities:33/46(72%), Positives:39/46(84%), Gaps:0/46(0%) Query 78259 ENFRPIPLMNINEKLLNKYLTKQIQEHIKMIIHHDKVGFITGMQGW 78122 EN+RPI LMNI+ K+LNK LT +IQ+HIK IIHHD+VGFI G QGW Sbjct 527 ENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGW 572 Range 17: 985 to 1252 Score:241 bits(615), Expect:1e-61, Method:Compositional matrix adjust., Identities:128/270(47%), Positives:176/270(65%), Gaps:4/270(1%) Query 8558 ESQTLGHWRKFHEQKPKPYALRSRFEKWDFIKLQSFCKAKDTVVRKKQQPTDWEKIFTNP 8379 E +LG + F + P+ S+ WD IKL+SFC AK+ V + +QP++WEKIF Sbjct 985 EGISLGEY--FMRRTPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKIFAGY 1042 Query 8378 TTDRGLISKIYKELTKVDCRAANNPIKK*GSEVNEEFTAEEC*MAEKHLKKCSTSLVIRE 8199 T+D+GLI++I++EL ++ + +PI ++ F+ E+ KH+KK S+SL+IRE Sbjct 1043 TSDKGLITRIHRELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIRE 1102 Query 8198 MQIKTTPRFYLTPVRMAKIKNSGDSKCWKGCGERGTLLHCWWDYRMVQQFWKSVWTFLRK 8019 MQIKTT R++LTPVR+A I S + +CW+GCG +GTLLHCWW+ +++ FWK VW LR Sbjct 1103 MQIKTTLRYHLTPVRVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRD 1162 Query 8018 LDIELPEDPAIPLLCTYPNDAPT-YNKDTCSTMfiaaffiiARIWKEPRCPSTEE*YRKC 7842 L I+LP DP IPLL YP D + YNKD C+ MFIAA FIIA+ WK+P+CPST E K Sbjct 1163 LKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKL 1222 Query 7841 -GTSTQWNTIQLSKNNDFMKFIGKWMELEN 7755 T L K+ DF F+ WMELE+ Sbjct 1223 WYMYTMEYYAALKKDGDFTSFMFTWMELEH 1252 Range 18: 1071 to 1161 Score:99.8 bits(247), Expect:5e-35, Method:Compositional matrix adjust., Identities:47/91(52%), Positives:60/91(65%), Gaps:1/91(1%) Query 76800 WYRSKQRILS-EEYGIAEKYLKKC*TSVDIREMQIKTTLRFYLIPVRMDKIKNSGDSRCW 76624 W R +R S E+ K++KK +S+ IREMQIKTTLR++L PVR+ I S + RCW Sbjct 1071 WARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTLRYHLTPVRVAHITKSPNQRCW 1130 Query 76623 RGCGERGILFHCCWD*KLIQSLWKLVWSFLR 76531 RGCG +G L HC W+ LI+S WK VW LR Sbjct 1131 RGCGGKGTLLHCWWECPLIRSFWKDVWRILR 1161 Range 19: 1163 to 1240 Score:77.4 bits(189), Expect:5e-35, Method:Compositional matrix adjust., Identities:39/78(50%), Positives:51/78(65%), Gaps:2/78(2%) Query 76526 MDIGLPEESAIPLLSIYPKDV-PLYNKDTCSTMVTAAFLIIDRRWKEHRCPLRKEWRQKM 76350 + I LP + IPLL +YP+D YNKD C+ M AA II + WK+ +CP EW K+ Sbjct 1163 LKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKL 1222 Query 76349 WYSYTMEYYSTIKKN-DF 76299 WY YTMEYY+ +KK+ DF Sbjct 1223 WYMYTMEYYAALKKDGDF 1240 Range 20: 89 to 166 Score:83.2 bits(204), Expect:1e-29, Method:Compositional matrix adjust., Identities:40/78(51%), Positives:55/78(70%), Gaps:0/78(0%) Query 17742 QNDKEGHFIFIKGKIHQDELSILNIYAPNIRAPT*IKGTLLKLKAYIAHHTIIVGDFKSP 17563 + DK+GHFIF+KG DE+SI+NIYAPN AP I+ TL + I+ +I+VGDF +P Sbjct 89 RKDKDGHFIFVKGNTQYDEISIINIYAPNHNAPQFIRETLTDMSNLISSTSIVVGDFNTP 148 Query 17562 LSSMDRSWKQKLTKIYTD 17509 L+ +DRS K+KL+K D Sbjct 149 LAVLDRSSKKKLSKEILD 166 Range 21: 1 to 91 Score:76.3 bits(186), Expect:1e-29, Method:Compositional matrix adjust., Identities:40/94(43%), Positives:58/94(61%), Gaps:3/94(3%) Query 18005 TGSNNHYSLISLNINGLNSTIKRNRLTNWICNEDPAFC*LQETHLRDKNIHYLRVKCWKT 17826 TG + S+ S+N+NGLN +KR+RL +WI P C +QE+HL K+ + L+VK W + Sbjct 1 TGLSKGLSIFSINVNGLNCPLKRHRLADWIQKLKPDICCIQESHLTLKDKYRLKVKGWSS 60 Query 17825 KFQANDLTKQDGVAILISNKIDLQLKVIKMIRKD 17724 FQAN K+ G+AIL ++ I + IRKD Sbjct 61 IFQANGKQKKAGIAILFADAIGFK---PTKIRKD 91 Range 22: 1144 to 1260 Score:130 bits(326), Expect:2e-27, Method:Compositional matrix adjust., Identities:68/120(57%), Positives:85/120(70%), Gaps:5/120(4%) Query 75818 WVCNPLRKIIPFWKSVWRFLRKLDIELPEDPAIRLFGIYPKDAPT-YKKYTCSTMSIAAL 75642 W C PL I FWK VWR LR L I+LP DP I L G+YP+D + Y K C+ M IAA Sbjct 1144 WEC-PL--IRSFWKDVWRILRDLKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQ 1200 Query 75641 FIIARSWKKPRCPSPEEWIQKKWYIYTMEYYSAI-KNNDFMK*VGKWLELENIILSEVAQ 75465 FIIA+SWKKP+CPS EW K WY+YTMEYY+A+ K+ DF + W+ELE+I+LS+V+Q Sbjct 1201 FIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAALKKDGDFTSFMFTWMELEHILLSKVSQ 1260 Range 23: 727 to 916 Score:114 bits(284), Expect:1e-22, Method:Compositional matrix adjust., Identities:74/197(38%), Positives:112/197(56%), Gaps:17/197(8%) Query 28723 VSTK*LDTYLTQRTLYTSDKLAKKEI*EIIHFSITMNNKNIL*I*PRN*KVYMTRTL--- 28553 VS ++T+ + +YT++ A+K + + I F++ L VY+T+ + Sbjct 727 VSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYL-------GVYLTKDVKDL 779 Query 28552 -----SV*KRKLKTIIRGCKYLPRSRISRINIVKMAILPKEIYRLNIIPIKIQT*LFKDL 28388 ++++ + K +P S + RINIVKM+ILPK IY N IPIK FKDL Sbjct 780 YKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDL 839 Query 28387 ERAILKIHMKK*YTQDSKTFPNNKRTSGGITIPDLKLYYSAIVKK--WYW*RKRQADQ*N 28214 E+ IL + Q +KT +NK +GGIT+PDL+LYY +IV K WYW + R+ D N Sbjct 840 EKIILHFIWNQKKPQIAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNREVDVWN 899 Query 28213 QIKDPEMNPHTYGHLIF 28163 +I++ EM+P TY +LIF Sbjct 900 RIENQEMDPATYHYLIF 916 Range 24: 910 to 982 Score:73.9 bits(180), Expect:3e-21, Method:Compositional matrix adjust., Identities:32/73(44%), Positives:51/73(69%), Gaps:0/73(0%) Query 72680 TYAHLIFDKETKNIQRKKESIFIKWCHSIWMSVCKKLQIGPYLSRCTKLKCKCFEDLNIK 72501 TY +LIFDK KNIQ K+S+F KWC W+++C++L++ P+LS TK+ +DLN++ Sbjct 910 TYHYLIFDKPIKNIQWGKDSLFNKWCWVNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLR 969 Query 72500 PDTLNLIEHKEGK 72462 +T+ ++E GK Sbjct 970 HETIKILEESAGK 982 Range 25: 981 to 1037 Score:57.4 bits(137), Expect:3e-21, Method:Compositional matrix adjust., Identities:29/57(51%), Positives:36/57(63%), Gaps:0/57(0%) Query 72466 GKGLELIGTGRNFLTRTPMAHALNSGIDKWDLMKLESFCKASDIVNKTN*YPTGWEK 72296 GK LE I G F+ RTP A S I WDL+KL+SFC A +IV+K + P+ WEK Sbjct 981 GKTLEGISLGEYFMRRTPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEK 1037 Range 26: 615 to 797 Score:108 bits(270), Expect:6e-21, Method:Compositional matrix adjust., Identities:77/184(42%), Positives:116/184(63%), Gaps:11/184(5%) Query 29039 VLERSGIQGTYLHII*GIYSKSIANIKLNGEKIKAVPL---IRE*IGKAPHYLFNIILVF 28869 L++ GI+GT+L +I IYSK ANI LNG K+K+ PL R+ +P LFNI++ Sbjct 615 TLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSP-LLFNIVMEV 673 Query 28868 LSRAIRQLK-IKGIQLGKEEFKMSSFMDDIIVYISDPKNSITELLQLTYSFNKVTGYIFN 28692 L+ AIR+ K IKGI +G EE K+S F DD+IVY+ + ++S T+LL++ ++ V+GY N Sbjct 674 LAIAIREEKAIKGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKIN 733 Query 28691 SKNS---LYK**TGQERNLGNNTLFN-NHE**KYL-VNLTKKLKGLYDKNFKCLKKEI-E 28530 + S +Y E+ + ++ F + KYL V LTK +K LY +N++ L+KEI E Sbjct 734 THKSVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAE 793 Query 28529 DNNQ 28518 D N+ Sbjct 794 DVNK 797 Range 27: 928 to 1124 Score:106 bits(265), Expect:2e-20, Method:Compositional matrix adjust., Identities:77/207(37%), Positives:113/207(54%), Gaps:22/207(10%) Query 11197 DSIFNKC*RFNWWSACRRMQIDLFLSPCTKLKSKWIKDLHIKPDMINLIEEKVGKNLKHI 11376 DS+FNK NW + CRR+++D LSP TK+ S WIKDL+++ + I ++EE GK L+ I Sbjct 928 DSLFNKWCWVNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLRHETIKILEESAGKTLEGI 987 Query 11377 GTGKI------SCIE-----HQWLCSKIKN*QVGTHKIAKIL*GKAHGQ*NKMAMQR*VV 11523 G+ IE H W K+K + AK + KA Q ++ + Sbjct 988 SLGEYFMRRTPQAIEAVSKIHYWDLIKLK-----SFCTAKNIVSKASRQPSEWEK----I 1038 Query 11524 FNNPTSDTGLISKIYK*LRKLDSREPNNPTKMGHR-AKQRFSVQESQTAKKRST*NFSTS 11700 F TSD GLI++I++ L+ ++ + +P R K+ FS ++ T K S+S Sbjct 1039 FAGYTSDKGLITRIHRELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMK-KSSSS 1097 Query 11701 FVIREMQIKSTLRIHLTLVRMARIKNS 11781 +IREMQIK+TLR HLT VR+A I S Sbjct 1098 LIIREMQIKTTLRYHLTPVRVAHITKS 1124 Range 28: 1055 to 1256 Score:101 bits(251), Expect:1e-18, Method:Compositional matrix adjust., Identities:70/202(35%), Positives:106/202(52%), Gaps:10/202(4%) Query 11166 ELKKLD---THNAILKWGTEEKRGNS-----IV*RTLKEMFKVLSHQENANQTILRFDLT 11011 ELK ++ T + I W + KR S + + +K+ L +E +T LR+ LT Sbjct 1055 ELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTLRYHLT 1114 Query 11010 YVRMAKIKNSDGSTYS*GCRAQGTLLQCW*ECKLLQTLGKSI*CFHRKLGMAIPQDPDIS 10831 VR+A I S GC +GTLL CW EC L+++ K + R L + +P DP I Sbjct 1115 PVRVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKIDLPFDPIIP 1174 Query 10830 LPG-HISKRCSTIPQRQLINYVIAALFVVVRN*KQSKCPSTEEWLMKVWYVYTTVYF-HL 10657 L G + + S + IAA F++ ++ K+ KCPST EW K+WY+YT Y+ L Sbjct 1175 LLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAAL 1234 Query 10656 *KNKSFLNFTGKWMDLKNFILS 10591 K+ F +F WM+L++ +LS Sbjct 1235 KKDGDFTSFMFTWMELEHILLS 1256 Range 29: 1187 to 1260 Score:99.8 bits(247), Expect:4e-18, Method:Compositional matrix adjust., Identities:45/74(61%), Positives:59/74(79%), Gaps:1/74(1%) Query 32682 YNKDTCSTMFIAALFIIARS*KEPRCPSTEEWIQKMWYIYTMEYYSAI-KNNDFMKFIGK 32858 YNKD C+ MFIAA FIIA+S K+P+CPST EW K+WY+YTMEYY+A+ K+ DF F+ Sbjct 1187 YNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAALKKDGDFTSFMFT 1246 Query 32859 WMELENIIRNDVTQ 32900 WMELE+I+ + V+Q Sbjct 1247 WMELEHILLSKVSQ 1260 Range 30: 1005 to 1235 Score:95.9 bits(237), Expect:5e-17, Method:Compositional matrix adjust., Identities:84/244(34%), Positives:122/244(50%), Gaps:32/244(13%) Query 11426 SRIDKWELIKLQRFCKAKHMVNRTKWQ-----------CKDELSLTILHLILG*YPKYTN 11572 S+I W+LIKL+ FC AK++V++ Q D+ +T +H L K+ N Sbjct 1005 SKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKIFAGYTSDKGLITRIHREL----KHIN 1060 Query 11573 NSGS*TPENQIILLKWGTELNRDSQFRNLKQPRREAPKIFQHPSSSGKCKSNQP*ESISH 11752 + P + W +L R+ K+ R K + SSS + Q ++ + Sbjct 1061 KKRTRDP-----ISGWARDLKRNFS----KEDRHTIYKHMKKSSSSLIIREMQIKTTLRY 1111 Query 11753 *------SEWLGSKTQMLVRMCR-KRTHLHFWWDCKLAQPLWKTVWQFLRMlelvlleyp 11911 + S Q R C K T LH WW+C L + WK VW+ LR L++ L P Sbjct 1112 HLTPVRVAHITKSPNQRCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKIDLPFDP 1171 Query 11912 avlllGIYTKDALT-YNKDICSSMFLAALFILARSWKESRCLSTEEWI*KTWYIYTTNTT 12088 + LLG+Y +D + YNKDIC+ MF+AA FI+A+SWK+ +C ST EW K WY+YT Sbjct 1172 IIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYY 1231 Query 12089 QLLK 12100 LK Sbjct 1232 AALK 1235 Range 31: 1175 to 1260 Score:91.3 bits(225), Expect:1e-15, Method:Compositional matrix adjust., Identities:44/86(51%), Positives:63/86(73%), Gaps:6/86(6%) Query 69590 LMGIYRKDAPI-YSKDTCSTMIIAALFIISREWKQPKCPSTEKWIQKMWYIYTMEYYTAI 69414 L+G+Y +D Y+KD C+ M IAA FII++ WK+PKCPST +W K+WY+YTMEYY A+ Sbjct 1175 LLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAAL 1234 Query 69413 KKN-EFMKF----TELENIILGELTQ 69351 KK+ +F F ELE+I+L +++Q Sbjct 1235 KKDGDFTSFMFTWMELEHILLSKVSQ 1260 Range 32: 566 to 623 Score:79.3 bits(194), Expect:4e-12, Method:Compositional matrix adjust., Identities:37/58(64%), Positives:49/58(84%), Gaps:0/58(0%) Query 54258 IPRVQGSFNIQKSINVIRYINKLKDKNHIIISLHAEKAFDKIQHPFMTKALERSEIQG 54085 IP QG FNI+KSINVI++INKLK+K+H+I+S+ AEKAFD IQHPFM + L++ I+G Sbjct 566 IPGSQGWFNIRKSINVIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEG 623 Range 33: 1198 to 1260 Score:77.8 bits(190), Expect:1e-11, Method:Compositional matrix adjust., Identities:36/63(57%), Positives:50/63(79%), Gaps:1/63(1%) Query 61854 SSLFIIARIWKEHRCPSTEE*IQKMWYIYTMEYYSAI-KNSDFMKFIGKWMELENILLSE 61678 ++ FIIA+ WK+ +CPST E K+WY+YTMEYY+A+ K+ DF F+ WMELE+ILLS+ Sbjct 1198 AAQFIIAKSWKKPKCPSTHEWTSKLWYMYTMEYYAALKKDGDFTSFMFTWMELEHILLSK 1257 Query 61677 VTQ 61669 V+Q Sbjct 1258 VSQ 1260 Range 34: 1054 to 1259 Score:70.5 bits(171), Expect:2e-09, Method:Compositional matrix adjust., Identities:56/218(26%), Positives:96/218(44%), Gaps:27/218(12%) Query 44261 REINSLKRSRMQEIMKK*GIKLNREFTKEESRIPENHLKK*SKSSVIRKMQIKMTP*FHL 44082 RE+ + + R ++ + L R F+KE+ H+KK S S +IR+MQIK T +HL Sbjct 1054 RELKHINKKRTRDPISGWARDLKRNFSKEDRHTIYKHMKKSSSSLIIREMQIKTTLRYHL 1113 Query 44081 SPSKWLRSKIHITAHVGKVVEKRNLPQLLVGLQTGATTLEISLQVP------------QK 43938 +P + AH+ K +R G T L + P + Sbjct 1114 TPVR--------VAHITKSPNQR----CWRGCGGKGTLLHCWWECPLIRSFWKDVWRILR 1161 Query 43937 IGNIYIPEDPL--YLSWAYTQKMPHHATGVCVPLVHSGFICNSQKL*QPTCPTMEEWIGK 43764 I +P DP+ L + + +C + + ++ +P CP+ EW K Sbjct 1162 DLKIDLPFDPIIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSK 1221 Query 43763 T*FICIRKYYLSI-DNKDILSFASRWMELENVILSEVT 43653 ++ +YY ++ + D SF WMELE+++LS+V+ Sbjct 1222 LWYMYTMEYYAALKKDGDFTSFMFTWMELEHILLSKVS 1259 Range 35: 918 to 969 Score:49.3 bits(116), Expect:6e-09, Method:Compositional matrix adjust., Identities:26/52(50%), Positives:32/52(61%), Gaps:0/52(0%) Query 13465 KDAKSLQWQK*MIFNK*C*SN*KTICRRKKIDPYSSPCTKFKSK*IKDFKLK 13310 K K++QW K +FNK C N ICRR K+DP+ SP TK S IKD L+ Sbjct 918 KPIKNIQWGKDSLFNKWCWVNWLAICRRLKLDPHLSPLTKIDSHWIKDLNLR 969 Range 36: 1005 to 1038 Score:40.0 bits(92), Expect:6e-09, Method:Compositional matrix adjust., Identities:17/34(50%), Positives:26/34(76%), Gaps:0/34(0%) Query 13200 STIDKWALVKLKGFCKSKDIVNRAKWQPTDYERI 13099 S I W L+KLK FC +K+IV++A QP+++E+I Sbjct 1005 SKIHYWDLIKLKSFCTAKNIVSKASRQPSEWEKI 1038 Range 37: 876 to 948 Score:63.9 bits(154), Expect:2e-07, Method:Compositional matrix adjust., Identities:29/77(38%), Positives:46/77(59%), Gaps:4/77(5%) Query 70909 LFFSAFFVKDQVSVSLYWYRDRNTGQRNRIQDPEIKLQTYRHLIFDKEDKKIQWKTDNSF 71088 L++ + +K + YW+++R NRI++ E+ TY +LIFDK K IQW D+ F Sbjct 876 LYYKSIVIK----TAWYWHKNREVDVWNRIENQEMDPATYHYLIFDKPIKNIQWGKDSLF 931 Query 71089 KN*CWSNWQTVCRKMKI 71139 CW NW +CR++K+ Sbjct 932 NKWCWVNWLAICRRLKL 948 Range 38: 1171 to 1222 Score:57.8 bits(138), Expect:2e-05, Method:Compositional matrix adjust., Identities:27/52(52%), Positives:37/52(71%), Gaps:1/52(1%) Query 43227 PSYTLLDIHLKDAPT-YNKDICSTMFISALFLIAKEWKQTKCPSTEKWIQKM 43075 P LL ++ +D + YNKDIC+ MFI+A F+IAK WK+ KCPST +W K+ Sbjct 1171 PIIPLLGLYPEDQKSQYNKDICTRMFIAAQFIIAKSWKKPKCPSTHEWTSKL 1222 Range 39: 1128 to 1213 Score:47.8 bits(112), Expect:0.017, Method:Compositional matrix adjust., Identities:29/86(34%), Positives:41/86(47%), Gaps:5/86(5%) Query 44029 RLWR----KGTFLNCWWDCKLVQPLWKSVCRFLRKLEIYIYLKTHYTSPGHIPRKCPTML 43862 R WR KGT L+CWW+C L++ WK V R LR L+I + G P + Sbjct 1128 RCWRGCGGKGTLLHCWWECPLIRSFWKDVWRILRDLKIDLPFDPIIPLLGLYPEDQKSQY 1187 Query 43861 QEYV-FHLFIVALFVTVRSCNNPHVP 43787 + + +FI A F+ +S P P Sbjct 1188 NKDICTRMFIAAQFIIAKSWKKPKCP 1213 Range 40: 972 to 1037 Score:47.0 bits(110), Expect:0.033, Method:Compositional matrix adjust., Identities:25/66(38%), Positives:39/66(59%), Gaps:3/66(4%) Query 35561 TLNLIEEKVRKVLELTGIGGIFLN*TPMTYTLRSRI---DLTKQESFCKAKDIVNRENQK 35731 T+ ++EE K LE +G F+ TP S+I DL K +SFC AK+IV++ +++ Sbjct 972 TIKILEESAGKTLEGISLGEYFMRRTPQAIEAVSKIHYWDLIKLKSFCTAKNIVSKASRQ 1031 Query 35732 PTAWGK 35749 P+ W K Sbjct 1032 PSEWEK 1037 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Golden hamster intracisternal A-particle H18] Sequence ID: P04026.1 Length: 863 Range 1: 108 to 387 Score:301 bits(770), Expect:0.0, Method:Compositional matrix adjust., Identities:150/315(48%), Positives:207/315(65%), Gaps:35/315(11%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPL P+D +FAFT+PS+N+ EPDK +QW VL QGMANSPT+CQLYVQ+AL+PI Sbjct 108 KDCFFSIPLYPRDRPRFAFTIPSLNHMEPDKRFQWKVLPQGMANSPTICQLYVQEALEPI 167 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R QF L +IH+MDDIL+ K+ L+ A+ +V L+ L IA EKVQ+ G +LG+ Sbjct 168 RKQFTSLIVIHYMDDILICHKELDVLQKAFPMLVAELKQWGLEIASEKVQIADTGLFLGS 227 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 KITP +I PQKIE+RKDHL+TL+DFQKLLG INW++P++K+P+ DL+PL+++L+G+ ++ Sbjct 228 KITPKNIVPQKIEIRKDHLQTLNDFQKLLGDINWLRPFLKIPSADLKPLFDLLEGEPHIS 287 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYP 23265 SPR T A +L+ VE+ L++A + Sbjct 288 SPRKFTPAAHRALQMVEEALQEAQITTN-------------------------------- 315 Query 23264 HISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILC 23085 SP K +++YP AVAQ +K+ + HFG P +I+PYTA QV+TL A DWA+L Sbjct 316 --SPAKIIDWYPDAVAQ-PRSRIKAAVTHFGRDPDSLIVPYTAAQVQTLAATSSDWAVLV 372 Query 23084 CSFDGEFDNHYPKDP 23040 SF G+ DNH+PK P Sbjct 373 TSFSGQIDNHFPKHP 387 Range 2: 598 to 808 Score:278 bits(710), Expect:0.0, Method:Compositional matrix adjust., Identities:132/212(62%), Positives:157/212(74%), Gaps:3/212(1%) Query 22407 VRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGK 22228 +R L++WQMDVTHI FG L+Y HVSVDTCSG++ AT +TGEKA I HCLE W+AWGK Sbjct 598 IRPLQMWQMDVTHIPSFGRLQYVHVSVDTCSGVMFATPLTGEKASYVIQHCLEAWSAWGK 657 Query 22227 SDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGI 22048 +KTDNGPAYT++ F FC+ M V H TGLPYNPQGQGIVE+AHRTLK L KQKG I Sbjct 658 P-RIKTDNGPAYTSQKFRQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKSYLIKQKGSI 716 Query 22047 --AYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGPD 21874 PR +S+ALFT NFL DA G +AADRH+ VKWKDVLT W GPD Sbjct 717 EDVLPSVPRVAVSMALFTLNFLNCDAQGHTAADRHSLEPDRPKEMVKWKDVLTDLWKGPD 776 Query 21873 PVILRSRGAVCVFP*NQDNPIWVPERLTRKLP 21778 P+++RSRGAVCVFP ++NP+W+PERLTR+ P Sbjct 777 PILIRSRGAVCVFPQEEENPLWIPERLTRRAP 808 Range 3: 442 to 597 Score:146 bits(369), Expect:0.0, Method:Compositional matrix adjust., Identities:71/156(46%), Positives:97/156(62%), Gaps:0/156(0%) Query 22873 PQITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLELQKLIW 22694 PQ+ EC IVLEV + F N++SDS+YVV V LEIAG IRS++ V ++Q + Sbjct 442 PQVVECLIVLEVLEAFPGPLNIVSDSSYVVNAVNLLEIAGIIRSSSRVANIFQKIQAALL 501 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R+ FI H+R H+ LPGPM+ N L D +T + +EFH++FHV A TL Sbjct 502 NRRFPVFITHVRAHSGLPGPMSLGNDLADKATKLVATALSTHAQAAKEFHKRFHVTAETL 561 Query 22513 QQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRG 22406 +++F +SR AR +V CQNC +F P P +GINPRG Sbjct 562 RRRFALSRKEAREIVTQCQNCCEFLPTPHMGINPRG 597 Range 4: 1 to 112 Score:137 bits(345), Expect:0.0, Method:Compositional matrix adjust., Identities:76/112(68%), Positives:89/112(79%), Gaps:0/112(0%) Query 24306 LGAIEGGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVI 24127 LGA+E PI WKTEE +W+ Q PLSSEKL A LV EQ +LGH++PSTSPWNT IFVI Sbjct 1 LGAVEASRPIPWKTEEPLWVSQWPLSSEKLEAVTRLVQEQERLGHLEPSTSPWNTPIFVI 60 Query 24126 KKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 KKKS KW+L HDLRAIN+QM + G +QRGLP LS++P DW +IIIDIKDCF Sbjct 61 KKKSGKWRLLHDLRAINNQMHLFGPVQRGLPLLSALPQDWKLIIIDIKDCFF 112 Range 5: 391 to 444 Score:47.8 bits(112), Expect:0.0, Method:Compositional matrix adjust., Identities:23/55(42%), Positives:35/55(63%), Gaps:1/55(1%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMVDSQEPVLIQYSPGTPKL 22864 F + FP+VTA +PL +YTDGSKTG+GAY+V + + QY+ +P++ Sbjct 391 FALNQAIVFPQVTAKDPLPDGTVVYTDGSKTGLGAYVVKDRV-ISKQYNETSPQV 444 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] Sequence ID: P51517.2 Length: 1768 Range 1: 1023 to 1334 Score:275 bits(704), Expect:0.0, Method:Compositional matrix adjust., Identities:136/312(44%), Positives:197/312(63%), Gaps:0/312(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPL P D +FAF+LPS N ++P K YQW VL QGMANSPT+CQ YV A++P+ Sbjct 1023 KDCFFTIPLQPVDQKRFAFSLPSTNFKQPMKRYQWKVLPQGMANSPTLCQKYVAAAIEPV 1082 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + ++ IIH+MDDIL++ K + +A++ + L L IAPEKVQ+ YLG Sbjct 1083 RKSWAQMYIIHYMDDILIAGKLGEQVLQCFAQLKQALTTTGLQIAPEKVQLQDPYTYLGF 1142 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I+ QK +R+D L+TL+DFQKLLG INW++PY+ + DL+PL++ILKGDS Sbjct 1143 QINGPKITNQKAVIRRDKLQTLNDFQKLLGDINWLRPYLHLTTGDLKPLFDILKGDSNPN 1202 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYP 23265 SPR+L++ A SL+KVE + + + + + + I T TG+ WQ P++W++ Sbjct 1203 SPRSLSEAALASLQKVETAIAEQFVTQIDYTQPLTFLIFNTTLTPTGLFWQNNPVMWVHL 1262 Query 23264 HISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILC 23085 SP K L Y A+A L +LG + ++FG+ P II PY+ +Q+ L + W I C Sbjct 1263 PASPKKVLLPYYDAIADLIILGRDNSKKYFGLEPSTIIQPYSKSQIHWLMQNTETWPIAC 1322 Query 23084 CSFDGEFDNHYP 23049 S+ G DNHYP Sbjct 1323 ASYAGNIDNHYP 1334 Range 2: 636 to 861 Score:195 bits(496), Expect:0.0, Method:Compositional matrix adjust., Identities:107/228(47%), Positives:140/228(61%), Gaps:3/228(1%) Query 25129 RRATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVP 24950 RA+ GSAGLDL STT +LTP+MG Q + T GPLP +T GL+LGR S+ +KGLQI P Sbjct 636 NRASPGSAGLDLCSTTHTVLTPEMGPQTLATGVYGPLPPNTFGLILGRGSTTVKGLQIYP 695 Query 24949 GVIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGS 24770 GVID DY G K++ + I I G+RIAQL+LLP L ++ RGD GS S Sbjct 696 GVIDNDYTGEFKIMARAISSIITIPQGERIAQLVLLPLLRTAHKIQHPYRGDKNFGS--S 753 Query 24769 RFAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGY 24590 ++ P L L ++G +F GL+DTGAD ++I DWP WPT + L G+G Sbjct 754 DIFWVQPITHQKPSLVLWLDGKAFTGLIDTGADVTIIKQEDWPSHWPTTETLTNLRGIGQ 813 Query 24589 EMAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDMRL 24449 P SSK LTWKD E SG I P++I ++PV LWGRD+L + + + Sbjct 814 SNNPRQSSKYLTWKDKENNSGLIKPFVIPNLPVNLWGRDLLSQMKIMM 861 Range 3: 924 to 1027 Score:114 bits(284), Expect:0.0, Method:Compositional matrix adjust., Identities:62/104(60%), Positives:77/104(74%), Gaps:0/104(0%) Query 24282 PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQ 24103 PITWK++E +W+ Q PL+ EKL AA +LV EQLQ GHI S SPWNT IFVIKKKS KW+ Sbjct 924 PITWKSDEPVWVDQWPLTQEKLAAAQQLVQEQLQAGHIIESNSPWNTPIFVIKKKSGKWR 983 Query 24102 L*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 L DLRA+N+ M +MG +Q GLP +IP + I+ID+KDCF Sbjct 984 LLQDLRAVNATMVLMGALQPGLPSPVAIPQGYFKIVIDLKDCFF 1027 Range 4: 1378 to 1563 Score:101 bits(252), Expect:0.0, Method:Composition-based stats., Identities:57/187(30%), Positives:96/187(51%), Gaps:4/187(2%) Query 22912 FSRTSINSIQSRH--PQITECKIVLEVFKRF-HDSFNLISDSAYVVKTVRSLEIAGPIRS 22742 F +T++ ++ H Q+ E + ++ V F H + N+ +DSAY+ ++ LE I+ Sbjct 1378 FEKTTVR-FKTSHTSAQLVELQALIAVLSAFPHRALNVYTDSAYLAHSIPLLETVSHIKH 1436 Query 22741 TTTVCQTLLELQKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVD 22562 + + L+ Q+LI+ R F++ HIR H+ LPGP++ N + D +T + Sbjct 1437 ISDTAKFFLQCQQLIYNRSIPFYLGHIRAHSGLPGPLSQGNHITDLATKVVATTLTTNLT 1496 Query 22561 LTREFHQKFHVPAFTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRGPSAKTLAD 22382 + H H+ A +L+ FKI+R AR +V C CV + P+P G+NP+G L Sbjct 1497 EAQTAHALHHLNAQSLRLMFKITREQARQIVKQCPTCVTYLPIPHFGVNPKGLVPNMLWQ 1556 Query 22381 GCHTHIS 22361 TH S Sbjct 1557 MDVTHYS 1563 Range 5: 1341 to 1379 Score:42.4 bits(98), Expect:0.0, Method:Compositional matrix adjust., Identities:17/39(44%), Positives:24/39(61%), Gaps:0/39(0%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMVD 22912 F H V FP++ + PL AL ++TDGS TG+ AY + Sbjct 1341 FCKLHAVVFPRIISKTPLDNALLVFTDGSSTGIAAYTFE 1379 Range 6: 872 to 906 Score:33.5 bits(75), Expect:0.0, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:19/35(54%), Gaps:0/35(0%) Query 24416 MIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLG 24312 M+ GY P KGLGK G P+ + + DR G G Sbjct 872 MLAQGYSPGKGLGKREDGILQPIPNSGQLDRKGFG 906 Range 7: 297 to 599 Score:221 bits(563), Expect:4e-55, Method:Compositional matrix adjust., Identities:123/311(40%), Positives:168/311(54%), Gaps:25/311(8%) Query 26150 FPVFLDVNGQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWG 25983 FPV ++GQ +HH DF IK+L +V YG A + +A +E++ LTP DW Sbjct 297 FPVTETMDGQGQAWRHHNGFDFTVIKELKTAVSQYGATAPYTLAIVESIADNWLTPTDWN 356 Query 25982 SLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTG 25809 +L RA LS G +L WKS +EN A N +G WD DML G G +A Q Sbjct 357 TLVRAVLSGGDHLIWKSEFFENCRDTAKRNQQAG----NGWDFDMLTGSGNYANTDAQMQ 412 Query 25808 YPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPD 25629 Y +++QI A AW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG+ + Sbjct 413 YDPGLFAQIQAAATNAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGNAE 472 Query 25628 TVMPLIKQLVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA------- 25473 + +KQL YE C AI PY+ K L ++++C +I GP GLA A Sbjct 473 AGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQT 531 Query 25472 ---MIQLKRKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANEC 25302 ++ K K CF+CG+KGH+ C D S + S+ P LCPRCK+G HWANEC Sbjct 532 VKDLLNNKNKD-RGGCFKCGKKGHFAKDCRDHSNKNPESK--VPGLCPRCKRGKHWANEC 588 Query 25301 RSIKDLDGRTL 25269 +S D G L Sbjct 589 KSKTDSQGNPL 599 Range 8: 1554 to 1760 Score:216 bits(549), Expect:2e-53, Method:Compositional matrix adjust., Identities:111/208(53%), Positives:140/208(67%), Gaps:5/208(2%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH S+FG LKY HVS+DT SG + ATL TGE ++ I+H L ++ G+ +K Sbjct 1554 LWQMDVTHYSEFGKLKYVHVSIDTFSGFLVATLQTGEATKHVIAHLLHCFSIIGQPIHIK 1613 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGR- 22036 TDNGP YT+ +F AFC + +KHT G+PYNPQGQGIVE+AH +LK L+K K G Y Sbjct 1614 TDNGPGYTSSNFRAFCSKLHIKHTFGIPYNPQGQGIVERAHLSLKNTLEKIKKGEWYPTQ 1673 Query 22035 -TPREQLSLALFTRNFLILDAHGCSAADR--HAATKPMTNADVKWKDVLTGEWCGPDPVI 21865 +PR L+ ALF NFL LDA SAADR H ++K A VKWKD L W GPDPV+ Sbjct 1674 GSPRNILNHALFILNFLNLDAQNKSAADRFWHTSSK-KEYAMVKWKDPLDNTWHGPDPVL 1732 Query 21864 LRSRGAVCVFP*NQDNPIWVPERLTRKL 21781 + RG+VCV+ D W+PERL R++ Sbjct 1733 IWGRGSVCVYSQTHDAARWLPERLVRQV 1760 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Jaagsiekte sheep retrovirus] Sequence ID: P31623.2 Length: 1726 Range 1: 978 to 1291 Score:273 bits(698), Expect:0.0, Method:Compositional matrix adjust., Identities:141/314(45%), Positives:197/314(62%), Gaps:0/314(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K FY+IPLAPQD +FAF+LPS+N +EP + YQW VL QGM NSPT+CQ +V A+ P+ Sbjct 978 KDCFYTIPLAPQDCKRFAFSLPSVNFKEPMQRYQWRVLPQGMTNSPTLCQKFVATAIAPV 1037 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R +FP+L ++H+MDDILL+ D L A++ + + L N L IA EK+Q YLG Sbjct 1038 RQRFPQLYLVHYMDDILLAHTDEHLLYQAFSILKQHLSLNGLVIADEKIQTHFPYNYLGF 1097 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 + P + Q ++L+ DHLKTL+DFQKLLG INWI+PY+K+P LQPL++ILKGDS Sbjct 1098 SLYPRVYNTQLVKLQTDHLKTLNDFQKLLGDINWIRPYLKLPTYTLQPLFDILKGDSDPA 1157 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYP 23265 SPR L+ + R +L+ +E+ + + + + L IL T TGVL+Q PL WIY Sbjct 1158 SPRTLSLEGRTALQSIEEAIRQQQITYCDYQRSWGLYILPTPRAPTGVLYQDKPLRWIYL 1217 Query 23264 HISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILC 23085 +P K L Y VA++ G IQ+FG+ P I +PY Q + L D+W+I Sbjct 1218 SATPTKHLLPYYELVAKIIAKGRHEAIQYFGMEPPFICVPYALEQQDWLFQFSDNWSIAF 1277 Query 23084 CSFDGEFDNHYPKD 23043 ++ G+ +HYP D Sbjct 1278 ANYPGQITHHYPSD 1291 Range 2: 247 to 560 Score:207 bits(528), Expect:0.0, Method:Compositional matrix adjust., Identities:127/324(39%), Positives:172/324(53%), Gaps:31/324(9%) Query 26177 EVWK*LGLSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLT 25998 EV L+FPVF + N Q+++E + FK +K+L + YG A F IA IE+LG L Sbjct 247 EVVSDFSLAFPVF-ENNNQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIESLGTQALP 305 Query 25997 PGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF-AL 25821 P DW ARACLS G YL WKS +E A +N G +ML+G G + A Sbjct 306 PNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGIQT----SYEMLIGEGPYQAT 361 Query 25820 D-QTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKI 25644 D Q + Y+QI+ A +AWK LP+ + +L+KV QGP EP+ DFVA ++++ KI Sbjct 362 DTQLNFLPGAYAQISNAARQAWKKLPSSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKI 421 Query 25643 FGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAM 25470 D M L KQL +E C A+ PY+ KG L ++++C +I GP G+A AA Sbjct 422 MSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADI-GPSYMQGIAMAAA 480 Query 25469 IQLK-----------------RKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLC 25341 +Q K +KS CF CG+ GH + CP + N+ P LC Sbjct 481 LQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNT----PNLC 536 Query 25340 PRCKKGNHWANECRSIKDLDGRTL 25269 PRCKKG HWA +CRS D+ G L Sbjct 537 PRCKKGKHWARDCRSKTDVQGNPL 560 Range 3: 572 to 825 Score:199 bits(506), Expect:0.0, Method:Compositional matrix adjust., Identities:126/271(46%), Positives:163/271(60%), Gaps:19/271(7%) Query 25225 SPGPSN-IWGSTERQAGTRQTEALAFSSPSKGPRRATKGSAGLDLHSTTRLMLTPQMGVQ 25049 +PGP +WG+T AG+++T A RAT+GSAGLDL +T+ +LTP+MGVQ Sbjct 572 APGPETMLWGNT---AGSKRTIA--------DLCRATRGSAGLDLCATSYTVLTPEMGVQ 620 Query 25048 PIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVTSPQGITAISPG 24869 + T GPLP TVGLLLGRSS++LKG+ I PGVID DY G +K+L ++P I I+ G Sbjct 621 TLATGVFGPLPPGTVGLLLGRSSASLKGILIHPGVIDSDYTGEIKILASAPNKIIVINAG 680 Query 24868 DRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEPGNCPMLTLTVEGCSFLGL 24689 RIAQLLL+P L NR R D G GS+ + + E P L L + F G+ Sbjct 681 QRIAQLLLVP-LVIQGKTINRDRQDKGFGSSDAYWVQNVTEAR--PELELRINANFFRGV 737 Query 24688 LDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGKITPYI 24509 LDTGAD SVIS WP WP Q + L G+G P SS LTWKD +G +G+ PYI Sbjct 738 LDTGADISVISDKYWPTTWPKQMAISTLQGIGQTTNPEQSSSLLTWKDKDGHTGQFKPYI 797 Query 24508 I-DIPVTLWGRDVLINLDMRLTNEYSHRPRI 24419 + +PV LWGRD+L + + L YS P + Sbjct 798 LPYLPVNLWGRDILSKMGVYL---YSPSPTV 825 Range 4: 879 to 981 Score:114 bits(285), Expect:0.0, Method:Compositional matrix adjust., Identities:63/103(61%), Positives:78/103(75%), Gaps:0/103(0%) Query 24282 PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQ 24103 PI WK+EE +W+ Q PL+ EKL+AA +LV EQL+LGHI+PSTS WN+ IFVIKKKS KW+ Sbjct 879 PIDWKSEEPVWVDQWPLTQEKLSAAQQLVQEQLRLGHIEPSTSAWNSPIFVIKKKSGKWR 938 Query 24102 L*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCF 23974 L DLR +N M MG +Q GLP S+IP II+ID+KDCF Sbjct 939 LLQDLRKVNETMMHMGALQPGLPTPSAIPDKSYIIVIDLKDCF 981 Range 5: 1339 to 1515 Score:99.8 bits(247), Expect:0.0, Method:Compositional matrix adjust., Identities:66/185(36%), Positives:97/185(52%), Gaps:10/185(5%) Query 22912 FSRTSINSIQSRHPQITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTT 22733 +++TS +S Q + E V + SFNL +DS+YVV ++ +E PI TT+ Sbjct 1339 YAQTSFSSAQ-----VVELFAVHQALLTVPTSFNLFTDSSYVVGALQMIETV-PIIGTTS 1392 Query 22732 --VCQTLLELQKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDL 22559 V +Q+++ R++ F HIR H+ LPG + N D T + +F + +D Sbjct 1393 PEVLNLFTLIQQVLHCRQHPCFFGHIRAHSTLPGALVQGNHTADVLTKQ--VFFQSAIDA 1450 Query 22558 TREFHQKFHVPAFTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRGPSAKTLADG 22379 R+ H H + +L+ +FKISR AAR +V SC C QF LPQ G+NPRG L Sbjct 1451 ARKSHDLHHQNSHSLRLQFKISREAARQIVKSCSTCPQFFVLPQYGVNPRGLRPNHLWQT 1510 Query 22378 CHTHI 22364 THI Sbjct 1511 DVTHI 1515 Range 6: 823 to 863 Score:39.7 bits(91), Expect:0.0, Method:Compositional matrix adjust., Identities:18/41(44%), Positives:24/41(58%), Gaps:0/41(0%) Query 24434 PQAKDMMIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLG 24312 P D+M+ G +P +GLGK QG P+ L +DR GLG Sbjct 823 PTVTDLMLDQGLLPNQGLGKQHQGIILPLDLKPNQDRKGLG 863 Range 7: 1296 to 1336 Score:37.4 bits(85), Expect:0.0, Method:Compositional matrix adjust., Identities:15/41(37%), Positives:23/41(56%), Gaps:0/41(0%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMVDSQ 22906 F + H FPK+ +P+ A I+TDGS G A +++ Q Sbjct 1296 FASSHAFIFPKIVRRQPIPEATLIFTDGSSNGTAALIINHQ 1336 Range 8: 1502 to 1710 Score:218 bits(555), Expect:4e-54, Method:Compositional matrix adjust., Identities:109/213(51%), Positives:141/213(66%), Gaps:10/213(4%) Query 22407 VRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGK 22228 +R LWQ DVTHI QFG LKY HVS+DT S + A+L TGE R+ I H L ++ G Sbjct 1502 LRPNHLWQTDVTHIPQFGRLKYVHVSIDTFSNFLMASLHTGESTRHCIQHLLFCFSTSGI 1561 Query 22227 SDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLK-ELLQKQKGG 22051 +LKTDNGP YT++SF FC + Q+ H TG+PYNPQGQGIVE+AH+ +K +LL+++KG Sbjct 1562 PQTLKTDNGPGYTSRSFQRFCLSFQIHHKTGIPYNPQGQGIVERAHQRIKHQLLKQKKGN 1621 Query 22050 IAYGRTPREQLSLALFTRNFLILDAHGCSAA-----DRHAATKPMTNADVKWKDVLTGEW 21886 Y +P L+ AL+ NFL LD G SAA +R + KP+ V+WKD LT W Sbjct 1622 ELYSPSPHNALNHALYVLNFLTLDTEGNSAAQRFWGERSSCKKPL----VRWKDPLTNLW 1677 Query 21885 CGPDPVILRSRGAVCVFP*NQDNPIWVPERLTR 21787 GPDPV++ RG VCVFP + + P W+PERL R Sbjct 1678 YGPDPVLIWGRGHVCVFPQDAEAPRWIPERLVR 1710 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr180; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mason-Pfizer monkey virus] Sequence ID: P07572.2 Length: 1771 Range 1: 1026 to 1339 Score:270 bits(690), Expect:0.0, Method:Compositional matrix adjust., Identities:138/314(44%), Positives:194/314(61%), Gaps:0/314(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPL P D +FAF+LPS N +EP + +QW VL QGMANSPT+CQ YV A+ + Sbjct 1026 KDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSPTLCQKYVATAIHKV 1085 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + ++ IIH+MDDIL++ KD + + ++ + L L IAPEKVQ+ YLG Sbjct 1086 RHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQLKQELTAAGLHIAPEKVQLQDPYTYLGF 1145 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 ++ I+ QK +RKD L+TL+DFQKLLG INW++PY+K+ DL+PL++ LKGDS Sbjct 1146 ELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTTGDLKPLFDTLKGDSDPN 1205 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYP 23265 S R+L+K+A SL KVE + + + ++ I T TG+ WQ P++WI+ Sbjct 1206 SHRSLSKEALASLEKVETAIAEQFVTHINYSLPLIFLIFNTALTPTGLFWQDNPIMWIHL 1265 Query 23264 HISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILC 23085 SP K L Y A+A L +LG ++FGI P II PY+ +Q++ L + W I C Sbjct 1266 PASPKKVLLPYYDAIADLIILGRDHSKKYFGIEPSTIIQPYSKSQIDWLMQNTEMWPIAC 1325 Query 23084 CSFDGEFDNHYPKD 23043 SF G DNHYP + Sbjct 1326 ASFVGILDNHYPPN 1339 Range 2: 1557 to 1763 Score:221 bits(564), Expect:0.0, Method:Compositional matrix adjust., Identities:112/207(54%), Positives:139/207(67%), Gaps:3/207(1%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMDVTH S+FGNLKY HVS+DT SG + ATL TGE ++ I+H L ++ G +K Sbjct 1557 IWQMDVTHYSEFGNLKYIHVSIDTFSGFLLATLQTGETTKHVITHLLHCFSIIGLPKQIK 1616 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGR- 22036 TDNGP YT+K+F FC T+Q+KH TG+PYNPQGQGIVE+AH +LK ++K K G Y R Sbjct 1617 TDNGPGYTSKNFQEFCSTLQIKHITGIPYNPQGQGIVERAHLSLKTTIEKIKKGEWYPRK 1676 Query 22035 -TPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN-ADVKWKDVLTGEWCGPDPVIL 21862 TPR L+ ALF NFL LD SAADR P A VKWKD L W GPDPV++ Sbjct 1677 GTPRNILNHALFILNFLNLDDQNKSAADRFWHNNPKKQFAMVKWKDPLDNTWHGPDPVLI 1736 Query 21861 RSRGAVCVFP*NQDNPIWVPERLTRKL 21781 RG+VCV+ D W+PERL R++ Sbjct 1737 WGRGSVCVYSQTYDAARWLPERLVRQV 1763 Range 3: 927 to 1030 Score:112 bits(280), Expect:0.0, Method:Compositional matrix adjust., Identities:61/104(59%), Positives:79/104(75%), Gaps:0/104(0%) Query 24282 PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQ 24103 PITWK++E +W+ Q PL+++KL AA +LV EQL+ GHI S+SPWNT IFVIKKKS KW+ Sbjct 927 PITWKSDEPVWVDQWPLTNDKLAAAQQLVQEQLEAGHITESSSPWNTPIFVIKKKSGKWR 986 Query 24102 L*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 L DLRA+N+ M +MG +Q GLP +IP + IIID+KDCF Sbjct 987 LLQDLRAVNATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFF 1030 Range 4: 1389 to 1551 Score:97.8 bits(242), Expect:0.0, Method:Composition-based stats., Identities:54/168(32%), Positives:88/168(52%), Gaps:6/168(3%) Query 22906 RTSINSIQSRHPQITECKIVLEVFKRF-HDSFNLISDSAYVVKTVRSLEIAGPIRSTTTV 22730 +T++NS Q+ E + ++ V F + N+ +DSAY+ ++ LE I+ + Sbjct 1389 QTNLNS-----AQLVELQALIAVLSAFPNQPLNIYTDSAYLAHSIPLLETVAQIKHISET 1443 Query 22729 CQTLLELQKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTRE 22550 + L+ Q+LI+ R F+I H+R H+ LPGP+A N D +T ++ + Sbjct 1444 AKLFLQCQQLIYNRSIPFYIGHVRAHSGLPGPIAQGNQRADLATKIVASNINTNLESAQN 1503 Query 22549 FHQKFHVPAFTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRG 22406 H H+ A TL+ F I R AR +V C CV + P+P +G+NPRG Sbjct 1504 AHTLHHLNAQTLRLMFNIPREQARQIVKQCPICVTYLPVPHLGVNPRG 1551 Range 5: 1344 to 1381 Score:39.7 bits(91), Expect:0.0, Method:Compositional matrix adjust., Identities:16/38(42%), Positives:24/38(63%), Gaps:0/38(0%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMV 22915 F H FP++ + PL+ AL ++TDGS TG+ AY + Sbjct 1344 FCKLHTFVFPQIISKTPLNNALLVFTDGSSTGMAAYTL 1381 Range 6: 12 to 608 Score:231 bits(590), Expect:1e-112, Method:Compositional matrix adjust., Identities:180/609(30%), Positives:263/609(43%), Gaps:81/609(13%) Query 26870 LSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG---KDLDRETS 26700 + L++ L R +K++ LL F D PWF G++ ++ W +VG +D Sbjct 12 VEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFG 71 Query 26699 EGKLKPGKKLLWHMVHACLEDKQCEEAVRTGQKILTEQQESMSegekvlkegkkrkggke 26520 K+ W+++ ++ K+ V E +S S+ + Sbjct 72 PEKVPVTAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLTKTSQNPDLDLIS 131 Query 26519 vkektektkeRIDRDRGNNQDLETKKIYPSLKALTLGMSSDSELSDNDLVDLEAEAARYE 26340 + E K +D+G + + K+ L A T D S+ D LE EAA+Y Sbjct 132 LDSDDEGAKSSSLQDKGLSSTKKPKRFPVLLTAQTSKDPEDPNPSEVDWDGLEDEAAKY- 190 Query 26339 KEIYHPDWP-----------------HVYAMQEQAKELDEKaiipmappapPYNFQC--- 26220 ++PDWP V A+ +EL EK Q Sbjct 191 ---HNPDWPPFLTRPPPYNKATPSAPTVMAVVNPKEELKEKIAQLEEQIKLEELHQALIS 247 Query 26219 ---------QRMVKP--AGGTSFCPEVWK*LGLS------------------FPVFLDVN 26127 + + P AGG S P W + FPV V+ Sbjct 248 