RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.008) ....>A:...1_:[..G]G-----C[..C]:..72_:A<.... (0.006) | 2 (0.006) ....>A:...2_:[..C]C-----G[..G]:..71_:A<.... (0.013) | 3 (0.021) ....>A:...3_:[..G]G-----C[..C]:..70_:A<.... (0.018) | 4 (0.018) ....>A:...4_:[..G]G-*---U[..U]:..69_:A<.... (0.015) | 5 (0.018) ....>A:...5_:[..A]A-----U[..U]:..68_:A<.... (0.011) | 6 (0.011) ....>A:...6_:[..U]U-----A[..A]:..67_:A<.... (0.020) | 7 (0.008) ....>A:...7_:[..U]U-----A[..A]:..66_:A<.... (0.016) | 8 (0.020) ....>A:..49_:[5MC]c-----G[..G]:..65_:A<.... (0.017) | 9 (0.024) ....>A:..50_:[..U]U-----A[..A]:..64_:A<.... (0.014) | 10 (0.030) ....>A:..51_:[..G]G-----C[..C]:..63_:A<.... (0.016) | 11 (0.020) ....>A:..52_:[..U]U-----A[..A]:..62_:A<.... (0.016) | 12 (0.027) ....>A:..53_:[..G]G-----C[..C]:..61_:A<.... (0.012) | 13 (0.010) ....>A:..54_:[5MU]t-**--a[1MA]:..58_:A<.... (0.012) | 14 (0.024) ....>A:..55_:[PSU]P-**+-G[..G]:..18_:A<.... (0.028) x 15 (0.015) ....>A:..36_:[..A]A-**--U[..U]:..33_:A<.... (0.014) | 16 (0.008) ....>A:..38_:[..A]A-**--c[OMC]:..32_:A<.... (0.008) | 17 (0.004) ....>A:..39_:[PSU]P-**--A[..A]:..31_:A<.... (0.007) | 18 (0.005) ....>A:..40_:[5MC]c-----G[..G]:..30_:A<.... (0.013) | 19 (0.013) ....>A:..41_:[..U]U-----A[..A]:..29_:A<.... (0.019) | 20 (0.010) ....>A:..42_:[..G]G-----C[..C]:..28_:A<.... (0.007) | 21 (0.025) ....>A:..43_:[..G]G-----C[..C]:..27_:A<.... (0.011) | 22 (0.015) ....>A:..44_:[..A]A-**--g[M2G]:..26_:A<.... (0.013) | 23 (0.018) ....>A:..10_:[2MG]g-----C[..C]:..25_:A<.... (0.011) | 24 (0.005) ....>A:..11_:[..C]C-----G[..G]:..24_:A<.... (0.013) | 25 (0.012) ....>A:..12_:[..U]U-----A[..A]:..23_:A<.... (0.030) | 26 (0.013) ....>A:..13_:[..C]C-----G[..G]:..22_:A<.... (0.017) | 27 (0.025) ....>A:..14_:[..A]A-**--U[..U]:...8_:A<.... (0.016) | 28 (0.021) ....>A:..15_:[..G]G-**+-C[..C]:..48_:A<.... (0.015) | 29 (0.188) ....>A:..16_:[H2U]u-**+-U[..U]:..59_:A<.... (0.029) x 30 (0.026) ....>A:..19_:[..G]G-----C[..C]:..56_:A<.... (0.014) + Note: This structure contains 10[9] non-Watson-Crick base-pairs. **************************************************************************** Detailed H-bond information: atom-name pair and length [ O N] 1 G-----C [3] O6 - N4 2.83 N1 - N3 2.88 N2 - O2 2.84 2 C-----G [3] O2 - N2 3.01 N3 - N1 2.97 N4 - O6 2.86 3 G-----C [3] O6 - N4 2.94 N1 - N3 2.87 N2 - O2 2.76 4 G-*---U [2] O6 - N3 2.91 N1 - O2 2.82 5 A-----U [2] N6 - O4 3.15 N1 - N3 2.88 6 U-----A [2] N3 - N1 2.78 O4 - N6 3.04 7 U-----A [2] N3 - N1 2.73 O4 - N6 2.80 8 c-----G [3] O2 - N2 2.92 N3 - N1 3.04 N4 - O6 3.01 9 U-----A [2] N3 - N1 2.79 O4 - N6 2.81 10 G-----C [3] O6 - N4 2.89 N1 - N3 2.80 N2 - O2 2.74 11 U-----A [2] N3 - N1 2.82 O4 - N6 2.96 12 G-----C [3] O6 - N4 2.95 N1 - N3 2.87 N2 - O2 2.80 13 t-**--a [2] N3 - N7 2.92 O2 - N6 3.25 14 P-**+-G [2] O4 * N1 2.78 O4'* O6 3.61 15 A-**--U [1] OP2- N3 2.80 16 A-**--c [1] N6 - O2 3.01 17 P-**--A [1] O2 * N1 3.18 18 c-----G [3] O2 - N2 2.69 N3 - N1 3.05 N4 - O6 3.36 19 U-----A [2] N3 - N1 2.87 O4 - N6 3.06 20 G-----C [3] O6 - N4 3.15 N1 - N3 2.98 N2 - O2 2.77 21 G-----C [3] O6 - N4 2.92 N1 - N3 2.98 N2 - O2 3.02 22 A-**--g [2] N6 - O6 2.84 N1 - N1 2.87 23 g-----C [3] O6 - N4 2.84 N1 - N3 2.92 N2 - O2 2.92 24 C-----G [3] O2 - N2 2.70 N3 - N1 2.82 N4 - O6 3.00 25 U-----A [2] N3 - N1 2.95 O4 - N6 2.81 26 C-----G [3] O2 - N2 2.73 N3 - N1 2.90 N4 - O6 2.88 27 A-**--U [2] N7 - N3 2.74 N6 - O2 3.00 28 G-**+-C [2] N1 - O2 2.78 N2 - N3 2.83 29 u-**+-U [3] O2'- O4 2.89 O2 - N3 2.61 N3 - O2 2.80 30 G-----C [3] O6 - N4 3.03 N1 - N3 2.93 N2 - O2 2.82