******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= memeout/meme.fasta ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ NP_001253007.1 1.0000 203 NP_001186687.1 1.0000 146 YP_002049390.1 1.0000 180 XP_002898071.1 1.0000 210 XP_002771748.1 1.0000 227 XP_001742699.1 1.0000 197 NP_011110.1 1.0000 211 XP_002677773.1 1.0000 225 NP_390369.1 1.0000 187 ZP_23953076.1 1.0000 190 YP_006776038.1 1.0000 187 YP_006862846.1 1.0000 173 YP_875063.1 1.0000 173 YP_006544936.1 1.0000 203 ZP_21930915.1 1.0000 190 YP_007249493.1 1.0000 186 YP_002248514.1 1.0000 183 YP_004628550.1 1.0000 193 YP_002250946.1 1.0000 181 ZP_21044980.1 1.0000 199 ZP_09717097.1 1.0000 203 YP_003968700.1 1.0000 191 YP_006640390.1 1.0000 210 YP_002729868.1 1.0000 182 ZP_23724314.1 1.0000 205 ZP_19272575.1 1.0000 176 YP_005097506.1 1.0000 179 ZP_23957523.1 1.0000 197 YP_003504642.1 1.0000 157 YP_001998586.1 1.0000 196 ZP_08554557.1 1.0000 192 YP_004203297.1 1.0000 180 YP_001939367.1 1.0000 197 ZP_07685973.1 1.0000 198 YP_004169895.1 1.0000 180 YP_328474.1 1.0000 178 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme memeout/meme.fasta -mod zoops -prior dirichlet -nostatus -protein -oc memeout/ model: mod= zoops nmotifs= 1 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 36 wnsites= 0.8 theta: prob= 1 spmap= pam spfuzz= 120 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 6865 N= 36 sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.066 C 0.013 D 0.062 E 0.071 F 0.042 G 0.068 H 0.021 I 0.072 K 0.065 L 0.105 M 0.023 N 0.023 P 0.057 Q 0.038 R 0.069 S 0.051 T 0.041 V 0.067 W 0.009 Y 0.037 Background letter frequencies (from dataset with add-one prior applied): A 0.066 C 0.013 D 0.062 E 0.071 F 0.042 G 0.068 H 0.021 I 0.072 K 0.065 L 0.105 M 0.023 N 0.024 P 0.056 Q 0.038 R 0.069 S 0.051 T 0.041 V 0.067 W 0.009 Y 0.037 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 29 sites = 35 llr = 1890 E-value = 2.3e-499 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 1111:::2:6::11:::::::1::::::: pos.-specific C ::::::::::::::1:::::::::::::: probability D :7:::::::::9:1:::::::::::a::: matrix E :1::::::::::1:::::::::::::::: F 1:::1:::::9::::1:::1:::31::52 G :::::::6:3::::82::a:a3a:::::: H :::::::::::::1:1:::1::::::::: I 3:1431::1::::::::3::::::::::: K ::::::::::::221::::::5::::2:: L 3:5131:13:::1:1::6:::::::::28 M :::1:1:11:::::::::::::::::::: N ::::::::::::11:2::::::::::::: P ::::::a:::::::::::::::::::::: Q :::::::::::::2::::::::::::::: R ::::::::::::32:1a::2:1::::6:: S ::::::::::::::::::::::::::::: T :::::::::::::1::::::::::::1:: V 1:2326::5:::11:::1::::::::::: W :::::::::::::::::::::::1::::: Y ::::::::::::1::2:::5:::79::2: bits 6.8 