KLQKLKTGNETVTHPDTAGGLSRTPH-WPGQHIPKGKCCASREKEEQIPKDIFPVTETVD 306 Query 26126 GQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLS 25959 GQ +HH DF IK+L + YG A + +A +E++ LTP DW +L RA LS Sbjct 307 GQGQAWRHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLS 366 Query 25958 PGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTGYPDLVYSQ 25785 G +L WKS +EN A N +G WD DML G G ++ Q Y +++Q Sbjct 367 GGDHLLWKSEFFENCRDTAKRNQQAG----NGWDFDMLTGSGNYSSTDAQMQYDPGLFAQ 422 Query 25784 INEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQ 25605 I A KAW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG + + +KQ Sbjct 423 IQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQ 482 Query 25604 LVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA----------MIQLK 25458 L YE C AI PY+ K L ++++C +I GP GLA A + K Sbjct 483 LAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQTVKDFLNNK 541 Query 25457 RKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANECRSIKDLDG 25278 K CF+CG+KGH+ C + + +N+ P P LCPRCK+G HWANEC+S D G Sbjct 542 NKEKGGCCFKCGKKGHFAKNCHEHA--HNNAEPKVPGLCPRCKRGKHWANECKSKTDNQG 599 Query 25277 RTLATGYGG 25251 + G Sbjct 600 NPIPPHQGN 608 Range 7: 606 to 864 Score:205 bits(521), Expect:1e-112, Method:Compositional matrix adjust., Identities:116/271(43%), Positives:159/271(58%), Gaps:18/271(6%) Query 25243 QKNRQTSPGP---SNIWGSTERQAGTRQTEALAFSSPSKGPRRATKGSAGLDLHSTTRLM 25073 Q NR P P +++WGS + +Q P RAT GSAGLDL ST+ + Sbjct 606 QGNRVEGPAPGPETSLWGSQLCSSQQKQ--------PISKLTRATPGSAGLDLCSTSHTV 657 Query 25072 LTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVTSPQ 24893 LTP+MG Q + T GPLP +T GL+LGRSS +KGLQ+ PGVID DY G +K++ + Sbjct 658 LTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVN 717 Query 24892 GITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEPGNC--PMLTL 24719 I +S G+RIAQL+LLP + + RG G GS+ + ++P C P LTL Sbjct 718 NIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIYW----VQPITCQKPSLTL 773 Query 24718 TVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAE 24539 ++ F GL+DTGAD ++I + DWPP WP + L G+G P SSK LTW+D E Sbjct 774 WLDDKMFTGLIDTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKE 833 Query 24538 GRSGKITPYII-DIPVTLWGRDVLINLDMRL 24449 SG I P++I ++PV LWGRD+L + + + Sbjct 834 NNSGLIKPFVIPNLPVNLWGRDLLSQMKIMM 864 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 1] Sequence ID: P04025.2 Length: 1772 Range 1: 1027 to 1340 Score:261 bits(666), Expect:0.0, Method:Compositional matrix adjust., Identities:133/314(42%), Positives:192/314(61%), Gaps:0/314(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPL P D +FAF+LPS N +EP + +QW VL Q MANSPT+CQ YV A+ + Sbjct 1027 KDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQRMANSPTLCQKYVATAIHKV 1086 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + ++ IIH+MDDIL++ KD + + ++ + L L IAPEK+Q+ YLG Sbjct 1087 RHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQLKQELTIAGLHIAPEKIQLQDPYTYLGF 1146 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 ++ I+ QK +RKD L+TL+DFQKLLG INW++PY+K+ DL+PL++ LKGDS Sbjct 1147 ELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTTADLKPLFDTLKGDSNPN 1206 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYP 23265 S R+L+K+A L KVE + + + ++ I T TG+ WQ P++W++ Sbjct 1207 SHRSLSKEALALLDKVETAIAEQFVTHINYSLPLMFLIFNTALTPTGLFWQNNPIMWVHL 1266 Query 23264 HISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILC 23085 SP K L Y A+A L +LG ++FGI P II PY+ +Q++ L + W I C Sbjct 1267 PASPKKVLLPYYDAIADLIILGRDHSKKYFGIEPSVIIQPYSKSQIDWLMQNTEMWPIAC 1326 Query 23084 CSFDGEFDNHYPKD 23043 S+ G DNHYP + Sbjct 1327 ASYVGILDNHYPPN 1340 Range 2: 1558 to 1765 Score:219 bits(558), Expect:0.0, Method:Compositional matrix adjust., Identities:111/208(53%), Positives:139/208(66%), Gaps:3/208(1%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMDVTH S+FGNLKY HVS+DT SG + ATL TGE ++ I+H L ++ G +K Sbjct 1558 IWQMDVTHYSEFGNLKYIHVSIDTFSGFLLATLQTGETTKHVITHLLHCFSIIGLPKQIK 1617 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGR- 22036 TDNGP YT+K+F FC T+Q+KH TG+PYNPQGQGIVE+AH +LK ++K K G Y Sbjct 1618 TDNGPGYTSKNFQEFCSTLQIKHVTGIPYNPQGQGIVERAHLSLKTTIEKIKKGEWYPTK 1677 Query 22035 -TPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN-ADVKWKDVLTGEWCGPDPVIL 21862 TPR L+ ALF NFL LD SAADR + P A VKWKD L W PDPVI+ Sbjct 1678 GTPRNILNHALFILNFLNLDDQNHSAADRFWHSNPRKQFAMVKWKDPLDNTWPWPDPVII 1737 Query 21861 RSRGAVCVFP*NQDNPIWVPERLTRKLP 21778 RG+VCV+ D W+PERL +++P Sbjct 1738 WGRGSVCVYSQTHDAARWLPERLVKQIP 1765 Range 3: 607 to 865 Score:202 bits(513), Expect:0.0, Method:Compositional matrix adjust., Identities:114/271(42%), Positives:157/271(57%), Gaps:18/271(6%) Query 25243 QKNRQTSPGP---SNIWGSTERQAGTRQTEALAFSSPSKGPRRATKGSAGLDLHSTTRLM 25073 Q NR P P +++WG + +Q P RAT GSAGLDL ST+ + Sbjct 607 QGNRTEGPAPGPETSLWGGQLCSSQQKQ--------PISKLTRATPGSAGLDLSSTSHTV 658 Query 25072 LTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVTSPQ 24893 LTP+MG Q + T GPLP +T GL+LGRSS +KGLQ+ PGVID DY G +K++ + Sbjct 659 LTPEMGPQALSTGIYGPLPPNTFGLILGRSSITIKGLQVYPGVIDNDYTGEIKIMAKAVN 718 Query 24892 GITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEPGNC--PMLTL 24719 I + G+RIAQL+LLP + + RG G GS+ + ++P C P LTL Sbjct 719 NIVTVPQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIYW----VQPITCQKPSLTL 774 Query 24718 TVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAE 24539 ++ F GL+DTGAD ++I + DWPP WP + L G+G P SSK LTW+D E Sbjct 775 WLDDKMFTGLIDTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKE 834 Query 24538 GRSGKITPYII-DIPVTLWGRDVLINLDMRL 24449 SG I P++I ++PV LWGRD+L + + + Sbjct 835 NNSGLIKPFVIPNLPVNLWGRDLLSQMKIMM 865 Range 4: 928 to 1031 Score:114 bits(286), Expect:0.0, Method:Compositional matrix adjust., Identities:63/104(61%), Positives:78/104(75%), Gaps:0/104(0%) Query 24282 PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQ 24103 PITWK++E +W+ Q PL+SEKL AA +LV EQL+ GHI S SPWNT IFVIKKKS KW+ Sbjct 928 PITWKSDEPVWVDQWPLTSEKLAAAQQLVQEQLEAGHITESNSPWNTPIFVIKKKSGKWR 987 Query 24102 L*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 L DLRA+N+ M +MG +Q GLP +IP + IIID+KDCF Sbjct 988 LLQDLRAVNATMVLMGALQPGLPSPVAIPQGYLKIIIDLKDCFF 1031 Range 5: 1390 to 1552 Score:96.3 bits(238), Expect:0.0, Method:Composition-based stats., Identities:53/168(32%), Positives:87/168(51%), Gaps:6/168(3%) Query 22906 RTSINSIQSRHPQITECKIVLEVFKRF-HDSFNLISDSAYVVKTVRSLEIAGPIRSTTTV 22730 +T++NS Q+ E + ++ V F + N+ +DSAY+ ++ LE I+ + Sbjct 1390 QTNLNS-----AQLVELQALIAVLSAFPNQPLNIYTDSAYLAHSIPLLETVAQIKHISET 1444 Query 22729 CQTLLELQKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTRE 22550 + L+ Q+LI+ R F+I H+R H+ LPGP+A N D +T ++ + Sbjct 1445 AKLFLQCQQLIYNRSIPFYIGHVRAHSGLPGPIAHGNQKADLATKTVASNINTNLESAQN 1504 Query 22549 FHQKFHVPAFTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRG 22406 H H+ A TL+ F I R AR +V C C + P+P +G+NPRG Sbjct 1505 AHTLHHLNAQTLKLMFNIPREQARQIVRQCPICATYLPVPHLGVNPRG 1552 Range 6: 1345 to 1382 Score:39.3 bits(90), Expect:0.0, Method:Compositional matrix adjust., Identities:16/38(42%), Positives:24/38(63%), Gaps:0/38(0%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMV 22915 F H FP++ + PL+ AL ++TDGS TG+ AY + Sbjct 1345 FCKLHAFIFPQIISKTPLNNALLVFTDGSSTGMAAYTL 1382 Range 7: 876 to 910 Score:33.9 bits(76), Expect:0.0, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:19/35(54%), Gaps:0/35(0%) Query 24416 MIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLG 24312 M+ GY P KGLGKN G P+ + D+ G G Sbjct 876 MLAQGYSPGKGLGKNENGILHPIPNQGQFDKKGFG 910 Range 8: 300 to 622 Score:223 bits(569), Expect:9e-56, Method:Compositional matrix adjust., Identities:127/330(38%), Positives:172/330(52%), Gaps:28/330(8%) Query 26150 FPVFLDVNGQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWG 25983 FPV V+GQ +HH DF IK+L + YG A + +A +E++ LTP DW Sbjct 300 FPVTETVDGQGQAWRHHNGFDFTVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWN 359 Query 25982 SLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTG 25809 +L RA LS G +L WKS +EN A N +G WD DML G G ++ Q Sbjct 360 TLVRAVLSGGDHLLWKSEFFENCRETAKRNQQAG----NGWDFDMLTGSGNYSSTDAQMQ 415 Query 25808 YPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPD 25629 Y +++QI A KAW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG + Sbjct 416 YDPGLFAQIQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAE 475 Query 25628 TVMPLIKQLVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA------- 25473 + +KQL YE C AI PY+ K L ++++C +I GP GLA A Sbjct 476 AGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQT 534 Query 25472 ---MIQLKRKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANEC 25302 + K K CF+CGRKGH+ C + +NS P LCPRCK+G HWANEC Sbjct 535 VKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHI--HNNSETKAPGLCPRCKRGKHWANEC 592 Query 25301 RSIKDLDGRTLATGYG----GAQPKKQTNV 25224 +S D G L G G P +T++ Sbjct 593 KSKTDSQGNPLPPHQGNRTEGPAPGPETSL 622 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Squirrel monkey retrovirus] Sequence ID: P03364.3 Length: 1880 Range 1: 1111 to 1434 Score:256 bits(653), Expect:0.0, Method:Compositional matrix adjust., Identities:139/324(43%), Positives:193/324(59%), Gaps:9/324(2%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPL P+D FAF++P +N + P YQW VL QGMANSPT+CQ +V A+ P+ Sbjct 1111 KDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPV 1170 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R Q+P+ I+H+MDDILL+ + YA ++ L + L IAP+KVQ+ + YLG Sbjct 1171 RSQWPEAYILHYMDDILLACDSAEAAKACYAHIISCLTSYGLKIAPDKVQVSEPFSYLGF 1230 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 ++ + ++ L+ DHLKTL+DFQKLLG I W++PY+K+P L PL ILKGD Sbjct 1231 ELHHQQVFTPRVCLKTDHLKTLNDFQKLLGDIQWLRPYLKLPTSALVPLNNILKGDPNPL 1290 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQ--------- 23292 S RALT +A+ SL + K ++ +++ ++L +L T T V WQ Sbjct 1291 SVRALTPEAKQSLALINKAIQNQSVQQISYNLPLVLLLLPTPHTPTAVFWQPNGTDPTKN 1350 Query 23291 QGPLLWIYPHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCA 23112 PLLW++ SP+K L YPS +A L + G + Q FG P IIIPYT Q+ L Sbjct 1351 GSPLLWLHLPASPSKVLLTYPSLLAMLIIKGRYTGRQLFGRDPHSIIIPYTQDQLTWLLQ 1410 Query 23111 LIDDWAILCCSFDGEFDNHYPKDP 23040 D+WAI SF G+ DNHYP DP Sbjct 1411 TSDEWAIALSSFTGDIDNHYPSDP 1434 Range 2: 1650 to 1856 Score:215 bits(548), Expect:0.0, Method:Compositional matrix adjust., Identities:106/208(51%), Positives:139/208(66%), Gaps:5/208(2%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMDVTH + FG ++ HV+VDT SG I AT TGE ++N ISH + A GK ++K Sbjct 1650 IWQMDVTHFTPFGKQRFVHVTVDTFSGFILATPQTGEASKNVISHVIHCLATIGKPHTIK 1709 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK-QKGGIAYG- 22039 TDNGP YT K+F FCQ +Q+KH TG+PYNPQGQG+VE+AH+TLK L + + + + Sbjct 1710 TDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKNALNRLARSPLGFSM 1769 Query 22038 RTPREQLSLALFTRNFLILDAHGCSAADR--HAATKPMTNADVKWKDVLTGEWCGPDPVI 21865 + PR LS ALF NFL LD+ G SAADR H T +A V W+D LT W GPDPV+ Sbjct 1770 QQPRNLLSHALFQLNFLQLDSQGRSAADRLWHPQTS-QQHATVMWRDPLTSVWKGPDPVL 1828 Query 21864 LRSRGAVCVFP*NQDNPIWVPERLTRKL 21781 + RG+ C++ +D P W+PERL R + Sbjct 1829 IWGRGSACIYDQKEDGPRWLPERLIRHI 1856 Range 3: 723 to 945 Score:146 bits(368), Expect:0.0, Method:Compositional matrix adjust., Identities:86/225(38%), Positives:129/225(57%), Gaps:3/225(1%) Query 25126 RATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPG 24947 RAT GSAGLDL +TT +LT Q + GPLP T GL+L + KG+Q++PG Sbjct 723 RATAGSAGLDLCTTTDTILTTQNSPLTLPVGIYGPLPPQTFGLILAEPALPSKGIQVLPG 782 Query 24946 VIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSR 24767 ++D D+ G + +++++ + + I G R+AQ+++LP + RG GS S Sbjct 783 ILDNDFEGEIHIILSTTKDLVTIPKGTRLAQIVILPLQQINSNFHKPYRGASAPGS--SD 840 Query 24766 FAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYE 24587 ++ P L L + G F G+LDTGAD +VIS WP WP T + L G+G Sbjct 841 VYWVQQISQQRPTLKLKLNGKLFSGILDTGADATVISYTHWPRNWPLTTVATHLRGIGQA 900 Query 24586 MAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDM 24455 P S++ L W+D+EG +G ITPY++ ++PV LWGRD+L + + Sbjct 901 TNPQQSAQMLKWEDSEGNNGHITPYVLPNLPVNLWGRDILSQMKL 945 Range 4: 1490 to 1657 Score:121 bits(303), Expect:0.0, Method:Compositional matrix adjust., Identities:68/169(40%), Positives:100/169(59%), Gaps:4/169(2%) Query 22870 QITECKIVLEVFKRF-HDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLELQKLIW 22694 Q+ E +L+VF H FNL +DSAY+ ++V LE I+S+T +LQ+LI Sbjct 1490 QLVELYAILQVFTVLAHQPFNLYTDSAYIAQSVPLLETVPFIKSSTNATPLFSKLQQLIL 1549 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R++ FFI H+R H NLPGP+A NAL D +T + F + P+ + H H+ A TL Sbjct 1550 NRQHPFFIGHLRAHLNLPGPLAEGNALADAAT-QIFPIISDPIHEATQAHTLHHLNAHTL 1608 Query 22513 QQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRG--PSAKTLADGCH 22373 + +KI+R AR++V +C+ CV P+P +G+NPRG P+A D H Sbjct 1609 RLLYKITREQARDIVKACKQCVVATPVPHLGVNPRGLVPNAIWQMDVTH 1657 Range 5: 952 to 1115 Score:100 bits(248), Expect:0.0, Method:Compositional matrix adjust., Identities:67/164(41%), Positives:90/164(54%), Gaps:3/164(1%) Query 24453 D*LMSTPTGQGYDDKNGLHAQKRSRKK---FTRTS*PSAAEF*KGQDRSRFFLGAIEGGI 24283 D +M+ QGY GL + + T + F + RSR + Sbjct 952 DTVMTQMLSQGYLPGQGLGKNNQGITQPITITPKKDKTGLGFHQNLPRSRAIDIPVPHAD 1011 Query 24282 PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQ 24103 I+WK + +W+ Q PL+ EK AA LV EQL GHI+P+ SPWNT IF+IKKKS W+ Sbjct 1012 KISWKITDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIEPTNSPWNTPIFIIKKKSGSWR 1071 Query 24102 L*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 L DLRA+N M MG +Q GLP +IP ++ I+ID+KDCF Sbjct 1072 LLQDLRAVNKVMVPMGALQPGLPSPVAIPLNYHKIVIDLKDCFF 1115 Range 6: 1435 to 1495 Score:43.1 bits(100), Expect:0.0, Method:Compositional matrix adjust., Identities:26/66(39%), Positives:38/66(57%), Gaps:7/66(10%) Query 23037 VTVFFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMVDSQEPVLIQYSPGTPKL-- 22864 V F H FPK+T P+ A ++TDGS G+ AY++D+Q P+ I+ +P L Sbjct 1435 VIQFAKLHQFIFPKITKCAPIPQATLVFTDGSSNGIAAYVIDNQ-PISIK----SPYLSA 1489 Query 22863 QNVKLY 22846 Q V+LY Sbjct 1490 QLVELY 1495 Range 7: 379 to 673 Score:144 bits(362), Expect:1e-31, Method:Compositional matrix adjust., Identities:103/305(34%), Positives:153/305(50%), Gaps:36/305(11%) Query 26105 VDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLSPGKYLDWKSFL 25926 ++ KTI+++ +V YG A F +A +E+L LTP DW L+RA LS G + WKS Sbjct 379 LNLKTIEKIKTAVANYGPTAPFTVALVESLSERWLTPSDWFFLSRAALSGGDNILWKS-E 437 Query 25925 YENANTQAAINLASGADPQRHWDADMLL-GIGRFALD--QTGYPDLVYSQINEIAIKAWK 25755 YE+ + Q A P+ D + + G + + Q +P + +QI +KAWK Sbjct 438 YEDISKQFAERTRVRPPPK---DGPLKIPGASPYQNNDKQAQFPPGLLTQIQSAGLKAWK 494 Query 25754 ALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDC 25575 LP +GA + +L K+ QGP E +SDFV+ + E+A ++FG ++ +K L YE C Sbjct 495 RLPQKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPAC 554 Query 25574 STAITPYKHKGLE-----VWM----KVCREIGGPLTNVGLAAAMIQLKRKS-----TMET 25437 +AI P++ K L +W V IG L N LA A + R + T Sbjct 555 QSAIRPFRQKELSTMSPLLWYCSAHAVGLAIGAALQN--LAPAQLLEPRPAFAIIVTNPA 612 Query 25436 CFRCGRKGHYRSQCPDRSGEQSNSRPPQPRL---------CPRCKKGNHWANECRSIKDL 25284 F+ + Q P + Q N+ PQ L CPRCKKG HWA+ECRS D+ Sbjct 613 IFQ--ETAPKKIQPPTQLPTQPNA--PQASLIKNLGPTTKCPRCKKGFHWASECRSRLDI 668 Query 25283 DGRTL 25269 +G+ + Sbjct 669 NGQPI 673 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIAIL3] Sequence ID: P12894.1 Length: 814 Range 1: 63 to 352 Score:339 bits(869), Expect:5e-131, Method:Compositional matrix adjust., Identities:156/290(54%), Positives:216/290(74%), Gaps:0/290(0%) Query 23909 NEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRDQFPKLRIIHFMDDILLSAKDCST 23730 + +PDK YQW VL QGM+NSPTMCQLYVQ+AL P+R+QFP L ++ +MDDILL KD + Sbjct 63 SAKPDKRYQWKVLPQGMSNSPTMCQLYVQKALLPVREQFPSLILLLYMDDILLCHKDLTM 122 Query 23729 LEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGTKITPHSISPQKIELRKDHLKTLHDF 23550 L+ AY ++K L L IA EKVQ+ G++LG+ ++P I PQK+E+R+DHL TL+DF Sbjct 123 LQKAYPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKVEIRRDHLHTLNDF 182 Query 23549 QKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTSPRALTKDARFSLRKVEKGLEKAML 23370 QKLLG INW++P++K+P+ +L+PL+ IL+GD ++SPR LT A +L+KVEK L+ A L Sbjct 183 QKLLGDINWLRPFLKIPSAELRPLFSILEGDPHISSPRTLTLAANQALQKVEKALQNAQL 242 Query 23369 RRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYPHISPNKTLEYYPSAVAQLAMLGVKS 23190 +R ++ + LC+ +T T VLWQ GPLLWI+P++SP K +++YP A+AQLA+ G+K+ Sbjct 243 QRIEDSQPFSLCVFKTAQLPTAVLWQNGPLLWIHPNVSPAKIIDWYPDAIAQLALKGLKA 302 Query 23189 CIQHFGILPKKIIIPYTATQVETLCALIDDWAILCCSFDGEFDNHYPKDP 23040 I HFG P +I+PYTA QV+TL A +DWA+L SF G+ DNHYPK P Sbjct 303 AITHFGQSPYLLIVPYTAAQVQTLAAASNDWAVLVTSFSGKIDNHYPKHP 352 Range 2: 407 to 577 Score:132 bits(331), Expect:5e-131, Method:Compositional matrix adjust., Identities:72/171(42%), Positives:105/171(61%), Gaps:0/171(0%) Query 22873 PQITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLELQKLIW 22694 PQ+ EC +VLEV K F N++SDS YVV V LE+AG I+ ++ V ++Q ++ Sbjct 407 PQVVECLVVLEVLKTFLKPLNIVSDSYYVVNAVNLLEVAGVIKPSSRVANIFQQIQLVLL 466 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 +R++ +I H+R H+ LPGPMA N L D +T ++PV+ R FH FHV A TL Sbjct 467 SRRSPVYITHVRAHSGLPGPMALGNDLADKATKVVAAALSSPVEAARNFHNNFHVTAETL 526 Query 22513 QQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRGPSAKTLADGCHTHIS 22361 + +F ++R AR++V CQ+C +F P+P VGINPRG + TH+S Sbjct 527 RSRFSLTRKEARDIVTQCQSCCEFLPVPHVGINPRGIRPLQVWQMDVTHVS 577 Range 3: 356 to 408 Score:48.5 bits(114), Expect:5e-131, Method:Compositional matrix adjust., Identities:22/54(41%), Positives:33/54(61%), Gaps:1/54(1%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMVDSQEPVLIQYSPGTPK 22867 F V FP++T PL + +YTDGSKTG+GAY+ + + V QY+ +P+ Sbjct 356 FAQNQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKV-VSKQYNENSPQ 408 Range 4: 563 to 774 Score:288 bits(738), Expect:2e-79, Method:Compositional matrix adjust., Identities:134/212(63%), Positives:162/212(76%), Gaps:3/212(1%) Query 22407 VRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGK 22228 +R L++WQMDVTH+S FG L+Y HVS+DTCSGI+ A+ +TGEKA + I HCLE W+AWGK Sbjct 563 IRPLQVWQMDVTHVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGK 622 Query 22227 SDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGI 22048 LKTDNGPAYT++ F FC+ M V H TGLPYNPQGQGIVE+AHRTLK L KQK G Sbjct 623 PRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIKQKRGT 682 Query 22047 ---AYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGP 21877 R PR +SLALFT NFL +DAHG +AA+RH + N VKWK+VL +W GP Sbjct 683 FEETVPRAPRVSVSLALFTLNFLNIDAHGHTAAERHCSEPDRPNEMVKWKNVLDNKWYGP 742 Query 21876 DPVILRSRGAVCVFP*NQDNPIWVPERLTRKL 21781 DP+++RSRGA+CVFP N+DNP WVPERLTRK+ Sbjct 743 DPILIRSRGAICVFPQNEDNPFWVPERLTRKI 774 >RecName: Full=Intracisternal A-particle Pol-related polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse intracisternal A-particle MIA14] Sequence ID: P11368.1 Length: 867 Range 1: 119 to 433 Score:362 bits(930), Expect:3e-130, Method:Compositional matrix adjust., Identities:167/315(53%), Positives:234/315(74%), Gaps:0/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPL P+D +FAFT+PS+N++EPD YQW VL QGM+NSPTMCQLYVQ+AL P+ Sbjct 119 KDCFFSIPLCPRDRPRFAFTIPSINSDEPDNRYQWKVLPQGMSNSPTMCQLYVQEALLPV 178 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R+QFP L ++ +MDDILL K+ + L+ AY ++K L L IA EKVQ+ G++LG+ Sbjct 179 REQFPSLILLLYMDDILLCHKELTMLQKAYPFLLKTLSQWGLQIATEKVQISDTGQFLGS 238 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 ++P I PQK+E+R+DHL TL++FQKLLG INW++P++K+P+ +L+PL+ L+GD ++ Sbjct 239 VVSPDKIVPQKVEIRRDHLHTLNNFQKLLGDINWLRPFLKIPSAELRPLFWYLEGDPHIS 298 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIYP 23265 SPR LT A +L+KVEK L+ A L+ ++ + LC+ +T T VLWQ GPLLWI+P Sbjct 299 SPRTLTLAANQALQKVEKALQNAQLQAIEDSQPFSLCVFKTAQLPTAVLWQNGPLLWIHP 358 Query 23264 HISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILC 23085 ++SP K +++YP A+AQLA+ G+K+ I HFG P +I+PYTA QV+TL A +DWA+L Sbjct 359 NVSPAKIIDWYPDAIAQLALKGLKAAITHFGRSPYLLIVPYTAAQVQTLAATSNDWAVLV 418 Query 23084 CSFDGEFDNHYPKDP 23040 SF G+ DNHYPK P Sbjct 419 TSFSGKIDNHYPKHP 433 Range 2: 488 to 659 Score:105 bits(263), Expect:3e-130, Method:Compositional matrix adjust., Identities:62/174(36%), Positives:96/174(55%), Gaps:5/174(2%) Query 22873 PQITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLELQKLIW 22694 P++ EC +VLEV K F + N++SDS YVV V LE + ++ V ++Q ++ Sbjct 488 PRMVECLVVLEVLKTFLEPLNIVSDSCYVVNAVNLLEGGWSDKPSSRVANIFQQIQLVLL 547 Query 22693 ARKNKFFIQHIRVHTNLP--GPMASNNALVDGSTHREFIFHAAPVDLTRE-FHQKFHVPA 22523 +R + +I H+R H+ LP P S N L D +T ++PV+ +E F FHV A Sbjct 548 SR-SPVYITHVRAHSGLPTSAPWLSGNDLADKATSGGCSL-SSPVEAAQEIFITTFHVTA 605 Query 22522 FTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRGPSAKTLADGCHTHIS 22361 + + ++R AR++V CQ+C +F P+P VGINPRG + TH+S Sbjct 606 EHYRSRNSLTRKEARDIVTQCQSCCEFLPVPHVGINPRGIRPLQVWQMDVTHVS 659 Range 3: 437 to 490 Score:48.9 bits(115), Expect:3e-130, Method:Compositional matrix adjust., Identities:22/55(40%), Positives:34/55(61%), Gaps:1/55(1%) Query 23028 FFTEHPVTFPKVTASEPLSGALDIYTDGSKTGVGAYMVDSQEPVLIQYSPGTPKL 22864 F V FP++T PL + +YTDGSKTG+GAY+ + + V QY+ +P++ Sbjct 437 FAQNQSVVFPQITVRNPLKNGIVVYTDGSKTGIGAYVANGKV-VSKQYNENSPRM 490 Range 4: 645 to 836 Score:246 bits(628), Expect:8e-65, Method:Compositional matrix adjust., Identities:116/192(60%), Positives:143/192(74%), Gaps:1/192(0%) Query 22407 VRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGK 22228 +R L++WQMDVTH+S FG L+Y HVS+DTCSGI+ A+ +TGEKA + I HCLE W+AWGK Sbjct 645 IRPLQVWQMDVTHVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLEAWSAWGK 704 Query 22227 SDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGI 22048 LKTDNGPAYT++ F FC+ M V H TGLPYNPQGQGIVE+AHRTLK L KQK + Sbjct 705 PRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKTYLIKQKREL 764 Query 22047 AYGRTP-REQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGPDP 21871 +E LS+ALFT NFL +D HG +AA+R + N VKWK+VL +W GPDP Sbjct 765 EEILPQHQESLSMALFTLNFLNIDVHGHTAAERQCSEPDRPNEMVKWKNVLHNKWYGPDP 824 Query 21870 VILRSRGAVCVF 21835 +++RSRGAVCVF Sbjct 825 ILIRSRGAVCVF 836 Range 5: 5 to 129 Score:135 bits(341), Expect:2e-29, Method:Compositional matrix adjust., Identities:78/125(62%), Positives:89/125(71%), Gaps:0/125(0%) Query 24327 QDRSRFFLGAIEGGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPW 24148 Q S F L AI PI WKT + +W+PQ LSSEKL A +LV EQL+LGHI PSTSPW Sbjct 5 QTGSGFSLAAIGAARPIPWKTGDPVWVPQWHLSSEKLEAVIQLVEEQLKLGHIDPSTSPW 64 Query 24147 NTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFLF 23968 NT IFVIKKKS KW+L HDLR IN QM + G +QRGLP LS++P W +IIIDIKDCF Sbjct 65 NTPIFVIKKKSGKWRLLHDLRPINEQMNLFGPVQRGLPVLSALPRGWNLIIIDIKDCFFS 124 Query 23967 HSSCP 23953 CP Sbjct 125 IPLCP 129 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P03365.3 Length: 1755 Range 1: 975 to 1286 Score:239 bits(609), Expect:1e-128, Method:Compositional matrix adjust., Identities:129/313(41%), Positives:190/313(60%), Gaps:2/313(0%) Query 23975 FYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRDQ 23796 F++I L P+D +FAF++PS N + P + +QW VL QGM NSPT+CQ +V +A+ +RD+ Sbjct 975 FFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFVDKAILTVRDK 1034 Query 23795 FPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGTKIT 23616 + I+H+MDDILL+ S ++ +++ L + L ++ EK+Q +YLGT I Sbjct 1035 YQDSYIVHYMDDILLAHPSRSIVDEILTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQ 1094 Query 23615 PHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTSPR 23436 S+S QK+++R D L+TL+DFQKLLG+INWI+P++K+ +L+PL+EIL GDS S R Sbjct 1095 GDSVSYQKLQIRTDKLRTLNDFQKLLGNINWIRPFLKLTTGELKPLFEILNGDSNPISTR 1154 Query 23435 ALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIY-PHI 23259 LT +A +L+ + + L A ++R + LCIL+T T LWQ G + WI+ PHI Sbjct 1155 KLTPEACKALQLMNERLSTARVKRLDLSQPWSLCILKTEYTPTACLWQDGVVEWIHLPHI 1214 Query 23258 SPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILCCS 23079 SP K + Y QL + G + F P I++PYT Q + L +DW I Sbjct 1215 SP-KVITPYDIFCTQLIIKGRHRSKELFSKDPDYIVVPYTKVQFDLLLQEKEDWPISLLG 1273 Query 23078 FDGEFDNHYPKDP 23040 F GE H PKDP Sbjct 1274 FLGEVHFHLPKDP 1286 Range 2: 625 to 852 Score:165 bits(417), Expect:1e-128, Method:Compositional matrix adjust., Identities:101/230(44%), Positives:141/230(61%), Gaps:3/230(1%) Query 25126 RATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPG 24947 R T GSAGLDL S L+L+ + GV + T +G LP+ T GL++GRSS+ KGL+++PG Sbjct 625 RGTPGSAGLDLSSQKDLILSLEDGVSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPG 684 Query 24946 VIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSR 24767 VID D+ G +KV+V + + I G+RIAQLLLLP L P RG G GST S Sbjct 685 VIDSDFQGEIKVMVKAAKNAVIIHKGERIAQLLLLPYLKLPNPVIKEERGSEGFGST-SH 743 Query 24766 FAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYE 24587 ++ + PML + + G FLGLLDTGAD++ I+ DWP WP + +L GLG Sbjct 744 VHWVQEISDSRPMLHIYLNGRRFLGLLDTGADKTCIAGRDWPANWPIHQTESSLQGLGMA 803 Query 24586 MAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDMRLTNE 24440 SS+ L W+ E +SG I P++I +P TLWGRD++ ++ +RL + Sbjct 804 CGVARSSQPLRWQH-EDKSGIIHPFVIPTLPFTLWGRDIMKDIKVRLMTD 852 Range 3: 856 to 976 Score:107 bits(267), Expect:1e-128, Method:Compositional matrix adjust., Identities:63/121(52%), Positives:84/121(69%), Gaps:3/121(2%) Query 24324 DRSRFFLGAIEGGI---PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTS 24154 D +GAIE + I+WK+++ +W+ Q PL EKL A +LV+EQLQLGH++ S S Sbjct 856 DSQDLMIGAIESNLFADQISWKSDQPVWLNQWPLKQEKLQALQQLVTEQLQLGHLEESNS 915 Query 24153 PWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCF 23974 PWNT +FVIKKKS KW+L DLRA+N+ M MG +Q GLP ++P W IIIID++DCF Sbjct 916 PWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVPKGWEIIIIDLQDCF 975 Query 23973 L 23971 Sbjct 976 F 976 Range 4: 1497 to 1698 Score:194 bits(492), Expect:1e-46, Method:Compositional matrix adjust., Identities:100/208(48%), Positives:127/208(61%), Gaps:12/208(5%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+S+FG LKY HV+VDT S AT TGE ++ + H + +A G +K Sbjct 1497 LWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIK 1556 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK-QKGGIAYGR 22036 TDN PAY ++S F ++ H TG+PYNPQGQ IVE+ H+ +K L K QK G Y Sbjct 1557 TDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYY-- 1614 Query 22035 TPREQLSLALFTRNFLILDAHGCSAADRH-----AATKPMTNADVKWKDVLTGEWCGPDP 21871 TP L+ ALF N + +D G +AA+RH A KPM V WKD+LTG W GPD Sbjct 1615 TPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPM----VMWKDLLTGSWKGPDV 1670 Query 21870 VILRSRGAVCVFP*NQDNPIWVPERLTR 21787 +I RG CVFP + + PIWVP+R R Sbjct 1671 LITAGRGYACVFPQDAETPIWVPDRFIR 1698 Range 5: 265 to 578 Score:145 bits(366), Expect:5e-32, Method:Compositional matrix adjust., Identities:101/322(31%), Positives:153/322(47%), Gaps:32/322(9%) Query 26162 LGLSFPVFL----DVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTP 25995 L +FPV D + EP+ KT+K+L +V+T G +A + + ++ + LTP Sbjct 265 LTFTFPVVFMGESDEDDTPVWEPLPLKTLKELQSAVRTMGPSAPYTLQVVDMVASQWLTP 324 Query 25994 GDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF--AL 25821 DW ARA LSPG Y+ W++ E ++ + A+G + DMLLG G+F Sbjct 325 SDWHQTARATLSPGDYVLWRTEYEE--KSKEMVQKAAGKRKGK-VSLDMLLGTGQFLSPS 381 Query 25820 DQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIF 25641 Q V + A+ AW+A+P G L + QG E + F++ + E+ ++ Sbjct 382 SQIKLSKDVLKDVTTNAVLAWRAIPPPGVKKTVLAGLKQGNEESYETFISRLEEAVYRMM 441 Query 25640 GDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAMI 25467 + LIKQL +E C I P + G ++ +++ C + P G+A AA + Sbjct 442 PRGEGSDILIKQLAWENANSLCQDLIRPIRKTGTIQDYIRACLD-ASPAVVQGMAYAAAM 500 Query 25466 QLKRKSTM----------------ETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPR 25335 + ++ ST CF CG+ GH R C D G + R P P LCPR Sbjct 501 RGQKYSTFVKQTYGGGKGGQGAEGPVCFSCGKTGHIRKDCKDEKG---SKRAP-PGLCPR 556 Query 25334 CKKGNHWANECRSIKDLDGRTL 25269 CKKG HW +EC+S D DG L Sbjct 557 CKKGYHWKSECKSKFDKDGNPL 578 Range 6: 1323 to 1506 Score:105 bits(261), Expect:8e-20, Method:Composition-based stats., Identities:69/190(36%), Positives:92/190(48%), Gaps:16/190(8%) Query 22900 SINSIQSRHP----------QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGP 22751 S+ IQ R P Q E V+ F+ FNL +DS YV +E A Sbjct 1323 SVTYIQGREPIIKENTQNTAQQAEIVAVITAFEEVSQPFNLYTDSKYVTGLFPEIETA-T 1381 Query 22750 IRSTTTVCQTLLELQKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAA 22571 + T + L LQ+LI R+ KF+I HIR HT LPGP+A NA D T I A Sbjct 1382 LSPRTKIYTELKHLQRLIHKRQEKFYIGHIRGHTGLPGPLAQGNAYADSLTR---ILTA- 1437 Query 22570 PVDLTREFHQKFHVPAFTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRGPSAKT 22391 ++ +E H H A L+ +F I+R AR +V C NC + PQ+G+NPRG + Sbjct 1438 -LESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRV 1496 Query 22390 LADGCHTHIS 22361 L TH+S Sbjct 1497 LWQMDVTHVS 1506 >RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11283.2 Length: 1755 Range 1: 975 to 1286 Score:238 bits(608), Expect:2e-128, Method:Compositional matrix adjust., Identities:130/313(42%), Positives:189/313(60%), Gaps:2/313(0%) Query 23975 FYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRDQ 23796 F++I L P+D +FAF++PS N + P + +QW VL QGM NSPT+CQ +V +A+ +RD+ Sbjct 975 FFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFVDKAILTVRDK 1034 Query 23795 FPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGTKIT 23616 + I+H+MDDILL+ S ++ +++ L + L ++ EK+Q +YLGT I Sbjct 1035 YQDSYIVHYMDDILLAHPSRSIVDEILTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQ 1094 Query 23615 PHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTSPR 23436 ++S QK+++R D L+TL+DFQKLLG+INWI+P++K+ +L+PL+EIL GDS S R Sbjct 1095 GDAVSYQKLQIRTDKLRTLNDFQKLLGNINWIRPFLKLTTGELKPLFEILNGDSNPISIR 1154 Query 23435 ALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLLWIY-PHI 23259 LT +A +L+ V + L A ++R LCIL+T T LWQ G L WI+ PHI Sbjct 1155 KLTPEACKALQLVNERLSIARVKRLDLSRPWSLCILKTEYTPTACLWQNGVLEWIHLPHI 1214 Query 23258 SPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAILCCS 23079 SP K + Y QL + G + F P I++PYT Q + L +DW I Sbjct 1215 SP-KVITPYDIFCTQLIIKGRHRSKELFSKDPDYIVVPYTKVQFDLLLQEKEDWPISLLG 1273 Query 23078 FDGEFDNHYPKDP 23040 F GE H PKDP Sbjct 1274 FLGEVHFHLPKDP 1286 Range 2: 625 to 852 Score:164 bits(416), Expect:2e-128, Method:Compositional matrix adjust., Identities:101/230(44%), Positives:141/230(61%), Gaps:3/230(1%) Query 25126 RATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPG 24947 R T GSAGLDL S L+L+ + GV + T +G LP+ T GL++GRSS+ KGL+++PG Sbjct 625 RGTPGSAGLDLSSQKDLILSLEDGVSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPG 684 Query 24946 VIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSR 24767 VID D+ G +KV+V + + I G+RIAQLLLLP L P RG G GST S Sbjct 685 VIDSDFQGEIKVMVKAAKNAVIIHKGERIAQLLLLPYLKLPNPIIKEERGSEGFGST-SH 743 Query 24766 FAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYE 24587 ++ + PML +++ G FLGLLDTGAD++ I+ DWP WP + +L GLG Sbjct 744 VHWVQEISDSRPMLHISLNGRRFLGLLDTGADKTCIAGRDWPANWPIHQTESSLQGLGMA 803 Query 24586 MAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDMRLTNE 24440 SS+ L W+ E +SG I P++I +P TLWGRD++ + +RL + Sbjct 804 CGVARSSQPLRWQH-EDKSGIIHPFVIPTLPFTLWGRDIMKEIKVRLMTD 852 Range 3: 856 to 976 Score:107 bits(267), Expect:2e-128, Method:Compositional matrix adjust., Identities:63/121(52%), Positives:84/121(69%), Gaps:3/121(2%) Query 24324 DRSRFFLGAIEGGI---PITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTS 24154 D +GAIE + I+WK+++ +W+ Q PL EKL A +LV+EQLQLGH++ S S Sbjct 856 DSQDLMIGAIESNLFADQISWKSDQPVWLNQWPLKQEKLQALQQLVTEQLQLGHLEESNS 915 Query 24153 PWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCF 23974 PWNT +FVIKKKS KW+L DLRA+N+ M MG +Q GLP ++P W IIIID++DCF Sbjct 916 PWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVPKGWEIIIIDLQDCF 975 Query 23973 L 23971 Sbjct 976 F 976 Range 4: 1497 to 1698 Score:192 bits(487), Expect:4e-46, Method:Compositional matrix adjust., Identities:99/208(48%), Positives:126/208(60%), Gaps:12/208(5%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+S+FG LKY HV+VDT S AT TGE ++ + H + +A G +K Sbjct 1497 LWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGFPQKIK 1556 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK-QKGGIAYGR 22036 TDN PAY ++S F ++ H TG+PYNPQGQ IVE+ H+ +K L K QK G Y Sbjct 1557 TDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYY-- 1614 Query 22035 TPREQLSLALFTRNFLILDAHGCSAADRH-----AATKPMTNADVKWKDVLTGEWCGPDP 21871 TP L+ ALF N + +D G +AA+RH A KPM V WKD+L G W GPD Sbjct 1615 TPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPM----VMWKDLLAGSWKGPDV 1670 Query 21870 VILRSRGAVCVFP*NQDNPIWVPERLTR 21787 +I RG CVFP + + PIWVP+R R Sbjct 1671 LITAGRGYACVFPQDAETPIWVPDRFIR 1698 Range 5: 265 to 578 Score:141 bits(356), Expect:7e-31, Method:Compositional matrix adjust., Identities:99/322(31%), Positives:151/322(46%), Gaps:32/322(9%) Query 26162 LGLSFPVFL----DVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTP 25995 L +FPV D + EP+ KT+K+L +V+T G +A + + ++ + LTP Sbjct 265 LTFTFPVVFMGESDDDDTPVWEPLPLKTLKELQSAVRTMGPSAPYTLQVVDMVASQWLTP 324 Query 25994 GDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF--AL 25821 DW ARA LSPG Y+ W++ YE + + A + DMLLG G+F Sbjct 325 SDWHQTARATLSPGDYVLWRT-EYEEKSKETVQKTAGKRKGKV--SLDMLLGTGQFLSPS 381 Query 25820 DQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIF 25641 Q V + A+ AW+A+P G L + QG E + F++ + E+ ++ Sbjct 382 SQIKLSKDVLKDVTTNAVLAWRAIPPPGVKKTVLAGLKQGNEESYETFISRLEEAVYRMM 441 Query 25640 GDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAMI 25467 + LIKQL +E C I P + G ++ +++ C + P G+A AA + Sbjct 442 PRGEGSDILIKQLAWENANSLCQDLIRPMRKTGTMQDYIRACLD-ASPAVVQGMAYAAAM 500 Query 25466 QLKRKSTM----------------ETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPR 25335 + ++ ST CF CG+ GH + C + G + R P P LCPR Sbjct 501 RGQKYSTFVKQTYGGGKGGQGSEGPVCFSCGKTGHIKRDCKEEKGSK---RAP-PGLCPR 556 Query 25334 CKKGNHWANECRSIKDLDGRTL 25269 CKKG HW +EC+S D DG L Sbjct 557 CKKGYHWKSECKSKFDKDGNPL 578 Range 6: 1323 to 1506 Score:107 bits(266), Expect:2e-20, Method:Composition-based stats., Identities:70/190(37%), Positives:93/190(48%), Gaps:16/190(8%) Query 22900 SINSIQSRHP----------QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGP 22751 S+ IQ R P Q E V+ F+ SFNL +DS YV +E A Sbjct 1323 SVTYIQGREPIIKENTQNTAQQAEIVAVITAFEEVSQSFNLYTDSKYVTGLFPEIETA-T 1381 Query 22750 IRSTTTVCQTLLELQKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAA 22571 + T + L LQ+LI R+ KF+I HIR HT LPGP+A NA D T I A Sbjct 1382 LSPRTKIYTELRHLQRLIHKRQEKFYIGHIRGHTGLPGPLAQGNAYADSLTR---ILTA- 1437 Query 22570 PVDLTREFHQKFHVPAFTLQQKFKISRAAARNVVLSCQNCVQFHPLPQVGINPRGPSAKT 22391 ++ +E H H A L+ +F I+R AR +V C NC + PQ+G+NPRG + Sbjct 1438 -LESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRV 1496 Query 22390 LADGCHTHIS 22361 L TH+S Sbjct 1497 LWQMDVTHVS 1506 >RecName: Full=Gag-Pro polyprotein; AltName: Full=Pr95; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Mason-Pfizer monkey virus] Sequence ID: P07570.2 Length: 911 Range 1: 12 to 607 Score:233 bits(595), Expect:6e-113, Method:Compositional matrix adjust., Identities:180/608(30%), Positives:263/608(43%), Gaps:81/608(13%) Query 26870 LSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG---KDLDRETS 26700 + L++ L R +K++ LL F D PWF G++ ++ W +VG +D Sbjct 12 VEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFG 71 Query 26699 EGKLKPGKKLLWHMVHACLEDKQCEEAVRTGQKILTEQQESMSegekvlkegkkrkggke 26520 K+ W+++ ++ K+ V E +S S+ + Sbjct 72 PEKVPVTAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLTKTSQNPDLDLIS 131 Query 26519 vkektektkeRIDRDRGNNQDLETKKIYPSLKALTLGMSSDSELSDNDLVDLEAEAARYE 26340 + E K +D+G + + K+ L A T D S+ D LE EAA+Y Sbjct 132 LDSDDEGAKSSSLQDKGLSSTKKPKRFPVLLTAQTSKDPEDPNPSEVDWDGLEDEAAKY- 190 Query 26339 KEIYHPDWP-----------------HVYAMQEQAKELDEKaiipmappapPYNFQC--- 26220 ++PDWP V A+ +EL EK Q Sbjct 191 ---HNPDWPPFLTRPPPYNKATPSAPTVMAVVNPKEELKEKIAQLEEQIKLEELHQALIS 247 Query 26219 ---------QRMVKP--AGGTSFCPEVWK*LGLS------------------FPVFLDVN 26127 + + P AGG S P W + FPV V+ Sbjct 248 KLQKLKTGNETVTHPDTAGGLSRTPH-WPGQHIPKGKCCASREKEEQIPKDIFPVTETVD 306 Query 26126 GQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLS 25959 GQ +HH DF IK+L + YG A + +A +E++ LTP DW +L RA LS Sbjct 307 GQGQAWRHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLS 366 Query 25958 PGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTGYPDLVYSQ 25785 G +L WKS +EN A N +G WD DML G G ++ Q Y +++Q Sbjct 367 GGDHLLWKSEFFENCRDTAKRNQQAG----NGWDFDMLTGSGNYSSTDAQMQYDPGLFAQ 422 Query 25784 INEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQ 25605 I A KAW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG + + +KQ Sbjct 423 IQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQ 482 Query 25604 LVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA----------MIQLK 25458 L YE C AI PY+ K L ++++C +I GP GLA A + K Sbjct 483 LAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQTVKDFLNNK 541 Query 25457 RKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANECRSIKDLDG 25278 K CF+CG+KGH+ C + + +N+ P P LCPRCK+G HWANEC+S D G Sbjct 542 NKEKGGCCFKCGKKGHFAKNCHEHA--HNNAEPKVPGLCPRCKRGKHWANECKSKTDNQG 599 Query 25277 RTLATGYG 25254 + G Sbjct 600 NPIPPHQG 607 Range 2: 606 to 864 Score:204 bits(518), Expect:6e-113, Method:Compositional matrix adjust., Identities:116/271(43%), Positives:159/271(58%), Gaps:18/271(6%) Query 25243 QKNRQTSPGP---SNIWGSTERQAGTRQTEALAFSSPSKGPRRATKGSAGLDLHSTTRLM 25073 Q NR P P +++WGS + +Q P RAT GSAGLDL ST+ + Sbjct 606 QGNRVEGPAPGPETSLWGSQLCSSQQKQ--------PISKLTRATPGSAGLDLCSTSHTV 657 Query 25072 LTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVTSPQ 24893 LTP+MG Q + T GPLP +T GL+LGRSS +KGLQ+ PGVID DY G +K++ + Sbjct 658 LTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVN 717 Query 24892 GITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEPGNC--PMLTL 24719 I +S G+RIAQL+LLP + + RG G GS+ + ++P C P LTL Sbjct 718 NIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIYW----VQPITCQKPSLTL 773 Query 24718 TVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAE 24539 ++ F GL+DTGAD ++I + DWPP WP + L G+G P SSK LTW+D E Sbjct 774 WLDDKMFTGLIDTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKE 833 Query 24538 GRSGKITPYII-DIPVTLWGRDVLINLDMRL 24449 SG I P++I ++PV LWGRD+L + + + Sbjct 834 NNSGLIKPFVIPNLPVNLWGRDLLSQMKIMM 864 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 1] Sequence ID: P04024.2 Length: 912 Range 1: 300 to 608 Score:214 bits(544), Expect:2e-109, Method:Compositional matrix adjust., Identities:124/316(39%), Positives:166/316(52%), Gaps:24/316(7%) Query 26150 FPVFLDVNGQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWG 25983 FPV V+GQ +HH DF IK+L + YG A + +A +E++ LTP DW Sbjct 300 FPVTETVDGQGQAWRHHNGFDFTVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWN 359 Query 25982 SLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTG 25809 +L RA LS G +L WKS +EN A N +G WD DML G G ++ Q Sbjct 360 TLVRAVLSGGDHLLWKSEFFENCRETAKRNQQAG----NGWDFDMLTGSGNYSSTDAQMQ 415 Query 25808 YPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPD 25629 Y +++QI A KAW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG + Sbjct 416 YDPGLFAQIQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAE 475 Query 25628 TVMPLIKQLVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA------- 25473 + +KQL YE C AI PY+ K L ++++C +I GP GLA A Sbjct 476 AGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQT 534 Query 25472 ---MIQLKRKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANEC 25302 + K K CF+CGRKGH+ C + +NS P LCPRCK+G HWANEC Sbjct 535 VKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHI--HNNSETKAPGLCPRCKRGKHWANEC 592 Query 25301 RSIKDLDGRTLATGYG 25254 +S D G L G Sbjct 593 KSKTDSQGNPLPPHQG 608 Range 2: 607 to 865 Score:200 bits(509), Expect:2e-109, Method:Compositional matrix adjust., Identities:114/271(42%), Positives:157/271(57%), Gaps:18/271(6%) Query 25243 QKNRQTSPGP---SNIWGSTERQAGTRQTEALAFSSPSKGPRRATKGSAGLDLHSTTRLM 25073 Q NR P P +++WG + +Q P RAT GSAGLDL ST+ + Sbjct 607 QGNRTEGPAPGPETSLWGGQLCSSQQKQ--------PISKLTRATPGSAGLDLSSTSHTV 658 Query 25072 LTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVTSPQ 24893 LTP+MG Q + T GPLP +T GL+LGRSS +KGLQ+ PGVID DY G +K++ + Sbjct 659 LTPEMGPQALSTGIYGPLPPNTFGLILGRSSITIKGLQVYPGVIDNDYTGEIKIMAKAVN 718 Query 24892 GITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEPGNC--PMLTL 24719 I + G+RIAQL+LLP + + RG G GS+ + ++P C P LTL Sbjct 719 NIVTVPQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIYW----VQPITCQKPSLTL 774 Query 24718 TVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAE 24539 ++ F GL+DTGAD ++I + DWPP WP + L G+G P SSK LTW+D E Sbjct 775 WLDDKMFTGLIDTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKE 834 Query 24538 GRSGKITPYII-DIPVTLWGRDVLINLDMRL 24449 SG I P++I ++PV LWGRD+L + + + Sbjct 835 NNSGLIKPFVIPNLPVNLWGRDLLSQMKIMM 865 Range 3: 876 to 910 Score:32.7 bits(73), Expect:2e-109, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:19/35(54%), Gaps:0/35(0%) Query 24416 MIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLG 24312 M+ GY P KGLGKN G P+ + D+ G G Sbjct 876 MLAQGYSPGKGLGKNENGILHPIPNQGQFDKKGFG 910 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Jaagsiekte sheep retrovirus] Sequence ID: P31625.3 Length: 866 Range 1: 247 to 560 Score:204 bits(520), Expect:1e-108, Method:Compositional matrix adjust., Identities:127/324(39%), Positives:172/324(53%), Gaps:31/324(9%) Query 26177 EVWK*LGLSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLT 25998 EV L+FPVF + N Q+++E + FK +K+L + YG A F IA IE+LG L Sbjct 247 EVVSDFSLAFPVF-ENNNQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIESLGTQALP 305 Query 25997 PGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF-AL 25821 P DW ARACLS G YL WKS +E A +N G +ML+G G + A Sbjct 306 PNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGI----QTSYEMLIGEGPYQAT 361 Query 25820 D-QTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKI 25644 D Q + Y+QI+ A +AWK LP+ + +L+KV QGP EP+ DFVA ++++ KI Sbjct 362 DTQLNFLPGAYAQISNAARQAWKKLPSSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKI 421 Query 25643 FGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAM 25470 D M L KQL +E C A+ PY+ KG L ++++C +I GP G+A AA Sbjct 422 MSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADI-GPSYMQGIAMAAA 480 Query 25469 IQLK-----------------RKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLC 25341 +Q K +KS CF CG+ GH + CP + N+ P LC Sbjct 481 LQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNT----PNLC 536 Query 25340 PRCKKGNHWANECRSIKDLDGRTL 25269 PRCKKG HWA +CRS D+ G L Sbjct 537 PRCKKGKHWARDCRSKTDVQGNPL 560 Range 2: 572 to 825 Score:200 bits(508), Expect:1e-108, Method:Compositional matrix adjust., Identities:126/271(46%), Positives:163/271(60%), Gaps:19/271(7%) Query 25225 SPGPSN-IWGSTERQAGTRQTEALAFSSPSKGPRRATKGSAGLDLHSTTRLMLTPQMGVQ 25049 +PGP +WG+T AG+++T A RAT+GSAGLDL +T+ +LTP+MGVQ Sbjct 572 APGPETMLWGNT---AGSKRTIADLC--------RATRGSAGLDLCATSYTVLTPEMGVQ 620 Query 25048 PIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLGTVKVLVTSPQGITAISPG 24869 + T GPLP TVGLLLGRSS++LKG+ I PGVID DY G +K+L ++P I I+ G Sbjct 621 TLATGVFGPLPPGTVGLLLGRSSASLKGILIHPGVIDSDYTGEIKILASAPNKIIVINAG 680 Query 24868 DRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEPGNCPMLTLTVEGCSFLGL 24689 RIAQLLL+P L NR R D G GS+ + + E P L L + F G+ Sbjct 681 QRIAQLLLVP-LVIQGKTINRDRQDKGFGSSDAYWVQNVTEAR--PELELRINANFFRGV 737 Query 24688 LDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGKITPYI 24509 LDTGAD SVIS WP WP Q + L G+G P SS LTWKD +G +G+ PYI Sbjct 738 LDTGADISVISDKYWPTTWPKQMAISTLQGIGQTTNPEQSSSLLTWKDKDGHTGQFKPYI 797 Query 24508 I-DIPVTLWGRDVLINLDMRLTNEYSHRPRI 24419 + +PV LWGRD+L + + L YS P + Sbjct 798 LPYLPVNLWGRDILSKMGVYL---YSPSPTV 825 Range 3: 823 to 863 Score:39.7 bits(91), Expect:1e-108, Method:Compositional matrix adjust., Identities:18/41(44%), Positives:24/41(58%), Gaps:0/41(0%) Query 24434 PQAKDMMIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLG 24312 P D+M+ G +P +GLGK QG P+ L +DR GLG Sbjct 823 PTVTDLMLDQGLLPNQGLGKQHQGIILPLDLKPNQDRKGLG 863 Range 4: 1 to 107 Score:47.0 bits(110), Expect:0.032, Method:Compositional matrix adjust., Identities:34/108(31%), Positives:52/108(48%), Gaps:5/108(4%) Query 26897 MGNSHSTPL-LSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVGK 26721 MG++HS L + L +L R + + K L++FL PWF G++ L W KVG+ Sbjct 1 MGHTHSRQLFVHMLSVMLKHRGITVSKTKLINFLSFIEEVCPWFPREGTVNLETWKKVGE 60 Query 26720 DLDRE-TSEGKLK-PGKKL-LWHMVHACLEDKQCEEAVRTGQKILTEQ 26586 + T G K P + L W ++ CL D +E R G + E+ Sbjct 61 QIRTHYTLHGPEKVPVETLSFWTLIRDCL-DFDNDELKRLGNLLKQEE 107 >RecName: Full=Intracisternal A-particle Gag-related polyprotein; Contains: RecName: Full=Matrix protein; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=Capsid protein; Contains: RecName: Full=Nucleocapsid protein; Contains: RecName: Full=Protease [Golden hamster intracisternal A-particle H18] Sequence ID: P04023.1 Length: 572 Range 1: 1 to 487 Score:318 bits(815), Expect:5e-92, Method:Compositional matrix adjust., Identities:202/548(37%), Positives:289/548(52%), Gaps:77/548(14%) Query 26897 MGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVGKD 26718 MG+S S +++ALQ +L QR LKI + L +F+ E + APW+ SGSL + +W+K+GK+ Sbjct 1 MGSSQS--VVTALQTVLKQRDLKIAPRTLQNFMKEVDRVAPWYACSGSLTVASWNKLGKE 58 Query 26717 LDRETSEGKLKPGKKLLWHMVHACLEDKQCEEAVRTGQKILTEQQESMSegekvlkegkk 26538 LDR+ +EG L G K +W +V CLED+ C A+ Q L E Q+SMSE E+ + G + Sbjct 59 LDRKHAEGDLCLGTKAIWKLVKNCLEDEACHPAIIESQGTLEEVQDSMSETERSERMGAR 118 Query 26537 rkggkevkektektkeRIDRDRGNNQD---------LETKKIYPS--LKALTLGMSSDSE 26391 ++ K+ + ++ G+ YP+ L+AL L S Sbjct 119 KRKDMSKKKGPPQEVKKGGEKEGSYHSPLNKSKKKKKPESSQYPAVELEALELDNSDSDT 178 Query 26390 LSDNDLVDLEAEAARYEKEIYHPDWPHVYAMQEQAKELDEKaiipmappapPYNFQCQRM 26211 L ++ LE E ARYE++ YHPD + + PPY + Sbjct 179 LDSSEEGGLEEEVARYEEKRYHPDRHRPLKTKMNVRPPPINPAGSRPSAPPPYELRLN-- 236 Query 26210 VKPAGGTSFCP-EVWK*LGLSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVI 26034 G SF P E + + ++FPVF + G + H PVD+ IK+LA+SV+ YGVNA F Sbjct 237 ---TGTDSFLPLEERRKIQMAFPVFENAEGGRVHTPVDYNQIKELAESVRNYGVNANFTT 293 Query 26033 AQIEALGRYCLTPGDWGSLARACL-SPGKYLDWKSFLYENANTQAAINLASGADPQRHWD 25857 Q+E L + +TP DW + +A L + G+Y++WK+ Y+ A QA +N +G Sbjct 294 LQVERLANFAMTPTDWQTTVKAVLPNMGQYMEWKALWYDAAQAQARVNATAGRS------ 347 Query 25856 ADMLLGIGRFALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDF 25677 SG+LTK++QGP EPFSDF Sbjct 348 ------------------------------------------SGHLTKIVQGPQEPFSDF 365 Query 25676 VAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKGLEVWMKVCREIGGPL 25497 VA + E+A++IFGD + MPLI+QLVYEQ T++C AI P K KGL+ W++VCRE+GGPL Sbjct 366 VARMTEAASRIFGDSEQAMPLIEQLVYEQATQECRAAIAPRKSKGLQDWLRVCRELGGPL 425 Query 25496 TNVGLAAAMIQLKRK---STMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKK 25326 TN GLAAA++Q R S + CF CGR GH + C Q+ R + +LC RC K Sbjct 426 TNAGLAAAILQTHRYRDLSNRKACFNCGRMGHLKKDC------QAPERTRESKLCYRCGK 479 Query 25325 GNHWANEC 25302 G H A+EC Sbjct 480 GYHRASEC 487 Range 2: 485 to 572 Score:112 bits(279), Expect:2e-22, Method:Compositional matrix adjust., Identities:49/88(56%), Positives:66/88(75%), Gaps:0/88(0%) Query 24703 SFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGK 24524 S G++D+GAD+S+IS+H WP WPT SS +L GLGY+ +P +S+ LTW+DAEG+ G Sbjct 485 SECGIMDSGADKSIISLHWWPKSWPTVVSSHSLQGLGYQSSPAISASALTWRDAEGKQGC 544 Query 24523 ITPYIIDIPVTLWGRDVLINLDMRLTNE 24440 TPY++ +PV LWGRDVL + M LTNE Sbjct 545 FTPYVLPLPVNLWGRDVLQAMGMTLTNE 572 >RecName: Full=Endogenous retrovirus group K member 18 Pol protein; AltName: Full=HERV-K(C1a) Pol protein; AltName: Full=HERV-K110 Pol protein; AltName: Full=HERV-K18 Pol protein; AltName: Full=HERV-K_1q23.3 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Ribonuclease H; Short=RNase H [Homo sapiens] Sequence ID: Q9QC07.2 Length: 812 Range 1: 124 to 437 Score:236 bits(602), Expect:2e-82, Method:Compositional matrix adjust., Identities:135/315(43%), Positives:181/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 RD+F IIH+ DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 RDKFSDCYIIHYFDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SKRMLTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGPTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 24 to 128 Score:99.8 bits(247), Expect:2e-82, Method:Compositional matrix adjust., Identities:60/105(57%), Positives:80/105(76%), Gaps:0/105(0%) Query 24285 IPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKW 24106 IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS SPWN+ +FVI+KKS KW Sbjct 24 IPLTWKTEKLVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSSKW 83 Query 24105 QL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 ++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDCF Sbjct 84 RMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFF 128 Range 3: 660 to 802 Score:116 bits(291), Expect:4e-43, Method:Compositional matrix adjust., Identities:63/143(44%), Positives:83/143(58%), Gaps:2/143(1%) Query 22359 FGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLKTDNGPAYTAKS 22180 G L Y HV+VDT S + AT TGE + H L +A G + +KTDNGP Y +K+ Sbjct 660 LGRLSYVHVTVDTYSHFMCATCQTGESTSHVKKHLLSCFAVMGVPEKIKTDNGPGYCSKA 719 Query 22179 FWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYGRTPREQLSLAL 22006 F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G TP+ QL+LAL Sbjct 720 FQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKECTTPQMQLNLAL 779 Query 22005 FTRNFLILDAHGCSAADRHAATK 21937 +T NFL + + + + H K Sbjct 780 YTLNFLNIYRNQTTTSAEHLTGK 802 Range 4: 494 to 642 Score:82.4 bits(202), Expect:4e-43, Method:Compositional matrix adjust., Identities:55/156(35%), Positives:73/156(46%), Gaps:9/156(5%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D FI +E H HV A L Sbjct 554 KRNFPFYITHIRAHTNLPGPLTKANEQADLLVSSAFI-------KAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNC-VQFHPLPQVGINPR 22409 + KF ++ A+++V C C V P + G+NP Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQVLDLPTQEAGVNPE 642 Range 5: 649 to 660 Score:25.8 bits(55), Expect:4e-43, Method:Compositional matrix adjust., Identities:8/12(67%), Positives:11/12(91%), Gaps:0/12(0%) Query 22391 FGRWMSHTYLNL 22356 +G+WMSH YL+L Sbjct 649 YGKWMSHMYLHL 660 >RecName: Full=Endogenous retrovirus group K member 11 Pol protein; AltName: Full=HERV-K_3q27.2 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: Q9UQG0.2 Length: 969 Range 1: 124 to 437 Score:234 bits(598), Expect:3e-82, Method:Compositional matrix adjust., Identities:134/315(43%), Positives:182/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R++F IIH++DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 REKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SKRILTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 7 to 128 Score:100 bits(249), Expect:3e-82, Method:Compositional matrix adjust., Identities:66/122(54%), Positives:87/122(71%), Gaps:5/122(4%) Query 24321 RSRF-FLGAIE----GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPST 24157 R+R FLGA IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS Sbjct 7 RNRVSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSF 66 Query 24156 SPWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDC 23977 SPWN+ +FVI+KKS KW++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDC Sbjct 67 SPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDC 126 Query 23976 FL 23971 F Sbjct 127 FF 128 Range 3: 649 to 852 Score:157 bits(397), Expect:5e-36, Method:Compositional matrix adjust., Identities:91/205(44%), Positives:114/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 649 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 708 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 709 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 768 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 769 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 827 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 828 VITWGRGFACVSPGENQLPVWIPTR 852 Range 4: 494 to 657 Score:89.0 bits(219), Expect:6e-15, Method:Compositional matrix adjust., Identities:58/171(34%), Positives:81/171(47%), Gaps:9/171(5%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 554 KRNFPFYITHIRAHTNLPGPLTKANEEAD-------LLVSSALIKAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHI 22364 + KF ++ A+++V C C H P + G+NPRG L TH+ Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHV 657 >RecName: Full=Endogenous retrovirus group K member 10 Pol protein; AltName: Full=HERV-K10 Pol protein; AltName: Full=HERV-K107 Pol protein; AltName: Full=HERV-K_5q33.3 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P10266.2 Length: 1014 Range 1: 124 to 437 Score:233 bits(593), Expect:7e-82, Method:Compositional matrix adjust., Identities:133/315(42%), Positives:181/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R++F IIH++DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 REKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SQRILTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L + G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRITKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGLIDNHYPK 437 Range 2: 7 to 128 Score:101 bits(251), Expect:7e-82, Method:Compositional matrix adjust., Identities:66/122(54%), Positives:86/122(70%), Gaps:5/122(4%) Query 24321 RSRF-FLGAIE----GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPST 24157 R+R FLGA+ IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS Sbjct 7 RNRVSFLGAVTVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSF 66 Query 24156 SPWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDC 23977 SPWN+ +FVI+KKS KW DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDC Sbjct 67 SPWNSPVFVIQKKSGKWHTLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDC 126 Query 23976 FL 23971 F Sbjct 127 FF 128 Range 3: 649 to 852 Score:156 bits(395), Expect:8e-36, Method:Compositional matrix adjust., Identities:91/205(44%), Positives:114/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 649 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 708 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 709 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 768 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 769 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 827 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 828 VITWGRGFACVSPGENQLPVWLPTR 852 Range 4: 494 to 657 Score:87.0 bits(214), Expect:2e-14, Method:Compositional matrix adjust., Identities:57/171(33%), Positives:81/171(47%), Gaps:9/171(5%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRDELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I +IR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 554 KRNFPFYITYIRAHTNLPGPLTKANEQAD-------LLVSSALIKAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHI 22364 + KF ++ A+++V C C H P + G+NPRG L TH+ Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHV 657 >RecName: Full=Endogenous retrovirus group K member 25 Pol protein; AltName: Full=HERV-K_11q22.1 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63136.1 Length: 954 Range 1: 124 to 437 Score:233 bits(594), Expect:1e-81, Method:Compositional matrix adjust., Identities:133/315(42%), Positives:181/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R++F IIH++DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 REKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LK L+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKALNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SKRMLTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 7 to 128 Score:99.8 bits(247), Expect:1e-81, Method:Compositional matrix adjust., Identities:66/122(54%), Positives:87/122(71%), Gaps:5/122(4%) Query 24321 RSRF-FLGAIE----GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPST 24157 R+R FLGA IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS Sbjct 7 RNRVSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSF 66 Query 24156 SPWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDC 23977 SPWN+ +FVI+KKS KW++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDC Sbjct 67 SPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDC 126 Query 23976 FL 23971 F Sbjct 127 FF 128 Range 3: 647 to 850 Score:157 bits(396), Expect:6e-36, Method:Compositional matrix adjust., Identities:91/205(44%), Positives:114/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 647 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCHTGESTSHVKKHLLSCFAVMGVPEKIK 706 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 707 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 766 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 767 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 825 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 826 VITWGRGFACVSPGENQLPVWIPTR 850 Range 4: 494 to 655 Score:85.1 bits(209), Expect:8e-14, Method:Compositional matrix adjust., Identities:58/171(34%), Positives:81/171(47%), Gaps:11/171(6%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDF--DINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 551 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 552 KRNFPFYITHIRAHTNLPGPLTKANKQAD-------LLVSSALIKAQELHALTHVNAAGL 604 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHI 22364 + KF ++ A+++V C C H P + G+NPRG L TH+ Sbjct 605 KNKFDVTWKLAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHV 655 >RecName: Full=Endogenous retrovirus group K member 113 Pol protein; AltName: Full=HERV-K113 Pol protein; AltName: Full=HERV-K_19p13.11 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63132.1 Length: 956 Range 1: 124 to 437 Score:233 bits(594), Expect:1e-81, Method:Compositional matrix adjust., Identities:133/315(42%), Positives:180/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 RD+F IIH++DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 RDKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYVMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT + ++ VE+ ++ A + R + L I T G++ Q L+ W + Sbjct 304 SKRMLTPETTKEIKLVEEKIQSAQINRIDPLAPLRLLIFATAHSPIGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 7 to 128 Score:100 bits(248), Expect:1e-81, Method:Compositional matrix adjust., Identities:66/122(54%), Positives:87/122(71%), Gaps:5/122(4%) Query 24321 RSRF-FLGAIE----GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPST 24157 R+R FLGA IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS Sbjct 7 RNRVSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSF 66 Query 24156 SPWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDC 23977 SPWN+ +FVI+KKS KW++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDC Sbjct 67 SPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDC 126 Query 23976 FL 23971 F Sbjct 127 FF 128 Range 3: 649 to 852 Score:154 bits(388), Expect:5e-35, Method:Compositional matrix adjust., Identities:90/205(44%), Positives:113/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 649 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 708 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 709 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 768 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LA +T NFL I ++A++H K P + WKD W Sbjct 769 TTPQMQLNLAPYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 827 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 828 VITWGRGFACVSPGENQLPVWMPTR 852 Range 4: 494 to 657 Score:89.4 bits(220), Expect:4e-15, Method:Compositional matrix adjust., Identities:58/171(34%), Positives:81/171(47%), Gaps:9/171(5%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 554 KRNFPFYITHIRAHTNLPGPLTKANEQAD-------LLVSSALIKAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHI 22364 + KF ++ A+++V C C H P + G+NPRG L TH+ Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHV 657 Range 5: 703 to 735 Score:37.4 bits(85), Expect:0.029, Method:Compositional matrix adjust., Identities:15/33(45%), Positives:22/33(66%), Gaps:0/33(0%) Query 48201 IPQQIKPDNLPDFTSSQFKTFCTCWEIVHHTGI 48103 +P++IK DN P + S F+ F + W+I H TGI Sbjct 703 VPEKIKTDNGPGYCSKAFQKFLSQWKISHTTGI 735 Range 6: 677 to 701 Score:29.3 bits(64), Expect:0.029, Method:Compositional matrix adjust., Identities:11/25(44%), Positives:16/25(64%), Gaps:0/25(0%) Query 48278 MWATAQISEKSKQLIHHMLSTFAIM 48204 +WAT Q E + + H+LS FA+M Sbjct 677 IWATCQTGESTSHVKKHLLSCFAVM 701 >RecName: Full=Endogenous retrovirus group K member 8 Pol protein; AltName: Full=HERV-K115 Pol protein; AltName: Full=HERV-K_8p23.1 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63133.1 Length: 956 Range 1: 124 to 437 Score:233 bits(595), Expect:2e-81, Method:Compositional matrix adjust., Identities:134/315(43%), Positives:181/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R +F IIH++DDIL +A+ L Y + + + L IA +K+Q YLG Sbjct 184 RKKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVASAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LKTL+DFQKLLG INWIQP + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIQPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SKRILTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 24 to 128 Score:99.0 bits(245), Expect:2e-81, Method:Compositional matrix adjust., Identities:60/105(57%), Positives:80/105(76%), Gaps:0/105(0%) Query 24285 IPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKW 24106 IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS SPWN+ +FVI+KKS KW Sbjct 24 IPLTWKTEKLVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKW 83 Query 24105 QL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 ++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDCF Sbjct 84 RMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFF 128 Range 3: 649 to 852 Score:158 bits(399), Expect:1e-55, Method:Compositional matrix adjust., Identities:91/205(44%), Positives:114/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 649 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 708 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 709 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 768 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 769 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 827 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 828 VITWGRGFACVSPGENQLPVWIPTR 852 Range 4: 494 to 656 Score:88.6 bits(218), Expect:1e-55, Method:Compositional matrix adjust., Identities:59/170(35%), Positives:82/170(48%), Gaps:11/170(6%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDFDQPINIISDSAYVVQATRVVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 554 KRNFPFYITHIRAHTNLPGPLTKANEQAD-------LLVSSALIKAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRG--PSAKTLADGCH 22373 + KF ++ A+++V C C H P + G+NPRG P+A D H Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTH 656 >RecName: Full=Endogenous retrovirus group K member 6 Pol protein; AltName: Full=HERV-K(C7) Pol protein; AltName: Full=HERV-K(HML-2.HOM) Pol protein; AltName: Full=HERV-K108 Pol protein; AltName: Full=HERV-K_7p22.1 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: Q9BXR3.2 Length: 956 Range 1: 124 to 437 Score:233 bits(594), Expect:2e-81, Method:Compositional matrix adjust., Identities:134/315(43%), Positives:181/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R++F IIH +DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 REKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I PQKIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SKRMLTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWKI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 24 to 128 Score:99.0 bits(245), Expect:2e-81, Method:Compositional matrix adjust., Identities:60/105(57%), Positives:80/105(76%), Gaps:0/105(0%) Query 24285 IPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKW 24106 IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS SPWN+ +FVI+KKS KW Sbjct 24 IPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKW 83 Query 24105 QL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 ++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDCF Sbjct 84 RMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFF 128 Range 3: 649 to 852 Score:157 bits(398), Expect:3e-36, Method:Compositional matrix adjust., Identities:91/205(44%), Positives:114/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 649 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 708 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 709 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 768 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 769 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 827 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 828 VITWGRGFACVSPGENQLPVWIPTR 852 Range 4: 494 to 657 Score:89.4 bits(220), Expect:4e-15, Method:Compositional matrix adjust., Identities:58/171(34%), Positives:81/171(47%), Gaps:9/171(5%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 554 KRNFPFYITHIRAHTNLPGPLTKANEQAD-------LLVSSALIKAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHI 22364 + KF ++ A+++V C C H P + G+NPRG L TH+ Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHV 657 >RecName: Full=Endogenous retrovirus group K member 7 Pol protein; AltName: Full=HERV-K(III) Pol protein; AltName: Full=HERV-K102 Pol protein; AltName: Full=HERV-K_1q22 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: P63135.1 Length: 1459 Range 1: 124 to 437 Score:231 bits(589), Expect:3e-81, Method:Compositional matrix adjust., Identities:133/315(42%), Positives:181/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 124 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 183 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R++F IIH++DDIL +A+ L Y + + N L IA +K+Q YLG Sbjct 184 REKFSDCYIIHYIDDILCAAETRDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLGM 243 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I QKIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 244 QIENRKIKQQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 303 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 304 SKRILTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 363 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 364 LPH-STVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 422 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 423 GLANFVGIIDNHYPK 437 Range 2: 7 to 128 Score:100 bits(249), Expect:3e-81, Method:Compositional matrix adjust., Identities:66/122(54%), Positives:87/122(71%), Gaps:5/122(4%) Query 24321 RSRF-FLGAIE----GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPST 24157 R+R FLGA IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS Sbjct 7 RNRLSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSF 66 Query 24156 SPWNTLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDC 23977 SPWN+ +FVI+KKS KW++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDC Sbjct 67 SPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDC 126 Query 23976 FL 23971 F Sbjct 127 FF 128 Range 3: 649 to 852 Score:157 bits(398), Expect:8e-36, Method:Compositional matrix adjust., Identities:91/205(44%), Positives:114/205(55%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+ FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 649 LWQMDVTHVPSFGRLSYVHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 708 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 709 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 768 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 769 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 827 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 828 VITWGRGFACVSPGENQLPVWIPTR 852 Range 4: 494 to 657 Score:89.0 bits(219), Expect:6e-15, Method:Compositional matrix adjust., Identities:58/171(34%), Positives:81/171(47%), Gaps:9/171(5%) Query 22870 QITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL-QKLIW 22694 Q E V+ V + F N+ISDSAYVV+ R +E A S L L Q+ + Sbjct 494 QRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLLQQTVR 553 Query 22693 ARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHVPAFTL 22514 R F+I HIR HTNLPGP+ N D + ++ + +E H HV A L Sbjct 554 KRNFPFYITHIRAHTNLPGPLTKANEQAD-------LLVSSALIKAQELHALTHVNAAGL 606 Query 22513 QQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHI 22364 + KF ++ A+++V C C H P + G+NPRG L TH+ Sbjct 607 KNKFDVTWKQAKDIVQHCTQCQILHLPTQEAGVNPRGLCPNALWQMDVTHV 657 >RecName: Full=LINE-1 retrotransposable element ORF1 protein; Short=L1-ORF1p; AltName: Full=LINE retrotransposable element 1; AltName: Full=LINE1 retrotransposable element 1; AltName: Full=Transposase element L1Md-A101/L1Md-A102/L1Md-A2 [Mus musculus] Sequence ID: P11260.2 Length: 357 Range 1: 197 to 356 Score:239 bits(611), Expect:5e-98, Method:Compositional matrix adjust., Identities:115/160(72%), Positives:130/160(81%), Gaps:0/160(0%) Query 18559 SNYLQKIIEENFPNLKKEMPMNIQEDYRISNRLDQKRNSSCHIIVKTANAENKERILKAV 18380 +N KIIEENFPN+KKEMPM IQE YR NRLDQKRNSS HII++T NA NK+RILKAV Sbjct 197 ANIFNKIIEENFPNIKKEMPMIIQEAYRTPNRLDQKRNSSRHIIIRTTNALNKDRILKAV 256 Query 18379 RGKGHVTYKSRPVNITPDFSPDTMKARRPWTYVIQTLREHNCLHRLLYLVKLSINVDGET 18200 R KG VTYK RP+ ITPDFSP+TMKARR WT VIQTLREH C RLLY KLSI +DGET Sbjct 257 REKGQVTYKGRPIRITPDFSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGET 316 Query 18199 KIFHDKSKFTQYLSTNPAV*RKIYGKAQHKEAS*TLEKPR 18080 K+FHDK+KFTQYLSTNPA+ R I K Q+K+ + LE+PR Sbjct 317 KVFHDKTKFTQYLSTNPALQRIITEKKQYKDGNHALEQPR 356 Range 2: 1 to 200 Score:148 bits(373), Expect:5e-98, Method:Compositional matrix adjust., Identities:99/212(47%), Positives:127/212(59%), Gaps:23/212(10%) Query 19149 MARGKQRNPST*NQDYMASSEPNSPTKANTENPNTNKSKI*I*KHI*S*CWRTSRKT*RT 18970 MA+GK++NP+ NQD+ SSE ++PT + +PNT ++ KT Sbjct 1 MAKGKRKNPTNRNQDHSPSSERSTPTPPSPGHPNTTEN------------LDPDLKTFLM 48 Query 18969 SLEKHRKT*INK*KPNGEESK----KSMKEFQENTIKQLKE-------LKVEIEAKKKEH 18823 + + K +K + +ES +++KE QENT KQ+ E LK E++ KK Sbjct 49 MMIEDIKKDFHKSLKDLQESTAKELQALKEKQENTAKQVMEMNKTILELKGEVDTIKKTQ 108 Query 18822 RETTLDIENQRKRQGAIDISITKRIQETEERISGTEDSIEIIDATVKYNIKWKELLVQNI 18643 E TL+IE KR G ID SI+ RIQE EERISG EDSIE ID TVK N K K +L QNI Sbjct 109 SEATLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTTVKENTKCKRILTQNI 168 Query 18642 QEIQDSMRRSNLRIIGIEESEDSQLKAPVIIF 18547 Q IQD+MRR NLRIIGI+E+ED QLK P IF Sbjct 169 QVIQDTMRRPNLRIIGIDENEDFQLKGPANIF 200 Range 3: 166 to 346 Score:238 bits(606), Expect:1e-81, Method:Compositional matrix adjust., Identities:123/181(68%), Positives:138/181(76%), Gaps:9/181(4%) Query 66063 QNIQEIKDTMRRSNLRIIGIEESEDSQLKGPVNTFNKIIEENFPNLKKEMPINIQEDYRT 65884 QNIQ I+DTMRR NLRIIGI+E+ED QLKGP N FNKIIEENFPN+KKEMP+ IQE YRT Sbjct 166 QNIQVIQDTMRRPNLRIIGIDENEDFQLKGPANIFNKIIEENFPNIKKEMPMIIQEAYRT 225 Query 65883 PSRLDQKRKSSCHIIVETKNAQNKERILKAVREKGQITYKGRPIRITPDFSPDTM*ARRC 65704 P+RLDQKR SS HII+ T NA NK+RILKAVREKGQ+TYKGRPIRITPDFSP+TM ARR Sbjct 226 PNRLDQKRNSSRHIIIRTTNALNKDRILKAVREKGQVTYKGRPIRITPDFSPETMKARRA 285 Query 65703 RKDVIQILRKHKCQHRLLYPVKLSIK---------KKMEKPRYSMTKPNLHNIFLQIQPY 65551 DVIQ LR+HKCQ RLLYP KLSI K + +Y T P L I + + Y Sbjct 286 WTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFHDKTKFTQYLSTNPALQRIITEKKQY 345 Query 65550 K 65548 K Sbjct 346 K 346 Range 4: 42 to 166 Score:90.1 bits(222), Expect:1e-81, Method:Compositional matrix adjust., Identities:64/133(48%), Positives:83/133(62%), Gaps:15/133(11%) Query 66437 DLKSHLTMMMEDFKKDMKNSLRETEENINKQVEAYREESQKSLKEFQENTIKQAkelkse 66258 DLK+ L MM+ED KKD SL++ +E+ K+++A LKE QENT KQ E+ Sbjct 42 DLKTFLMMMIEDIKKDFHKSLKDLQESTAKELQA--------LKEKQENTAKQVMEMNKT 93 Query 66257 -------ikeikKAQRETTLDIENQRKT*GAIDTSTTNRIQEIEVRISGAEDSIEIIDTT 66099 + IKK Q E TL+IE K G ID S +NRIQE+E RISGAEDSIE IDTT Sbjct 94 ILELKGEVDTIKKTQSEATLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTT 153 Query 66098 FEDNIKRKKLLAK 66060 ++N K K++L + Sbjct 154 VKENTKCKRILTQ 166 Range 5: 2 to 25 Score:26.2 bits(56), Expect:1e-81, Method:Compositional matrix adjust., Identities:12/24(50%), Positives:16/24(66%), Gaps:0/24(0%) Query 66555 ARGKHRNTSNRKQDYMASSEPILP 66484 A+GK +N +NR QD+ SSE P Sbjct 2 AKGKRKNPTNRNQDHSPSSERSTP 25 Range 6: 1 to 356 Score:277 bits(708), Expect:1e-80, Method:Compositional matrix adjust., Identities:180/392(46%), Positives:228/392(58%), Gaps:73/392(18%) Query 1091 MARGKCRSPSNRNQDWMIPSEPNSPTKANTEYPNTPEKQELDFKSHFIMMMEDFKVINNP 912 MA+GK ++P+NRNQD SE ++PT + +PNT E + D K+ +MM+ED K Sbjct 1 MAKGKRKNPTNRNQDHSPSSERSTPTPPSPGHPNTTENLDPDLKTFLMMMIEDIK----- 55 Query 911 KETQDNKSKRLEVLEEETQKSLKKLQEK---TNKQEKEMNKTIQELKMEIETIKEAQRET 741 + K L+ L+E T K L+ L+EK T KQ EMNKTI ELK E++TIK+ Q E Sbjct 56 ----KDFHKSLKDLQESTAKELQALKEKQENTAKQVMEMNKTILELKGEVDTIKKTQSEA 111 Query 740 TLEIEKLGKR*GVRDASITNRIQEIEERISGEEDSIHNYQR*CKTEKVTSPKH*GNPGHN 561 TLEIE LGKR G DASI+NRIQE+EERISG EDSI N K N Sbjct 112 TLEIETLGKRSGTIDASISNRIQEMEERISGAEDSIENIDTTVK--------------EN 157 Query 560 EKIKSKDNRYRRE*RLLTQRTSKYLQQNHRK----------------------------- 468 K K R+LTQ + +Q R+ Sbjct 158 TKCK----------RILTQNI-QVIQDTMRRPNLRIIGIDENEDFQLKGPANIFNKIIEE 206 Query 467 KFPNLKKEMP-----TYKKPTELQIDWTRKETPPVT**SKHQMHKTKNIKRVRGKGQVMY 303 FPN+KKEMP Y+ P L D R + + + + ++K + +K VR KGQV Y Sbjct 207 NFPNIKKEMPMIIQEAYRTPNRL--DQKRNSSRHIIIRTTNALNKDRILKAVREKGQVTY 264 Query 302 KGRVIRITPDFSPESIKARRS*TNVIKTIRGHKSQPRLLYPAKTSINIDGETKIFHDKTK 123 KGR IRITPDFSPE++KARR+ T+VI+T+R HK QPRLLYPAK SI IDGETK+FHDKTK Sbjct 265 KGRPIRITPDFSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFHDKTK 324 Query 122 FTKYLSTNPALQRKING*PQHNEANYTLEKAR 27 FT+YLSTNPALQR I Q+ + N+ LE+ R Sbjct 325 FTQYLSTNPALQRIITEKKQYKDGNHALEQPR 356 Range 7: 59 to 132 Score:70.5 bits(171), Expect:2e-20, Method:Compositional matrix adjust., Identities:43/83(52%), Positives:58/83(69%), Gaps:9/83(10%) Query 30464 HKNSLKEIKNNTSKQVEAVKEEIQEALKELQENIPKEVEELNKIVQDLKMEIETIKKAQR 30285 HK SLK+++ +T+K+++A LKE QEN K+V E+NK + +LK E++TIKK Q Sbjct 59 HK-SLKDLQESTAKELQA--------LKEKQENTAKQVMEMNKTILELKGEVDTIKKTQS 109 Query 30284 ETTLVIENHGKRSGVIDASITKR 30216 E TL IE GKRSG IDASI+ R Sbjct 110 EATLEIETLGKRSGTIDASISNR 132 Range 8: 1 to 63 Score:40.4 bits(93), Expect:2e-20, Method:Compositional matrix adjust., Identities:32/75(43%), Positives:42/75(56%), Gaps:12/75(16%) Query 30670 ILRGKCRILSDRNQDYLASSETSSPTKANTGYPNTPEKQDLDLK*HLmmmmmmmmmmmmm 30491 + +GK + ++RNQD+ SSE S+PT + G+PNT E D DLK L M Sbjct 1 MAKGKRKNPTNRNQDHSPSSERSTPTPPSPGHPNTTENLDPDLKTFL------------M 48 Query 30490 mmMEDFKKDIKIPLK 30446 MM+ED KKD LK Sbjct 49 MMIEDIKKDFHKSLK 63 Range 9: 134 to 159 Score:37.4 bits(85), Expect:2e-20, Method:Compositional matrix adjust., Identities:17/26(65%), Positives:23/26(88%), Gaps:0/26(0%) Query 30222 QEIEERISEAEDTTQNIETTIKDNVK 30145 QE+EERIS AED+ +NI+TT+K+N K Sbjct 134 QEMEERISGAEDSIENIDTTVKENTK 159 Range 10: 313 to 356 Score:72.8 bits(177), Expect:1e-10, Method:Compositional matrix adjust., Identities:33/44(75%), Positives:38/44(86%), Gaps:0/44(0%) Query 65620 DGETKIFHDKTKFTQYLSTNPALQRIISGKAQNKEARYTLEKPR 65489 DGETK+FHDKTKFTQYLSTNPALQRII+ K Q K+ + LE+PR Sbjct 313 DGETKVFHDKTKFTQYLSTNPALQRIITEKKQYKDGNHALEQPR 356 >RecName: Full=Endogenous retrovirus group K member 19 Pol protein; AltName: Full=HERV-K(C19) Pol protein; AltName: Full=HERV-K_19q11 provirus ancestral Pol protein; Includes: RecName: Full=Reverse transcriptase; Short=RT; Includes: RecName: Full=Ribonuclease H; Short=RNase H; Includes: RecName: Full=Integrase; Short=IN [Homo sapiens] Sequence ID: Q9WJR5.2 Length: 959 Range 1: 127 to 440 Score:227 bits(578), Expect:4e-79, Method:Compositional matrix adjust., Identities:132/315(42%), Positives:180/315(57%), Gaps:3/315(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 127 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 186 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R++F IIH++DDIL +A+ L Y + + N L IA +K+Q YL Sbjct 187 REKFSDCYIIHYIDDILCAAEMKDKLIDCYTFLQAEVANAGLAIASDKIQTSTPFHYLEM 246 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 +I I P KIE+RKD LKTL+DFQKLLG INWI+P + +P + L+ IL+GDS L Sbjct 247 QIENRKIKPPKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPTYAMSNLFSILRGDSDLN 306 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQGPLL-WIY 23268 S R LT +A ++ VE+ ++ A + R + L I T TG++ Q L+ W + Sbjct 307 SKRMLTPEATKEIKLVEEKIQSAQINRIDPLAPLQLLIFATAHSPTGIIIQNTDLVEWSF 366 Query 23267 -PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQVETLCALIDDWAI 23091 PH S KT Y +A L I+ G P KI++P T QV W I Sbjct 367 LPH-STVKTFTLYLDQMATLIGQTRLRIIKLCGNDPDKIVVPLTKEQVRQAFINSGAWQI 425 Query 23090 LCCSFDGEFDNHYPK 23046 +F G DNHYPK Sbjct 426 GLANFVGIIDNHYPK 440 Range 2: 7 to 131 Score:97.4 bits(241), Expect:4e-79, Method:Compositional matrix adjust., Identities:67/125(54%), Positives:88/125(70%), Gaps:8/125(6%) Query 24321 RSRF-FLGAIE----GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPST 24157 R+R FLGA IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS Sbjct 7 RNRVSFLGAATVEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSF 66 Query 24156 SPWNTLIFVIKKKSEKWQL*HDLR---AINSQMQIMGRIQRGLPPLSSipgdwpiiiidI 23986 SPWN+ +FVI+KKS KW++ DLR A+N+ +Q MG +Q GLP L+ IP DWP+IIID+ Sbjct 67 SPWNSPVFVIQKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDL 126 Query 23985 KDCFL 23971 KDCF Sbjct 127 KDCFF 131 Range 3: 652 to 855 Score:159 bits(402), Expect:1e-36, Method:Compositional matrix adjust., Identities:92/205(45%), Positives:115/205(56%), Gaps:7/205(3%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 LWQMDVTH+S FG L Y HV+VDT S I AT TGE + H L +A G + +K Sbjct 652 LWQMDVTHVSSFGRLSYIHVTVDTYSHFIWATCQTGESTSHVKKHLLSCFAVMGVPEKIK 711 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQK--GGIAYG 22039 TDNGP Y +K+F F ++ HTTG+PYN QGQ IVE+ +RTLK L KQK G Sbjct 712 TDNGPGYCSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVKQKEGGDSKEC 771 Query 22038 RTPREQLSLALFTRNFL-ILDAHGCSAADRHAATK---PMTNADVKWKDVLTGEWCGPDP 21871 TP+ QL+LAL+T NFL I ++A++H K P + WKD W Sbjct 772 TTPQMQLNLALYTLNFLNIYRNQTTTSAEQHLTGKKNSPHEGKLIWWKDNKNKTW-EIGK 830 Query 21870 VILRSRGAVCVFP*NQDNPIWVPER 21796 VI RG CV P P+W+P R Sbjct 831 VITWGRGFACVSPGENQLPVWIPTR 855 Range 4: 492 to 661 Score:90.1 bits(222), Expect:2e-15, Method:Compositional matrix adjust., Identities:59/177(33%), Positives:83/177(46%), Gaps:9/177(5%) Query 22885 QSRHPQITECKIVLEVFKRFHDSFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLEL- 22709 Q + Q E V+ V + F N+ISDSAYVV+ R +E A S L L Sbjct 492 QYQSAQRAELVAVITVLQDFDQPINIISDSAYVVQATRDVETALIKYSMDDQLNQLFNLL 551 Query 22708 QKLIWARKNKFFIQHIRVHTNLPGPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHV 22529 Q+ + R F+I HIR HTNLPGP+ N D + ++ + +E H HV Sbjct 552 QQTVRKRNFPFYITHIRAHTNLPGPLTKANEQAD-------LLVSSALIKAQELHALTHV 604 Query 22528 PAFTLQQKFKISRAAARNVVLSCQNCVQFH-PLPQVGINPRGPSAKTLADGCHTHIS 22361 L+ KF ++ A+++V C C H P + G+NPRG L TH+S Sbjct 605 NVAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHVS 661 >RecName: Full=Intracisternal A-particle Gag-related polyprotein; Contains: RecName: Full=Phosphorylated protein; Contains: RecName: Full=Capsid protein; Contains: RecName: Full=Nucleocapsid protein; Contains: RecName: Full=Protease; Flags: Precursor [Mouse intracisternal A-particle MIA14] Sequence ID: P11365.2 Length: 827 Range 1: 120 to 549 Score:281 bits(718), Expect:1e-76, Method:Compositional matrix adjust., Identities:173/445(39%), Positives:240/445(53%), Gaps:47/445(10%) Query 26402 SDSELSDNDLVDLEAEAARYEKEIYHP--------------------DWPHVYAMQEQAK 26283 +D E S + D E EAA YEK+ Y P DWP Q Sbjct 120 ADEEFSSEE-TDWEEEAAHYEKKGYQPGKVLANQLRKPKAAGEGQFADWP-------QGS 171 Query 26282 ELDEKaiipmappapPYNFQCQRMVKPAGGTSFCP-EVWK*LGLSFPVFLDVNGQQHHEP 26106 L P ++ K SF P E + + +FPVF G + H P Sbjct 172 RLQGPPYAESPPCVVRQPCAERQCAKRQCADSFIPREEQRKIQQAFPVFEGAEGGRVHAP 231 Query 26105 VDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLSP-GKYLDWKSF 25929 V++ IK+LA+SV+ YG NA F + Q++ L LTP DW ++ +A L GKY++W++ Sbjct 232 VEYLQIKELAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPMMGKYMEWRAL 291 Query 25928 LYENANTQAAINLASGADPQRHWDADMLLGIGRFALDQTGYPDLVYSQINEIAIKAWKAL 25749 +E A QA N A+ QR W D+L G G ++ DQT Y Y+QI+ AI+ WK L Sbjct 292 WHETAQAQARANAAALTPEQRDWTFDLLTGQGAYSADQTNYHWGAYAQISSTAIRRWKGL 351 Query 25748 PNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCST 25569 G +G LTKV+QGP E FSDFVA + E+A +IFG+ + PLI+QL+YEQ TK+C Sbjct 352 SRAGETTGQLTKVVQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQLIYEQATKECRA 411 Query 25568 AITPYKHKGLEVWMKVCREIGGPLTNVGLAAAMIQLKRKST----METCFRCGRKGHYRS 25401 AI P K+KGL+ W++VCRE+GGPLTN GLAAA++Q + +S TCF CG+ GH++ Sbjct 412 AIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQNRSMSRNDQRTCFNCGKPGHFKK 471 Query 25400 QC--PDRSGEQSNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLAT--GYGGAQPKKQ 25233 C PD+ G LC +C KG H A++CRS++D+ GR L PK Sbjct 472 DCRAPDKQGGTLT-------LCSKCGKGYHRADQCRSVRDIKGRVLPPPDSQSAYVPKNG 524 Query 25232 TNVPRA--LKYMGLYRTTGRDKTNR 25164 ++ PR+ LK MG + R ++ R Sbjct 525 SSGPRSQGLKDMGTGLSGPRKQSER 549 Range 2: 540 to 776 Score:182 bits(461), Expect:4e-50, Method:Compositional matrix adjust., Identities:100/243(41%), Positives:147/243(60%), Gaps:11/243(4%) Query 25153 FSSPSKGPRRATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGR-SSS 24977 S P K R + + +DL + + +L PQM +QP+ + LP T+GL+LGR S+S Sbjct 540 LSGPRKQSERRPRKTHKVDLRAASDFLLMPQMSIQPVPVEPIPSLPLGTMGLILGRGSAS 599 Query 24976 ALKGLQIVPGVIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRG 24797 L+GL + P + + +VL +SP+G+ +IS GDRI QLLLL P R + Sbjct 600 TLQGLVVHPELWIVNIPQKYQVLCSSPKGVFSISKGDRIPQLLLL------LPDNTREKS 653 Query 24796 DG----GLGSTGSRFAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWP 24629 G +GS+G+ A++ + + P L L + G F G+LDTGAD+S+IS H WP WP Sbjct 654 AGPEIKKMGSSGNDSAYLVVSLNDRPKLRLKINGKEFEGILDTGADKSIISTHWWPKAWP 713 Query 24628 TQTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGKITPYIIDIPVTLWGRDVLINLDMRL 24449 T SS +L GLGY+ P +SS LTW+ +EG+ GK PY++ +PV LWGRD++ +L + L Sbjct 714 TTESSHSLQGLGYQSCPTISSVALTWESSEGQQGKFIPYVLPLPVNLWGRDIMQHLGLIL 773 Query 24448 TNE 24440 +NE Sbjct 774 SNE 776 Range 3: 786 to 826 Score:46.2 bits(108), Expect:4e-50, Method:Compositional matrix adjust., Identities:21/41(51%), Positives:28/41(68%), Gaps:0/41(0%) Query 24431 QAKDMMIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLGF 24309 +AK++M KMGY KGLG QG+ +P+ N +DR GLGF Sbjct 786 KAKNIMAKMGYKEGKGLGHQEQGRIEPISPNGNQDRQGLGF 826 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Schmidt-Ruppin B] Sequence ID: O92956.2 Length: 1603 Range 1: 817 to 1089 Score:170 bits(430), Expect:4e-68, Method:Compositional matrix adjust., Identities:99/276(36%), Positives:150/276(54%), Gaps:8/276(2%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPLA QD FAFTLPS+NN+ P + +QW VL QGM SPT+CQL V Q L+P+ Sbjct 817 KDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPL 876 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + P LR++H+MDD+LL+A LE A +V+ LE I+P+K+Q +YLG Sbjct 877 RLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVINTLERAGFTISPDKIQREPGVQYLGY 936 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 K+ ++P + + + + TL D QKL+GS+ W++P + +P + P YE L+G S Sbjct 937 KLGSTYVAPVGL-VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRG-SDPN 994 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQ-----GPL 23280 R D + + R++ + A L R+ + ++R + GVL Q P Sbjct 995 EAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVVRCEQGAIGVLGQGLSTHPRPC 1054 Query 23279 LWIYPHISPNKTLEYYPSAVAQLAMLGVKSCIQHFG 23172 LW++ P K + + L S ++ FG Sbjct 1055 LWLF-STQPTKAFTAWLEVLTLLITKLRASAVRTFG 1089 Range 2: 704 to 821 Score:94.4 bits(233), Expect:4e-68, Method:Compositional matrix adjust., Identities:54/118(46%), Positives:80/118(67%), Gaps:1/118(0%) Query 24321 RSRFFLGAIEGGIPITWKTEEH-MWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWN 24145 R+ A+ IP+ WK + +WI Q PL KL A +LV ++LQLGHI+PS S WN Sbjct 704 RATVLTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWN 763 Query 24144 TLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 T +FVI+K S ++L HDLRA+N+++ G +Q+G P LS++P WP++++D+KDCF Sbjct 764 TPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFF 821 Range 3: 611 to 700 Score:45.1 bits(105), Expect:4e-68, Method:Compositional matrix adjust., Identities:30/91(33%), Positives:48/91(52%), Gaps:8/91(8%) Query 24694 GLLDTGADRSVISVHDWPPRWP-TQTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGKIT 24518 LLD+GAD ++IS DWP WP T++ + G+G + P+ S+++ R G + Sbjct 611 ALLDSGADITIISEEDWPTDWPVVDTANPQIHGIGGGI-PMRKSRDMIELGVINRDGSLE 669 Query 24517 ------PYIIDIPVTLWGRDVLINLDMRLTN 24443 P + + ++ GRD L L +RLTN Sbjct 670 RPLLLFPAVAMVRGSILGRDCLQGLGLRLTN 700 Range 4: 237 to 549 Score:83.6 bits(205), Expect:3e-13, Method:Compositional matrix adjust., Identities:89/327(27%), Positives:139/327(42%), Gaps:55/327(16%) Query 26156 LSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSL 25977 ++ PV + G P++ K I +LAD+V+T G+ + +A++EAL L P D +L Sbjct 237 VAMPVVIKTEGPAW-TPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNL 295 Query 25976 ARACLSPGKYLDWKSFLYENANTQAAI------NLASGADPQRHWDADMLLGI------- 25836 R L P Y W T A + A+G + D L G+ Sbjct 296 MRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLDRLKGLADGMVGN 355 Query 25835 --GRFALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIV 25662 G+ AL + G +LV I A++A++ + +G + QGP+E F DF ++ Sbjct 356 PQGQAALLRPG--ELV--AITASALQAFREVARLAEPAGPWADITQGPSESFVDFANRLI 411 Query 25661 ESATKIFGDPDTVMPLIKQLVYEQCTKDC--------STAITPYKHKGLEVWMKVCREIG 25506 ++ P P+I ++ D ST TP G + + R+ Sbjct 412 KAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTP----GEIIKYVLDRQKI 467 Query 25505 GPLTNVGLAAAM---IQ------LKRKSTMET---------CFRCGRKGHYRSQCPDRSG 25380 PLT+ G+AAAM IQ + R+ +T C+ CG GHY++QCP + Sbjct 468 APLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARRLCYTCGSPGHYQAQCPKKR- 526 Query 25379 EQSNSRPPQPRLCPRCKKGNHWANECR 25299 + NSR C C H A +CR Sbjct 527 KSGNSR----ERCQLCDGMGHNAKQCR 549 Range 5: 1338 to 1553 Score:81.3 bits(199), Expect:1e-12, Method:Compositional matrix adjust., Identities:65/219(30%), Positives:101/219(46%), Gaps:8/219(3%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L++WQ D T + + V+VDT S I T + A H A G+ + Sbjct 1338 LQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKA 1397 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAY- 22042 +KTDNG +T+KS + + HTTG+P N QGQ +VE+A+R LK+ ++ G + Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFM 1457 Query 22041 GRTPR----EQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGPD 21874 R P E L+ A++ N + + +H +T + TGEW Sbjct 1458 KRIPASKQGELLAKAMYALNHFERGENTKTPVQKHWRPTVLTEGPPVKIRIETGEWEKGW 1517 Query 21873 PVILRSRGAVCVFP*NQDNPIWVPERLTRKLPPSIPEDE 21757 V++ RG V + D IWVP +RK+ P I + + Sbjct 1518 NVLVWGRGYAAVKNRDTDKVIWVP---SRKVKPDITQKD 1553 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=p3; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Nucleocapsid protein p12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus (strain Schmidt-Ruppin A)] Sequence ID: Q04095.2 Length: 1603 Range 1: 817 to 1089 Score:169 bits(427), Expect:9e-68, Method:Compositional matrix adjust., Identities:99/276(36%), Positives:149/276(53%), Gaps:8/276(2%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPLA QD FAFTLPS+NN+ P + +QW VL QGM SPT+CQL V Q L+P+ Sbjct 817 KDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPL 876 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + P LR++H+MDD+LL+A LE A +V+ LE I+P+K+Q +YLG Sbjct 877 RLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQREPGVQYLGY 936 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 K+ ++P + + + + TL D QKL+GS+ W++P + +P + P YE L+G S Sbjct 937 KLGSTYVAPVGL-VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRG-SDPN 994 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQ-----GPL 23280 R D + + R++ + A L R+ + + R + GVL Q P Sbjct 995 EAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGVLGQGLSTHPRPC 1054 Query 23279 LWIYPHISPNKTLEYYPSAVAQLAMLGVKSCIQHFG 23172 LW++ P K + + L S ++ FG Sbjct 1055 LWLF-STQPTKAFTAWLEVLTLLITKLRASAVRTFG 1089 Range 2: 704 to 821 Score:94.4 bits(233), Expect:9e-68, Method:Compositional matrix adjust., Identities:54/118(46%), Positives:80/118(67%), Gaps:1/118(0%) Query 24321 RSRFFLGAIEGGIPITWKTEEH-MWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWN 24145 R+ A+ IP+ WK + +WI Q PL KL A +LV ++LQLGHI+PS S WN Sbjct 704 RATVLTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWN 763 Query 24144 TLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 T +FVI+K S ++L HDLRA+N+++ G +Q+G P LS++P WP++++D+KDCF Sbjct 764 TPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFF 821 Range 3: 611 to 700 Score:44.3 bits(103), Expect:9e-68, Method:Compositional matrix adjust., Identities:29/91(32%), Positives:48/91(52%), Gaps:8/91(8%) Query 24694 GLLDTGADRSVISVHDWPPRWPT-QTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGKIT 24518 LLD+GAD ++IS DWP WP + ++ + G+G + P+ S+++ R G + Sbjct 611 ALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGI-PMRKSRDMIEVGVINRDGSLE 669 Query 24517 ------PYIIDIPVTLWGRDVLINLDMRLTN 24443 P + + ++ GRD L L +RLTN Sbjct 670 RPLLLFPAVAMVRGSILGRDCLQGLGLRLTN 700 Range 4: 237 to 549 Score:83.2 bits(204), Expect:3e-13, Method:Compositional matrix adjust., Identities:89/327(27%), Positives:139/327(42%), Gaps:55/327(16%) Query 26156 LSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSL 25977 ++ PV + G P++ K I +LAD+V+T G+ + +A++EAL L P D +L Sbjct 237 VAMPVVIKTEGPAW-TPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNL 295 Query 25976 ARACLSPGKYLDWKSFLYENANTQAAI------NLASGADPQRHWDADMLLGI------- 25836 R L P Y W T A + A+G + D L G+ Sbjct 296 MRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQGRGERTNLDRLKGLADGMVGN 355 Query 25835 --GRFALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIV 25662 G+ AL + G +LV I A++A++ + +G + QGP+E F DF ++ Sbjct 356 PQGQAALLRPG--ELV--AITASALQAFREVARLAEPAGPWADITQGPSESFVDFANRLI 411 Query 25661 ESATKIFGDPDTVMPLIKQLVYEQCTKDC--------STAITPYKHKGLEVWMKVCREIG 25506 ++ P P+I ++ D ST TP G + + R+ Sbjct 412 KAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTP----GEIIKYVLDRQKI 467 Query 25505 GPLTNVGLAAAM---IQ------LKRKSTMET---------CFRCGRKGHYRSQCPDRSG 25380 PLT+ G+AAAM IQ + R+ +T C+ CG GHY++QCP + Sbjct 468 APLTDQGIAAAMSSAIQPLVMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKR- 526 Query 25379 EQSNSRPPQPRLCPRCKKGNHWANECR 25299 + NSR C C H A +CR Sbjct 527 KSGNSR----ERCQLCDGMGHNAKQCR 549 Range 5: 1338 to 1553 Score:80.5 bits(197), Expect:3e-12, Method:Compositional matrix adjust., Identities:64/219(29%), Positives:101/219(46%), Gaps:8/219(3%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L++WQ D T + + V+VDT S I T + A H A G+ + Sbjct 1338 LQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKA 1397 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAY- 22042 +KTDNG +T+KS + + HTTG+P N QGQ +VE+A+R LK+ ++ G + Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFM 1457 Query 22041 GRTPR----EQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGPD 21874 R P E L+ A++ N + + +H +T + TGEW Sbjct 1458 KRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGW 1517 Query 21873 PVILRSRGAVCVFP*NQDNPIWVPERLTRKLPPSIPEDE 21757 V++ RG V + D IWVP +RK+ P + + + Sbjct 1518 NVLVWGRGYAAVKNRDTDKVIWVP---SRKVKPDVTQKD 1553 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=p2A; Contains: RecName: Full=p2B; Contains: RecName: Full=p10; Contains: RecName: Full=Capsid protein p27, alternate cleaved 1; Contains: RecName: Full=Capsid protein p27, alternate cleaved 2; Contains: RecName: Full=Spacer peptide; Short=SP; AltName: Full=p3; Contains: RecName: Full=Nucleocapsid protein p12; Contains: RecName: Full=Protease p15; Contains: RecName: Full=Reverse transcriptase beta-subunit; Short=RT-beta; Contains: RecName: Full=Reverse transcriptase alpha-subunit; Short=RT-alpha; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32; Contains: RecName: Full=p4 [Rous sarcoma virus - Prague C] Sequence ID: P03354.2 Length: 1603 Range 1: 817 to 1089 Score:166 bits(420), Expect:8e-67, Method:Compositional matrix adjust., Identities:99/276(36%), Positives:148/276(53%), Gaps:8/276(2%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPLA QD FAFTLPS+NN+ P + +QW VL QGM SPT+CQL V Q L+P+ Sbjct 817 KDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPL 876 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + P L ++H+MDD+LL+A LE A +V+ LE I+P+KVQ +YLG Sbjct 877 RLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGY 936 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 K+ ++P + + + + TL D QKL+GS+ W++P + +P + P YE L+G S Sbjct 937 KLGSTYVAPVGL-VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRG-SDPN 994 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQ-----GPL 23280 R D + + R++ + A L R+ + + R + GVL Q P Sbjct 995 EAREWNLDMKMAWREIVRLSTTAALERWDPALPLEGAVARCEQGAIGVLGQGLSTHPRPC 1054 Query 23279 LWIYPHISPNKTLEYYPSAVAQLAMLGVKSCIQHFG 23172 LW++ P K + + L S ++ FG Sbjct 1055 LWLF-STQPTKAFTAWLEVLTLLITKLRASAVRTFG 1089 Range 2: 704 to 821 Score:94.4 bits(233), Expect:8e-67, Method:Compositional matrix adjust., Identities:54/118(46%), Positives:80/118(67%), Gaps:1/118(0%) Query 24321 RSRFFLGAIEGGIPITWKTEEH-MWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWN 24145 R+ A+ IP+ WK + +WI Q PL KL A +LV ++LQLGHI+PS S WN Sbjct 704 RATVLTVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWN 763 Query 24144 TLIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 T +FVI+K S ++L HDLRA+N+++ G +Q+G P LS++P WP++++D+KDCF Sbjct 764 TPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFF 821 Range 3: 611 to 700 Score:44.3 bits(103), Expect:8e-67, Method:Compositional matrix adjust., Identities:29/91(32%), Positives:48/91(52%), Gaps:8/91(8%) Query 24694 GLLDTGADRSVISVHDWPPRWPT-QTSSQALCGLGYEMAPLLSSKELTWKDAEGRSGKIT 24518 LLD+GAD ++IS DWP WP + ++ + G+G + P+ S+++ R G + Sbjct 611 ALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGI-PMRKSRDMIELGVINRDGSLE 669 Query 24517 ------PYIIDIPVTLWGRDVLINLDMRLTN 24443 P + + ++ GRD L L +RLTN Sbjct 670 RPLLLFPAVAMVRGSILGRDCLQGLGLRLTN 700 Range 4: 237 to 549 Score:85.5 bits(210), Expect:6e-14, Method:Compositional matrix adjust., Identities:88/326(27%), Positives:141/326(43%), Gaps:53/326(16%) Query 26156 LSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSL 25977 ++ PV + G P++ K I +LAD+V+T G+ + +A++EAL L P D +L Sbjct 237 VAMPVVIKTEGPAW-TPLEPKLITRLADTVRTKGLRSPITMAEVEALMSSPLLPHDVTNL 295 Query 25976 ARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWD----------------ADML 25845 R L P Y W T A A+ DP+ + AD + Sbjct 296 MRVILGPAPYALWMDAWGVQLQTVIA---AATRDPRHPANGQGRGERTNLNRLKGLADGM 352 Query 25844 LG--IGRFALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVA 25671 +G G+ AL + G +LV I A++A++ + +G ++QGP+E F DF Sbjct 353 VGNPQGQAALLRPG--ELV--AITASALQAFREVARLAEPAGPWADIMQGPSESFVDFAN 408 Query 25670 PIVESATKIFGDPDTVMPLIKQLVYEQCTKDCS----TAITPYKHKGLEVWMKVCREIGG 25503 ++++ P P+I ++ D TA + G + + R+ Sbjct 409 RLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTA 468 Query 25502 PLTNVGLAAAM---IQ------LKRKSTMET---------CFRCGRKGHYRSQCPDRSGE 25377 PLT+ G+AAAM IQ + R+ +T C+ CG GHY++QCP + + Sbjct 469 PLTDQGIAAAMSSAIQPLIMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKR-K 527 Query 25376 QSNSRPPQPRLCPRCKKGNHWANECR 25299 NSR C C H A +CR Sbjct 528 SGNSR----ERCQLCNGMGHNAKQCR 549 Range 5: 1338 to 1553 Score:79.3 bits(194), Expect:5e-12, Method:Compositional matrix adjust., Identities:64/219(29%), Positives:100/219(45%), Gaps:8/219(3%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L++WQ D T + + V+VDT S I T + H A G+ + Sbjct 1338 LQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKA 1397 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAY- 22042 +KTDNG +T+KS + + HTTG+P N QGQ +VE+A+R LK+ ++ G + Sbjct 1398 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFM 1457 Query 22041 GRTPR----EQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGPD 21874 R P E L+ A++ N + + +H +T + TGEW Sbjct 1458 KRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGW 1517 Query 21873 PVILRSRGAVCVFP*NQDNPIWVPERLTRKLPPSIPEDE 21757 V++ RG V + D IWVP +RK+ P I + + Sbjct 1518 NVLVWGRGYAAVKNRDTDKVIWVP---SRKVKPDITQKD 1553 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; AltName: Full=Pr78; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Mason-Pfizer monkey virus] Sequence ID: P07567.3 Length: 657 Range 1: 12 to 607 Score:233 bits(595), Expect:3e-62, Method:Compositional matrix adjust., Identities:180/608(30%), Positives:263/608(43%), Gaps:81/608(13%) Query 26870 LSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG---KDLDRETS 26700 + L++ L R +K++ LL F D PWF G++ ++ W +VG +D Sbjct 12 VEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFG 71 Query 26699 EGKLKPGKKLLWHMVHACLEDKQCEEAVRTGQKILTEQQESMSegekvlkegkkrkggke 26520 K+ W+++ ++ K+ V E +S S+ + Sbjct 72 PEKVPVTAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLTKTSQNPDLDLIS 131 Query 26519 vkektektkeRIDRDRGNNQDLETKKIYPSLKALTLGMSSDSELSDNDLVDLEAEAARYE 26340 + E K +D+G + + K+ L A T D S+ D LE EAA+Y Sbjct 132 LDSDDEGAKSSSLQDKGLSSTKKPKRFPVLLTAQTSKDPEDPNPSEVDWDGLEDEAAKY- 190 Query 26339 KEIYHPDWP-----------------HVYAMQEQAKELDEKaiipmappapPYNFQC--- 26220 ++PDWP V A+ +EL EK Q Sbjct 191 ---HNPDWPPFLTRPPPYNKATPSAPTVMAVVNPKEELKEKIAQLEEQIKLEELHQALIS 247 Query 26219 ---------QRMVKP--AGGTSFCPEVWK*LGLS------------------FPVFLDVN 26127 + + P AGG S P W + FPV V+ Sbjct 248 KLQKLKTGNETVTHPDTAGGLSRTPH-WPGQHIPKGKCCASREKEEQIPKDIFPVTETVD 306 Query 26126 GQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLS 25959 GQ +HH DF IK+L + YG A + +A +E++ LTP DW +L RA LS Sbjct 307 GQGQAWRHHNGFDFAVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWNTLVRAVLS 366 Query 25958 PGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTGYPDLVYSQ 25785 G +L WKS +EN A N +G WD DML G G ++ Q Y +++Q Sbjct 367 GGDHLLWKSEFFENCRDTAKRNQQAG----NGWDFDMLTGSGNYSSTDAQMQYDPGLFAQ 422 Query 25784 INEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQ 25605 I A KAW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG + + +KQ Sbjct 423 IQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQ 482 Query 25604 LVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA----------MIQLK 25458 L YE C AI PY+ K L ++++C +I GP GLA A + K Sbjct 483 LAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQTVKDFLNNK 541 Query 25457 RKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANECRSIKDLDG 25278 K CF+CG+KGH+ C + + +N+ P P LCPRCK+G HWANEC+S D G Sbjct 542 NKEKGGCCFKCGKKGHFAKNCHEHA--HNNAEPKVPGLCPRCKRGKHWANECKSKTDNQG 599 Query 25277 RTLATGYG 25254 + G Sbjct 600 NPIPPHQG 607 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN; AltName: Full=pp32 [Avian leukosis virus] Sequence ID: Q7SQ98.1 Length: 895 Range 1: 109 to 381 Score:169 bits(427), Expect:2e-60, Method:Compositional matrix adjust., Identities:99/276(36%), Positives:149/276(53%), Gaps:8/276(2%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F+SIPLA QD FAFTLPS+NN+ P + +QW VL QGM SPT+CQL V Q L+P+ Sbjct 109 KDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPL 168 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGT 23625 R + P LR++H+MDD+LL+A LE A +V+ LE I+P+K+Q +YLG Sbjct 169 RLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKIQREPGVQYLGY 228 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 K+ ++P + + + + TL D QKL+GS+ W++P + +P + P YE L+G S Sbjct 229 KLGSTYVAPVGL-VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRG-SDPN 286 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQQ-----GPL 23280 R D + + R++ + A L R+ + + R + GVL Q P Sbjct 287 EAREWNLDMKMAWREIVQLSTTAALERWDPALPLEGAVARCEQGAIGVLGQGLSTHPRPC 346 Query 23279 LWIYPHISPNKTLEYYPSAVAQLAMLGVKSCIQHFG 23172 LW++ P K + + L S ++ FG Sbjct 347 LWLF-STQPTKAFTAWLEVLTLLITKLRASAVRTFG 381 Range 2: 3 to 113 Score:94.0 bits(232), Expect:2e-60, Method:Compositional matrix adjust., Identities:53/111(48%), Positives:78/111(70%), Gaps:1/111(0%) Query 24300 AIEGGIPITWKTEEH-MWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIK 24124 A+ IP+ WK + +WI Q PL KL A +LV ++LQLGHI+PS S WNT +FVI+ Sbjct 3 ALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIR 62 Query 24123 KKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 K S ++L HDLRA+N+++ G +Q+G P LS++P WP++++D+KDCF Sbjct 63 KASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFF 113 Range 3: 630 to 845 Score:82.0 bits(201), Expect:6e-13, Method:Compositional matrix adjust., Identities:65/219(30%), Positives:101/219(46%), Gaps:8/219(3%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L++WQ D T + + V+VDT S I T + A H A G+ + Sbjct 630 LQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKA 689 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAY- 22042 +KTDNG +T+KS + + HTTG+P N QGQ +VE+A+R LK+ ++ G + Sbjct 690 IKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFM 749 Query 22041 GRTPR----EQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADVKWKDVLTGEWCGPD 21874 R P E L+ A++ N + + +H +T + TGEW Sbjct 750 KRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGW 809 Query 21873 PVILRSRGAVCVFP*NQDNPIWVPERLTRKLPPSIPEDE 21757 V++ RG V + D IWVP +RK+ P I + + Sbjct 810 NVLVWGRGYAAVKNRDTDKVIWVP---SRKVKPDITQKD 845 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Simian retrovirus 1] Sequence ID: P04022.3 Length: 658 Range 1: 300 to 608 Score:214 bits(546), Expect:7e-56, Method:Compositional matrix adjust., Identities:124/316(39%), Positives:166/316(52%), Gaps:24/316(7%) Query 26150 FPVFLDVNGQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWG 25983 FPV V+GQ +HH DF IK+L + YG A + +A +E++ LTP DW Sbjct 300 FPVTETVDGQGQAWRHHNGFDFTVIKELKTAASQYGATAPYTLAIVESVADNWLTPTDWN 359 Query 25982 SLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTG 25809 +L RA LS G +L WKS +EN A N +G WD DML G G ++ Q Sbjct 360 TLVRAVLSGGDHLLWKSEFFENCRETAKRNQQAG----NGWDFDMLTGSGNYSSTDAQMQ 415 Query 25808 YPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPD 25629 Y +++QI A KAW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG + Sbjct 416 YDPGLFAQIQAAATKAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAE 475 Query 25628 TVMPLIKQLVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA------- 25473 + +KQL YE C AI PY+ K L ++++C +I GP GLA A Sbjct 476 AGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQT 534 Query 25472 ---MIQLKRKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANEC 25302 + K K CF+CGRKGH+ C + +NS P LCPRCK+G HWANEC Sbjct 535 VKDFLNNKNKEKGGCCFKCGRKGHFAKNCHEHI--HNNSETKAPGLCPRCKRGKHWANEC 592 Query 25301 RSIKDLDGRTLATGYG 25254 +S D G L G Sbjct 593 KSKTDSQGNPLPPHQG 608 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Simian retrovirus 2] Sequence ID: P51516.3 Length: 654 Range 1: 297 to 605 Score:213 bits(542), Expect:2e-55, Method:Compositional matrix adjust., Identities:124/317(39%), Positives:169/317(53%), Gaps:25/317(7%) Query 26150 FPVFLDVNGQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWG 25983 FPV ++GQ +HH DF IK+L +V YG A + +A +E++ LTP DW Sbjct 297 FPVTETMDGQGQAWRHHNGFDFTVIKELKTAVSQYGATAPYTLAIVESIADNWLTPTDWN 356 Query 25982 SLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTG 25809 +L RA LS G +L WKS +EN A N +G WD DML G G +A Q Sbjct 357 TLVRAVLSGGDHLIWKSEFFENCRDTAKRNQQAG----NGWDFDMLTGSGNYANTDAQMQ 412 Query 25808 YPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPD 25629 Y +++QI A AW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG+ + Sbjct 413 YDPGLFAQIQAAATNAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGNAE 472 Query 25628 TVMPLIKQLVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA------- 25473 + +KQL YE C AI PY+ K L ++++C +I GP GLA A Sbjct 473 AGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQT 531 Query 25472 ---MIQLKRKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANEC 25302 ++ K K CF+CG+KGH+ C D S + S+ P LCPRCK+G HWANEC Sbjct 532 VKDLLNNKNKD-RGGCFKCGKKGHFAKDCRDHSNKNPESK--VPGLCPRCKRGKHWANEC 588 Query 25301 RSIKDLDGRTLATGYGG 25251 +S D G L G Sbjct 589 KSKTDSQGNPLPPHQGN 605 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Simian retrovirus 2] Sequence ID: P51518.2 Length: 908 Range 1: 297 to 599 Score:213 bits(541), Expect:1e-53, Method:Compositional matrix adjust., Identities:123/311(40%), Positives:168/311(54%), Gaps:25/311(8%) Query 26150 FPVFLDVNGQ----QHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWG 25983 FPV ++GQ +HH DF IK+L +V YG A + +A +E++ LTP DW Sbjct 297 FPVTETMDGQGQAWRHHNGFDFTVIKELKTAVSQYGATAPYTLAIVESIADNWLTPTDWN 356 Query 25982 SLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRFALD--QTG 25809 +L RA LS G +L WKS +EN A N +G WD DML G G +A Q Sbjct 357 TLVRAVLSGGDHLIWKSEFFENCRDTAKRNQQAG----NGWDFDMLTGSGNYANTDAQMQ 412 Query 25808 YPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPD 25629 Y +++QI A AW+ LP +G +LT V QGP EPF+DFV ++ +A +IFG+ + Sbjct 413 YDPGLFAQIQAAATNAWRKLPVKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGNAE 472 Query 25628 TVMPLIKQLVYEQCTKDCSTAITPYKHK-GLEVWMKVCREIGGPLTNVGLAAA------- 25473 + +KQL YE C AI PY+ K L ++++C +I GP GLA A Sbjct 473 AGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDI-GPSYQQGLAMAAAFSGQT 531 Query 25472 ---MIQLKRKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPRCKKGNHWANEC 25302 ++ K K CF+CG+KGH+ C D S + S+ P LCPRCK+G HWANEC Sbjct 532 VKDLLNNKNKD-RGGCFKCGKKGHFAKDCRDHSNKNPESK--VPGLCPRCKRGKHWANEC 588 Query 25301 RSIKDLDGRTL 25269 +S D G L Sbjct 589 KSKTDSQGNPL 599 Range 2: 636 to 861 Score:195 bits(496), Expect:8e-50, Method:Compositional matrix adjust., Identities:107/228(47%), Positives:140/228(61%), Gaps:3/228(1%) Query 25129 RRATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVP 24950 RA+ GSAGLDL STT +LTP+MG Q + T GPLP +T GL+LGR S+ +KGLQI P Sbjct 636 NRASPGSAGLDLCSTTHTVLTPEMGPQTLATGVYGPLPPNTFGLILGRGSTTVKGLQIYP 695 Query 24949 GVIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGS 24770 GVID DY G K++ + I I G+RIAQL+LLP L ++ RGD GS S Sbjct 696 GVIDNDYTGEFKIMARAISSIITIPQGERIAQLVLLPLLRTAHKIQHPYRGDKNFGS--S 753 Query 24769 RFAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGY 24590 ++ P L L ++G +F GL+DTGAD ++I DWP WPT + L G+G Sbjct 754 DIFWVQPITHQKPSLVLWLDGKAFTGLIDTGADVTIIKQEDWPSHWPTTETLTNLRGIGQ 813 Query 24589 EMAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDMRL 24449 P SSK LTWKD E SG I P++I ++PV LWGRD+L + + + Sbjct 814 SNNPRQSSKYLTWKDKENNSGLIKPFVIPNLPVNLWGRDLLSQMKIMM 861 Range 3: 872 to 906 Score:31.6 bits(70), Expect:8e-50, Method:Compositional matrix adjust., Identities:15/35(43%), Positives:19/35(54%), Gaps:0/35(0%) Query 24416 MIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLG 24312 M+ GY P KGLGK G P+ + + DR G G Sbjct 872 MLAQGYSPGKGLGKREDGILQPIPNSGQLDRKGFG 906 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=p4 [Jaagsiekte sheep retrovirus] Sequence ID: P31622.1 Length: 612 Range 1: 247 to 560 Score:206 bits(523), Expect:3e-53, Method:Compositional matrix adjust., Identities:127/324(39%), Positives:172/324(53%), Gaps:31/324(9%) Query 26177 EVWK*LGLSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLT 25998 EV L+FPVF + N Q+++E + FK +K+L + YG A F IA IE+LG L Sbjct 247 EVVSDFSLAFPVF-ENNNQRYYESLPFKQLKELKIACSQYGPTAPFTIAMIESLGTQALP 305 Query 25997 PGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF-AL 25821 P DW ARACLS G YL WKS +E A +N G +ML+G G + A Sbjct 306 PNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGI----QTSYEMLIGEGPYQAT 361 Query 25820 D-QTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKI 25644 D Q + Y+QI+ A +AWK LP+ + +L+KV QGP EP+ DFVA ++++ KI Sbjct 362 DTQLNFLPGAYAQISNAARQAWKKLPSSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKI 421 Query 25643 FGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAM 25470 D M L KQL +E C A+ PY+ KG L ++++C +I GP G+A AA Sbjct 422 MSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADI-GPSYMQGIAMAAA 480 Query 25469 IQLK-----------------RKSTMETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLC 25341 +Q K +KS CF CG+ GH + CP + N+ P LC Sbjct 481 LQGKSIKEVLFQQQARNKKGLQKSGNSGCFVCGQPGHRAAVCPQKHQTSVNT----PNLC 536 Query 25340 PRCKKGNHWANECRSIKDLDGRTL 25269 PRCKKG HWA +CRS D+ G L Sbjct 537 PRCKKGKHWARDCRSKTDVQGNPL 560 Range 2: 1 to 107 Score:46.6 bits(109), Expect:0.032, Method:Compositional matrix adjust., Identities:34/108(31%), Positives:52/108(48%), Gaps:5/108(4%) Query 26897 MGNSHSTPL-LSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVGK 26721 MG++HS L + L +L R + + K L++FL PWF G++ L W KVG+ Sbjct 1 MGHTHSRQLFVHMLSVMLKHRGITVSKTKLINFLSFIEEVCPWFPREGTVNLETWKKVGE 60 Query 26720 