6.1 5.4 4.8 * Relative 4.1 * * * * * ** Entropy 3.4 * ** * * * **** (77.9 bits) 2.7 * ** *** * * *** **** * 2.0 *** ******* * ************* 1.4 ************ **************** 0.7 ***************************** 0.0 ----------------------------- Multilevel IDLILVPGVAFDRxGYRLGYGKGYYDRFL consensus L VVI ALG I R G F KL sequence V -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- YP_002250946.1 111 2.58e-29 QPEKSTIVKH FDLIIVPGIAFDKRGYRIGYGKGYYDKFL NKMKETIKIG ZP_23724314.1 129 3.87e-29 LKEKRVPIDR IDLILVPGVAFDRQGGRIGHGKGYYDKLL AGARTDTLRV YP_004203297.1 110 7.16e-28 PTTQAVDPQV LDLVVVPGLAFDEEGYRLGHGKGYYDRFL ATVRAEKLGV YP_006862846.1 102 9.98e-28 EPLPYGPVDR MDLLVVPGIAFDRKGYRLGYGKGYYDKFL AKRKVVFSIG ZP_21930915.1 119 2.60e-27 RSQKRVPPEE IDLVLLPGLAFDRKGGRIGYGKGYFDRFL DRLNDRAGRI NP_001253007.1 129 4.78e-27 VREEALSTGG LDLIFMPGLGFDKHGNRLGRGKGYYDTYL KRCLQHQEVK ZP_23953076.1 116 8.62e-27 NKQNVADVNT IDLVLLPGIAFDKRGNRIGHGAGYYDRLL GKYLHAKRAG YP_003968700.1 118 1.15e-26 EEKSKAAAEE LDLVVVPGVGFDINGYRVGYGGGFYDKFF DGIDKEVSKV XP_001742699.1 120 1.32e-26 AETAALAHEG LDVILVPGMAFDKAGRRLGRGKGYYDRYF ARCAQFATAH ZP_21044980.1 126 2.01e-26 PTAPLISPAL VDLILVPAVACDVQGYRLGYGGGFYDRLL SQPLWRGKPT NP_001186687.1 72 2.31e-26 VREEALSTGG LDLIFMPGLGFDKHGNRLGRGKGYYDAYL KRCLQHQEVK NP_390369.1 116 3.03e-26 EKTKEVNPSQ IDLMIVPGVCFDVNGFRVGFGGGYYDRYL SEYEGKTVSL YP_002729868.1 109 5.14e-26 PEGEAFPVED IDIVVVPAVAYDLRGHRLGYGKGYYDRLL KRIKGLKVGL YP_003504642.1 85 6.66e-26 EPVECTDFKH IDIAVVPGVAFDRALHRIGYGKGYYDRLL GAVRFGIIAG ZP_19272575.1 114 8.59e-26 VGAPFTTYEQ IEVVVVPGVSFDANGNRLGRGRGYYDRFL LQVPQAYKLG YP_006544936.1 128 8.59e-26 GHELPARPED VQVVIIPMVAFDAKGNRLGYGAGYYDRFL CRYPHPIKIG YP_001939367.1 122 9.74e-26 LGCVEASIQD IDLILIPGVGFDRQGHRLGRGLGFYDRCL SLLSPRACRI YP_001998586.1 117 9.74e-26 VPLELTDERC FDAVIVPLVGFDRQGGRIGFGKGWYDRFF EELSTRGISP ZP_09717097.1 128 1.10e-25 AGKIHTPGEK AALMVVPGMAFDKQGNRMGHGKGYYDKFF AKLDGLGVPY XP_002898071.1 130 2.03e-25 PRDDAVQGDD LELVLLPGVAFDRRGGRVGHGKGYYDSFL RRLTEHYDAI ZP_07685973.1 118 2.29e-25 RRIIPALPGD WDLTFVPLLGFDRQGYRIGYGKGYYDQLL GAATTYAVGL YP_002248514.1 113 2.29e-25 KNGLKAFIEE IDVIAVPGIAFDYKCFRIGYGGGYYDRVL ENKKGVAVGL XP_002771748.1 142 2.90e-25 VNAMDCRPPA LNVILVPGLGFDNHCRRLGRGKGFYDRYL SRFSAKTGSM ZP_08554557.1 120 3.67e-25 YGCELCDKET IDLIIMPGLAFDAKGGRVGYGGGFYDHFI NSMETSVRKL YP_007249493.1 116 1.25e-24 GSEIPARGED VDTIILPMLGFDRTGARIGYGAGYYDRFL EKFPSLRKIG YP_004169895.1 108 1.90e-24 ADAPRVDRAR VDAVLLPALAFDEVGFRLGYGGGFYDRLL AGWAVPTVGV YP_005097506.1 109 1.11e-23 EPEGTEYTEY IDIYIVPGVAFDLDLYRLGYGGGFFDRYF SVHKKTQLIG YP_004628550.1 119 2.50e-23 FENPELKPEN FEIIFVPGVAFDLKKGRIGYGGGFYDKIL KKTKAFKIGV ZP_23957523.1 121 3.23e-23 DIRFLKPVRE LDVICTPLVGFDSVGHRLGMGGGYYDRTL