DLDRE-TSEGKLK-PGKKL-LWHMVHACLEDKQCEEAVRTGQKILTEQ 26586 + T G K P + L W ++ CL D +E R G + E+ Sbjct 61 QIRTHYTLHGPEKVPVETLSFWTLIRDCL-DFDNDELKRLGNLLKQEE 107 >RecName: Full=IgE-binding protein [Mus musculus] Sequence ID: P03975.1 Length: 557 Range 1: 204 to 421 Score:169 bits(429), Expect:2e-41, Method:Compositional matrix adjust., Identities:94/223(42%), Positives:135/223(60%), Gaps:11/223(4%) Query 26189 SFCP-EVWK*LGLSFPVFLDVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALG 26013 SF P E + + +FPVF G + H PV++ IK++A+SV+ YG NA F + Q++ L Sbjct 204 SFIPREEQRKIQQAFPVFEGAEGGRVHAPVEYLQIKEIAESVRKYGTNANFTLVQLDRLA 263 Query 26012 RYCLTPGDWGSLARACL-SPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGI 25836 LTP DW ++ +A L S GKY++W++ +E A QA N A+ QR W D+L G Sbjct 264 GMALTPADWQTVVKAALPSMGKYMEWRALWHEAAQAQARANAAALTPEQRDWTFDLLTGQ 323 Query 25835 GRFALDQTGYPDLVYSQINEIAIKAWKALPNR----GAVSGNLTKVLQGPTEPFSDFVAP 25668 G ++ DQT Y Y+QI+ AI+ P R G +G LTK++QGP E FSDFVA Sbjct 324 GAYSADQTNYHWGAYAQISSTAIR-----PGRRSRAGETTGQLTKIIQGPQESFSDFVAR 378 Query 25667 IVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKGL 25539 + E+A +IFG+ + PLI+QL+YEQ TK+C +P K + L Sbjct 379 MTEAAERIFGESEQAAPLIEQLIYEQATKECRAVHSPKKEQRL 421 Range 2: 431 to 551 Score:131 bits(330), Expect:5e-29, Method:Compositional matrix adjust., Identities:69/121(57%), Positives:82/121(67%), Gaps:5/121(4%) Query 22239 AWGKSDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQ 22060 AWGK LKTDNGPAYT++ F FC+ M V H TGLPYNPQGQGIVE+AHRTLK L KQ Sbjct 431 AWGKPRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIKQ 490 Query 22059 KGGI---AYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATK--PMTNADVKWKDVLT 21895 K G R PR +SLALFT NFL +DAHG +AA+RH ++ PM + K ++ Sbjct 491 KRGTFEETVPRAPRVSVSLALFTLNFLNIDAHGHTAAERHVQSQIGPMRWLNGKMSLIIN 550 Query 21894 G 21892 G Sbjct 551 G 551 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide [Squirrel monkey retrovirus] Sequence ID: P21407.2 Length: 998 Range 1: 723 to 945 Score:146 bits(368), Expect:5e-40, Method:Compositional matrix adjust., Identities:86/225(38%), Positives:129/225(57%), Gaps:3/225(1%) Query 25126 RATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPG 24947 RAT GSAGLDL +TT +LT Q + GPLP T GL+L + KG+Q++PG Sbjct 723 RATAGSAGLDLCTTTDTILTTQNSPLTLPVGIYGPLPPQTFGLILAEPALPSKGIQVLPG 782 Query 24946 VIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSR 24767 ++D D+ G + +++++ + + I G R+AQ+++LP + RG GS S Sbjct 783 ILDNDFEGEIHIILSTTKDLVTIPKGTRLAQIVILPLQQINSNFHKPYRGASAPGS--SD 840 Query 24766 FAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYE 24587 ++ P L L + G F G+LDTGAD +VIS WP WP T + L G+G Sbjct 841 VYWVQQISQQRPTLKLKLNGKLFSGILDTGADATVISYTHWPRNWPLTTVATHLRGIGQA 900 Query 24586 MAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDM 24455 P S++ L W+D+EG +G ITPY++ ++PV LWGRD+L + + Sbjct 901 TNPQQSAQMLKWEDSEGNNGHITPYVLPNLPVNLWGRDILSQMKL 945 Range 2: 958 to 993 Score:47.8 bits(112), Expect:5e-40, Method:Compositional matrix adjust., Identities:19/36(53%), Positives:26/36(72%), Gaps:0/36(0%) Query 24416 MIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLGF 24309 M+ GY+P +GLGKN QG P+ + K+D+TGLGF Sbjct 958 MLSQGYLPGQGLGKNNQGITQPITITPKKDKTGLGF 993 Range 3: 379 to 673 Score:144 bits(364), Expect:4e-32, Method:Compositional matrix adjust., Identities:103/305(34%), Positives:153/305(50%), Gaps:36/305(11%) Query 26105 VDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLSPGKYLDWKSFL 25926 ++ KTI+++ +V YG A F +A +E+L LTP DW L+RA LS G + WKS Sbjct 379 LNLKTIEKIKTAVANYGPTAPFTVALVESLSERWLTPSDWFFLSRAALSGGDNILWKSE- 437 Query 25925 YENANTQAAINLASGADPQRHWDADMLL-GIGRFALD--QTGYPDLVYSQINEIAIKAWK 25755 YE+ + Q A P+ D + + G + + Q +P + +QI +KAWK Sbjct 438 YEDISKQFAERTRVRPPPK---DGPLKIPGASPYQNNDKQAQFPPGLLTQIQSAGLKAWK 494 Query 25754 ALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDC 25575 LP +GA + +L K+ QGP E +SDFV+ + E+A ++FG ++ +K L YE C Sbjct 495 RLPQKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPAC 554 Query 25574 STAITPYKHKGLE-----VWM----KVCREIGGPLTNVGLAAAMIQLKRKS-----TMET 25437 +AI P++ K L +W V IG L N LA A + R + T Sbjct 555 QSAIRPFRQKELSTMSPLLWYCSAHAVGLAIGAALQN--LAPAQLLEPRPAFAIIVTNPA 612 Query 25436 CFRCGRKGHYRSQCPDRSGEQSNSRPPQPRL---------CPRCKKGNHWANECRSIKDL 25284 F+ + Q P + Q N+ PQ L CPRCKKG HWA+ECRS D+ Sbjct 613 IFQ--ETAPKKIQPPTQLPTQPNA--PQASLIKNLGPTTKCPRCKKGFHWASECRSRLDI 668 Query 25283 DGRTL 25269 +G+ + Sbjct 669 NGQPI 673 >RecName: Full=Envelope glycoprotein; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; Short=SU; Contains: RecName: Full=Transmembrane protein; Short=TM; Flags: Precursor [Mouse Intracisternal A-particle] Sequence ID: P31789.1 Length: 584 Range 1: 191 to 584 Score:165 bits(418), Expect:6e-40, Method:Compositional matrix adjust., Identities:143/407(35%), Positives:205/407(50%), Gaps:39/407(9%) Query 21184 FEFSPPLGNVQYDQEKNKTGKLNFW-------PWYQWALSNEQGAYTSL----------I 21056 F FSP N+ D EK K + P+++W L G+ T L + Sbjct 191 FSFSP---NMIDDPEKEFVMKKGLFIQDFRMHPFHKWVLCGVNGSCTELNPLIFIQGGAV 247 Query 21055 SFARLLG-EEFTLYNISATRTNNKTSLVNVKVNGLLANDTAV------GASVCVRPPFYF 20897 A G F Y + + N V N T V VCV PPF F Sbjct 248 GKASFTGISRFAQYWGIHDASQDSYGYTNTSVEITGFNKTLVNQINYPSTPVCVYPPFLF 307 Query 20896 FISTNLSDNALNCNNSDVVYYLAECWDGTNDTAVMV-KIPSFLPIPVEANPDNFPILHLL 20720 +S +D+ C+N ++++CWD T +T MV +IP ++P+PVE P L + Sbjct 308 ILS---NDSFEVCSNDSC--WISQCWDVTKNTRAMVARIPRWIPVPVET-PST---LSMF 358 Query 20719 RTKKDFGitaaiisaivlsataattatiAMTNQVQMAETINQIVERTAVALEIQEEFNAH 20540 R K+DFGITAA+I AI SA AAT A AM + V +NQ+ A A+ +Q + Sbjct 359 RQKRDFGITAAMIIAISASAAAATAAGYAMVSAVS-GTKLNQLSADLADAITVQTSASTK 417 Query 20539 LASGFLLANQRIDLIQEQIEALYHMTQLTCVSSLRGLCITPLQAKLSQYSQQ-SKEISNY 20363 L G ++ NQ +DL +EQI L+ M QL C L LCIT +Q + Y+ S+++S Y Sbjct 418 LKGGLMILNQCLDLAEEQIGVLHQMAQLGCERKLEALCITSVQYENFTYAANLSRQLSLY 477 Query 20362 LKENWSMKAEQLSRQLLVQIAVLNNTRMEPITFGDFTLWIINAFSFFKERAGMFAWggiv 20183 L NWS + ++ L+ + +N+TRM+ + WI +AFS+FKE G+ +G Sbjct 478 LAGNWSERFDETLEALIAAVLKINSTRMDLSLTEGLSSWISSAFSYFKEWVGVGLFGVAT 537 Query 20182 llgcgvcLWIFCHLQREHARHKVIVYQAMVAIESGASPNIWLASLKN 20042 G V LW+ C L+ + R KV++ QA+ AIE GASP IWL+ LKN Sbjct 538 CCGLVVMLWLVCKLRTQQTRDKVVITQALAAIEQGASPEIWLSMLKN 584 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P10271.2 Length: 860 Range 1: 625 to 852 Score:165 bits(417), Expect:1e-38, Method:Compositional matrix adjust., Identities:101/230(44%), Positives:141/230(61%), Gaps:3/230(1%) Query 25126 RATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPG 24947 R T GSAGLDL S L+L+ + GV + T +G LP+ T GL++GRSS+ KGL+++PG Sbjct 625 RGTPGSAGLDLSSQKDLILSLEDGVSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPG 684 Query 24946 VIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSR 24767 VID D+ G +KV+V + + I G+RIAQLLLLP L P RG G GST S Sbjct 685 VIDSDFQGEIKVMVKAAKNAVIIHKGERIAQLLLLPYLKLPNPVIKEERGSEGFGST-SH 743 Query 24766 FAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYE 24587 ++ + PML + + G FLGLLDTGAD++ I+ DWP WP + +L GLG Sbjct 744 VHWVQEISDSRPMLHIYLNGRRFLGLLDTGADKTCIAGRDWPANWPIHQTESSLQGLGMA 803 Query 24586 MAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDMRLTNE 24440 SS+ L W+ E +SG I P++I +P TLWGRD++ ++ +RL + Sbjct 804 CGVARSSQPLRWQH-EDKSGIIHPFVIPTLPFTLWGRDIMKDIKVRLMTD 852 Range 2: 265 to 578 Score:145 bits(367), Expect:1e-32, Method:Compositional matrix adjust., Identities:101/322(31%), Positives:153/322(47%), Gaps:32/322(9%) Query 26162 LGLSFPVFL----DVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTP 25995 L +FPV D + EP+ KT+K+L +V+T G +A + + ++ + LTP Sbjct 265 LTFTFPVVFMGESDEDDTPVWEPLPLKTLKELQSAVRTMGPSAPYTLQVVDMVASQWLTP 324 Query 25994 GDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF--AL 25821 DW ARA LSPG Y+ W++ E ++ + A+G + DMLLG G+F Sbjct 325 SDWHQTARATLSPGDYVLWRTEYEE--KSKEMVQKAAGKRKGKV-SLDMLLGTGQFLSPS 381 Query 25820 DQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIF 25641 Q V + A+ AW+A+P G L + QG E + F++ + E+ ++ Sbjct 382 SQIKLSKDVLKDVTTNAVLAWRAIPPPGVKKTVLAGLKQGNEESYETFISRLEEAVYRMM 441 Query 25640 GDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAMI 25467 + LIKQL +E C I P + G ++ +++ C + P G+A AA + Sbjct 442 PRGEGSDILIKQLAWENANSLCQDLIRPIRKTGTIQDYIRACLD-ASPAVVQGMAYAAAM 500 Query 25466 QLKRKSTM----------------ETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPR 25335 + ++ ST CF CG+ GH R C D G + R P P LCPR Sbjct 501 RGQKYSTFVKQTYGGGKGGQGAEGPVCFSCGKTGHIRKDCKDEKG---SKRAP-PGLCPR 556 Query 25334 CKKGNHWANECRSIKDLDGRTL 25269 CKKG HW +EC+S D DG L Sbjct 557 CKKGYHWKSECKSKFDKDGNPL 578 >RecName: Full=Gag-Pro polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: Q9IZT2.1 Length: 860 Range 1: 625 to 852 Score:164 bits(416), Expect:1e-38, Method:Compositional matrix adjust., Identities:101/230(44%), Positives:141/230(61%), Gaps:3/230(1%) Query 25126 RATKGSAGLDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPG 24947 R T GSAGLDL S L+L+ + GV + T +G LP+ T GL++GRSS+ KGL+++PG Sbjct 625 RGTPGSAGLDLSSQKDLILSLEDGVSLVPTLVKGTLPEGTTGLIIGRSSNYKKGLEVLPG 684 Query 24946 VIDPDYLGTVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSR 24767 VID D+ G +KV+V + + I G+RIAQLLLLP L P RG G GST S Sbjct 685 VIDSDFQGEIKVMVKAAKNAVIIHKGERIAQLLLLPYLKLPNPIIKEERGSEGFGST-SH 743 Query 24766 FAFISLEPGNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYE 24587 ++ + PML +++ G FLGLLDTGAD++ I+ DWP WP + +L GLG Sbjct 744 VHWVQEISDSRPMLHISLNGRRFLGLLDTGADKTCIAGRDWPANWPIHQTESSLQGLGMA 803 Query 24586 MAPLLSSKELTWKDAEGRSGKITPYII-DIPVTLWGRDVLINLDMRLTNE 24440 SS+ L W+ E +SG I P++I +P TLWGRD++ + +RL + Sbjct 804 CGVARSSQPLRWQ-HEDKSGIIHPFVIPTLPFTLWGRDIMKEIKVRLMTD 852 Range 2: 265 to 578 Score:142 bits(359), Expect:1e-31, Method:Compositional matrix adjust., Identities:99/322(31%), Positives:152/322(47%), Gaps:32/322(9%) Query 26162 LGLSFPVFL----DVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTP 25995 L +FPV D + EP+ KT+K+L +V+T G +A + + ++ + LTP Sbjct 265 LTFTFPVVFMGESDDDDTPVWEPLPLKTLKELQSAVRTMGPSAPYTLQVVDMVASQWLTP 324 Query 25994 GDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF--AL 25821 DW ARA LSPG Y+ W++ YE + + A + DMLLG G+F Sbjct 325 SDWHQTARATLSPGDYVLWRTE-YEEKSKETVQKTAGKR--KGKVSLDMLLGTGQFLSPS 381 Query 25820 DQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIF 25641 Q V + A+ AW+A+P G L + QG E + F++ + E+ ++ Sbjct 382 SQIKLSKDVLKDVTTNAVLAWRAIPPPGVKKTVLAGLKQGNEESYETFISRLEEAVYRMM 441 Query 25640 GDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAMI 25467 + LIKQL +E C I P + G ++ +++ C + P G+A AA + Sbjct 442 PRGEGSDILIKQLAWENANSLCQDLIRPMRKTGTMQDYIRACLD-ASPAVVQGMAYAAAM 500 Query 25466 QLKRKSTM----------------ETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPR 25335 + ++ ST CF CG+ GH + C + E+ + R P P LCPR Sbjct 501 RGQKYSTFVKQTYGGGKGGQGSEGPVCFSCGKTGHIKRDCKE---EKGSKRAP-PGLCPR 556 Query 25334 CKKGNHWANECRSIKDLDGRTL 25269 CKKG HW +EC+S D DG L Sbjct 557 CKKGYHWKSECKSKFDKDGNPL 578 >RecName: Full=Cytochrome P450 2C16; AltName: Full=CYPIIC16 [Oryctolagus cuniculus] Sequence ID: P15123.1 Length: 487 Range 1: 56 to 161 Score:150 bits(378), Expect:2e-35, Method:Compositional matrix adjust., Identities:82/164(50%), Positives:96/164(58%), Gaps:58/164(35%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAF 57830 +FS+ YGPVFT+Y GMKP V+LHGY+AVKEAL+D GEEFA RGSFP+++K+ Sbjct 56 KFSERYGPVFTVYLGMKPAVVLHGYQAVKEALVDLGEEFAGRGSFPMLDKV--------- 106 Query 57831 L*VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHG 58010 SKG LGIVF++G Sbjct 107 ---------------SKG----------------------------------LGIVFTNG 117 Query 58011 NRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 RWKEIRRF+L TLRN GMGKR+IED VQEEARCLVEELRKTN Sbjct 118 KRWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTNA 161 Range 2: 159 to 215 Score:105 bits(263), Expect:8e-21, Method:Compositional matrix adjust., Identities:45/57(79%), Positives:52/57(91%), Gaps:0/57(0%) Query 58972 SSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 ++ SPCDPTFILGCAPCNVICSIIF NRFDYKD++FL L+EK NEN++ILSSPW QV Sbjct 159 TNASPCDPTFILGCAPCNVICSIIFHNRFDYKDEEFLKLLEKFNENVRILSSPWLQV 215 Range 3: 156 to 213 Score:99.4 bits(246), Expect:1e-18, Method:Compositional matrix adjust., Identities:41/58(71%), Positives:51/58(87%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++ SPCDPTFILGCAPCNVICSIIF N FDYKD++FL L+EK NEN++I+SSPW+ Sbjct 156 LRKTNASPCDPTFILGCAPCNVICSIIFHNRFDYKDEEFLKLLEKFNENVRILSSPWL 213 Range 4: 208 to 303 Score:85.9 bits(211), Expect:2e-14, Method:Compositional matrix adjust., Identities:44/99(44%), Positives:62/99(62%), Gaps:10/99(10%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ FP LIDY PGSH TL KN Y +N++++K+KEHQ+ LDV NPRDFI Sbjct 208 LSSPW---LQVCNNFPALIDYLPGSHKTLLKNSDYVKNFIMEKVKEHQKFLDVNNPRDFI 264 Query 60358 DYYLIKWKQVKH-------LYIFIYFIFQVNSQSLKTYL 60453 D +LIK +Q H L ++ +F +++ T L Sbjct 265 DCFLIKMEQENHLEFTLESLVTTVFDLFGAGTETTSTTL 303 Range 5: 56 to 152 Score:85.1 bits(209), Expect:3e-14, Method:Compositional matrix adjust., Identities:55/155(35%), Positives:72/155(46%), Gaps:58/155(37%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLGKCTC 38298 +FS+ G VFT+Y GMK V+LHGY A KE L+D GEEF RGSFP+ +K++KGLG Sbjct 56 KFSERYGPVFTVYLGMKPAVVLHGYQAVKEALVDLGEEFAGRGSFPMLDKVSKGLG---- 111 Query 38299 L*VIWVAFTVRKKIDSKGQT*SWGSDYASLGLCLRQCSPSSWDHIVVSIPICSGIAFSHG 38478 + FT K+ W Sbjct 112 -----IVFTNGKR---------W------------------------------------- 120 Query 38479 NRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 KEIRRF+LMTL+N GMGKR++ + + L Sbjct 121 ---KEIRRFSLMTLRNFGMGKRSIEDRVQEEARCL 152 Range 6: 223 to 298 Score:65.9 bits(159), Expect:3e-08, Method:Compositional matrix adjust., Identities:34/76(45%), Positives:47/76(61%), Gaps:4/76(5%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH*YI--- 40907 IDY GS+ TL KN + +N+I++K+KEHQ+ LDV NP DFID +LIK +Q H Sbjct 223 IDYLPGSHKTLLKNSDYVKNFIMEKVKEHQKFLDVNNPRDFIDCFLIKMEQENHLEFTLE 282 Query 40908 -LIYFIFQVFSHSLNT 40952 L+ +F +F T Sbjct 283 SLVTTVFDLFGAGTET 298 Range 7: 120 to 169 Score:53.5 bits(127), Expect:2e-04, Method:Compositional matrix adjust., Identities:29/53(55%), Positives:35/53(66%), Gaps:6/53(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFL 38624 WK + R + L FG G++SIEDRVQEE +CLVEELRKTN D TF+ Sbjct 120 WKEIRRFSLM---TLRNFGMGKRSIEDRVQEEARCLVEELRKTNASPCDPTFI 169 Range 8: 425 to 464 Score:47.8 bits(112), Expect:0.013, Method:Compositional matrix adjust., Identities:24/40(60%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK ICV E LA+M LFLF +IL+NF L+S V PK+L Sbjct 425 FSAGKRICVGEALARMELFLFLTSILQNFKLQSLVEPKDL 464 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (CLONE 1369)] Sequence ID: P11204.1 Length: 1146 Range 1: 299 to 582 Score:109 bits(273), Expect:6e-35, Method:Compositional matrix adjust., Identities:81/289(28%), Positives:147/289(50%), Gaps:10/289(3%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A+++IPL P+ AFT+PS+N++EPDK Y W L QG SP + Q +Q+ LQP R+ Sbjct 299 AYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRE 358 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAP-EKVQMGKKGEYLGTK 23622 ++P++++ +MDD+ + + ++ + + F P +K+Q +LG + Sbjct 359 RYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILLEEGFETPDDKLQEVPPYSWLGYQ 418 Query 23621 ITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTS 23442 + P + QK++L TL+D QKL+G+I W+ + P + ++ + KG +L Sbjct 419 LCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGV--PGLTVKHIAATTKGCLELNQ 476 Query 23441 PRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLC---ILRTFCQSTGVLWQQGPLLWI 23271 T++A+ L + + ++ A +Y E+ +LC I + + ++T V+ Q +LW Sbjct 477 KVIWTEEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNY-EATYVIKQSQGILWA 535 Query 23270 YPHI-SPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQV 23127 I NK + + L + +S I G P +P+T QV Sbjct 536 GKKIMKANKGWSTVKNLMLLLQHVATES-ITRVGKCP-TFKVPFTKEQV 582 Range 2: 207 to 280 Score:67.4 bits(163), Expect:6e-35, Method:Compositional matrix adjust., Identities:36/74(49%), Positives:48/74(64%), Gaps:2/74(2%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPST--SPWNTLIFVIKKKSEKWQL*HDLRAIN 24076 IPQ PL+ EKL A E+V L G I ++ +P+N+ IFVIKK+S KW+L DLR +N Sbjct 207 IPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLRELN 266 Query 24075 SQMQIMGRIQRGLP 24034 +Q+ I RGLP Sbjct 267 KTVQVGTEISRGLP 280 Range 3: 929 to 1059 Score:85.1 bits(209), Expect:9e-14, Method:Compositional matrix adjust., Identities:55/139(40%), Positives:75/139(53%), Gaps:8/139(5%) Query 22410 VVRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWG 22231 V+R WQ D TH+ K V++ SG IHATL++ E A LE WA Sbjct 929 VMRSPNHWQADCTHLDN----KIILTFVESNSGYIHATLLSKENALCTSLAILE-WARLF 983 Query 22230 KSDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGG 22051 SL TDNG + A+ + +++ HTTG+PY+P+ QGIVE+A+RTLKE +Q + Sbjct 984 SPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHRDN 1043 Query 22050 IAYGRTPREQLSLALFTRN 21994 +T L LAL T N Sbjct 1044 T---QTLEAALQLALITCN 1059 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (clone CL22)] Sequence ID: P32542.1 Length: 1146 Range 1: 299 to 582 Score:109 bits(272), Expect:8e-35, Method:Compositional matrix adjust., Identities:81/289(28%), Positives:147/289(50%), Gaps:10/289(3%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A+++IPL P+ AFT+PS+N++EPDK Y W L QG SP + Q +Q+ LQP R+ Sbjct 299 AYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRE 358 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAP-EKVQMGKKGEYLGTK 23622 ++P++++ +MDD+ + + ++ + + F P +K+Q +LG + Sbjct 359 RYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILLEKGFETPDDKLQEVPPYSWLGYQ 418 Query 23621 ITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTS 23442 + P + QK++L TL+D QKL+G+I W+ + P + ++ + KG +L Sbjct 419 LCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGV--PGLTVKHIAATTKGCLELNQ 476 Query 23441 PRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLC---ILRTFCQSTGVLWQQGPLLWI 23271 T++A+ L + + ++ A +Y E+ +LC I + + ++T V+ Q +LW Sbjct 477 KVIWTEEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNY-EATYVIKQSQGILWA 535 Query 23270 YPHI-SPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQV 23127 I NK + + L + +S I G P +P+T QV Sbjct 536 GKKIMKANKGWSTVKNLMLLLQHVATES-ITRVGKCP-TFKVPFTKEQV 582 Range 2: 207 to 280 Score:67.4 bits(163), Expect:8e-35, Method:Compositional matrix adjust., Identities:36/74(49%), Positives:48/74(64%), Gaps:2/74(2%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPST--SPWNTLIFVIKKKSEKWQL*HDLRAIN 24076 IPQ PL+ EKL A E+V L G I ++ +P+N+ IFVIKK+S KW+L DLR +N Sbjct 207 IPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLRELN 266 Query 24075 SQMQIMGRIQRGLP 24034 +Q+ I RGLP Sbjct 267 KTVQVGTEISRGLP 280 Range 3: 929 to 1059 Score:85.1 bits(209), Expect:9e-14, Method:Compositional matrix adjust., Identities:55/139(40%), Positives:75/139(53%), Gaps:8/139(5%) Query 22410 VVRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWG 22231 V+R WQ D TH+ K V++ SG IHATL++ E A LE WA Sbjct 929 VMRSPNHWQADCTHLDN----KIILTFVESNSGYIHATLLSKENALCTSLAILE-WARLF 983 Query 22230 KSDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGG 22051 SL TDNG + A+ + +++ HTTG+PY+P+ QGIVE+A+RTLKE +Q + Sbjct 984 SPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHRDN 1043 Query 22050 IAYGRTPREQLSLALFTRN 21994 +T L LAL T N Sbjct 1044 T---QTLEAALQLALITCN 1059 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell leukemia virus 3 (strain Pyl43)] Sequence ID: Q4U0X6.4 Length: 1440 Range 1: 663 to 935 Score:115 bits(287), Expect:1e-34, Method:Compositional matrix adjust., Identities:84/275(31%), Positives:127/275(46%), Gaps:8/275(2%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 AF+ IPL FAFTLP NN P Y W VL QG NSPT+ + + L P+R Sbjct 663 AFFQIPLPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSPTLFEQQLSHILAPVRK 722 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKG-EYLGTK 23622 FP II +MDDILL++ L KV L L ++ EK Q +LG Sbjct 723 AFPNSLIIQYMDDILLASPALRELTALTDKVTNALTKEGLPMSLEKTQATPGSIHFLGQV 782 Query 23621 ITPHSISPQKI-ELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 I+P I+ + + + + +L + Q +LG + W+ + L LY L+G Sbjct 783 ISPDCITYETLPSIHVKSIWSLAELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPR 842 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLW---QQGPLLW 23274 LT +L+ ++K L R + +L I+ +T VL+ Q+ PL+W Sbjct 843 DTIELTSTQVQALKTIQKALALNCRSRLVSQLPILALIILRPTGTTAVLFQTKQKWPLVW 902 Query 23273 IY-PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFG 23172 ++ PH P +L + +A + K +QH+G Sbjct 903 LHTPH--PATSLRPWGQLLANAIITLDKYSLQHYG 935 Range 2: 572 to 647 Score:61.2 bits(147), Expect:1e-34, Method:Compositional matrix adjust., Identities:32/76(42%), Positives:44/76(57%), Gaps:0/76(0%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQL*HDLRAINSQ 24070 + Q PL+ E+L A +LVS L+ HI+P P N IF +KK + KW+ HDLRA NS Sbjct 572 VSQFPLNPERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSL 631 Query 24069 MQIMGRIQRGLPPLSS 24022 + + G P L+S Sbjct 632 TRDLASPSPGPPDLTS 647 Range 3: 1204 to 1313 Score:83.2 bits(204), Expect:3e-13, Method:Compositional matrix adjust., Identities:42/111(38%), Positives:63/111(56%), Gaps:2/111(1%) Query 22392 LWQMDVTHISQFGNLKYAH-VSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSL 22216 +WQ DVTH+ + KY V VDT SG++ + E + + L + GK S+ Sbjct 1204 IWQGDVTHL-HYKRYKYCLLVWVDTYSGVVSVSCRRKETGSDCVVSLLAAISILGKPHSI 1262 Query 22215 KTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK 22063 TDNG AY ++ F FC ++ +KH+T +PYNP G+VE+ + LK L+ K Sbjct 1263 NTDNGTAYLSQEFQQFCSSLSIKHSTHVPYNPTSSGLVERTNGILKTLISK 1313 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-3 strain 2026ND] Sequence ID: Q0R5R2.3 Length: 1440 Range 1: 663 to 935 Score:114 bits(285), Expect:1e-34, Method:Compositional matrix adjust., Identities:85/275(31%), Positives:127/275(46%), Gaps:8/275(2%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 AF+ IPL FAFTLP NN P Y W VL QG NSPT+ + + L P+R Sbjct 663 AFFQIPLPTIFQPYFAFTLPQPNNYGPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRK 722 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKG-EYLGTK 23622 FP II +MDDILL++ L KV L L ++PEK Q +LG Sbjct 723 TFPNSLIIQYMDDILLASPAPGELAALTDKVTNALTKEGLPLSPEKTQATPGPIHFLGQV 782 Query 23621 ITPHSISPQKI-ELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLT 23445 I+ I+ + + + +L + Q +LG + W+ + L LY L+G Sbjct 783 ISQDCITYETLPSINVKSTWSLAELQSMLGELQWVSKGTPVLRSSLHQLYLALRGHRDPR 842 Query 23444 SPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLW---QQGPLLW 23274 LT +LR ++K L R + +L I+ +T VL+ Q+ PL+W Sbjct 843 DTIKLTSIQVQALRTIQKALTLNCRSRLVNQLPILALIMLRPTGTTAVLFQTKQKWPLVW 902 Query 23273 IY-PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFG 23172 ++ PH P +L + +A ++ K +QH+G Sbjct 903 LHTPH--PATSLRPWGQLLANAVIILDKYSLQHYG 935 Range 2: 572 to 647 Score:61.2 bits(147), Expect:1e-34, Method:Compositional matrix adjust., Identities:32/76(42%), Positives:44/76(57%), Gaps:0/76(0%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQL*HDLRAINSQ 24070 + Q PL+ E+L A +LVS L+ HI+P P N IF +KK + KW+ HDLRA NS Sbjct 572 VSQFPLNPERLQALTDLVSRALEAKHIEPYQGPGNNPIFPVKKPNGKWRFIHDLRATNSV 631 Query 24069 MQIMGRIQRGLPPLSS 24022 + + G P L+S Sbjct 632 TRDLASPSPGPPDLTS 647 Range 3: 1204 to 1313 Score:82.4 bits(202), Expect:6e-13, Method:Compositional matrix adjust., Identities:42/111(38%), Positives:64/111(57%), Gaps:2/111(1%) Query 22392 LWQMDVTHISQFGNLKYAH-VSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSL 22216 +WQ DVTH+ Q+ KY V VDT SG + + E + ++ L + GK ++ Sbjct 1204 IWQGDVTHL-QYKRYKYCLLVWVDTYSGAVSVSCRRKETGSDCVASLLVAISILGKPQNI 1262 Query 22215 KTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK 22063 TDNG AY ++ F FC ++ +KH+T +PYNP G+VE+ + LK L+ K Sbjct 1263 NTDNGAAYLSQEFQQFCNSLAIKHSTHIPYNPTSSGLVERTNGILKTLISK 1313 >RecName: Full=Endogenous retrovirus group K member 6 Gag polyprotein; AltName: Full=HERV-K(C7) Gag protein; AltName: Full=HERV-K(HML-2.HOM) Gag protein; AltName: Full=HERV-K108 Gag protein; AltName: Full=HERV-K_7p22.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q7LDI9.3 Length: 666 Range 1: 278 to 616 Score:150 bits(378), Expect:2e-34, Method:Compositional matrix adjust., Identities:106/347(31%), Positives:167/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKKLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGRKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.4 bits(111), Expect:0.023, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (ISOLATE WYOMING)] Sequence ID: P03371.1 Length: 1145 Range 1: 299 to 581 Score:108 bits(271), Expect:2e-34, Method:Compositional matrix adjust., Identities:79/288(27%), Positives:144/288(50%), Gaps:9/288(3%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A+++IPL P+ AFT+PS+N++EPDK Y W L QG SP + Q +Q+ LQP R+ Sbjct 299 AYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWKCLPQGFVLSPYIYQKTLQEILQPFRE 358 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKGEYLGTKI 23619 ++P++++ +MDD+ + + ++ + +K+Q +LG ++ Sbjct 359 RYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILQKGFETPDDKLQEVPPYSWLGYQL 418 Query 23618 TPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTSP 23439 P + QK++L TL+D QKL+G+I W+ + P + ++ + KG +L Sbjct 419 CPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGV--PGLTVKHIAATTKGCLELNQK 476 Query 23438 RALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLC---ILRTFCQSTGVLWQQGPLLWIY 23268 T++A+ L + + ++ A +Y E+ +LC I + + ++T V+ Q +LW Sbjct 477 VIWTEEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNY-EATYVIKQSQGILWAG 535 Query 23267 PHI-SPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKIIIPYTATQV 23127 I NK + + L + +S I G P +P+T QV Sbjct 536 KKIMKANKGWSTVKNLMLLLQHVATES-ITRVGKCP-TFKVPFTKEQV 581 Range 2: 207 to 280 Score:66.2 bits(160), Expect:2e-34, Method:Compositional matrix adjust., Identities:36/74(49%), Positives:47/74(63%), Gaps:2/74(2%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPST--SPWNTLIFVIKKKSEKWQL*HDLRAIN 24076 IPQ PL+ EKL A E V L G I ++ +P+N+ IFVIKK+S KW+L DLR +N Sbjct 207 IPQWPLTKEKLEGAKETVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLRELN 266 Query 24075 SQMQIMGRIQRGLP 24034 +Q+ I RGLP Sbjct 267 KTVQVGTEISRGLP 280 Range 3: 928 to 1058 Score:84.7 bits(208), Expect:1e-13, Method:Compositional matrix adjust., Identities:55/139(40%), Positives:76/139(54%), Gaps:8/139(5%) Query 22410 VVRLLRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWG 22231 V+R WQ D TH+ L + V++ SG IHATL++ E A LE WA Sbjct 928 VMRSPNHWQADCTHLDNKIILHF----VESNSGYIHATLLSKENALCTSLAILE-WARLF 982 Query 22230 KSDSLKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGG 22051 SL TDNG + A+ + +++ HTTG+PY+P+ QGIVE+A+RTLKE +Q + Sbjct 983 SPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHRDN 1042 Query 22050 IAYGRTPREQLSLALFTRN 21994 +T L LAL T N Sbjct 1043 T---QTLEAALQLALITCN 1058 >RecName: Full=Endogenous retrovirus group K member 8 Gag polyprotein; AltName: Full=HERV-K115 Gag protein; AltName: Full=HERV-K_8p23.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62685.2 Length: 647 Range 1: 278 to 616 Score:149 bits(377), Expect:2e-34, Method:Compositional matrix adjust., Identities:106/347(31%), Positives:167/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.0 bits(110), Expect:0.029, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Endogenous retrovirus group K member 7 Gag polyprotein; AltName: Full=HERV-K(III) Gag protein; AltName: Full=HERV-K102 Gag protein; AltName: Full=HERV-K_1q22 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63130.2 Length: 666 Range 1: 278 to 616 Score:149 bits(377), Expect:3e-34, Method:Compositional matrix adjust., Identities:106/347(31%), Positives:167/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 >RecName: Full=Endogenous retrovirus group K member 9 Gag polyprotein; AltName: Full=HERV-K(C6) Gag protein; AltName: Full=HERV-K109 Gag protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63126.2 Length: 666 Range 1: 278 to 616 Score:149 bits(376), Expect:3e-34, Method:Compositional matrix adjust., Identities:106/347(31%), Positives:167/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKILKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.4 bits(111), Expect:0.023, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Endogenous retrovirus group K member 113 Gag polyprotein; AltName: Full=HERV-K113 Gag protein; AltName: Full=HERV-K_19p13.11 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62684.2 Length: 666 Range 1: 278 to 616 Score:149 bits(376), Expect:3e-34, Method:Compositional matrix adjust., Identities:105/347(30%), Positives:168/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L++ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLELMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C +GG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGMGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.0 bits(110), Expect:0.026, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Endogenous retrovirus group K member 10 Gag polyprotein; AltName: Full=HERV-K10 Gag protein; AltName: Full=HERV-K107 Gag protein; AltName: Full=HERV-K_5q33.3 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P87889.4 Length: 666 Range 1: 278 to 616 Score:149 bits(376), Expect:4e-34, Method:Compositional matrix adjust., Identities:106/347(31%), Positives:167/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAYGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKAGKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 >RecName: Full=Endogenous retrovirus group K member 24 Gag polyprotein; AltName: Full=HERV-K101 Gag protein; AltName: Full=HERV-K_22q11.21 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P63145.2 Length: 666 Range 1: 278 to 616 Score:148 bits(374), Expect:6e-34, Method:Compositional matrix adjust., Identities:106/347(31%), Positives:167/347(48%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAYGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSACPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.4 bits(111), Expect:0.023, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14 [Mouse mammary tumor virus (STRAIN BR6)] Sequence ID: P10258.3 Length: 591 Range 1: 265 to 578 Score:146 bits(369), Expect:1e-33, Method:Compositional matrix adjust., Identities:101/322(31%), Positives:153/322(47%), Gaps:32/322(9%) Query 26162 LGLSFPVFL----DVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTP 25995 L +FPV D + EP+ KT+K+L +V+T G +A + + ++ + LTP Sbjct 265 LTFTFPVVFMGESDEDDTPVWEPLPLKTLKELQSAVRTMGPSAPYTLQVVDMVASQWLTP 324 Query 25994 GDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF--AL 25821 DW ARA LSPG Y+ W++ E ++ + A+G + DMLLG G+F Sbjct 325 SDWHQTARATLSPGDYVLWRTEYEE--KSKEMVQKAAGKRKGKV-SLDMLLGTGQFLSPS 381 Query 25820 DQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIF 25641 Q V + A+ AW+A+P G L + QG E + F++ + E+ ++ Sbjct 382 SQIKLSKDVLKDVTTNAVLAWRAIPPPGVKKTVLAGLKQGNEESYETFISRLEEAVYRMM 441 Query 25640 GDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAMI 25467 + LIKQL +E C I P + G ++ +++ C + P G+A AA + Sbjct 442 PRGEGSDILIKQLAWENANSLCQDLIRPIRKTGTIQDYIRACLD-ASPAVVQGMAYAAAM 500 Query 25466 QLKRKSTM----------------ETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPR 25335 + ++ ST CF CG+ GH R C D G + R P P LCPR Sbjct 501 RGQKYSTFVKQTYGGGKGGQGAEGPVCFSCGKTGHIRKDCKDEKG---SKRAP-PGLCPR 556 Query 25334 CKKGNHWANECRSIKDLDGRTL 25269 CKKG HW +EC+S D DG L Sbjct 557 CKKGYHWKSECKSKFDKDGNPL 578 >RecName: Full=Cytochrome P450 2C5; AltName: Full=CYPIIC5; AltName: Full=Cytochrome P450 1; AltName: Full=Cytochrome P450IIC5; AltName: Full=Progesterone 21-hydroxylase [Oryctolagus cuniculus] Sequence ID: P00179.2 Length: 487 Range 1: 56 to 161 Score:142 bits(359), Expect:4e-33, Method:Compositional matrix adjust., Identities:78/164(48%), Positives:93/164(56%), Gaps:58/164(35%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAF 57830 +FS+ YGPVFT+Y GMKPTV+LHGYEAVKEAL+D GEEFA RGS P++EK++K LG Sbjct 56 KFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGEEFAGRGSVPILEKVSKGLG---- 111 Query 57831 L*VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHG 58010 +AF+ K Sbjct 112 -----IAFSNAKT----------------------------------------------- 119 Query 58011 NRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 WKE+RRF+L TLRN GMGKR+IED +QEEARCLVEELRKTN Sbjct 120 --WKEMRRFSLMTLRNFGMGKRSIEDRIQEEARCLVEELRKTNA 161 Range 2: 156 to 215 Score:105 bits(263), Expect:6e-21, Method:Compositional matrix adjust., Identities:45/60(75%), Positives:53/60(88%), Gaps:0/60(0%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + ++ SPCDPTFILGCAPCNVICS+IF NRFDYKD++FL LME LNEN++ILSSPW QV Sbjct 156 LRKTNASPCDPTFILGCAPCNVICSVIFHNRFDYKDEEFLKLMESLNENVRILSSPWLQV 215 Range 3: 156 to 213 Score:99.8 bits(247), Expect:7e-19, Method:Compositional matrix adjust., Identities:41/58(71%), Positives:51/58(87%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++ SPCDPTFILGCAPCNVICS+IF N FDYKD++FL LME LNEN++I+SSPW+ Sbjct 156 LRKTNASPCDPTFILGCAPCNVICSVIFHNRFDYKDEEFLKLMESLNENVRILSSPWL 213 Range 4: 56 to 152 Score:86.3 bits(212), Expect:1e-14, Method:Compositional matrix adjust., Identities:54/155(35%), Positives:72/155(46%), Gaps:58/155(37%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLGKCTC 38298 +FS+ G VFT+Y GMK V+LHGY A KE L+D GEEF RGS P+ EK++KGLG Sbjct 56 KFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGEEFAGRGSVPILEKVSKGLG---- 111 Query 38299 L*VIWVAFTVRKKIDSKGQT*SWGSDYASLGLCLRQCSPSSWDHIVVSIPICSGIAFSHG 38478 +AF+ K +W Sbjct 112 -----IAFSNAK---------TW------------------------------------- 120 Query 38479 NRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 KE+RRF+LMTL+N GMGKR++ + + L Sbjct 121 ---KEMRRFSLMTLRNFGMGKRSIEDRIQEEARCL 152 Range 5: 219 to 303 Score:75.9 bits(185), Expect:3e-11, Method:Compositional matrix adjust., Identities:38/85(45%), Positives:55/85(64%), Gaps:7/85(8%) Query 60220 FPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFIDYYLIKWKQ----- 60384 FP L+DY PG H TL KN Y +N++++K+KEHQ+ LDV NPRDFID +LIK +Q Sbjct 219 FPALLDYFPGIHKTLLKNADYIKNFIMEKVKEHQKLLDVNNPRDFIDCFLIKMEQENNLE 278 Query 60385 --VKHLYIFIYFIFQVNSQSLKTYL 60453 ++ L I + +F +++ T L Sbjct 279 FTLESLVIAVSDLFGAGTETTSTTL 303 Range 6: 223 to 273 Score:60.1 bits(144), Expect:2e-06, Method:Compositional matrix adjust., Identities:27/51(53%), Positives:38/51(74%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 +DY G + TL KN + +N+I++K+KEHQ+ LDV NP DFID +LIK +Q Sbjct 223 LDYFPGIHKTLLKNADYIKNFIMEKVKEHQKLLDVNNPRDFIDCFLIKMEQ 273 Range 7: 120 to 170 Score:54.7 bits(130), Expect:9e-05, Method:Compositional matrix adjust., Identities:29/54(54%), Positives:35/54(64%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK M R + L FG G++SIEDR+QEE +CLVEELRKTN D TF+ Sbjct 120 WKEMRRFSLM---TLRNFGMGKRSIEDRIQEEARCLVEELRKTNASPCDPTFIL 170 Range 8: 425 to 464 Score:47.0 bits(110), Expect:0.022, Method:Compositional matrix adjust., Identities:23/40(58%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK +CV E LA+M LFLF +IL+NF L+S V PK+L Sbjct 425 FSAGKRMCVGEGLARMELFLFLTSILQNFKLQSLVEPKDL 464 >RecName: Full=Endogenous retrovirus group K member 9 Pol protein; AltName: Full=HERV-K(C6) Gag-Pol protein; AltName: Full=HERV-K109 Gag-Pol protein; AltName: Full=HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein; Includes: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Includes: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=p66 RT [Homo sapiens] Sequence ID: P63128.3 Length: 1117 Range 1: 667 to 884 Score:139 bits(350), Expect:1e-76, Method:Compositional matrix adjust., Identities:85/219(39%), Positives:119/219(54%), Gaps:1/219(0%) Query 25102 LDLHSTTRLMLTPQMGVQPIDTDFRGPLPKDTVGLLLGRSSSALKGLQIVPGVIDPDYLG 24923 +DL + + L P Q I T GPLP+ TVGL+LGRSS LKG+QI V+D DY G Sbjct 667 VDLCTIQAVSLLPGEPPQKIPTGVYGPLPEGTVGLILGRSSLNLKGVQIHTSVVDSDYKG 726 Query 24922 TVKVLVTSPQGITAISPGDRIAQLLLLPSLHRHFPAENRVRGDGGLGSTGSRFAFISLEP 24743 ++++++S +A SPGDRIAQLLLLP + R+ G G TG + S Sbjct 727 EIQLVISSSVPWSA-SPGDRIAQLLLLPYIKGGNSEIKRIGGLGSTDPTGKAAYWASQVS 785 Query 24742 GNCPMLTLTVEGCSFLGLLDTGADRSVISVHDWPPRWPTQTSSQALCGLGYEMAPLLSSK 24563 N P+ ++G F GL+DTGAD S+I+++ WP WP Q + L G+G S + Sbjct 786 ENRPVCKAIIQGKQFEGLVDTGADVSIIALNQWPKNWPKQKAVTGLVGIGTASEVYQSME 845 Query 24562 ELTWKDAEGRSGKITPYIIDIPVTLWGRDVLINLDMRLT 24446 L + + + P I IP+ LWGRD+L +T Sbjct 846 ILHCLGPDNQESTVQPMITSIPLNLWGRDLLQQWGAEIT 884 Range 2: 935 to 1051 Score:100 bits(248), Expect:1e-76, Method:Compositional matrix adjust., Identities:66/117(56%), Positives:86/117(73%), Gaps:4/117(3%) Query 24309 FLGA--IE--GGIPITWKTEEHMWIPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNT 24142 FLGA IE IP+TWKTE+ +W+ Q PL +KL A L +EQL+ GHI+PS SPWN+ Sbjct 935 FLGAATIEPPKPIPLTWKTEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNS 994 Query 24141 LIFVIKKKSEKWQL*HDLRAINSQMQIMGRIQRGLPPLSSipgdwpiiiidIKDCFL 23971 +FVI+KKS KW++ DLRA+N+ +Q MG +Q GLP + IP DWP+IIID+KDCF Sbjct 995 PVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDWPLIIIDLKDCFF 1051 Range 3: 1047 to 1107 Score:82.4 bits(202), Expect:1e-76, Method:Compositional matrix adjust., Identities:35/61(57%), Positives:48/61(78%), Gaps:0/61(0%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K F++IPLA QD +FAFT+P++NN+EP +QW VL QGM NSPT+CQ +V +ALQP+ Sbjct 1047 KDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPV 1106 Query 23804 R 23802 + Sbjct 1107 K 1107 Range 4: 892 to 933 Score:37.0 bits(84), Expect:1e-76, Method:Compositional matrix adjust., Identities:17/42(40%), Positives:24/42(57%), Gaps:0/42(0%) Query 24434 PQAKDMMIKMGYMPRKGLGKNLQGQADPVLLNSKRDRTGLGF 24309 P ++ +M K GY+P KGLGKN G P + R G+G+ Sbjct 892 PTSQKIMTKRGYIPGKGLGKNEDGIKIPFEAKINQKREGIGY 933 Range 5: 282 to 616 Score:148 bits(373), Expect:5e-33, Method:Compositional matrix adjust., Identities:104/338(31%), Positives:164/338(48%), Gaps:37/338(10%) Query 26150 FPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFVIAQIEALGR 26010 FPV L+ G Q EP K +K + + VK YG N+ ++ ++++ Sbjct 282 FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKILKDMKEGVKQYGPNSPYMRTLLDSIAH 341 Query 26009 -YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIG 25833 + L P DW LA++ LSP ++L +K++ + Q N A A+P + DAD LLGIG Sbjct 342 GHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNIDADQLLGIG 399 Query 25832 R---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIV 25662 + Q + Q+ I ++AW+ + + G+ + V QG EP+ DFVA + Sbjct 400 QNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEPYPDFVARLQ 459 Query 25661 ESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WMKVCREIGGP 25500 + A K D +++ + YE +C +AI P K K G +V ++K C IGG Sbjct 460 DVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGA 519 Query 25499 LTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ------SNSRPPQ 25353 + L A I + ++ C+ CG+ GH + CP + + + R P Sbjct 520 MHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREP- 578 Query 25352 PRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 579 PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 6: 5 to 99 Score:47.4 bits(111), Expect:0.023, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Endogenous retrovirus group K member 21 Gag polyprotein; AltName: Full=HERV-K_12q14.1 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: P62683.2 Length: 666 Range 1: 278 to 616 Score:145 bits(366), Expect:5e-33, Method:Compositional matrix adjust., Identities:104/347(30%), Positives:165/347(47%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVMLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ L P ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLLPSQFLQFKTWWIDGVQEQVQRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V Q EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQSSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K D +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C IGG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGIGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.0 bits(110), Expect:0.024, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp21; Contains: RecName: Full=Protein p3; Contains: RecName: Full=Protein p8; Contains: RecName: Full=Protein n; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein p14 [Mouse mammary tumor virus (STRAIN C3H)] Sequence ID: P11284.3 Length: 591 Range 1: 265 to 578 Score:144 bits(362), Expect:7e-33, Method:Compositional matrix adjust., Identities:99/322(31%), Positives:151/322(46%), Gaps:32/322(9%) Query 26162 LGLSFPVFL----DVNGQQHHEPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTP 25995 L +FPV D + EP+ KT+K+L +V+T G +A + + ++ + LTP Sbjct 265 LTFTFPVVFMGESDDDDTPVWEPLPLKTLKELQSAVRTMGPSAPYTLQVVDMVASQWLTP 324 Query 25994 GDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHWDADMLLGIGRF--AL 25821 DW ARA LSPG Y+ W++ YE + + A + DMLLG G+F Sbjct 325 SDWHQTARATLSPGDYVLWRT-EYEEKSKETVQKTAGKR--KGKVSLDMLLGTGQFLSPS 381 Query 25820 DQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIF 25641 Q V + A+ AW+A+P G L + QG E + F++ + E+ ++ Sbjct 382 SQIKLSKDVLKDVTTNAVLAWRAIPPPGVKKTVLAGLKQGNEESYETFISRLEEAVYRVM 441 Query 25640 GDPDTVMPLIKQLVYEQCTKDCSTAITPYKHKG-LEVWMKVCREIGGPLTNVGLA-AAMI 25467 + LIKQL +E C I P + G ++ +++ C + P G+A AA + Sbjct 442 PRGEGSDILIKQLAWENANSLCQDLIRPMRKTGTMQDYIRACLD-ASPAVVQGMAYAAAM 500 Query 25466 QLKRKSTM----------------ETCFRCGRKGHYRSQCPDRSGEQSNSRPPQPRLCPR 25335 + ++ ST CF CG+ GH + C + G + R P P LCPR Sbjct 501 RGQKYSTFVKQTYGGGKGGQGSKGPVCFSCGKTGHIKRDCKEEKG---SKRAP-PGLCPR 556 Query 25334 CKKGNHWANECRSIKDLDGRTL 25269 CKKG HW +EC+S D DG L Sbjct 557 CKKGYHWKSECKSKFDKDGNPL 578 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; AltName: Full=Pr72; Contains: RecName: Full=Matrix protein p19; Contains: RecName: Full=Core protein p16; Contains: RecName: Full=Capsid protein p35; AltName: Full=Capsid protein p34; Contains: RecName: Full=Probable nucleocapsid protein p10 [Squirrel monkey retrovirus] Sequence ID: P21411.3 Length: 740 Range 1: 379 to 673 Score:145 bits(365), Expect:1e-32, Method:Compositional matrix adjust., Identities:103/305(34%), Positives:153/305(50%), Gaps:36/305(11%) Query 26105 VDFKTIKQLADSVKTYGVNAAFVIAQIEALGRYCLTPGDWGSLARACLSPGKYLDWKSFL 25926 ++ KTI+++ +V YG A F +A +E+L LTP DW L+RA LS G + WKS Sbjct 379 LNLKTIEKIKTAVANYGPTAPFTVALVESLSERWLTPSDWFFLSRAALSGGDNILWKS-E 437 Query 25925 YENANTQAAINLASGADPQRHWDADM-LLGIGRFALD--QTGYPDLVYSQINEIAIKAWK 25755 YE+ + Q A P+ D + + G + + Q +P + +QI +KAWK Sbjct 438 YEDISKQFAERTRVRPPPK---DGPLKIPGASPYQNNDKQAQFPPGLLTQIQSAGLKAWK 494 Query 25754 ALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDC 25575 LP +GA + +L K+ QGP E +SDFV+ + E+A ++FG ++ +K L YE C Sbjct 495 RLPQKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPAC 554 Query 25574 STAITPYKHKGLE-----VWM----KVCREIGGPLTNVGLAAAMIQLKRKS-----TMET 25437 +AI P++ K L +W V IG L N LA A + R + T Sbjct 555 QSAIRPFRQKELSTMSPLLWYCSAHAVGLAIGAALQN--LAPAQLLEPRPAFAIIVTNPA 612 Query 25436 CFRCGRKGHYRSQCPDRSGEQSNSRPPQPRL---------CPRCKKGNHWANECRSIKDL 25284 F+ + Q P + Q N+ PQ L CPRCKKG HWA+ECRS D+ Sbjct 613 IFQ--ETAPKKIQPPTQLPTQPNA--PQASLIKNLGPTTKCPRCKKGFHWASECRSRLDI 668 Query 25283 DGRTL 25269 +G+ + Sbjct 669 NGQPI 673 >RecName: Full=Cytochrome P450 2C37; AltName: Full=CYPIIC37; Flags: Precursor [Mus musculus] Sequence ID: P56654.2 Length: 490 Range 1: 56 to 161 Score:141 bits(356), Expect:1e-32, Method:Compositional matrix adjust., Identities:82/164(50%), Positives:90/164(54%), Gaps:58/164(35%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAF 57830 SKVYGPV+TLY G KPTV+LHGYEAVKEAL+DHGEEFA RG FPV +K +G Sbjct 56 NLSKVYGPVYTLYLGRKPTVVLHGYEAVKEALVDHGEEFAGRGRFPVFDKATNGMG---- 111 Query 57831 L*VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHG 58010 +AF SKG Sbjct 112 -----LAF-------SKG------------------------------------------ 117 Query 58011 NRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 N WK RRF+L TLRNLGMGKR+IED VQEEARCLVEELRKTNG Sbjct 118 NVWKNTRRFSLMTLRNLGMGKRSIEDRVQEEARCLVEELRKTNG 161 Range 2: 156 to 232 Score:113 bits(283), Expect:2e-23, Method:Compositional matrix adjust., Identities:55/77(71%), Positives:62/77(80%), Gaps:1/77(1%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + ++GSPCDPTFILGCAPCNVICSIIFQ+RFDYKD+DFLNLMEKLNE KILSSPW Q+ Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLMEKLNEITKILSSPWLQI 215 Query 59143 -NKIHLLLETCDYSFSQ 59190 N LL+ C S Q Sbjct 216 CNTYPALLDYCPGSHKQ 232 Range 3: 156 to 213 Score:101 bits(252), Expect:2e-19, Method:Compositional matrix adjust., Identities:45/58(78%), Positives:53/58(91%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++GSPCDPTFILGCAPCNVICSIIFQ+ FDYKD+DFL+LMEKLNE KI+SSPW+ Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLMEKLNEITKILSSPWL 213 Range 4: 208 to 306 Score:85.1 bits(209), Expect:3e-14, Method:Compositional matrix adjust., Identities:45/102(44%), Positives:62/102(60%), Gaps:13/102(12%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ +P L+DYCPGSH KN +N+LL+KIKEH+ESLDVT PRDFI Sbjct 208 LSSPW---LQICNTYPALLDYCPGSHKQFFKNYASIKNFLLEKIKEHEESLDVTIPRDFI 264 Query 60358 DYYLIKWKQ----------VKHLYIFIYFIFQVNSQSLKTYL 60453 DY+LI Q ++HL I + +F +++ T L Sbjct 265 DYFLINGGQEDGNQPLQNRLEHLAITVTDLFSAGTETTSTTL 306 Range 5: 57 to 152 Score:80.9 bits(198), Expect:7e-13, Method:Compositional matrix adjust., Identities:55/154(36%), Positives:67/154(43%), Gaps:58/154(37%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLGKCTCL 38301 SKV G V+TLY G K V+LHGY A KE L+DHGEEF RG FPV +K G+G Sbjct 57 LSKVYGPVYTLYLGRKPTVVLHGYEAVKEALVDHGEEFAGRGRFPVFDKATNGMG----- 111 Query 38302 *VIWVAFTVRKKIDSKGQT*SWGSDYASLGLCLRQCSPSSWDHIVVSIPICSGIAFSHGN 38481 +AF SKG W Sbjct 112 ----LAF-------SKGNV--W-------------------------------------- 120 Query 38482 RWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 K RRF+LMTL+NLGMGKR++ + + L Sbjct 121 --KNTRRFSLMTLRNLGMGKRSIEDRVQEEARCL 152 Range 6: 223 to 273 Score:64.7 bits(156), Expect:8e-08, Method:Compositional matrix adjust., Identities:29/51(57%), Positives:37/51(72%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 +DYC GS+ KN +N++L+KIKEH+ESLDVT P DFIDY+LI Q Sbjct 223 LDYCPGSHKQFFKNYASIKNFLLEKIKEHEESLDVTIPRDFIDYFLINGGQ 273 Range 7: 120 to 170 Score:52.8 bits(125), Expect:4e-04, Method:Compositional matrix adjust., Identities:29/54(54%), Positives:35/54(64%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK R + +L G G++SIEDRVQEE +CLVEELRKTNG D TF+ Sbjct 120 WKNTRRFSLMTLRNL---GMGKRSIEDRVQEEARCLVEELRKTNGSPCDPTFIL 170 Range 8: 426 to 467 Score:50.8 bits(120), Expect:0.002, Method:Compositional matrix adjust., Identities:25/42(60%), Positives:31/42(73%), Gaps:0/42(0%) Query 1927 IYFFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 I F TGK IC E LA+M LFLF +IL+NFNLK V+PK++ Sbjct 426 IPFSTGKRICAGEGLARMELFLFLTSILQNFNLKPLVHPKDI 467 >RecName: Full=Endogenous retrovirus group K member 19 Gag polyprotein; AltName: Full=HERV-K(C19) Gag protein; AltName: Full=HERV-K_19q11 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q9YNA8.3 Length: 666 Range 1: 278 to 616 Score:144 bits(362), Expect:2e-32, Method:Compositional matrix adjust., Identities:104/347(30%), Positives:166/347(47%), Gaps:42/347(12%) Query 26177 EVWK*LGLSFPVFLDV----NGQQHHEP---------VDFKTIKQLADSVKTYGVNAAFV 26037 E W+ FPV L+ G Q EP K +K + + VK YG N+ ++ Sbjct 278 EAWQ-----FPVTLEPMPPGEGAQEGEPPTVEARYKSFSIKMLKDMKEGVKQYGPNSPYM 332 Query 26036 IAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWKSFLYENANTQAAINLASGADPQRHW 25860 ++++ + L P DW LA++ LSP ++L +K++ + Q N A A+P + Sbjct 333 RTLLDSIAHGHRLIPYDWEILAKSSLSPSQFLQFKTWWIDGVQEQVRRNRA--ANPPVNI 390 Query 25859 DADMLLGIGR---FALDQTGYPDLVYSQINEIAIKAWKALPNRGAVSGNLTKVLQGPTEP 25689 DAD LLGIG+ Q + Q+ I ++AW+ + + G+ + V QG EP Sbjct 391 DADQLLGIGQNWSTISQQALMQNEAIEQVRAICLRAWEKIQDPGSTCPSFNTVRQGSKEP 450 Query 25688 FSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCTKDCSTAITPYKHK---GLEV---WM 25527 + DFVA + + A K +++ + YE +C +AI P K K G +V ++ Sbjct 451 YPDFVARLQDVAQKSIAIEKARKVIVELMAYENPNPECQSAIKPLKGKVPAGSDVISEYV 510 Query 25526 KVCREIGGPLTNVGLAAAMIQ-----LKRKSTMETCFRCGRKGHYRSQCPDRSGEQ---- 25374 K C +GG + L A I + ++ C+ CG+ GH + CP + + Sbjct 511 KACDGMGGAMHKAMLMAQAITGVVLGGQVRTFGGKCYNCGQIGHLKKNCPVLNKQNITIQ 570 Query 25373 --SNSRPPQPRLCPRCKKGNHWANECRSIKDLDGRTLATGYGGAQPK 25239 + R P P LCPRCKKG HWA++CRS D +G+ L+ QP+ Sbjct 571 ATTTGREP-PDLCPRCKKGKHWASQCRSKFDKNGQPLSGNEQRGQPQ 616 Range 2: 5 to 99 Score:47.4 bits(111), Expect:0.024, Method:Compositional matrix adjust., Identities:29/95(31%), Positives:45/95(47%), Gaps:1/95(1%) Query 26903 KSMGNSHSTPLLSALQELLGQRKLKIEKKILLSFLDECNHCAPWFIVSGSLKLRAWDKVG 26724 KS S LS ++ LL + +K+ K L+ PWF G+L L+ W ++G Sbjct 5 KSKIKSKYASYLSFIKILLKRGGVKVSTKNLIKLFQIIEQFCPWFPEQGTLDLKDWKRIG 64 Query 26723 KDLDRETSEGKLKPGKKLL-WHMVHACLEDKQCEE 26622 K+L + +G + P W ++ A LE Q EE Sbjct 65 KELKQAGRKGNIIPLTVWNDWAIIKAALEPFQTEE 99 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-1 isolate Mel 15] Sequence ID: P0C211.2 Length: 1462 Range 1: 682 to 962 Score:103 bits(257), Expect:3e-31, Method:Compositional matrix adjust., Identities:89/288(31%), Positives:140/288(48%), Gaps:18/288(6%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K AF+ IPL Q FAFT+P N P Y W VL QG NSPT+ ++ + LQPI Sbjct 682 KDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLASILQPI 741 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKG-EYLG 23628 R FP+ I+ +MDDILL++ L+ + L ++ L ++ +K Q ++LG Sbjct 742 RQAFPQCVILQYMDDILLASPSPEDLQQLSEATMASLISHGLPVSQDKTQQTPGTIKFLG 801 Query 23627 TKITPHSISPQKIELRKDHLK-TLHDFQKLLGSINWIQ---PYIKMPNVDLQPLYEILKG 23460 I+P+ I+ + + L + Q LLG I W+ P ++ P L LY L+G Sbjct 802 QIISPNHITYDAVPTVPIRSRWALPELQALLGEIQWVSKGTPTLRQP---LHSLYCALQG 858 Query 23459 DSQLTSPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLW---QQ 23289 + L SL ++++ L + R + +L I+ T +T V++ QQ Sbjct 859 HTDPRDQIYLNPSQVQSLMQLQQALSQNCRSRLAQTLPLLGAIMLTLTGTTTVVFQSKQQ 918 Query 23288 GPLLWIY---PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKI 23154 PL+W++ PH S + SAV +L K +Q +G+L + I Sbjct 919 WPLVWLHAPLPHTSQCPWGQLLASAV----LLLDKYTLQSYGLLCQTI 962 Range 2: 593 to 668 Score:61.2 bits(147), Expect:3e-31, Method:Compositional matrix adjust., Identities:33/76(43%), Positives:43/76(56%), Gaps:0/76(0%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQL*HDLRAINSQ 24070 I Q PL+ E+L A LV + L+ GHI+P T P N +F +KK + W+ HDLRA NS Sbjct 593 ISQFPLNPERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSL 652 Query 24069 MQIMGRIQRGLPPLSS 24022 + G P LSS Sbjct 653 TVDLSSSSPGPPDLSS 668 Range 3: 1226 to 1440 Score:101 bits(251), Expect:1e-24, Method:Compositional matrix adjust., Identities:72/222(32%), Positives:110/222(49%), Gaps:26/222(11%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQ D+TH L HV VDT SG I AT E + AIS L+ A GK + Sbjct 1226 IWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAQLGKPSYIN 1285 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGRT 22033 TDNGPAY ++ F + C ++ ++HTT +PYNP G+VE+++ LK LL K + Sbjct 1286 TDNGPAYISQDFLSMCTSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYK-----YFTDR 1340 Query 22032 P----REQLSLALFTRNFLILDAHGCSAA--DRHAATK----PMTNADV---------KW 21910 P LS+AL+T N L + H C H + + P T++ + K Sbjct 1341 PDLPMDNALSIALWTINHLNVLTH-CHKTRWQLHHSPRLQPIPETHSLISKQTHWYYFKL 1399 Query 21909 KDVLTGEWCGPDPVILRSRGAVCVFP*NQDNPIWVPERLTRK 21784 + + +W GP + + GA + P + ++ W+P RL ++ Sbjct 1400 PGLNSRQWKGPQEALQEAAGAALI-PVSANSAQWIPWRLLKQ 1440 Range 4: 1091 to 1215 Score:41.2 bits(95), Expect:1e-24, Method:Compositional matrix adjust., Identities:40/139(29%), Positives:62/139(44%), Gaps:16/139(11%) Query 22816 FNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTLLELQKLIWARKNKFFIQHIRVHTNLPG 22637 N+ DS Y+ +R+L + G + ++ L +L+ ++ H+R HTNLP Sbjct 1091 LNIFLDSKYLYHYLRTLAL-GTFQGKSSQAPFQALLPRLL--AHKVIYLHHVRSHTNLPD 1147 Query 22636 PMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHV--PAFTLQQKFKISRAAARNVVLS 22463 P++ NAL D I +P E H H A TLQ + A N++ S Sbjct 1148 PISKLNALTDALLITP-ILQLSPA----ELHSFTHCGQTALTLQ---GATTTEASNILRS 1199 Query 22462 CQNCVQFHPLPQVGINPRG 22406 C C + +P Q+ PRG Sbjct 1200 CHACRKNNPQHQM---PRG 1215 >RecName: Full=Cytochrome P450 2C9; AltName: Full=(R)-limonene 6-monooxygenase; AltName: Full=(S)-limonene 6-monooxygenase; AltName: Full=(S)-limonene 7-monooxygenase; AltName: Full=CYPIIC9; AltName: Full=Cholesterol 25-hydroxylase; AltName: Full=Cytochrome P-450MP; AltName: Full=Cytochrome P450 MP-4; AltName: Full=Cytochrome P450 MP-8; AltName: Full=Cytochrome P450 PB-1; AltName: Full=S-mephenytoin 4-hydroxylase [Homo sapiens] Sequence ID: P11712.3 Length: 490 Range 1: 56 to 161 Score:137 bits(345), Expect:3e-31, Method:Compositional matrix adjust., Identities:78/164(48%), Positives:88/164(53%), Gaps:58/164(35%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAF 57830 SKVYGPVFTLYFG+KP V+LHGYEAVKEALID GEEF+ RG FP+ E+ N+ G Sbjct 56 NLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFG---- 111 Query 57831 L*VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHG 58010 + F+ KK Sbjct 112 -----IVFSNGKK----------------------------------------------- 119 Query 58011 NRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 WKEIRRF+L TLRN GMGKR+IED VQEEARCLVEELRKT Sbjct 120 --WKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKA 161 Range 2: 159 to 215 Score:109 bits(272), Expect:5e-22, Method:Compositional matrix adjust., Identities:48/57(84%), Positives:51/57(89%), Gaps:0/57(0%) Query 58972 SSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + SPCDPTFILGCAPCNVICSIIF RFDYKDQ FLNLMEKLNEN+KILSSPW Q+ Sbjct 159 TKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQI 215 Range 3: 156 to 213 Score:102 bits(254), Expect:9e-20, Method:Compositional matrix adjust., Identities:46/58(79%), Positives:50/58(86%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + + SPCDPTFILGCAPCNVICSIIF FDYKDQ FL+LMEKLNENIKI+SSPWI Sbjct 156 LRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWI 213 Range 4: 57 to 152 Score:85.9 bits(211), Expect:2e-14, Method:Compositional matrix adjust., Identities:56/154(36%), Positives:70/154(45%), Gaps:58/154(37%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLGKCTCL 38301 SKV G VFTLYFG+K IV+LHGY A KE LID GEEF+ RG FP+AE+ N+G G Sbjct 57 LSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFG----- 111 Query 38302 *VIWVAFTVRKKIDSKGQT*SWGSDYASLGLCLRQCSPSSWDHIVVSIPICSGIAFSHGN 38481 + F+ KK W I Sbjct 112 ----IVFSNGKK----------------------------WKEI---------------- 123 Query 38482 RWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 RRF+LMTL+N GMGKR++ + + L Sbjct 124 -----RRFSLMTLRNFGMGKRSIEDRVQEEARCL 152 Range 5: 208 to 276 Score:75.1 bits(183), Expect:5e-11, Method:Compositional matrix adjust., Identities:34/72(47%), Positives:53/72(73%), Gaps:3/72(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ F +IDY PG+H L KN+ + ++Y+L+K+KEHQES+D+ NP+DFI Sbjct 208 LSSPW---IQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFI 264 Query 60358 DYYLIKWKQVKH 60393 D +L+K ++ KH Sbjct 265 DCFLMKMEKEKH 276 Range 6: 223 to 276 Score:64.7 bits(156), Expect:8e-08, Method:Compositional matrix adjust., Identities:29/54(54%), Positives:41/54(75%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 IDY G++ L KNV ++YIL+K+KEHQES+D+ NP DFID +L+K ++ KH Sbjct 223 IDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKH 276 Range 7: 120 to 170 Score:50.8 bits(120), Expect:0.001, Method:Compositional matrix adjust., Identities:28/54(52%), Positives:34/54(62%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK + R + L FG G++SIEDRVQEE +CLVEELRKT D TF+ Sbjct 120 WKEIRRFSLM---TLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFIL 170 Range 8: 428 to 467 Score:50.4 bits(119), Expect:0.002, Method:Compositional matrix adjust., Identities:26/40(65%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK ICV E LA M LFLF +IL+NFNLKS V+PK L Sbjct 428 FSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNL 467 >RecName: Full=Cytochrome P450 2C4; AltName: Full=CYPIIC4; AltName: Full=Cytochrome P450 PBc4; AltName: Full=P1-88; AltName: Full=Progesterone 21-hydroxylase [Oryctolagus cuniculus] Sequence ID: P11371.1 Length: 487 Range 1: 56 to 161 Score:136 bits(343), Expect:4e-31, Method:Compositional matrix adjust., Identities:78/164(48%), Positives:91/164(55%), Gaps:58/164(35%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAF 57830 +FS+ YGPVFT+Y GMKPTV+LHGY+AVKEAL+D GEEFA RG FP+ EK+NK LG Sbjct 56 KFSERYGPVFTVYLGMKPTVVLHGYKAVKEALVDLGEEFAGRGHFPIAEKVNKGLG---- 111 Query 57831 L*VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHG 58010 + FT +W Sbjct 112 -----IVFTNAN---------TW------------------------------------- 120 Query 58011 NRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 KE+RRF+L TLRN GMGKR+IED VQEEARCLVEELRKTN Sbjct 121 ---KEMRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTNA 161 Range 2: 163 to 215 Score:102 bits(253), Expect:1e-19, Method:Compositional matrix adjust., Identities:43/53(81%), Positives:49/53(92%), Gaps:0/53(0%) Query 58984 PCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 PCDPTFILGCAPCNVICS+I NRFDYKD++FL LME+LNEN++ILSSPW QV Sbjct 163 PCDPTFILGCAPCNVICSVILHNRFDYKDEEFLKLMERLNENIRILSSPWLQV 215 Range 3: 156 to 213 Score:96.3 bits(238), Expect:8e-18, Method:Compositional matrix adjust., Identities:40/58(69%), Positives:50/58(86%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++ PCDPTFILGCAPCNVICS+I N FDYKD++FL LME+LNENI+I+SSPW+ Sbjct 156 LRKTNALPCDPTFILGCAPCNVICSVILHNRFDYKDEEFLKLMERLNENIRILSSPWL 213 Range 4: 56 to 152 Score:88.6 bits(218), Expect:2e-15, Method:Compositional matrix adjust., Identities:55/155(35%), Positives:73/155(47%), Gaps:58/155(37%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLGKCTC 38298 +FS+ G VFT+Y GMK V+LHGY A KE L+D GEEF RG FP+AEK+NKGLG Sbjct 56 KFSERYGPVFTVYLGMKPTVVLHGYKAVKEALVDLGEEFAGRGHFPIAEKVNKGLG---- 111 Query 38299 L*VIWVAFTVRKKIDSKGQT*SWGSDYASLGLCLRQCSPSSWDHIVVSIPICSGIAFSHG 38478 + FT + ++W Sbjct 112 -----IVFT----------------------------NANTW------------------ 120 Query 38479 NRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 KE+RRF+LMTL+N GMGKR++ + + L Sbjct 121 ---KEMRRFSLMTLRNFGMGKRSIEDRVQEEARCL 152 Range 5: 219 to 303 Score:76.3 bits(186), Expect:2e-11, Method:Compositional matrix adjust., Identities:37/85(44%), Positives:55/85(64%), Gaps:7/85(8%) Query 60220 FPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFIDYYLIKWKQ----- 60384 FP L+DY PG H TL KN Y +N++++K+KEHQ+ LDV NPRDFID +LIK ++ Sbjct 219 FPALLDYFPGIHKTLLKNADYTKNFIMEKVKEHQKLLDVNNPRDFIDCFLIKMEKENNLE 278 Query 60385 --VKHLYIFIYFIFQVNSQSLKTYL 60453 + L I ++ +F +++ T L Sbjct 279 FTLGSLVIAVFDLFGAGTETTSTTL 303 Range 6: 223 to 273 Score:60.5 bits(145), Expect:2e-06, Method:Compositional matrix adjust., Identities:27/51(53%), Positives:39/51(76%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 +DY G + TL KN +T+N+I++K+KEHQ+ LDV NP DFID +LIK ++ Sbjct 223 LDYFPGIHKTLLKNADYTKNFIMEKVKEHQKLLDVNNPRDFIDCFLIKMEK 273 Range 7: 120 to 170 Score:55.1 bits(131), Expect:7e-05, Method:Compositional matrix adjust., Identities:30/54(56%), Positives:35/54(64%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK M R + L FG G++SIEDRVQEE +CLVEELRKTN D TF+ Sbjct 120 WKEMRRFSLM---TLRNFGMGKRSIEDRVQEEARCLVEELRKTNALPCDPTFIL 170 Range 8: 425 to 464 Score:47.0 bits(110), Expect:0.022, Method:Compositional matrix adjust., Identities:23/40(58%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK +CV E LA+M LFLF +IL+NF L+S V PK+L Sbjct 425 FSAGKRMCVGEGLARMELFLFLTSILQNFKLQSLVEPKDL 464 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Human T-lymphotropic virus 2] Sequence ID: P03363.4 Length: 1461 Range 1: 682 to 956 Score:100 bits(250), Expect:1e-29, Method:Compositional matrix adjust., Identities:88/282(31%), Positives:131/282(46%), Gaps:18/282(6%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 AF+ IPL Q FAFT+P N P Y W VL QG NSPT+ + + L P+R Sbjct 682 AFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRK 741 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMG-KKGEYLGTK 23622 FP I+ +MDDILL++ L+ ++ L + L I+ EK Q + +LG Sbjct 742 MFPTSTIVQYMDDILLASPTNEELQQLSQLTLQALTTHGLPISQEKTQQTPGQIRFLGQV 801 Query 23621 ITPHSI---SPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQ 23451 I+P+ I S I ++ TL + Q +LG I W+ + LQ LY L G Sbjct 802 ISPNHITYESTPTIPIKSQ--WTLTELQVILGEIQWVSKGTPILRKHLQSLYSALHG--- 856 Query 23450 LTSPRA---LTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLW---QQ 23289 PRA LT +L +++ L+ R +L I + +T V++ Q Sbjct 857 YRDPRACITLTPQQLHALHAIQQALQHNCRGRLNPALPLLGLISLSTSGTTSVIFQPKQN 916 Query 23288 GPLLWIY-PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGIL 23166 PL W++ PH P +L + +A + K +QH+G L Sbjct 917 WPLAWLHTPH--PPTSLCPWGHLLACTILTLDKYTLQHYGQL 956 Range 2: 590 to 666 Score:58.2 bits(139), Expect:1e-29, Method:Compositional matrix adjust., Identities:31/77(40%), Positives:46/77(59%), Gaps:1/77(1%) Query 24249 IPQCPLS-SEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQL*HDLRAINS 24073 + Q PL+ E+L A +LVS+ L+ GHI+P + P N +F +KK + KW+ HDLRA N+ Sbjct 590 VDQFPLNLPERLQALNDLVSKALEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNA 649 Query 24072 QMQIMGRIQRGLPPLSS 24022 + G P L+S Sbjct 650 ITTTLTSPSPGPPDLTS 666 Range 3: 1225 to 1334 Score:86.3 bits(212), Expect:6e-20, Method:Compositional matrix adjust., Identities:42/110(38%), Positives:61/110(55%), Gaps:0/110(0%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQ DVTH HV VDT SG + + E + IS L+ + GK + Sbjct 1225 IWQGDVTHYKYKKYKYCLHVWVDTFSGAVSVSCKKKETSCETISAVLQAISLLGKPLHIN 1284 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK 22063 TDNGPA+ ++ F FC + ++KH+T +PYNP G+VE+ + +K LL K Sbjct 1285 TDNGPAFLSQEFQEFCTSYRIKHSTHIPYNPTSSGLVERTNGVIKNLLNK 1334 Range 4: 1089 to 1202 Score:40.4 bits(93), Expect:6e-20, Method:Compositional matrix adjust., Identities:37/125(30%), Positives:58/125(46%), Gaps:13/125(10%) Query 22819 SFNLISDSAYVVKTVRSLEIAGPIRSTTTVCQTL-LELQKLIWARKNKFFIQHIRVHTNL 22643 S N+ DS Y++K + SL I + T+ QTL L L+ + ++ H+R HTNL Sbjct 1089 SLNIFLDSKYLIKYLHSLAIGAFL--GTSAHQTLQAALPPLLQGKT--IYLHHVRSHTNL 1144 Query 22642 PGPMASNNALVDGSTHREFIFHAAPVDLTRE-FHQKFHVPAFTLQQKFKISRAAARNVVL 22466 P P+++ N D + A V LT + H H L F + A+++V Sbjct 1145 PDPISTFNEYTDS------LILAPLVPLTPQGLHGLTHCNQRAL-VSFGATPREAKSLVQ 1197 Query 22465 SCQNC 22451 +C C Sbjct 1198 TCHTC 1202 >RecName: Full=Endogenous retrovirus group K member 5 Gag polyprotein; AltName: Full=HERV-K(II) Gag protein; AltName: Full=HERV-K_3q12.3 provirus ancestral Gag polyprotein; Short=Gag polyprotein [Homo sapiens] Sequence ID: Q9HDB9.3 Length: 667 Range 1: 308 to 616 Score:132 bits(331), Expect:1e-28, Method:Compositional matrix adjust., Identities:98/314(31%), Positives:156/314(49%), Gaps:28/314(8%) Query 26111 EPVDFKTIKQLADSVKTYGVNAAFVIAQIEALGR-YCLTPGDWGSLARACLSPGKYLDWK 25935 EP K +K + + VK YG N+ ++ ++++ LTP DW SLA++ LS +YL +K Sbjct 308 EPFTMKMLKDIKEGVKQYGSNSPYIRTLLDSIAHGNRLTPYDWESLAKSSLSSSQYLQFK 367 Query 25934 SFLYENANTQAAINLASGADPQRHWDADMLLGIG---RFALDQTGYPDLVYSQINEIAIK 25764 ++ + Q N A+ P + DAD LLG G Q+ + Q+ I ++ Sbjct 368 TWWIDGVQEQVRKNQAT--KPTVNIDADQLLGTGPNWSTINQQSVMQNEAIEQVRAICLR 425 Query 25763 AWKALPNRGAVSGNLTKVLQGPTEPFSDFVAPIVESATKIFGDPDTVMPLIKQLVYEQCT 25584 AW + + G + + + QG EP+ DFVA + ++A K D + +++ + YE Sbjct 426 AWGKIQDPG-TAFPINSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENAN 484 Query 25583 KDCSTAITPYKHK---GLEV---WMKVCREIGGPLTNVGLAA-AMIQLKRKSTMET---- 25437 +C +AI P K K G++V ++K C IGG + L A AM L + T Sbjct 485 PECQSAIKPLKGKVPAGVDVITEYVKACDGIGGAMHKAMLMAQAMRGLTLGGQVRTFGKK 544 Query 25436 CFRCGRKGHYRSQCP--------DRSGEQSNSRPPQPRLCPRCKKGNHWANECRSIKDLD 25281 C+ CG+ GH + CP +++ N +P LCP+C KG HWAN+C S D D Sbjct 545 CYNCGQIGHLKRSCPVLNKQNIINQAITAKNKKPS--GLCPKCGKGKHWANQCHSKFDKD 602 Query 25280 GRTLATGYGGAQPK 25239 G+ L+ QP+ Sbjct 603 GQPLSGNRKRGQPQ 616 >RecName: Full=LINE-1 retrotransposable element ORF1 protein; Short=L1ORF1p; AltName: Full=LINE retrotransposable element 1; AltName: Full=LINE1 retrotransposable element 1 [Homo sapiens] Sequence ID: Q9UN81.1 Length: 338 Range 1: 144 to 288 Score:126 bits(316), Expect:1e-28, Method:Compositional matrix adjust., Identities:65/145(45%), Positives:92/145(63%), Gaps:0/145(0%) Query 66063 QNIQEIKDTMRRSNLRIIGIEESEDSQLKGPVNTFNKIIEENFPNLKKEMPINIQEDYRT 65884 Q++QEI D ++R NLR+IG+ ES+ NT II+ENFPNL ++ + IQE RT Sbjct 144 QSLQEIWDYVKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRT 203 Query 65883 PSRLDQKRKSSCHIIVETKNAQNKERILKAVREKGQITYKGRPIRITPDFSPDTM*ARRC 65704 P R +R + HIIV + KE++L+A REKG++T KG+PIR+T D S +T+ ARR Sbjct 204 PQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTADLSAETLQARRE 263 Query 65703 RKDVIQILRKHKCQHRLLYPVKLSI 65629 + IL++ Q R+ YP KLS Sbjct 264 WGPIFNILKEKNFQPRISYPAKLSF 288 Range 2: 176 to 313 Score:114 bits(286), Expect:8e-25, Method:Compositional matrix adjust., Identities:58/138(42%), Positives:82/138(59%), Gaps:0/138(0%) Query 18556 NYLQKIIEENFPNLKKEMPMNIQEDYRISNRLDQKRNSSCHIIVKTANAENKERILKAVR 18377 N LQ II+ENFPNL ++ + IQE R R +R + HIIV+ E KE++L+A R Sbjct 176 NTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 235 Query 18376 GKGHVTYKSRPVNITPDFSPDTMKARRPWTYVIQTLREHNCLHRLLYLVKLSINVDGETK 18197 KG VT K +P+ +T D S +T++ARR W + L+E N R+ Y KLS +GE K Sbjct 236 EKGRVTLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIK 295 Query 18196 IFHDKSKFTQYLSTNPAV 18143 F DK +++T PA+ Sbjct 296 YFIDKQMLRDFVTTRPAL 313 Range 3: 227 to 313 Score:68.6 bits(166), Expect:2e-09, Method:Compositional matrix adjust., Identities:35/87(40%), Positives:51/87(58%), Gaps:0/87(0%) Query 350 KTKNIKRVRGKGQVMYKGRVIRITPDFSPESIKARRS*TNVIKTIRGHKSQPRLLYPAKT 171 K K ++ R KG+V KG+ IR+T D S E+++ARR + ++ QPR+ YPAK Sbjct 227 KEKMLRAAREKGRVTLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKL 286 Query 170 SINIDGETKIFHDKTKFTKYLSTNPAL 90 S +GE K F DK +++T PAL Sbjct 287 SFISEGEIKYFIDKQMLRDFVTTRPAL 313 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)] Sequence ID: P16088.1 Length: 1124 Range 1: 269 to 473 Score:99.4 bits(246), Expect:2e-28, Method:Compositional matrix adjust., Identities:64/207(31%), Positives:106/207(51%), Gaps:3/207(1%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A+++IPL P + AFTLP NN P + + W L QG SP + Q + +QP Sbjct 269 AYFTIPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIR 328 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPE-KVQMGKKGEYLGTK 23622 Q P+L I +MDDI + + + ++ L F PE K+Q ++G + Sbjct 329 QNPQLDIYQYMDDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQEEPPYTWMGYE 388 Query 23621 ITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTS 23442 + P + + Q+ +L TL++ QKL G INW I P++ ++ L +++G+ L S Sbjct 389 LHPLTWTIQQKQLDIPEQPTLNELQKLAGKINWASQAI--PDLSIKALTNMMRGNQNLNS 446 Query 23441 PRALTKDARFSLRKVEKGLEKAMLRRY 23361 R TK+AR ++K +K +E+ + Y Sbjct 447 TRQWTKEARLEVQKAKKAIEEQVQLGY 473 Range 2: 177 to 250 Score:55.8 bits(133), Expect:2e-28, Method:Compositional matrix adjust., Identities:30/74(41%), Positives:44/74(59%), Gaps:2/74(2%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSEKWQL*HDLRAIN 24076 I Q PL++EK+ A E+V + G ++ S +PWNT +F IKKKS KW++ D R +N Sbjct 177 IKQWPLTNEKIEALTEIVERLEKEGKVKRADSNNPWNTPVFAIKKKSGKWRMLIDFRELN 236 Query 24075 SQMQIMGRIQRGLP 24034 + +Q GLP Sbjct 237 KLTEKGAEVQLGLP 250 Range 3: 905 to 1123 Score:72.4 bits(176), Expect:6e-10, Method:Compositional matrix adjust., Identities:63/228(28%), Positives:100/228(43%), Gaps:25/228(10%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMD TH K V + SG I A +++ E A + L++ +A ++ L+ Sbjct 905 IWQMDCTHFDG----KIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTE-LQ 959 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGRT 22033 TDNGP + + M VKH G+P NPQ Q +VE + TLK +QK + + Sbjct 960 TDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQK---FLPETTS 1016 Query 22032 PREQLSLALFTRNF-------------LILDAHGCSAADRHAATKPMTNAD-VKWKDVLT 21895 LSLA+ + NF L+ D +A A + +KD Sbjct 1017 LDNALSLAVHSLNFKRRGRIGGMAPYELLAQQESLRIQDYFSAIPQKLQAQWIYYKDQKD 1076 Query 21894 GEWCGPDPVILRSRGAVCVFP*NQDNPIWVPERLTRKLPP--SIPEDE 21757 +W GP V +G+V + + +P R R++P ++PE + Sbjct 1077 KKWKGPMRVEYWGQGSVLLKD-EEKGYFLIPRRHIRRVPEPCALPEGD 1123 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17757.3 Length: 1462 Range 1: 724 to 900 Score:102 bits(254), Expect:6e-27, Method:Compositional matrix adjust., Identities:73/184(40%), Positives:108/184(58%), Gaps:13/184(7%) Query 23978 AFYSIPLAPQDSVQF-AFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIR 23802 A++SIPL +D Q+ AFTLPS+NN EP+K Y + VL QG SP + Q ++Q L+P R Sbjct 724 AYFSIPLH-EDFRQYTAFTLPSVNNAEPEKRYVYKVLPQGWKGSPAIFQFMMRQILEPFR 782 Query 23801 DQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEY 23634 P + +I +MDDIL+ A D + LE + KVV K L N F P EK Q ++ Sbjct 783 KANPDVILIQYMDDILI-ASDRTGLE--HDKVVLQLKELLNGLGFSTPDEKFQKDPPFQW 839 Query 23633 LGTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGD 23457 +G ++ P QKI+L + + T++D QKL+G +NW Q Y P + + L ++++G Sbjct 840 MGYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCKLIRGK 896 Query 23456 SQLT 23445 LT Sbjct 897 MTLT 900 Range 2: 633 to 705 Score:48.1 bits(113), Expect:6e-27, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 633 QWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNR 692 Query 24072 QMQIMGRIQRGLP 24034 Q IQ G+P Sbjct 693 VTQDFTEIQLGIP 705 Range 3: 1229 to 1367 Score:64.3 bits(155), Expect:2e-07, Method:Compositional matrix adjust., Identities:47/158(30%), Positives:72/158(45%), Gaps:19/158(12%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMD TH+ K V+V SG I A ++ E R L++ + W + L Sbjct 1229 VWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-HLH 1283 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGRT 22033 TDNGP +T++ + ++ + G+PYNPQ QG+VE + LK + + Sbjct 1284 TDNGPNFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRI--------- 1334 Query 22032 PREQLSLALFTRNFLILDAHGCSAADRHAATKPMTNAD 21919 REQ + T ++L A C R MT A+ Sbjct 1335 -REQAN----TIETIVLMAVHCMNFKRRGGIGDMTPAE 1367 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1] Sequence ID: Q76634.3 Length: 1471 Range 1: 725 to 929 Score:101 bits(252), Expect:8e-27, Method:Compositional matrix adjust., Identities:73/210(35%), Positives:112/210(53%), Gaps:9/210(4%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL P AFTLPS+NN EP K Y + VL QG SP + Q +++ L P R Sbjct 725 AYFSIPLDPNFRQYTAFTLPSINNAEPGKRYIYKVLPQGWKGSPAIFQYSMRKVLDPFRK 784 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLE---NNQLFIAP-EKVQMGKKGEYL 23631 + II +MDDIL+ A D S LE + +VV L+ N+ F P EK Q +++ Sbjct 785 ANSDVIIIQYMDDILI-ASDRSDLE--HDRVVSQLKELLNDMGFSTPEEKFQKDPPFKWM 841 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQ 23451 G ++ P QKI+L + + T++D QKL+G +NW P + + + ++++G Sbjct 842 GYELWPKRWKLQKIQLPEKEVWTVNDIQKLVGVLNWAAQL--FPGIKTRHICKLIRGKMT 899 Query 23450 LTSPRALTKDARFSLRKVEKGLEKAMLRRY 23361 LT T+ A L++ + LE+ Y Sbjct 900 LTEEVQWTELAEAELQENKIILEQEQEGSY 929 Range 2: 632 to 706 Score:48.1 bits(113), Expect:8e-27, Method:Compositional matrix adjust., Identities:28/75(37%), Positives:43/75(57%), Gaps:3/75(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 I Q PLS EK+ A E+ + + G ++ P T+P+NT F IKK+ + KW++ D R + Sbjct 632 IRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKRDKNKWRMLIDFREL 691 Query 24078 NSQMQIMGRIQRGLP 24034 N Q +Q G+P Sbjct 692 NKVTQDFTEVQLGIP 706 Range 3: 1228 to 1421 Score:62.0 bits(149), Expect:9e-07, Method:Compositional matrix adjust., Identities:55/209(26%), Positives:85/209(40%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1228 LGTWQMDCTHLEG----KVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT-H 1282 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ + ++ T G+PYNPQ QG+VE + LK + Sbjct 1283 LHTDNGANFTSQDVKMAAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIRDQAVSI 1342 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + A N Sbjct 1343 ETVVLMAAHCMNFKRRGGIG-DMTPAERLVNMITTEQEIQF---------FQAKNLKFQN 1392 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV + Sbjct 1393 FQVYYREGRDQLWKGPGELLWKGEGAVLI 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_EHO] Sequence ID: Q89928.3 Length: 1464 Range 1: 723 to 917 Score:101 bits(251), Expect:2e-26, Method:Compositional matrix adjust., Identities:70/200(35%), Positives:107/200(53%), Gaps:11/200(5%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++S+PL