SRWFSTGEGA YP_875063.1 104 4.92e-23 PRNDCEECID PDVIIVPAVGTARDGSRLGYGRGYYDRFL AGLDIPSIVP YP_006640390.1 125 8.01e-23 PRRGTEALGL ADLVICPALAVDRRGMRLGRGAGWYDRAL EYKRPDAPAL YP_328474.1 114 1.38e-22 IEGEEIEAQQ IAAALIPAIVFDQNKFRLGYGGGYYDRFL SKYPYIWTIG XP_002677773.1 127 3.34e-22 NLLDSLNGDS KLLVIVPGLAFDYSNRRLGRGKGHYDTFF EKLDDLQGRI YP_002049390.1 108 3.59e-22 IYQSRLHPNQ VGLLLAPALAFDNRGIRLGYGGGYYDRLR SDPLWRGIIA YP_006776038.1 116 4.43e-22 PKDDCPVNNN LDVILVPTVAISPTGVRLGYGHGFYDKFL AKNKTATISL -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YP_002250946.1 2.6e-29 110_[1]_42 ZP_23724314.1 3.9e-29 128_[1]_48 YP_004203297.1 7.2e-28 109_[1]_42 YP_006862846.1 1e-27 101_[1]_43 ZP_21930915.1 2.6e-27 118_[1]_43 NP_001253007.1 4.8e-27 128_[1]_46 ZP_23953076.1 8.6e-27 115_[1]_46 YP_003968700.1 1.1e-26 117_[1]_45 XP_001742699.1 1.3e-26 119_[1]_49 ZP_21044980.1 2e-26 125_[1]_45 NP_001186687.1 2.3e-26 71_[1]_46 NP_390369.1 3e-26 115_[1]_43 YP_002729868.1 5.1e-26 108_[1]_45 YP_003504642.1 6.7e-26 84_[1]_44 ZP_19272575.1 8.6e-26 113_[1]_34 YP_006544936.1 8.6e-26 127_[1]_47 YP_001939367.1 9.7e-26 121_[1]_47 YP_001998586.1 9.7e-26 116_[1]_51 ZP_09717097.1 1.1e-25 127_[1]_47 XP_002898071.1 2e-25 129_[1]_52 ZP_07685973.1 2.3e-25 117_[1]_52 YP_002248514.1 2.3e-25 112_[1]_42 XP_002771748.1 2.9e-25 141_[1]_57 ZP_08554557.1 3.7e-25 119_[1]_44 YP_007249493.1 1.2e-24 115_[1]_42 YP_004169895.1 1.9e-24 107_[1]_44 YP_005097506.1 1.1e-23 108_[1]_42 YP_004628550.1 2.5e-23 118_[1]_46 ZP_23957523.1 3.2e-23 120_[1]_48 YP_875063.1 4.9e-23 103_[1]_41 YP_006640390.1 8e-23 124_[1]_57 YP_328474.1 1.4e-22 113_[1]_36 XP_002677773.1 3.3e-22 126_[1]_70 YP_002049390.1 3.6e-22 107_[1]_44 YP_006776038.1 4.4e-22 115_[1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=29 seqs=35 YP_002250946.1 ( 111) FDLIIVPGIAFDKRGYRIGYGKGYYDKFL 1 ZP_23724314.1 ( 129) IDLILVPGVAFDRQGGRIGHGKGYYDKLL 1 YP_004203297.1 ( 110) LDLVVVPGLAFDEEGYRLGHGKGYYDRFL 1 YP_006862846.1 ( 102) MDLLVVPGIAFDRKGYRLGYGKGYYDKFL 1 ZP_21930915.1 ( 119) IDLVLLPGLAFDRKGGRIGYGKGYFDRFL 1 NP_001253007.1 ( 129) LDLIFMPGLGFDKHGNRLGRGKGYYDTYL 1 ZP_23953076.1 ( 116) IDLVLLPGIAFDKRGNRIGHGAGYYDRLL 1 YP_003968700.1 ( 118) LDLVVVPGVGFDINGYRVGYGGGFYDKFF 1 XP_001742699.1 ( 120) LDVILVPGMAFDKAGRRLGRGKGYYDRYF 1 ZP_21044980.1 ( 126) VDLILVPAVACDVQGYRLGYGGGFYDRLL 1 NP_001186687.1 ( 72) LDLIFMPGLGFDKHGNRLGRGKGYYDAYL 1 NP_390369.1 ( 116) IDLMIVPGVCFDVNGFRVGFGGGYYDRYL 1 YP_002729868.1 ( 109) IDIVVVPAVAYDLRGHRLGYGKGYYDRLL 1 YP_003504642.1 ( 85) IDIAVVPGVAFDRALHRIGYGKGYYDRLL 1 ZP_19272575.1 ( 114) IEVVVVPGVSFDANGNRLGRGRGYYDRFL 1 YP_006544936.1 ( 128) VQVVIIPMVAFDAKGNRLGYGAGYYDRFL 1 YP_001939367.1 ( 122) IDLILIPGVGFDRQGHRLGRGLGFYDRCL 