P AFTLP++NN EP K Y + VL QG SP + Q + + L P R Sbjct 723 AYFSVPLDPDFRQYTAFTLPAVNNAEPGKRYLYKVLPQGWKGSPAIFQYTMAKVLDPFRK 782 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLE---NNQLFIAP-EKVQMGKKGEYL 23631 + II +MDDIL+ A D S LE + +VV L+ NN F P EK Q +++ Sbjct 783 ANNDVTIIQYMDDILV-ASDRSDLE--HDRVVSQLKELLNNMGFSTPEEKFQKDPPFKWM 839 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQ 23451 G ++ P QKI+L + + T++D QKL+G +NW P + + + ++++G Sbjct 840 GYELWPKKWKLQKIQLPEKEVWTVNDIQKLVGVLNWAAQL--FPGIKTRHICKLIRGKMT 897 Query 23450 LTSPRALTK--DARFSLRKV 23397 LT T+ +A F K+ Sbjct 898 LTEEVQWTELAEAEFQENKI 917 Range 2: 630 to 704 Score:47.4 bits(111), Expect:2e-26, Method:Compositional matrix adjust., Identities:28/75(37%), Positives:43/75(57%), Gaps:3/75(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 I Q PLS EK+ A E+ + + G ++ P T+P+N+ F IKKK + KW++ D R + Sbjct 630 IRQWPLSKEKILALKEICEKMEKEGQLEEAPPTNPYNSPTFAIKKKDKNKWRMLIDFREL 689 Query 24078 NSQMQIMGRIQRGLP 24034 N Q +Q G+P Sbjct 690 NKVTQEFTEVQLGIP 704 Range 3: 1226 to 1332 Score:58.9 bits(141), Expect:9e-06, Method:Compositional matrix adjust., Identities:36/112(32%), Positives:56/112(50%), Gaps:5/112(4%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1226 LGTWQMDCTHLEG----KVIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT-H 1280 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK 22063 L TDNG +T++ + ++ T G+PYNP+ QG+VE + LK + + Sbjct 1281 LHTDNGANFTSQDVKMAAWWIGIEQTFGVPYNPESQGVVEAMNHHLKNQIDR 1332 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05896.2 Length: 1448 Range 1: 710 to 904 Score:99.8 bits(247), Expect:2e-26, Method:Compositional matrix adjust., Identities:72/201(36%), Positives:110/201(54%), Gaps:13/201(6%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL + AFTLPS+NN EP K Y + VL QG SP + Q ++ L+P R Sbjct 710 AYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRK 769 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEYL 23631 P + ++ +MDDIL+ A D + LE + +VV K L N+ F +P EK Q +++ Sbjct 770 ANPDVTLVQYMDDILI-ASDRTDLE--HDRVVLQLKELLNSIGFSSPEEKFQKDPPFQWM 826 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDS 23454 G ++ P QKIEL + T++D QKL+G +NW Q Y P + + L +++G Sbjct 827 GYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGKM 883 Query 23453 QLTSPRALTK--DARFSLRKV 23397 LT T+ +A + K+ Sbjct 884 TLTEEVQWTEMAEAEYEENKI 904 Range 2: 617 to 691 Score:48.9 bits(115), Expect:2e-26, Method:Compositional matrix adjust., Identities:28/75(37%), Positives:43/75(57%), Gaps:3/75(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 + Q PLS EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R + Sbjct 617 LKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFREL 676 Query 24078 NSQMQIMGRIQRGLP 24034 N Q +Q G+P Sbjct 677 NRVTQDFTEVQLGIP 691 Range 3: 1213 to 1406 Score:62.4 bits(150), Expect:6e-07, Method:Compositional matrix adjust., Identities:54/209(26%), Positives:85/209(40%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1213 LGTWQMDCTHLEG----KIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT-H 1267 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG + ++ ++HT G+PYNPQ QG+VE + LK + Sbjct 1268 LHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSV 1327 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + + + N Sbjct 1328 ETIVLMAVHCMNFKRRGGIG-DMTPAERLINMITTEQEIQF---------QQSKNSKFKN 1377 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV + Sbjct 1378 FRVYYREGRDQLWKGPGELLWKGEGAVIL 1406 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12502.2 Length: 1449 Range 1: 711 to 888 Score:99.8 bits(247), Expect:2e-26, Method:Compositional matrix adjust., Identities:70/184(38%), Positives:101/184(54%), Gaps:11/184(5%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL + AFTLPS+NN EP K Y + VL QG SP + Q ++ L+P R Sbjct 711 AYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRK 770 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEYL 23631 P + +I +MDDIL+ A D + LE + +VV K L N F P EK Q +++ Sbjct 771 ANPDVTLIQYMDDILI-ASDRTDLE--HDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWM 827 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDS 23454 G ++ P QKIEL + T++D QKL+G +NW Q Y P + + L +++G Sbjct 828 GYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGKM 884 Query 23453 QLTS 23442 LT Sbjct 885 TLTE 888 Range 2: 620 to 692 Score:48.5 bits(114), Expect:2e-26, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PLS EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 620 QWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK 679 Query 24072 QMQIMGRIQRGLP 24034 Q +Q G+P Sbjct 680 VTQDFTEVQLGIP 692 Range 3: 1214 to 1407 Score:60.8 bits(146), Expect:2e-06, Method:Compositional matrix adjust., Identities:54/209(26%), Positives:84/209(40%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ W + Sbjct 1214 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPIT-H 1268 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ ++ T G+PYNPQ QG+VE + LK + Sbjct 1269 LHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSI 1328 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + + + N Sbjct 1329 ETIVLMAVHCMNFKRRGGIG-DMTPAERLVNMITTEQEIQF---------QQSKNSKFKN 1378 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV + Sbjct 1379 FRVYYREGRDQLWKGPGELLWKGEGAVIL 1407 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19505.2 Length: 1449 Range 1: 711 to 888 Score:99.4 bits(246), Expect:3e-26, Method:Compositional matrix adjust., Identities:70/184(38%), Positives:102/184(55%), Gaps:11/184(5%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL + AFTLPS+NN EP K Y + VL QG SP + Q ++ L+P R Sbjct 711 AYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRK 770 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEYL 23631 P + +I +MDDIL+ A D + LE + +VV K L N+ F P EK Q +++ Sbjct 771 ANPDVTLIQYMDDILI-ASDRTDLE--HDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWM 827 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDS 23454 G ++ P QKIEL + T++D QKL+G +NW Q Y P + + L +++G Sbjct 828 GYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGKM 884 Query 23453 QLTS 23442 LT Sbjct 885 TLTE 888 Range 2: 620 to 692 Score:48.5 bits(114), Expect:3e-26, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PLS EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 620 QWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK 679 Query 24072 QMQIMGRIQRGLP 24034 Q +Q G+P Sbjct 680 VTQDFTEVQLGIP 692 Range 3: 1214 to 1407 Score:61.2 bits(147), Expect:2e-06, Method:Compositional matrix adjust., Identities:54/209(26%), Positives:85/209(40%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1214 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT-H 1268 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ ++ T G+PYNPQ QG+VE + LK + Sbjct 1269 LHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSI 1328 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + + + N Sbjct 1329 ETIVLMAVHCMNFKRRGGIG-DMTPAERLVNMITTEQEIQF---------QQSKNSKFKN 1378 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV + Sbjct 1379 FRVYYREGRDQLWKGPGELLWKGEGAVIL 1407 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)] Sequence ID: P31822.1 Length: 1124 Range 1: 268 to 473 Score:94.7 bits(234), Expect:4e-26, Method:Compositional matrix adjust., Identities:66/208(32%), Positives:107/208(51%), Gaps:4/208(1%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A+++IPL P + AFTLP NN P + Y W L QG SP + Q + LQP Sbjct 268 AYFTIPLDPDYAPYTAFTLPRKNNAGPGRRYVWCSLPQGWVLSPLIYQSTLNNILQPFIK 327 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPE-KVQMGKKGEYLGTK 23622 Q +L I +MDDI + + + ++ L F PE K+Q +++G + Sbjct 328 QNSELDIYQYMDDIYIGSNLNKKEHKQKVEELRKLLLWWGFETPEDKLQEEPPYKWMGYE 387 Query 23621 ITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQLTS 23442 + P + S Q+ +L TL++ QKL G INW I P++ ++ L +++GD +L S Sbjct 388 LHPLTWSIQQKQLEIPERPTLNELQKLAGKINWASQTI--PDLSIKELTNMMRGDQKLDS 445 Query 23441 PRALTKDARFSLRKVEKGLE-KAMLRRY 23361 R T +A+ ++K ++ +E +A L Y Sbjct 446 IREWTVEAKREVQKAKEAIETQAQLNYY 473 Range 2: 176 to 249 Score:52.8 bits(125), Expect:4e-26, Method:Compositional matrix adjust., Identities:28/74(38%), Positives:42/74(56%), Gaps:2/74(2%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPS--TSPWNTLIFVIKKKSEKWQL*HDLRAIN 24076 + Q PLS+EK+ A ++V G ++ + +PWNT +F IKKKS KW++ D R +N Sbjct 176 VKQWPLSNEKIEALTDIVERLESEGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRVLN 235 Query 24075 SQMQIMGRIQRGLP 24034 +Q GLP Sbjct 236 KLTDKGAEVQLGLP 249 Range 3: 905 to 1123 Score:71.6 bits(174), Expect:1e-09, Method:Compositional matrix adjust., Identities:65/229(28%), Positives:105/229(45%), Gaps:27/229(11%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMD TH N K V+V SG + A ++ E A + L++ A ++ L+ Sbjct 905 IWQMDCTHF----NGKIIIVAVHVESGFLWAQIIPQETADCTVKALLQLICAHNVTE-LQ 959 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQKQKGGIAYGRT 22033 TDNGP + + M +KH G+P NPQ Q +VE A+ TLK +QK + + Sbjct 960 TDNGPNFKNQKMEGLLNYMGIKHKLGIPGNPQSQALVENANNTLKVWIQK---FLPETTS 1016 Query 22032 PREQLSLALFTRNF-------------LILDAHGCSAADRHAAT-KPMTNADVKWKDVLT 21895 L+LAL NF L + D +A + + + +KD Sbjct 1017 LDNALALALHCLNFKQRGRLGRMAPYELYIQQESLRIQDYFSAIPQKLMMQWLYYKDQKD 1076 Query 21894 GEWCGPDPVILRSRGAVCVFP*NQDNPIW-VPERLTRKLPP--SIPEDE 21757 +W GP V +G+V + +++ I+ VP R R++P ++PE + Sbjct 1077 KKWKGPMRVEYWGQGSVLLK--DEEKGIFLVPRRHIRRVPEPCTLPEGD 1123 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18042.4 Length: 1464 Range 1: 726 to 903 Score:99.8 bits(247), Expect:4e-26, Method:Compositional matrix adjust., Identities:73/185(39%), Positives:106/185(57%), Gaps:13/185(7%) Query 23978 AFYSIPLAPQDSVQF-AFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIR 23802 A++SIPL +D Q+ AFTLPS+NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 726 AYFSIPLH-EDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFR 784 Query 23801 DQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEY 23634 P + +I +MDDIL+ A D + LE + KVV K L N F P EK Q ++ Sbjct 785 KANPDVILIQYMDDILI-ASDRTGLE--HDKVVLQLKELLNGLGFSTPDEKFQKDPPLQW 841 Query 23633 LGTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGD 23457 +G ++ P QK++L + + T++D QKL+G +NW Q Y P + + L ++KG Sbjct 842 MGYELWPTKWKLQKLQLPQKEIWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIKGK 898 Query 23456 SQLTS 23442 LT Sbjct 899 MTLTE 903 Range 2: 635 to 707 Score:47.8 bits(112), Expect:4e-26, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 635 QWPLTKEKIEALREICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNR 694 Query 24072 QMQIMGRIQRGLP 24034 Q IQ G+P Sbjct 695 VTQDFTEIQLGIP 707 Range 3: 1231 to 1422 Score:61.6 bits(148), Expect:1e-06, Method:Compositional matrix adjust., Identities:54/207(26%), Positives:85/207(41%), Gaps:37/207(17%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMD TH+ K V+V SG I A ++ E R L++ + W + L Sbjct 1231 VWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-HLH 1285 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ----------- 22066 TDNG +T++ + ++ + G+PYNPQ QG+VE + LK + Sbjct 1286 TDNGSNFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIET 1345 Query 22065 -----------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTNAD 21919 K++GGI TP E+L + T + S N Sbjct 1346 IVLMAVHCMNFKRRGGIG-DMTPAERLINMITTEQEIQFLQRKNSN---------FKNFQ 1395 Query 21918 VKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV V Sbjct 1396 VYYREGRDQLWKGPGELLWKGDGAVIV 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24107.3 Length: 1462 Range 1: 725 to 901 Score:100 bits(248), Expect:4e-26, Method:Compositional matrix adjust., Identities:74/184(40%), Positives:105/184(57%), Gaps:13/184(7%) Query 23978 AFYSIPLAPQDSVQF-AFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIR 23802 A++SIPL +D Q+ AFTLPS+NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 725 AYFSIPLH-EDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFR 783 Query 23801 DQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEY 23634 + II +MDDIL+ A D + LE + KVV K L NN F P EK Q + Sbjct 784 KANSDVIIIQYMDDILI-ASDRTDLE--HDKVVLQLKELLNNLGFSTPDEKFQKDPPYRW 840 Query 23633 LGTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGD 23457 +G ++ P QKI+L + + T++D QKL+G +NW Q Y P + + L +++G Sbjct 841 MGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGK 897 Query 23456 SQLT 23445 LT Sbjct 898 MTLT 901 Range 2: 634 to 706 Score:47.4 bits(111), Expect:4e-26, Method:Compositional matrix adjust., Identities:27/73(37%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F I+KK + KW++ D R +N Sbjct 634 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKKDKNKWRMLIDFRELNK 693 Query 24072 QMQIMGRIQRGLP 24034 Q IQ G+P Sbjct 694 VTQDFTEIQLGIP 706 Range 3: 1230 to 1420 Score:63.5 bits(153), Expect:3e-07, Method:Compositional matrix adjust., Identities:55/206(27%), Positives:85/206(41%), Gaps:37/206(17%) Query 22389 WQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLKT 22210 WQMD TH+ K V+V SG I A ++ E R L++ + W + L T Sbjct 1230 WQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-HLHT 1284 Query 22209 DNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ------------ 22066 DNG +T++ + ++ T G+PYNPQ QG+VE + LK + Sbjct 1285 DNGANFTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETI 1344 Query 22065 ----------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTNADV 21916 K++GGI TP E+L + T + A + N V Sbjct 1345 VLMAVHCMNFKRRGGIG-DMTPSERLINMITTEQEIQF---------LQAKNSKLKNFRV 1394 Query 21915 KWKDVLTGEWCGPDPVILRSRGAVCV 21838 +++ W GP ++ + GAV V Sbjct 1395 YFREGRDQLWKGPGELLWKGDGAVIV 1420 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12451.3 Length: 1462 Range 1: 724 to 895 Score:99.0 bits(245), Expect:8e-26, Method:Compositional matrix adjust., Identities:71/179(40%), Positives:105/179(58%), Gaps:13/179(7%) Query 23978 AFYSIPLAPQDSVQF-AFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIR 23802 A++SIPL +D Q+ AFTLPS+NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 724 AYFSIPLY-EDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFR 782 Query 23801 DQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEY 23634 P + I+ +MDDIL+ A D + LE + KVV K L N F P EK Q ++ Sbjct 783 KANPDVIIVQYMDDILI-ASDRTDLE--HDKVVLQLKELLNGLGFSTPDEKFQKDPPYQW 839 Query 23633 LGTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKG 23460 +G ++ P QKI+L + + T++D QKL+G +NW Q Y P + + L ++++G Sbjct 840 MGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCKLIRG 895 Range 2: 633 to 705 Score:47.4 bits(111), Expect:8e-26, Method:Compositional matrix adjust., Identities:27/73(37%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 633 QWPLTREKIEALREICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK 692 Query 24072 QMQIMGRIQRGLP 24034 Q +Q G+P Sbjct 693 VTQDFTEVQLGIP 705 Range 3: 1227 to 1420 Score:63.5 bits(153), Expect:3e-07, Method:Compositional matrix adjust., Identities:55/209(26%), Positives:87/209(41%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1227 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-H 1281 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ + ++ + G+PYNPQ QG+VE + LK ++ Sbjct 1282 LHTDNGANFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQIERIREQANTM 1341 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + A + N Sbjct 1342 ETIVLMAVHCMNFKRRGGIG-DMTPVERLVNMITTEQEIQF---------LQAKNSKLKN 1391 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV V Sbjct 1392 FRVYFREGRNQLWQGPGELLWKGDGAVIV 1420 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03362.3 Length: 1462 Range 1: 682 to 962 Score:97.4 bits(241), Expect:2e-29, Method:Compositional matrix adjust., Identities:87/288(30%), Positives:137/288(47%), Gaps:18/288(6%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 + AF+ IPL Q FAFT+P N P Y W VL QG NSPT+ ++ + LQPI Sbjct 682 RDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPI 741 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKG-EYLG 23628 R FP+ I+ +MDDILL++ L + + L ++ L ++ K Q ++LG Sbjct 742 RQAFPQCTILQYMDDILLASPSHEDLLLLSEATMASLISHGLPVSENKTQQTPGTIKFLG 801 Query 23627 TKITPHSISPQKIELRKDHLK-TLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQ 23451 I+P+ ++ + + L + Q LLG I W+ K QPL+ + + Sbjct 802 QIISPNHLTYDAVPTVPIRSRWALPELQALLGEIQWVS---KGTPTLRQPLHSLYCALQR 858 Query 23450 LTSPRA---LTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLWQ---Q 23289 T PR L SL ++ + L + R + +L I+ T +T V++Q Q Sbjct 859 HTDPRDQIYLNPSQVQSLVQLRQALSQNCRSRLVQTLPLLGAIMLTLTGTTTVVFQSKEQ 918 Query 23288 GPLLWIY---PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKI 23154 PL+W++ PH S + SAV +L K +Q +G+L + I Sbjct 919 WPLVWLHAPLPHTSQCPWGQLLASAV----LLLDKYTLQSYGLLCQTI 962 Range 2: 593 to 668 Score:61.2 bits(147), Expect:2e-29, Method:Compositional matrix adjust., Identities:33/76(43%), Positives:43/76(56%), Gaps:0/76(0%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQL*HDLRAINSQ 24070 I Q PL+ E+L A LV + L+ GHI+P T P N +F +KK + W+ HDLRA NS Sbjct 593 ISQFPLNPERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSL 652 Query 24069 MQIMGRIQRGLPPLSS 24022 + G P LSS Sbjct 653 TIDLSSSSPGPPDLSS 668 Range 3: 1226 to 1440 Score:104 bits(260), Expect:8e-26, Method:Compositional matrix adjust., Identities:71/220(32%), Positives:107/220(48%), Gaps:22/220(10%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQ D+TH L HV VDT SG I AT E + AIS L+ A GK + Sbjct 1226 IWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAHLGKPSYIN 1285 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK---QKGGIAY 22042 TDNGPAY ++ F C ++ ++HTT +PYNP G+VE+++ LK LL K K + Sbjct 1286 TDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKYFTDKPDLPM 1345 Query 22041 GRTPREQLSLALFTRNFL--ILDAHGCSAADRHAA-------TKPMTNADVKW-----KD 21904 LS+AL+T N L + + H H+ T+ ++N W Sbjct 1346 DNA----LSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETRSLSNKQTHWYYFKLPG 1401 Query 21903 VLTGEWCGPDPVILRSRGAVCVFP*NQDNPIWVPERLTRK 21784 + + +W GP + + GA + P + + W+P RL ++ Sbjct 1402 LNSRQWKGPQEALQEAAGAALI-PVSASSAQWIPWRLLKR 1440 Range 4: 1091 to 1215 Score:42.0 bits(97), Expect:8e-26, Method:Compositional matrix adjust., Identities:42/140(30%), Positives:63/140(45%), Gaps:18/140(12%) Query 22816 FNLISDSAYVVKTVRSLEIAG-PIRSTTTVCQTLLELQKLIWARKNKFFIQHIRVHTNLP 22640 N+ DS Y+ +R+L + RS+ Q LL +L+ + ++ H+R HTNLP Sbjct 1091 LNIFLDSKYLYHYLRTLALGTFQGRSSQAPFQALLP--RLL--SRKVVYLHHVRSHTNLP 1146 Query 22639 GPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHV--PAFTLQQKFKISRAAARNVVL 22466 P++ NAL D + +P E H H A TLQ + A N++ Sbjct 1147 DPISRLNALTDALLITP-VLQLSPA----ELHSFTHCGQTALTLQ---GATTTEASNILR 1198 Query 22465 SCQNCVQFHPLPQVGINPRG 22406 SC C +P Q+ PRG Sbjct 1199 SCHACRGGNPQHQM---PRG 1215 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14078.3 Length: 1462 Range 1: 682 to 962 Score:101 bits(251), Expect:1e-30, Method:Compositional matrix adjust., Identities:90/290(31%), Positives:141/290(48%), Gaps:22/290(7%) Query 23984 KTAFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPI 23805 K AF+ IPL Q FAFT+P N P Y W VL QG NSPT+ ++ + LQPI Sbjct 682 KDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPI 741 Query 23804 RDQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLENNQLFIAPEKVQMGKKG-EYLG 23628 R FP+ I+ +MDDILL++ + L++ + L ++ L ++ K Q ++LG Sbjct 742 RQAFPQCTILQYMDDILLASPSHADLQLLSEATMASLISHGLPVSENKTQQTPGTIKFLG 801 Query 23627 TKITPHSISPQ---KIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGD 23457 I+P+ ++ K+ +R L + Q LLG I W+ K QPL+ + Sbjct 802 QIISPNHLTYDAVPKVPIRSR--WALPELQALLGEIQWVS---KGTPTLRQPLHSLYCAL 856 Query 23456 SQLTSPRA---LTKDARFSLRKVEKGLEKAMLRRYKEKEDVLLCILRTFCQSTGVLW--- 23295 + T PR L SL ++ + L + R + +L I+ T +T V++ Sbjct 857 QRHTDPRDQIYLNPSQVQSLVQLRQALSQNCRSRLVQTLPLLGAIMLTLTGTTTVVFQSK 916 Query 23294 QQGPLLWIY---PHISPNKTLEYYPSAVAQLAMLGVKSCIQHFGILPKKI 23154 QQ PL+W++ PH S + SAV +L K +Q +G+L + I Sbjct 917 QQWPLVWLHAPLPHTSQCPWGQLLASAV----LLLDKYTLQSYGLLCQTI 962 Range 2: 593 to 668 Score:61.2 bits(147), Expect:1e-30, Method:Compositional matrix adjust., Identities:33/76(43%), Positives:43/76(56%), Gaps:0/76(0%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPWNTLIFVIKKKSEKWQL*HDLRAINSQ 24070 I Q PL+ E+L A LV + L+ GHI+P T P N +F +KK + W+ HDLRA NS Sbjct 593 ISQFPLNPERLQALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSL 652 Query 24069 MQIMGRIQRGLPPLSS 24022 + G P LSS Sbjct 653 TIDLSSSSPGPPDLSS 668 Range 3: 1226 to 1440 Score:103 bits(257), Expect:1e-25, Method:Compositional matrix adjust., Identities:71/220(32%), Positives:106/220(48%), Gaps:22/220(10%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQ D+TH L HV VDT SG I AT E + AIS L+ A GK + Sbjct 1226 IWQGDITHFKYKNTLYRLHVWVDTFSGAISATQKRKETSSEAISSLLQAIAYLGKPSYIN 1285 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK---QKGGIAY 22042 TDNGPAY ++ F C ++ ++HTT +PYNP G+VE+++ LK LL K K + Sbjct 1286 TDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKYFTDKPDLPM 1345 Query 22041 GRTPREQLSLALFTRNFL--ILDAHGCSAADRHAA-------TKPMTNADVKW-----KD 21904 LS+AL+T N L + + H H+ T ++N W Sbjct 1346 DNA----LSIALWTINHLNVLTNCHKTRWQLHHSPRLQPIPETHSLSNKQTHWYYFKLPG 1401 Query 21903 VLTGEWCGPDPVILRSRGAVCVFP*NQDNPIWVPERLTRK 21784 + + +W GP + + GA + P + + W+P RL ++ Sbjct 1402 LNSRQWKGPQEALQEAAGAALI-PVSASSAQWIPWRLLKR 1440 Range 4: 1091 to 1208 Score:42.4 bits(98), Expect:1e-25, Method:Compositional matrix adjust., Identities:39/130(30%), Positives:60/130(46%), Gaps:15/130(11%) Query 22816 FNLISDSAYVVKTVRSLEIAG-PIRSTTTVCQTLLELQKLIWARKNKFFIQHIRVHTNLP 22640 N+ DS Y+ +R+L + RS+ Q LL +L+ + ++ H+R HTNLP Sbjct 1091 LNIFLDSKYLYHYLRTLALGTFQGRSSQAPFQALLP--RLL--SRKVVYLHHVRSHTNLP 1146 Query 22639 GPMASNNALVDGSTHREFIFHAAPVDLTREFHQKFHV--PAFTLQQKFKISRAAARNVVL 22466 P++ NAL D + +P DL H H A TLQ + A N++ Sbjct 1147 DPISRLNALTDALLITP-VLQLSPADL----HSFTHCGQTALTLQ---GATTTEASNILR 1198 Query 22465 SCQNCVQFHP 22436 SC C + +P Sbjct 1199 SCHACRKNNP 1208 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05962.3 Length: 1461 Range 1: 723 to 900 Score:97.1 bits(240), Expect:2e-25, Method:Compositional matrix adjust., Identities:71/184(39%), Positives:100/184(54%), Gaps:11/184(5%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL AFTLPS+NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 723 AYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILEPFRK 782 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEYL 23631 + II +MDDIL+ A D + LE + KVV K L N F P EK Q ++ Sbjct 783 ANEDVIIIQYMDDILI-ASDRTDLE--HDKVVLQLKELLNGLGFSTPDEKFQKDPPYRWM 839 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDS 23454 G ++ P QKI+L + + T++D QKL+G +NW Q Y P + + L +++G Sbjct 840 GYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGKM 896 Query 23453 QLTS 23442 LT Sbjct 897 TLTE 900 Range 2: 630 to 704 Score:48.1 bits(113), Expect:2e-25, Method:Compositional matrix adjust., Identities:28/75(37%), Positives:43/75(57%), Gaps:3/75(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 + Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R + Sbjct 630 LKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFREL 689 Query 24078 NSQMQIMGRIQRGLP 24034 N Q IQ G+P Sbjct 690 NKVTQDFTEIQLGIP 704 Range 3: 1226 to 1419 Score:62.4 bits(150), Expect:6e-07, Method:Compositional matrix adjust., Identities:55/209(26%), Positives:86/209(41%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1226 LGTWQMDCTHLEG----KVIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-H 1280 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ + ++ T G+PYNPQ QG+VE + LK + Sbjct 1281 LHTDNGANFTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANTV 1340 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E++ + T + A + N Sbjct 1341 ETIVLMAVHCMNFKRRGGIG-DMTPAERIINMITTEQEIQF---------LQAKNSKLKN 1390 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV V Sbjct 1391 FRVYFREGRDQLWKGPGELLWKGDGAVIV 1419 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20876.3 Length: 1463 Range 1: 725 to 902 Score:97.1 bits(240), Expect:2e-25, Method:Compositional matrix adjust., Identities:72/187(39%), Positives:105/187(56%), Gaps:17/187(9%) Query 23978 AFYSIPLAPQDSVQF-AFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIR 23802 A++SIPL +D Q+ AFTLPS+NN EP K Y + V QG SP + Q ++Q L+P R Sbjct 725 AYFSIPLH-EDFRQYTAFTLPSINNAEPGKRYIYKVSPQGWKGSPAIFQYTMRQVLEPFR 783 Query 23801 DQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEY 23634 P + +I +MDDIL+ A D + LE + +VV K L N F P EK Q ++ Sbjct 784 KANPDIILIQYMDDILI-ASDRTDLE--HDRVVLQLKELLNGLGFSTPDEKFQKDPPYQW 840 Query 23633 LGTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW---IQPYIKMPNVDLQPLYEILK 23463 +G ++ P Q+I+L + + T++D QKL+G +NW I P IK N L +++ Sbjct 841 MGYELWPTKWKLQRIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTRN-----LCRLIR 895 Query 23462 GDSQLTS 23442 G LT Sbjct 896 GKMTLTE 902 Range 2: 634 to 706 Score:48.1 bits(113), Expect:2e-25, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 634 QWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK 693 Query 24072 QMQIMGRIQRGLP 24034 Q IQ G+P Sbjct 694 VTQDFTEIQLGIP 706 Range 3: 1228 to 1421 Score:61.2 bits(147), Expect:1e-06, Method:Compositional matrix adjust., Identities:55/210(26%), Positives:87/210(41%), Gaps:39/210(18%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1228 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-H 1282 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ + ++ + G+PYNPQ QG+VE + LK + Sbjct 1283 LHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTV 1342 Query 22065 -------------KQKGGIAYGRTPREQL-SLALFTRNFLILDAHGCSAADRHAATKPMT 21928 K++GGI TP E+L ++ + L A + Sbjct 1343 ETIVLMAVHCMNFKRRGGIG-DMTPAERLINMVTAEQEIQFLQAKNSK----------LQ 1391 Query 21927 NADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 N V +++ W GP ++ + GAV V Sbjct 1392 NFRVYFREGRDQLWKGPGELLWKGDGAVIV 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74120.3 Length: 1463 Range 1: 725 to 901 Score:96.3 bits(238), Expect:3e-25, Method:Compositional matrix adjust., Identities:66/181(36%), Positives:100/181(55%), Gaps:7/181(3%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL AFTLP++NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 725 AYFSIPLHEDFRQYTAFTLPTVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRK 784 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKV-VKMLENNQLFIAP-EKVQMGKKGEYLGT 23625 P + ++ +MDDIL+ A D + LE + +K L N F P EK Q +++G Sbjct 785 ANPDVILVQYMDDILI-ASDRTDLEHDRTVLQLKELLNGLGFSTPDEKFQKDPPYKWMGY 843 Query 23624 KITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDSQL 23448 ++ P QKI+L + + T++D QKL+G +NW Q Y P + + L +++G L Sbjct 844 ELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGKMTL 900 Query 23447 T 23445 T Sbjct 901 T 901 Range 2: 632 to 706 Score:48.1 bits(113), Expect:3e-25, Method:Compositional matrix adjust., Identities:28/75(37%), Positives:43/75(57%), Gaps:3/75(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 + Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R + Sbjct 632 VRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFREL 691 Query 24078 NSQMQIMGRIQRGLP 24034 N Q IQ G+P Sbjct 692 NKVTQEFTEIQLGIP 706 Range 3: 1228 to 1421 Score:63.5 bits(153), Expect:3e-07, Method:Compositional matrix adjust., Identities:56/209(27%), Positives:86/209(41%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1228 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT-H 1282 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ ++ + G+PYNPQ QG+VE + LK + Sbjct 1283 LHTDNGANFTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTM 1342 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + HA + N Sbjct 1343 ETIVLMAVHCMNFKRRGGIG-DMTPAERLINMITTEQEIQF---------LHAKNSKLKN 1392 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV V Sbjct 1393 FRVYFREGRDQLWKGPGELLWKGDGAVIV 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04584.3 Length: 1464 Range 1: 726 to 902 Score:95.9 bits(237), Expect:4e-25, Method:Compositional matrix adjust., Identities:70/183(38%), Positives:100/183(54%), Gaps:11/183(6%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL AFTLPS+NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 726 AYFSIPLHEDFRPYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRK 785 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEYL 23631 + II +MDDIL+ A D + LE + +VV K L N F P EK Q ++ Sbjct 786 ANKDVIIIQYMDDILI-ASDRTDLE--HDRVVLQLKELLNGLGFSTPDEKFQKDPPYHWM 842 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDS 23454 G ++ P QKI+L + + T++D QKL+G +NW Q Y P + + L +++G Sbjct 843 GYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLY---PGIKTKHLCRLIRGKM 899 Query 23453 QLT 23445 LT Sbjct 900 TLT 902 Range 2: 635 to 707 Score:48.1 bits(113), Expect:4e-25, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 635 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK 694 Query 24072 QMQIMGRIQRGLP 24034 Q IQ G+P Sbjct 695 VTQDFTEIQLGIP 707 Range 3: 1229 to 1422 Score:61.2 bits(147), Expect:1e-06, Method:Compositional matrix adjust., Identities:54/209(26%), Positives:86/209(41%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1229 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-H 1283 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T++ + ++ + G+PYNPQ QG+VE + LK + Sbjct 1284 LHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTI 1343 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + A + + Sbjct 1344 ETIVLMAIHCMNFKRRGGIG-DMTPSERLINMITTEQEIQF---------LQAKNSKLKD 1393 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV V Sbjct 1394 FRVYFREGRDQLWKGPGELLWKGEGAVLV 1422 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE BEN)] Sequence ID: P18096.4 Length: 1550 Range 1: 725 to 877 Score:95.1 bits(235), Expect:7e-25, Method:Compositional matrix adjust., Identities:64/157(41%), Positives:94/157(59%), Gaps:9/157(5%) Query 23978 AFYSIPLAPQDSVQF-AFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIR 23802 A++SIPL +D Q+ AFTLP++NN EP K Y + VL QG SP + Q ++Q L+P R Sbjct 725 AYFSIPLH-EDFRQYTAFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFR 783 Query 23801 DQFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEY 23634 P + +I +MDDIL+ A D + LE + KVV K L N F P EK Q ++ Sbjct 784 KANPDVILIQYMDDILI-ASDRTGLE--HDKVVLQLKELLNGLGFSTPDEKFQKDPPFQW 840 Query 23633 LGTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW 23523 +G ++ P QK++L + + T++D QKL+G +NW Sbjct 841 MGCELWPTKWKLQKLQLPQKDIWTVNDIQKLVGVLNW 877 Range 2: 634 to 706 Score:48.1 bits(113), Expect:7e-25, Method:Compositional matrix adjust., Identities:28/73(38%), Positives:42/73(57%), Gaps:3/73(4%) Query 24243 QCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAINS 24073 Q PL+ EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R +N Sbjct 634 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNK 693 Query 24072 QMQIMGRIQRGLP 24034 Q IQ G+P Sbjct 694 VTQDFTEIQLGIP 706 Range 3: 1230 to 1421 Score:65.5 bits(158), Expect:8e-08, Method:Compositional matrix adjust., Identities:55/207(27%), Positives:86/207(41%), Gaps:37/207(17%) Query 22392 LWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLK 22213 +WQMD TH+ K V+V SG I A ++ E R L++ + W + L Sbjct 1230 VWQMDYTHLEG----KIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPIT-HLH 1284 Query 22212 TDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ----------- 22066 TDNGP +T++ + ++ + G+PYNPQ QG+VE + LK + Sbjct 1285 TDNGPNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIET 1344 Query 22065 -----------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTNAD 21919 K++GGI TP E+L + T + S N Sbjct 1345 IVLMAVHCMNFKRRGGIG-DMTPAERLINMITTEQEIQFLQRKNSN---------FKNFQ 1394 Query 21918 VKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV V Sbjct 1395 VYYREGRDQLWKGPGELLWKGEGAVIV 1421 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15833.3 Length: 1465 Range 1: 724 to 928 Score:100 bits(248), Expect:8e-25, Method:Compositional matrix adjust., Identities:72/210(34%), Positives:112/210(53%), Gaps:9/210(4%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL P AFTLPS+NN EP K Y + VL QG S ++CQ +++ L P R Sbjct 724 AYFSIPLDPNFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSQSICQYSMRKVLDPFRK 783 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVVKMLE---NNQLFIAP-EKVQMGKKGEYL 23631 + II +MDDIL+ A D S LE + +VV L+ N+ F P EK Q +++ Sbjct 784 ANSDVIIIQYMDDILI-ASDRSDLE--HDRVVSQLKELLNDMGFSTPEEKFQKDPPFKWM 840 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINWIQPYIKMPNVDLQPLYEILKGDSQ 23451 G ++ P QKI+L + + T++ QKL+G +NW P + + + ++++G Sbjct 841 GYELWPKKWKLQKIQLPEKEVWTVNAIQKLVGVLNWAAQL--FPGIKTRHICKLIRGKMT 898 Query 23450 LTSPRALTKDARFSLRKVEKGLEKAMLRRY 23361 LT T+ A L++ + LE+ Y Sbjct 899 LTEEVQWTELAEAELQENKIILEQEQEGSY 928 Range 2: 632 to 696 Score:42.7 bits(99), Expect:8e-25, Method:Compositional matrix adjust., Identities:26/65(40%), Positives:38/65(58%), Gaps:3/65(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 I Q PLS EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ D R + Sbjct 632 IRQWPLSREKILALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFREL 691 Query 24078 NSQMQ 24064 N Q Sbjct 692 NKVTQ 696 Range 3: 1227 to 1420 Score:63.2 bits(152), Expect:4e-07, Method:Compositional matrix adjust., Identities:56/209(27%), Positives:85/209(40%), Gaps:37/209(17%) Query 22398 LRLWQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDS 22219 L WQMD TH+ K V+V SG I A ++ E R L++ + W + Sbjct 1227 LGTWQMDCTHLEG----KIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT-H 1281 Query 22218 LKTDNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQ--------- 22066 L TDNG +T+ S + ++ T G+PYNPQ QG+VE + LK + Sbjct 1282 LHTDNGANFTSPSVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRLRDQAVSI 1341 Query 22065 -------------KQKGGIAYGRTPREQLSLALFTRNFLILDAHGCSAADRHAATKPMTN 21925 K++GGI TP E+L + T + A N Sbjct 1342 ETVVLMATHCMNFKRRGGIG-DMTPAERLVNMITTEQEIQF---------FQAKNLKFQN 1391 Query 21924 ADVKWKDVLTGEWCGPDPVILRSRGAVCV 21838 V +++ W GP ++ + GAV + Sbjct 1392 FQVYYREGRDQLWKGPGELLWKGEGAVII 1420 >RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus - mac K6W] Sequence ID: P05897.2 Length: 1446 Range 1: 710 to 895 Score:99.4 bits(246), Expect:9e-24, Method:Compositional matrix adjust., Identities:71/192(37%), Positives:105/192(54%), Gaps:11/192(5%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A++SIPL + AFTLPS+NN EP K Y + VL QG SP + Q ++ L+P R Sbjct 710 AYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRK 769 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEMAYAKVV---KMLENNQLFIAP-EKVQMGKKGEYL 23631 P + ++ +MDDIL+ A D + LE + +VV K L N+ F P EK Q +++ Sbjct 770 ANPDVTLVQYMDDILI-ASDRTDLE--HDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWM 826 Query 23630 GTKITPHSISPQKIELRKDHLKTLHDFQKLLGSINW-IQPYIKMPNVDLQPLYEILKGDS 23454 G ++ P QKIEL + T++D QKL+G +NW Q Y P + + L +++G Sbjct 827 GYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIY---PGIKTKHLCRLIRGKM 883 Query 23453 QLTSPRALTKDA 23418 LT T+ A Sbjct 884 TLTEAVQWTEMA 895 Range 2: 617 to 685 Score:40.0 bits(92), Expect:9e-24, Method:Compositional matrix adjust., Identities:25/69(36%), Positives:39/69(56%), Gaps:3/69(4%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQ--PSTSPWNTLIFVIKKKSE-KWQL*HDLRAI 24079 + Q PLS EK+ A E+ + + G ++ P T+P+NT F IKKK + KW++ R + Sbjct 617 LKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIHFREL 676 Query 24078 NSQMQIMGR 24052 N Q + R Sbjct 677 NRVTQELYR 685 >RecName: Full=Cytochrome P450 2C50; AltName: Full=CYPIIC50 [Mus musculus] Sequence ID: Q91X77.2 Length: 490 Range 1: 156 to 233 Score:114 bits(284), Expect:2e-23, Method:Compositional matrix adjust., Identities:54/78(69%), Positives:65/78(83%), Gaps:1/78(1%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + ++GSPCDPTFILGCAPCNVICSIIFQ+RFDYKD+DFLNLMEKLNE KI+S+PW QV Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLMEKLNEITKIMSTPWLQV 215 Query 59143 -NKIHLLLETCDYSFSQV 59193 N +LL+ C S ++V Sbjct 216 CNTFPVLLDYCPGSHNKV 233 Range 2: 156 to 213 Score:100 bits(249), Expect:4e-19, Method:Compositional matrix adjust., Identities:44/58(76%), Positives:53/58(91%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++GSPCDPTFILGCAPCNVICSIIFQ+ FDYKD+DFL+LMEKLNE KI+S+PW+ Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLMEKLNEITKIMSTPWL 213 Range 3: 110 to 162 Score:92.8 bits(229), Expect:1e-16, Method:Compositional matrix adjust., Identities:43/53(81%), Positives:47/53(88%), Gaps:0/53(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 +GI+FS GN WK RRF+LTTLRNLGMGKR+IED VQEEARCLVEELRKTNG Sbjct 110 MGIIFSKGNVWKNTRRFSLTTLRNLGMGKRSIEDRVQEEARCLVEELRKTNGS 162 Range 4: 58 to 111 Score:87.8 bits(216), Expect:4e-15, Method:Compositional matrix adjust., Identities:39/54(72%), Positives:44/54(81%), Gaps:0/54(0%) Query 57657 SKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 SKVYGPV+TLY G KPTV+LHGYEAVKEAL+DHGEEFA RG PV +K +G Sbjct 58 SKVYGPVYTLYLGRKPTVVLHGYEAVKEALVDHGEEFAGRGRLPVFDKATNGMG 111 Range 5: 211 to 306 Score:86.7 bits(213), Expect:1e-14, Method:Compositional matrix adjust., Identities:46/99(46%), Positives:62/99(62%), Gaps:13/99(13%) Query 60187 PWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFIDYY 60366 PW + C+ FPVL+DYCPGSH + KN +N+LL+KIKEH+ESLDVT PRDFIDY+ Sbjct 211 PW---LQVCNTFPVLLDYCPGSHNKVFKNYACIKNFLLEKIKEHEESLDVTIPRDFIDYF 267 Query 60367 LIKWKQ----------VKHLYIFIYFIFQVNSQSLKTYL 60453 LI Q ++HL I + +F +++ T L Sbjct 268 LINGGQENGNYPLKNRLEHLAITVTDLFSAGTETTSTTL 306 Range 6: 56 to 111 Score:69.7 bits(169), Expect:2e-09, Method:Compositional matrix adjust., Identities:32/56(57%), Positives:37/56(66%), Gaps:0/56(0%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 SKV G V+TLY G K V+LHGY A KE L+DHGEEF RG PV +K G+G Sbjct 56 NLSKVYGPVYTLYLGRKPTVVLHGYEAVKEALVDHGEEFAGRGRLPVFDKATNGMG 111 Range 7: 223 to 273 Score:63.9 bits(154), Expect:2e-07, Method:Compositional matrix adjust., Identities:29/51(57%), Positives:38/51(74%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 +DYC GS+ + KN +N++L+KIKEH+ESLDVT P DFIDY+LI Q Sbjct 223 LDYCPGSHNKVFKNYACIKNFLLEKIKEHEESLDVTIPRDFIDYFLINGGQ 273 Range 8: 131 to 170 Score:52.0 bits(123), Expect:6e-04, Method:Compositional matrix adjust., Identities:26/40(65%), Positives:30/40(75%), Gaps:3/40(7%) Query 38517 LAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 L G G++SIEDRVQEE +CLVEELRKTNG D TF+ Sbjct 131 LRNLGMGKRSIEDRVQEEARCLVEELRKTNGSPCDPTFIL 170 Range 9: 111 to 152 Score:50.1 bits(118), Expect:0.002, Method:Compositional matrix adjust., Identities:22/42(52%), Positives:28/42(66%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS GN WK RRF+L TL+NLGMGKR++ + + L Sbjct 111 GIIFSKGNVWKNTRRFSLTTLRNLGMGKRSIEDRVQEEARCL 152 Range 10: 428 to 467 Score:49.7 bits(117), Expect:0.003, Method:Compositional matrix adjust., Identities:24/40(60%), Positives:30/40(75%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F TGK IC E LA+M LFLF +IL+NFNLK V+PK++ Sbjct 428 FSTGKRICAGEGLARMELFLFLTSILQNFNLKPLVHPKDI 467 >RecName: Full=Cytochrome P450 2C26; AltName: Full=CYPIIC26; AltName: Full=Cytochrome P450 HSM2 [Mesocricetus auratus] Sequence ID: P33263.1 Length: 490 Range 1: 159 to 233 Score:113 bits(283), Expect:2e-23, Method:Compositional matrix adjust., Identities:53/75(71%), Positives:62/75(82%), Gaps:1/75(1%) Query 58972 SSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV-NK 59148 ++GSPCDPTFILGCAPCNVICSIIFQNRFDYKD+DFL M+KLNEN +ILSSPW QV N Sbjct 159 TNGSPCDPTFILGCAPCNVICSIIFQNRFDYKDKDFLTFMKKLNENARILSSPWFQVCNN 218 Query 59149 IHLLLETCDYSFSQV 59193 LL++ C S ++ Sbjct 219 FPLLIDYCPGSHHRI 233 Range 2: 56 to 111 Score:103 bits(258), Expect:3e-20, Method:Compositional matrix adjust., Identities:48/56(86%), Positives:51/56(91%), Gaps:0/56(0%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 FSKVYGPVFTLY GMKPTV+LHGYEAVKEALIDHGEEFA RGSFPV E++NK LG Sbjct 56 NFSKVYGPVFTLYLGMKPTVVLHGYEAVKEALIDHGEEFAGRGSFPVAERVNKGLG 111 Range 3: 156 to 212 Score:102 bits(254), Expect:1e-19, Method:Compositional matrix adjust., Identities:44/57(77%), Positives:52/57(91%), Gaps:0/57(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPW 39652 + ++GSPCDPTFILGCAPCNVICSIIFQN FDYKD+DFL+ M+KLNEN +I+SSPW Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQNRFDYKDKDFLTFMKKLNENARILSSPW 212 Range 4: 110 to 162 Score:94.7 bits(234), Expect:3e-17, Method:Compositional matrix adjust., Identities:44/53(83%), Positives:49/53(92%), Gaps:0/53(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 LGIVFS+G+RWKE RRF+L TLRNLGMGKR+IED VQEEA+CLVEELRKTNG Sbjct 110 LGIVFSNGSRWKETRRFSLMTLRNLGMGKRSIEDRVQEEAQCLVEELRKTNGS 162 Range 5: 208 to 273 Score:94.4 bits(233), Expect:3e-17, Method:Compositional matrix adjust., Identities:46/69(67%), Positives:55/69(79%), Gaps:3/69(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW F + C+ FP+LIDYCPGSH + KN+ Y R+YL +K+KEHQESLDV NPRDFI Sbjct 208 LSSPW-FQV--CNNFPLLIDYCPGSHHRITKNINYIRSYLSEKMKEHQESLDVANPRDFI 264 Query 60358 DYYLIKWKQ 60384 DYYLIK KQ Sbjct 265 DYYLIKLKQ 273 Range 6: 56 to 111 Score:90.5 bits(223), Expect:6e-16, Method:Compositional matrix adjust., Identities:42/56(75%), Positives:45/56(80%), Gaps:0/56(0%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 FSKV G VFTLY GMK V+LHGY A KE LIDHGEEF RGSFPVAE++NKGLG Sbjct 56 NFSKVYGPVFTLYLGMKPTVVLHGYEAVKEALIDHGEEFAGRGSFPVAERVNKGLG 111 Range 7: 223 to 273 Score:73.6 bits(179), Expect:1e-10, Method:Compositional matrix adjust., Identities:33/51(65%), Positives:41/51(80%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 IDYC GS+ + KN+ + R+Y+ +K+KEHQESLDV NP DFIDYYLIK KQ Sbjct 223 IDYCPGSHHRITKNINYIRSYLSEKMKEHQESLDVANPRDFIDYYLIKLKQ 273 Range 8: 111 to 152 Score:57.8 bits(138), Expect:1e-05, Method:Compositional matrix adjust., Identities:24/42(57%), Positives:32/42(76%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS+G+RWKE RRF+LMTL+NLGMGKR++ + + L Sbjct 111 GIVFSNGSRWKETRRFSLMTLRNLGMGKRSIEDRVQEEAQCL 152 Range 9: 120 to 169 Score:54.3 bits(129), Expect:1e-04, Method:Compositional matrix adjust., Identities:30/53(57%), Positives:35/53(66%), Gaps:6/53(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFL 38624 WK R + +L G G++SIEDRVQEE QCLVEELRKTNG D TF+ Sbjct 120 WKETRRFSLMTLRNL---GMGKRSIEDRVQEEAQCLVEELRKTNGSPCDPTFI 169 Range 10: 428 to 467 Score:49.3 bits(116), Expect:0.004, Method:Compositional matrix adjust., Identities:24/40(60%), Positives:30/40(75%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F TGK +C E LA+M LFLF TIL+NF LKS V+PK++ Sbjct 428 FSTGKRMCAGEGLARMELFLFLTTILQNFKLKSLVHPKDI 467 >RecName: Full=Cytochrome P450 2C39; AltName: Full=CYPIIC39; Flags: Precursor [Mus musculus] Sequence ID: P56656.2 Length: 490 Range 1: 159 to 233 Score:113 bits(283), Expect:2e-23, Method:Compositional matrix adjust., Identities:55/75(73%), Positives:62/75(82%), Gaps:1/75(1%) Query 58972 SSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV-NK 59148 + GSPCDPTFIL CAPCNVICSIIFQ+RFDYKD+DFL LMEKLNEN+KILSSPW QV N Sbjct 159 TKGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMEKLNENVKILSSPWLQVCNN 218 Query 59149 IHLLLETCDYSFSQV 59193 LL++ C S +V Sbjct 219 FPLLIDYCPGSHHKV 233 Range 2: 208 to 277 Score:103 bits(256), Expect:5e-20, Method:Compositional matrix adjust., Identities:49/73(67%), Positives:58/73(79%), Gaps:3/73(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ FP+LIDYCPGSH + KN+ Y R+YLL+KIKEHQESLDVTNPRDFI Sbjct 208 LSSPW---LQVCNNFPLLIDYCPGSHHKVLKNVKYIRSYLLEKIKEHQESLDVTNPRDFI 264 Query 60358 DYYLIKWKQVKHL 60396 DYYLIK KQ H+ Sbjct 265 DYYLIKQKQANHI 277 Range 3: 156 to 213 Score:102 bits(255), Expect:8e-20, Method:Compositional matrix adjust., Identities:45/58(78%), Positives:52/58(89%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + + GSPCDPTFIL CAPCNVICSIIFQ+ FDYKD+DFL LMEKLNEN+KI+SSPW+ Sbjct 156 LRKTKGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMEKLNENVKILSSPWL 213 Range 4: 110 to 162 Score:100 bits(250), Expect:3e-19, Method:Compositional matrix adjust., Identities:48/53(91%), Positives:50/53(94%), Gaps:0/53(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 LGIVFS+GNRWKEIRRFTLTTLRNLGMGKRNIED VQEEA+CLVEELRKT G Sbjct 110 LGIVFSNGNRWKEIRRFTLTTLRNLGMGKRNIEDRVQEEAQCLVEELRKTKGS 162 Range 5: 56 to 111 Score:97.8 bits(242), Expect:3e-18, Method:Compositional matrix adjust., Identities:44/56(79%), Positives:49/56(87%), Gaps:0/56(0%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 FSK YGPVFTLY G +PTV+LHGYEAVKEALIDHGEEF++RGS P+VEKIN LG Sbjct 56 NFSKAYGPVFTLYLGSRPTVVLHGYEAVKEALIDHGEEFSDRGSIPMVEKINNGLG 111 Range 6: 57 to 111 Score:81.3 bits(199), Expect:5e-13, Method:Compositional matrix adjust., Identities:37/55(67%), Positives:41/55(74%), Gaps:0/55(0%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 FSK G VFTLY G + V+LHGY A KE LIDHGEEF+ RGS P+ EKIN GLG Sbjct 57 FSKAYGPVFTLYLGSRPTVVLHGYEAVKEALIDHGEEFSDRGSIPMVEKINNGLG 111 Range 7: 223 to 276 Score:80.9 bits(198), Expect:7e-13, Method:Compositional matrix adjust., Identities:38/54(70%), Positives:44/54(81%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 IDYC GS+ + KNV + R+Y+L+KIKEHQESLDVTNP DFIDYYLIK KQ H Sbjct 223 IDYCPGSHHKVLKNVKYIRSYLLEKIKEHQESLDVTNPRDFIDYYLIKQKQANH 276 Range 8: 111 to 152 Score:59.7 bits(143), Expect:3e-06, Method:Compositional matrix adjust., Identities:26/42(62%), Positives:31/42(73%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS+GNRWKEIRRFTL TL+NLGMGKR + + + L Sbjct 111 GIVFSNGNRWKEIRRFTLTTLRNLGMGKRNIEDRVQEEAQCL 152 Range 9: 120 to 170 Score:51.2 bits(121), Expect:0.001, Method:Compositional matrix adjust., Identities:31/54(57%), Positives:36/54(66%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK + R TL T L G G+++IEDRVQEE QCLVEELRKT G D TF+ Sbjct 120 WKEIRR-FTLTT--LRNLGMGKRNIEDRVQEEAQCLVEELRKTKGSPCDPTFIL 170 Range 10: 428 to 467 Score:48.1 bits(113), Expect:0.009, Method:Compositional matrix adjust., Identities:23/40(58%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK +C E LA+M LFLF TIL+NF LKS V+PK++ Sbjct 428 FSAGKRVCAGEGLARMELFLFLTTILQNFKLKSLVHPKDI 467 >RecName: Full=Cytochrome P450 2C44; AltName: Full=Arachidonic acid epoxygenase; Flags: Precursor [Mus musculus] Sequence ID: E9Q5K4.1 Length: 494 Range 1: 60 to 166 Score:112 bits(281), Expect:4e-23, Method:Compositional matrix adjust., Identities:64/165(39%), Positives:83/165(50%), Gaps:58/165(35%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAF 57830 + +K YGPV+TLYFG PTV+LHGY+ VKEAL++ G+EF RG P++E K G Sbjct 60 KLAKEYGPVYTLYFGSWPTVVLHGYDVVKEALLNQGDEFLGRGPLPIIEDSQKGHG---- 115 Query 57831 L*VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHG 58010 + F+E G Sbjct 116 -----IVFSE-------------------------------------------------G 121 Query 58011 NRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 RWK +RRF+L TL+N GMGKR++E+ VQEEARCLVEEL KT + Sbjct 122 ERWKLLRRFSLMTLKNFGMGKRSLEERVQEEARCLVEELHKTEAQ 166 Range 2: 160 to 219 Score:75.5 bits(184), Expect:4e-11, Method:Compositional matrix adjust., Identities:34/60(57%), Positives:42/60(70%), Gaps:0/60(0%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + + P DPTFIL CAPCNVICSI+F RF Y D+ FLNLM+ LN+N L+S W Q+ Sbjct 160 LHKTEAQPFDPTFILACAPCNVICSILFNERFPYNDKTFLNLMDLLNKNFYQLNSIWIQM 219 Range 3: 160 to 217 Score:68.6 bits(166), Expect:5e-09, Method:Compositional matrix adjust., Identities:31/58(53%), Positives:40/58(68%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + + P DPTFIL CAPCNVICSI+F F Y D+ FL+LM+ LN+N ++S WI Sbjct 160 LHKTEAQPFDPTFILACAPCNVICSILFNERFPYNDKTFLNLMDLLNKNFYQLNSIWI 217 Range 4: 221 to 280 Score:63.9 bits(154), Expect:1e-07, Method:Compositional matrix adjust., Identities:27/60(45%), Positives:42/60(70%), Gaps:0/60(0%) Query 60214 SFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFIDYYLIKWKQVKH 60393 + +P ++ Y PG H +K + +N++L+K+KEHQESLD NPRD+ID +L K ++ KH Sbjct 221 NLWPTIMKYIPGKHREFSKRLGGVKNFILEKVKEHQESLDPANPRDYIDCFLSKIEEEKH 280 Range 5: 60 to 115 Score:56.2 bits(134), Expect:3e-05, Method:Compositional matrix adjust., Identities:26/56(46%), Positives:34/56(60%), Gaps:0/56(0%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 + +K G V+TLYFG V+LHGY KE L++ G+EF RG P+ E KG G Sbjct 60 KLAKEYGPVYTLYFGSWPTVVLHGYDVVKEALLNQGDEFLGRGPLPIIEDSQKGHG 115 Range 6: 227 to 280 Score:54.3 bits(129), Expect:1e-04, Method:Compositional matrix adjust., Identities:24/54(44%), Positives:36/54(66%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 + Y G + +K + +N+IL+K+KEHQESLD NP D+ID +L K ++ KH Sbjct 227 MKYIPGKHREFSKRLGGVKNFILEKVKEHQESLDPANPRDYIDCFLSKIEEEKH 280 Range 7: 115 to 156 Score:53.1 bits(126), Expect:3e-04, Method:Compositional matrix adjust., Identities:23/42(55%), Positives:29/42(69%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS G RWK +RRF+LMTL+N GMGKR+L + + L Sbjct 115 GIVFSEGERWKLLRRFSLMTLKNFGMGKRSLEERVQEEARCL 156 >RecName: Full=Cytochrome P450 2C38; AltName: Full=CYPIIC38; Flags: Precursor [Mus musculus] Sequence ID: P56655.2 Length: 490 Range 1: 156 to 233 Score:112 bits(279), Expect:7e-23, Method:Compositional matrix adjust., Identities:54/78(69%), Positives:63/78(80%), Gaps:1/78(1%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + + GSPCDPTFIL CAPCNVICSIIFQ+RFDYKD+DFL LM+KLNEN+KILSSPW QV Sbjct 156 LRKTKGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMKKLNENVKILSSPWLQV 215 Query 59143 -NKIHLLLETCDYSFSQV 59193 N LL++ C S +V Sbjct 216 CNNFPLLIDYCPGSHHKV 233 Range 2: 156 to 213 Score:101 bits(251), Expect:2e-19, Method:Compositional matrix adjust., Identities:44/58(76%), Positives:52/58(89%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + + GSPCDPTFIL CAPCNVICSIIFQ+ FDYKD+DFL LM+KLNEN+KI+SSPW+ Sbjct 156 LRKTKGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMKKLNENVKILSSPWL 213 Range 3: 208 to 277 Score:100 bits(249), Expect:4e-19, Method:Compositional matrix adjust., Identities:47/73(64%), Positives:57/73(78%), Gaps:3/73(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ FP+LIDYCPGSH + KN Y R+YLL+K+KEHQESLDVTNPRDFI Sbjct 208 LSSPW---LQVCNNFPLLIDYCPGSHHKVLKNFKYIRSYLLEKVKEHQESLDVTNPRDFI 264 Query 60358 DYYLIKWKQVKHL 60396 DY+LIK KQ H+ Sbjct 265 DYFLIKQKQANHI 277 Range 4: 110 to 162 Score:90.5 bits(223), Expect:5e-16, Method:Compositional matrix adjust., Identities:43/53(81%), Positives:46/53(86%), Gaps:0/53(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 LGI FS+GN WKE RRFTL TLRNLGMGKRNIED V+EEA+CLVEELRKT G Sbjct 110 LGITFSNGNSWKETRRFTLMTLRNLGMGKRNIEDRVREEAQCLVEELRKTKGS 162 Range 5: 57 to 111 Score:88.6 bits(218), Expect:2e-15, Method:Compositional matrix adjust., Identities:40/55(73%), Positives:45/55(81%), Gaps:0/55(0%) Query 57654 FSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 FSK YGPVFTLY G +P V+LHGYEAVKEALIDHGEEF+ R + P+ EKIN LG Sbjct 57 FSKTYGPVFTLYLGSRPIVVLHGYEAVKEALIDHGEEFSGRENIPMSEKINNGLG 111 Range 6: 56 to 111 Score:78.6 bits(192), Expect:3e-12, Method:Compositional matrix adjust., Identities:36/56(64%), Positives:42/56(75%), Gaps:0/56(0%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 FSK G VFTLY G + IV+LHGY A KE LIDHGEEF+ R + P++EKIN GLG Sbjct 56 NFSKTYGPVFTLYLGSRPIVVLHGYEAVKEALIDHGEEFSGRENIPMSEKINNGLG 111 Range 7: 223 to 276 Score:77.4 bits(189), Expect:8e-12, Method:Compositional matrix adjust., Identities:35/54(65%), Positives:43/54(79%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 IDYC GS+ + KN + R+Y+L+K+KEHQESLDVTNP DFIDY+LIK KQ H Sbjct 223 IDYCPGSHHKVLKNFKYIRSYLLEKVKEHQESLDVTNPRDFIDYFLIKQKQANH 276 Range 8: 111 to 152 Score:57.4 bits(137), Expect:1e-05, Method:Compositional matrix adjust., Identities:25/42(60%), Positives:30/42(71%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS+GN WKE RRFTLMTL+NLGMGKR + + + L Sbjct 111 GITFSNGNSWKETRRFTLMTLRNLGMGKRNIEDRVREEAQCL 152 Range 9: 124 to 170 Score:48.9 bits(115), Expect:0.006, Method:Compositional matrix adjust., Identities:28/49(57%), Positives:33/49(67%), Gaps:5/49(10%) Query 38490 RNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 R TL T L G G+++IEDRV+EE QCLVEELRKT G D TF+ Sbjct 124 RRFTLMT--LRNLGMGKRNIEDRVREEAQCLVEELRKTKGSPCDPTFIL 170 >RecName: Full=Cytochrome P450 2C54; AltName: Full=CYPIIC54 [Mus musculus] Sequence ID: Q6XVG2.1 Length: 490 Range 1: 156 to 232 Score:109 bits(273), Expect:3e-22, Method:Compositional matrix adjust., Identities:53/77(69%), Positives:63/77(81%), Gaps:1/77(1%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + ++GSPCDPTFILGCAPCNVICSIIFQ+RFDYKD+DFLNL+EKL+E KILS+PW QV Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLLEKLDEISKILSTPWLQV 215 Query 59143 -NKIHLLLETCDYSFSQ 59190 N LL+ C S +Q Sbjct 216 CNTFPALLDYCPGSHNQ 232 Range 2: 156 to 213 Score:96.3 bits(238), Expect:8e-18, Method:Compositional matrix adjust., Identities:42/58(72%), Positives:53/58(91%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++GSPCDPTFILGCAPCNVICSIIFQ+ FDYKD+DFL+L+EKL+E KI+S+PW+ Sbjct 156 LRKTNGSPCDPTFILGCAPCNVICSIIFQDRFDYKDRDFLNLLEKLDEISKILSTPWL 213 Range 3: 208 to 306 Score:89.7 bits(221), Expect:1e-15, Method:Compositional matrix adjust., Identities:48/102(47%), Positives:63/102(61%), Gaps:13/102(12%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L PW + C+ FP L+DYCPGSH KN Y +N+LL+KI+EH+ESLDVT PRDFI Sbjct 208 LSTPW---LQVCNTFPALLDYCPGSHNQFFKNYAYIKNFLLEKIREHKESLDVTIPRDFI 264 Query 60358 DYYLIKWKQ----------VKHLYIFIYFIFQVNSQSLKTYL 60453 DY+LIK Q +HL I + +F ++S+ T L Sbjct 265 DYFLIKGAQEDDNHPLKNNFEHLAITVTDLFIGGTESMSTTL 306 Range 4: 110 to 162 Score:84.7 bits(208), Expect:4e-14, Method:Compositional matrix adjust., Identities:40/53(75%), Positives:45/53(84%), Gaps:0/53(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 +GI FS+G+ WK R F+L TLRNLGMGKR+IED VQEEARCLVEELRKTNG Sbjct 110 MGIGFSNGSVWKNTRHFSLMTLRNLGMGKRSIEDRVQEEARCLVEELRKTNGS 162 Range 5: 58 to 111 Score:82.4 bits(202), Expect:2e-13, Method:Compositional matrix adjust., Identities:36/54(67%), Positives:43/54(79%), Gaps:0/54(0%) Query 57657 SKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 S+VYGPV+TLY G KPTV+LHGYEAVKEAL+DHG+ FA RG PV +K +G Sbjct 58 SRVYGPVYTLYLGRKPTVVLHGYEAVKEALVDHGDVFAGRGRLPVFDKATNGMG 111 Range 6: 223 to 273 Score:65.5 bits(158), Expect:5e-08, Method:Compositional matrix adjust., Identities:29/51(57%), Positives:39/51(76%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 +DYC GS+ KN + +N++L+KI+EH+ESLDVT P DFIDY+LIK Q Sbjct 223 LDYCPGSHNQFFKNYAYIKNFLLEKIREHKESLDVTIPRDFIDYFLIKGAQ 273 Range 7: 56 to 111 Score:65.1 bits(157), Expect:6e-08, Method:Compositional matrix adjust., Identities:29/56(52%), Positives:36/56(64%), Gaps:0/56(0%) Query 38119 QFSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 S+V G V+TLY G K V+LHGY A KE L+DHG+ F RG PV +K G+G Sbjct 56 NLSRVYGPVYTLYLGRKPTVVLHGYEAVKEALVDHGDVFAGRGRLPVFDKATNGMG 111 Range 8: 120 to 170 Score:52.4 bits(124), Expect:5e-04, Method:Compositional matrix adjust., Identities:31/54(57%), Positives:37/54(68%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK R+ +L T L G G++SIEDRVQEE +CLVEELRKTNG D TF+ Sbjct 120 WK-NTRHFSLMT--LRNLGMGKRSIEDRVQEEARCLVEELRKTNGSPCDPTFIL 170 Range 9: 428 to 467 Score:50.1 bits(118), Expect:0.003, Method:Compositional matrix adjust., Identities:24/40(60%), Positives:30/40(75%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F TGK IC E LA+M LFLF +IL+NFNLK V+PK++ Sbjct 428 FSTGKRICAGEGLARMELFLFLTSILQNFNLKPLVHPKDI 467 Range 10: 111 to 152 Score:48.5 bits(114), Expect:0.007, Method:Compositional matrix adjust., Identities:21/42(50%), Positives:29/42(69%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS+G+ WK R F+LMTL+NLGMGKR++ + + L Sbjct 111 GIGFSNGSVWKNTRHFSLMTLRNLGMGKRSIEDRVQEEARCL 152 >RecName: Full=Cytochrome P450 2C25; AltName: Full=CYPIIC25; AltName: Full=Cytochrome P450 HSM1 [Mesocricetus auratus] Sequence ID: Q08078.1 Length: 490 Range 1: 159 to 233 Score:109 bits(273), Expect:4e-22, Method:Compositional matrix adjust., Identities:51/75(68%), Positives:61/75(81%), Gaps:1/75(1%) Query 58972 SSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV-NK 59148 ++GSPCDPTFIL CAPCNVICSIIFQNRFDYKDQDFL M+K+NEN++ILSSPW QV N Sbjct 159 TNGSPCDPTFILSCAPCNVICSIIFQNRFDYKDQDFLTFMKKVNENVRILSSPWLQVCNN 218 Query 59149 IHLLLETCDYSFSQV 59193 L++ C S ++ Sbjct 219 FPSLIDYCPGSHHKI 233 Range 2: 110 to 161 Score:103 bits(258), Expect:3e-20, Method:Compositional matrix adjust., Identities:47/52(90%), Positives:50/52(96%), Gaps:0/52(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 LGIVFS+GNRWKEIRRF+L TLRNLGMGKRNIED VQEEA+CLVEELRKTNG Sbjct 110 LGIVFSNGNRWKEIRRFSLMTLRNLGMGKRNIEDRVQEEAQCLVEELRKTNG 161 Range 3: 156 to 213 Score:102 bits(254), Expect:1e-19, Method:Compositional matrix adjust., Identities:43/58(74%), Positives:53/58(91%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++GSPCDPTFIL CAPCNVICSIIFQN FDYKDQDFL+ M+K+NEN++I+SSPW+ Sbjct 156 LRKTNGSPCDPTFILSCAPCNVICSIIFQNRFDYKDQDFLTFMKKVNENVRILSSPWL 213 Range 4: 56 to 111 Score:100 bits(248), Expect:4e-19, Method:Compositional matrix adjust., Identities:46/56(82%), Positives:49/56(87%), Gaps:0/56(0%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 FSKVYGPVFTLY GMKPTV+LHGYE VKEALIDHGEEFA RG FP+ E+INK LG Sbjct 56 NFSKVYGPVFTLYLGMKPTVVLHGYETVKEALIDHGEEFAGRGDFPMAERINKGLG 111 Range 5: 208 to 276 Score:95.5 bits(236), Expect:2e-17, Method:Compositional matrix adjust., Identities:44/72(61%), Positives:54/72(75%), Gaps:3/72(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ FP LIDYCPGSH + KN+ Y + Y+L+KI+EHQESLD+ NPRDFI Sbjct 208 LSSPW---LQVCNNFPSLIDYCPGSHHKITKNVNYLKKYILEKIEEHQESLDIENPRDFI 264 Query 60358 DYYLIKWKQVKH 60393 DYYLIK KQ H Sbjct 265 DYYLIKLKQANH 276 Range 6: 57 to 111 Score:86.7 bits(213), Expect:1e-14, Method:Compositional matrix adjust., Identities:40/55(73%), Positives:43/55(78%), Gaps:0/55(0%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 FSKV G VFTLY GMK V+LHGY KE LIDHGEEF RG FP+AE+INKGLG Sbjct 57 FSKVYGPVFTLYLGMKPTVVLHGYETVKEALIDHGEEFAGRGDFPMAERINKGLG 111 Range 7: 223 to 276 Score:76.3 bits(186), Expect:2e-11, Method:Compositional matrix adjust., Identities:35/54(65%), Positives:42/54(77%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 IDYC GS+ + KNV + + YIL+KI+EHQESLD+ NP DFIDYYLIK KQ H Sbjct 223 IDYCPGSHHKITKNVNYLKKYILEKIEEHQESLDIENPRDFIDYYLIKLKQANH 276 Range 8: 111 to 152 Score:60.8 bits(146), Expect:1e-06, Method:Compositional matrix adjust., Identities:26/42(62%), Positives:32/42(76%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS+GNRWKEIRRF+LMTL+NLGMGKR + + + L Sbjct 111 GIVFSNGNRWKEIRRFSLMTLRNLGMGKRNIEDRVQEEAQCL 152 Range 9: 120 to 170 Score:53.5 bits(127), Expect:2e-04, Method:Compositional matrix adjust., Identities:29/54(54%), Positives:36/54(66%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK + R + +L G G+++IEDRVQEE QCLVEELRKTNG D TF+ Sbjct 120 WKEIRRFSLMTLRNL---GMGKRNIEDRVQEEAQCLVEELRKTNGSPCDPTFIL 170 Range 10: 428 to 467 Score:49.3 bits(116), Expect:0.005, Method:Compositional matrix adjust., Identities:23/40(58%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK IC E LA+M LFLF TIL+NF LKS ++PK++ Sbjct 428 FSAGKRICAGEGLARMELFLFLTTILQNFKLKSMIHPKDI 467 >RecName: Full=Cytochrome P450 2C27; AltName: Full=CYPIIC27; AltName: Full=Cytochrome P450 HSM3 [Mesocricetus auratus] Sequence ID: P33264.1 Length: 490 Range 1: 159 to 226 Score:108 bits(269), Expect:1e-21, Method:Compositional matrix adjust., Identities:50/68(74%), Positives:57/68(83%), Gaps:1/68(1%) Query 58972 SSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV-NK 59148 ++GSPCDPTFIL CAPCNVICSIIFQNRFDY DQDFL MEK+NEN++ILSSPW QV N Sbjct 159 TNGSPCDPTFILSCAPCNVICSIIFQNRFDYTDQDFLTFMEKVNENVRILSSPWLQVCNN 218 Query 59149 IHLLLETC 59172 L++ C Sbjct 219 FPSLIDYC 226 Range 2: 156 to 213 Score:102 bits(253), Expect:1e-19, Method:Compositional matrix adjust., Identities:43/58(74%), Positives:52/58(89%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + ++GSPCDPTFIL CAPCNVICSIIFQN FDY DQDFL+ MEK+NEN++I+SSPW+ Sbjct 156 LRKTNGSPCDPTFILSCAPCNVICSIIFQNRFDYTDQDFLTFMEKVNENVRILSSPWL 213 Range 3: 56 to 111 Score:96.7 bits(239), Expect:6e-18, Method:Compositional matrix adjust., Identities:45/56(80%), Positives:48/56(85%), Gaps:0/56(0%) Query 57651 QFSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 FSKVYGPVFTLY G KP V+LHGYEAVKEALIDHGEEFA RGSFP+ E+ NK LG Sbjct 56 NFSKVYGPVFTLYLGRKPAVVLHGYEAVKEALIDHGEEFAGRGSFPMAERYNKGLG 111 Range 4: 110 to 161 Score:96.7 bits(239), Expect:7e-18, Method:Compositional matrix adjust., Identities:43/52(83%), Positives:49/52(94%), Gaps:0/52(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 LGIVFS+GNRWK+IRRF+L LR+LGMGKR+IED VQEEA+CLVEELRKTNG Sbjct 110 LGIVFSNGNRWKDIRRFSLMALRSLGMGKRSIEDRVQEEAQCLVEELRKTNG 161 Range 5: 208 to 273 Score:95.9 bits(237), Expect:1e-17, Method:Compositional matrix adjust., Identities:46/69(67%), Positives:54/69(78%), Gaps:3/69(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ FP LIDYCPGSH T+ KN+ Y R+YL +KIKEHQE+LDV NPRDFI Sbjct 208 LSSPW---LQVCNNFPSLIDYCPGSHHTITKNVNYIRSYLSEKIKEHQETLDVANPRDFI 264 Query 60358 DYYLIKWKQ 60384 DYYLIK KQ Sbjct 265 DYYLIKLKQ 273 Range 6: 57 to 111 Score:84.7 bits(208), Expect:5e-14, Method:Compositional matrix adjust., Identities:40/55(73%), Positives:43/55(78%), Gaps:0/55(0%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 FSKV G VFTLY G K V+LHGY A KE LIDHGEEF RGSFP+AE+ NKGLG Sbjct 57 FSKVYGPVFTLYLGRKPAVVLHGYEAVKEALIDHGEEFAGRGSFPMAERYNKGLG 111 Range 7: 223 to 273 Score:76.6 bits(187), Expect:2e-11, Method:Compositional matrix adjust., Identities:35/51(69%), Positives:42/51(82%), Gaps:0/51(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQ 40889 IDYC GS+ T+ KNV + R+Y+ +KIKEHQE+LDV NP DFIDYYLIK KQ Sbjct 223 IDYCPGSHHTITKNVNYIRSYLSEKIKEHQETLDVANPRDFIDYYLIKLKQ 273 Range 8: 111 to 152 Score:56.6 bits(135), Expect:3e-05, Method:Compositional matrix adjust., Identities:23/42(55%), Positives:32/42(76%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 GI FS+GNRWK+IRRF+LM L++LGMGKR++ + + L Sbjct 111 GIVFSNGNRWKDIRRFSLMALRSLGMGKRSIEDRVQEEAQCL 152 Range 9: 120 to 169 Score:55.1 bits(131), Expect:7e-05, Method:Compositional matrix adjust., Identities:30/53(57%), Positives:35/53(66%), Gaps:6/53(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFL 38624 WK + R + L G G++SIEDRVQEE QCLVEELRKTNG D TF+ Sbjct 120 WKDIRRFSLM---ALRSLGMGKRSIEDRVQEEAQCLVEELRKTNGSPCDPTFI 169 Range 10: 428 to 467 Score:49.7 bits(117), Expect:0.004, Method:Compositional matrix adjust., Identities:24/40(60%), Positives:30/40(75%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F TGK +C E LA+M LFLF TIL+NF LKS V+PK++ Sbjct 428 FSTGKRMCAGEGLARMELFLFLTTILQNFKLKSLVHPKDI 467 >RecName: Full=Cytochrome P450 2C29; AltName: Full=Aldehyde oxygenase; AltName: Full=CYPIIC29; AltName: Full=Cytochrome P-450 MUT-2; Flags: Precursor [Mus musculus] Sequence ID: Q64458.2 Length: 490 Range 1: 156 to 233 Score:108 bits(269), Expect:1e-21, Method:Compositional matrix adjust., Identities:51/78(65%), Positives:62/78(79%), Gaps:1/78(1%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + + GSPCDPTFIL CAPCNVICSIIFQNRFDYKD++FL LM+K+NEN+KILSSPW QV Sbjct 156 LRKTKGSPCDPTFILSCAPCNVICSIIFQNRFDYKDKEFLILMDKINENVKILSSPWLQV 215 Query 59143 -NKIHLLLETCDYSFSQV 59193 N L++ C S ++ Sbjct 216 CNSFPSLIDYCPGSHHKI 233 Range 2: 208 to 277 Score:100 bits(250), Expect:2e-19, Method:Compositional matrix adjust., Identities:48/73(66%), Positives:57/73(78%), Gaps:3/73(4%) Query 60178 LINPWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFI 60357 L +PW + C+ FP LIDYCPGSH + KN Y ++YLL+KIKEH+ESLDVTNPRDFI Sbjct 208 LSSPW---LQVCNSFPSLIDYCPGSHHKIVKNFNYLKSYLLEKIKEHKESLDVTNPRDFI 264 Query 60358 DYYLIKWKQVKHL 60396 DYYLIK KQV H+ Sbjct 265 DYYLIKQKQVNHI 277 Range 3: 156 to 213 Score:99.8 bits(247), Expect:6e-19, Method:Compositional matrix adjust., Identities:43/58(74%), Positives:52/58(89%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + + GSPCDPTFIL CAPCNVICSIIFQN FDYKD++FL LM+K+NEN+KI+SSPW+ Sbjct 156 LRKTKGSPCDPTFILSCAPCNVICSIIFQNRFDYKDKEFLILMDKINENVKILSSPWL 213 Range 4: 57 to 161 Score:98.2 bits(243), Expect:2e-18, Method:Compositional matrix adjust., Identities:68/163(42%), Positives:81/163(49%), Gaps:58/163(35%) Query 57654 FSKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLGKYAFL 57833 FSK YGPVFTLY G K +I HG E + Sbjct 57 FSKAYGPVFTLYLGS------------KPTVILHGYEAVKE------------------- 85 Query 57834 *VSWVAFTERKKIDSKGQT*SWGSDYASLGLCLLQCPLSF*DHIVVSIPICLGIVFSHGN 58013 A +R G ++A G P++ + I+ G+VFS+GN Sbjct 86 -----ALIDR------------GEEFAGRG----SFPMA--EKIIKG----FGVVFSNGN 118 Query 58014 RWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNG 58142 RWKE+RRFTL TLRNLGMGKRNIED VQEEA+CLVEELRKT G Sbjct 119 RWKEMRRFTLMTLRNLGMGKRNIEDRVQEEAQCLVEELRKTKG 161 Range 5: 57 to 111 Score:78.2 bits(191), Expect:5e-12, Method:Compositional matrix adjust., Identities:39/55(71%), Positives:40/55(72%), Gaps:0/55(0%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLG 38286 FSK G VFTLY G K VILHGY A KE LID GEEF RGSFP+AEKI KG G Sbjct 57 FSKAYGPVFTLYLGSKPTVILHGYEAVKEALIDRGEEFAGRGSFPMAEKIIKGFG 111 Range 6: 223 to 276 Score:77.8 bits(190), Expect:6e-12, Method:Compositional matrix adjust., Identities:36/54(67%), Positives:44/54(81%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 IDYC GS+ + KN + ++Y+L+KIKEH+ESLDVTNP DFIDYYLIK KQV H Sbjct 223 IDYCPGSHHKIVKNFNYLKSYLLEKIKEHKESLDVTNPRDFIDYYLIKQKQVNH 276 Range 7: 111 to 152 Score:60.5 bits(145), Expect:2e-06, Method:Compositional matrix adjust., Identities:25/42(60%), Positives:32/42(76%), Gaps:0/42(0%) Query 38458 GIAFSHGNRWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 G+ FS+GNRWKE+RRFTLMTL+NLGMGKR + + + L Sbjct 111 GVVFSNGNRWKEMRRFTLMTLRNLGMGKRNIEDRVQEEAQCL 152 Range 8: 120 to 170 Score:53.5 bits(127), Expect:2e-04, Method:Compositional matrix adjust., Identities:32/54(59%), Positives:36/54(66%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK M R TL T L G G+++IEDRVQEE QCLVEELRKT G D TF+ Sbjct 120 WKEMRRF-TLMT--LRNLGMGKRNIEDRVQEEAQCLVEELRKTKGSPCDPTFIL 170 Range 9: 428 to 467 Score:49.7 bits(117), Expect:0.003, Method:Compositional matrix adjust., Identities:25/40(63%), Positives:29/40(72%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F TGK IC E LA+M LFL TIL+NF LKS V+PKE+ Sbjct 428 FSTGKRICAGEGLARMELFLILTTILQNFKLKSLVHPKEI 467 >RecName: Full=Cytochrome P450 2C19; AltName: Full=(R)-limonene 6-monooxygenase; AltName: Full=(S)-limonene 6-monooxygenase; AltName: Full=(S)-limonene 7-monooxygenase; AltName: Full=CYPIIC17; AltName: Full=CYPIIC19; AltName: Full=Cytochrome P450-11A; AltName: Full=Cytochrome P450-254C; AltName: Full=Fenbendazole monooxygenase (4'-hydroxylating); AltName: Full=Mephenytoin 4-hydroxylase [Homo sapiens] Sequence ID: P33261.3 Length: 490 Range 1: 156 to 215 Score:108 bits(269), Expect:1e-21, Method:Compositional matrix adjust., Identities:46/60(77%), Positives:53/60(88%), Gaps:0/60(0%) Query 58963 VSHSSGSPCDPTFILGCAPCNVICSIIFQNRFDYKDQDFLNLMEKLNENMKILSSPWTQV 59142 + + SPCDPTFILGCAPCNVICSIIFQ RFDYKDQ FLNLMEKLNEN++I+S+PW Q+ Sbjct 156 LRKTKASPCDPTFILGCAPCNVICSIIFQKRFDYKDQQFLNLMEKLNENIRIVSTPWIQI 215 Range 2: 156 to 213 Score:103 bits(258), Expect:3e-20, Method:Compositional matrix adjust., Identities:46/58(79%), Positives:51/58(87%), Gaps:0/58(0%) Query 39482 VSHSSGSPCDPTFILGCAPCNVICSIIFQNCFDYKDQDFLSLMEKLNENIKIVSSPWI 39655 + + SPCDPTFILGCAPCNVICSIIFQ FDYKDQ FL+LMEKLNENI+IVS+PWI Sbjct 156 LRKTKASPCDPTFILGCAPCNVICSIIFQKRFDYKDQQFLNLMEKLNENIRIVSTPWI 213 Range 3: 110 to 162 Score:90.5 bits(223), Expect:7e-16, Method:Compositional matrix adjust., Identities:42/53(79%), Positives:45/53(84%), Gaps:0/53(0%) Query 57987 LGIVFSHGNRWKEIRRFTLTTLRNLGMGKRNIEDHVQEEARCLVEELRKTNGK 58145 GIVFS+G RWKEIRRF+L TLRN GMGKR+IED VQEEARCLVEELRKT Sbjct 110 FGIVFSNGKRWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKAS 162 Range 4: 58 to 111 Score:82.4 bits(202), Expect:2e-13, Method:Compositional matrix adjust., Identities:36/54(67%), Positives:44/54(81%), Gaps:0/54(0%) Query 57657 SKVYGPVFTLYFGMKPTVILHGYEAVKEALIDHGEEFAERGSFPVVEKINKDLG 57818 SK+YGPVFTLYFG++ V+LHGYE VKEALID GEEF+ RG FP+ E+ N+ G Sbjct 58 SKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGRGHFPLAERANRGFG 111 Range 5: 57 to 152 Score:80.5 bits(197), Expect:9e-13, Method:Compositional matrix adjust., Identities:51/154(33%), Positives:69/154(44%), Gaps:58/154(37%) Query 38122 FSKVNGSVFTLYFGMKLIVILHGYAATKEGLIDHGEEFTKRGSFPVAEKINKGLGKCTCL 38301 SK+ G VFTLYFG++ +V+LHGY KE LID GEEF+ RG FP+AE+ N+G G Sbjct 57 LSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGRGHFPLAERANRGFG----- 111 Query 38302 *VIWVAFTVRKKIDSKGQT*SWGSDYASLGLCLRQCSPSSWDHIVVSIPICSGIAFSHGN 38481 + F+ K+ W I Sbjct 112 ----IVFSNGKR----------------------------WKEI---------------- 123 Query 38482 RWKEIRRFTLMTLQNLGMGKRALRTVFKRKHSAL 38583 RRF+LMTL+N GMGKR++ + + L Sbjct 124 -----RRFSLMTLRNFGMGKRSIEDRVQEEARCL 152 Range 6: 211 to 276 Score:76.3 bits(186), Expect:2e-11, Method:Compositional matrix adjust., Identities:34/69(49%), Positives:49/69(71%), Gaps:3/69(4%) Query 60187 PWCFSM*FCSFFPVLIDYCPGSHTTLAKNMYYNRNYLLKKIKEHQESLDVTNPRDFIDYY 60366 PW + C+ FP +IDY PG+H L KN+ + + +L+K+KEHQES+D+ NPRDFID + Sbjct 211 PW---IQICNNFPTIIDYFPGTHNKLLKNLAFMESDILEKVKEHQESMDINNPRDFIDCF 267 Query 60367 LIKWKQVKH 60393 LIK ++ K Sbjct 268 LIKMEKEKQ 276 Range 7: 223 to 276 Score:58.5 bits(140), Expect:6e-06, Method:Compositional matrix adjust., Identities:27/54(50%), Positives:38/54(70%), Gaps:0/54(0%) Query 40737 IDYCLGSYMTLAKNVYHTRNYILKKIKEHQESLDVTNPHDFIDYYLIKWKQVKH 40898 IDY G++ L KN+ + IL+K+KEHQES+D+ NP DFID +LIK ++ K Sbjct 223 IDYFPGTHNKLLKNLAFMESDILEKVKEHQESMDINNPRDFIDCFLIKMEKEKQ 276 Range 8: 120 to 170 Score:50.8 bits(120), Expect:0.001, Method:Compositional matrix adjust., Identities:28/54(52%), Positives:34/54(62%), Gaps:6/54(11%) Query 38475 WK*MERNKTLYTHDLAEFGHGEKSIEDRVQEETQCLVEELRKTNG---DHTFLF 38627 WK + R + L FG G++SIEDRVQEE +CLVEELRKT D TF+ Sbjct 120 WKEIRRFSLM---TLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFIL 170 Range 9: 428 to 467 Score:50.1 bits(118), Expect:0.003, Method:Compositional matrix adjust., Identities:25/40(63%), Positives:30/40(75%), Gaps:0/40(0%) Query 1933 FFTGKWICVREDLAQMTLFLFCPTILKNFNLKSQVNPKEL 2052 F GK ICV E LA+M LFLF IL+NFNLKS ++PK+L Sbjct 428 FSAGKRICVGEGLARMELFLFLTFILQNFNLKSLIDPKDL 467 >RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Caprine arthritis encephalitis virus strain Cork] Sequence ID: P33459.1 Length: 1109 Range 1: 260 to 471 Score:77.8 bits(190), Expect:2e-21, Method:Compositional matrix adjust., Identities:72/222(32%), Positives:110/222(49%), Gaps:20/222(9%) Query 23978 AFYSIPLAPQDSVQFAFTLPSMNNEEPDKHYQWVVLSQGMANSPTMCQLYVQQALQPIRD 23799 A+++IPL FTL S NN P K Y W VL QG SP++ Q +Q+ L+ Sbjct 260 AYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQEILEDWIQ 319 Query 23798 QFPKLRIIHFMDDILLSAKDCSTLEM-AYAKVVKMLEN---NQLFIAP-EKVQMGKKGEY 23634 Q P+++ +MDDI + S LE+ + ++VK L N F P EK Q G ++ Sbjct 320 QHPEIQFGIYMDDIYIG----SDLEIKKHREIVKDLANYIAQYGFTLPEEKRQKGYPAKW 375 Query 23633 LGTKITPHSISPQKI---ELRKDHLKTLHDFQKLLGSINWIQPYI--KMPNVDLQPLYEI 23469 LG ++ P + QK EL K + TL+ QKL+G + W Q I +PN+ ++ Sbjct 376 LGFELHPQTWKFQKHTLPELTKGTI-TLNKLQKLVGELVWRQSIIGKSIPNI-----LKL 429 Query 23468 LKGDSQLTSPRALTKDARFSLRKVEKGLEKAMLRRYKEKEDV 23343 ++GD +L S R + + K LE+ Y + +DV Sbjct 430 MEGDRELQSERKIEEVHVKEWEACRKKLEEMEGNYYNKDKDV 471 Range 2: 168 to 241 Score:54.3 bits(129), Expect:2e-21, Method:Compositional matrix adjust., Identities:29/74(39%), Positives:43/74(58%), Gaps:2/74(2%) Query 24249 IPQCPLSSEKLTAAAELVSEQLQLGHIQPSTSPW--NTLIFVIKKKSEKWQL*HDLRAIN 24076 +PQ PL+ EKL E++ + ++ G + + W NT IF IKKKS KW++ D R +N Sbjct 168 VPQWPLTEEKLKGLTEIIDKLVEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELN 227 Query 24075 SQMQIMGRIQRGLP 24034 Q + + Q GLP Sbjct 228 KQTEDLTEAQLGLP 241 Range 3: 892 to 995 Score:82.8 bits(203), Expect:4e-13, Method:Compositional matrix adjust., Identities:46/109(42%), Positives:66/109(60%), Gaps:5/109(4%) Query 22389 WQMDVTHISQFGNLKYAHVSVDTCSGIIHATLMTGEKARNAISHCLEVWAAWGKSDSLKT 22210 WQ+D TH L V V+T SG+I+A + GE + + +A +G +SL++ Sbjct 892 WQVDYTHYENIILL----VWVETNSGLIYAEKVKGESGQEFRIKVMHWYALFG-PESLQS 946 Query 22209 DNGPAYTAKSFWAFCQTMQVKHTTGLPYNPQGQGIVEKAHRTLKELLQK 22063 DNGPA+ A+ Q + VKHTTG+P+NPQ Q IVE+AH+ LK L+K Sbjct 947 DNGPAFAAEPTQLLMQYLGVKHTTGIPWNPQSQAIVERAHQLLKSTLKK 995