1 YP_001998586.1 ( 117) FDAVIVPLVGFDRQGGRIGFGKGWYDRFF 1 ZP_09717097.1 ( 128) AALMVVPGMAFDKQGNRMGHGKGYYDKFF 1 XP_002898071.1 ( 130) LELVLLPGVAFDRRGGRVGHGKGYYDSFL 1 ZP_07685973.1 ( 118) WDLTFVPLLGFDRQGYRIGYGKGYYDQLL 1 YP_002248514.1 ( 113) IDVIAVPGIAFDYKCFRIGYGGGYYDRVL 1 XP_002771748.1 ( 142) LNVILVPGLGFDNHCRRLGRGKGFYDRYL 1 ZP_08554557.1 ( 120) IDLIIMPGLAFDAKGGRVGYGGGFYDHFI 1 YP_007249493.1 ( 116) VDTIILPMLGFDRTGARIGYGAGYYDRFL 1 YP_004169895.1 ( 108) VDAVLLPALAFDEVGFRLGYGGGFYDRLL 1 YP_005097506.1 ( 109) IDIYIVPGVAFDLDLYRLGYGGGFFDRYF 1 YP_004628550.1 ( 119) FEIIFVPGVAFDLKKGRIGYGGGFYDKIL 1 ZP_23957523.1 ( 121) LDVICTPLVGFDSVGHRLGMGGGYYDRTL 1 YP_875063.1 ( 104) PDVIIVPAVGTARDGSRLGYGRGYYDRFL 1 YP_006640390.1 ( 125) ADLVICPALAVDRRGMRLGRGAGWYDRAL 1 YP_328474.1 ( 114) IAAALIPAIVFDQNKFRLGYGGGYYDRFL 1 XP_002677773.1 ( 127) KLLVIVPGLAFDYSNRRLGRGKGHYDTFF 1 YP_002049390.1 ( 108) VGLLLAPALAFDNRGIRLGYGGGYYDRLR 1 YP_006776038.1 ( 116) LDVILVPTVAISPTGVRLGYGHGFYDKFL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 29 n= 5857 bayes= 9.16293 E= 2.3e-499 -21 -1177 -1177 -1177 103 -1177 -1177 224 -118 130 33 -1177 -98 -1177 -1177 -1177 -1177 109 167 -1177 -21 -1177 357 27 -1177 -124 -1177 -1177 -1177 -187 -1177 28 -1177 -43 -1177 -1177 -1177 -1177 -1177 -1177 38 -1177 -1177 -1177 -1177 -1177 -1177 66 -1177 237 -1177 -1177 -1177 -1177 -1177 -1177 -52 177 -1177 -1177 -21 -1177 -1177 -1177 -1177 -1177 -1177 257 -1177 -87 133 -1177 -1177 -1177 -1177 -1177 -52 236 -1177 -39 -121 114 -1177 -1177 145 -1177 -1177 198 -1177 171 -1177 -1177 -1177 -1177 -1177 -1177 -1177 158 -1177 -1177 -121 114 -1177 -1177 -1177 -1177 -1177 24 -1177 45 192 -1177 -1177 -1177 -1177 -1177 -52 316 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 415 -1177 -1177 -1177 -1177 -1177 -1177 -1177 160 -1177 -1177 -1177 -1177 322 -1177 -1177 -1177 -29 133 -1177 -1177 -1177 -1177 -1177 -52 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 98 -1177 171 133 -1177 -1177 -1177 -1177 -1177 -1177 277 -1177 -1177 325 114 -1177 -1177 -1177 208 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -84 -1177 -123 -1177 -1177 -1177 114 -1177 -1177 436 -1177 -1177 -134 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -52 -123 -1177 -39 -121 -1177 392 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -84 -1177 -1177 -1177 -1177 38 -1177 -1177 -32 -1177 -1177 -1177 -134 140 -29 -1177 128 -98 -43 220 -84 -1177 -23 -1177 61 -21 -1177 -13 -132 -1177 -1177 202 -1177 140 -1177 -1177 228 -1177 215 132 -84 48 -23 -1177 -1177 -1177 214 -1177 -1177 -1177 357 -1177 -1177 -18 -87 -1177 28 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -121 -1177 -1177 -1177 145 134 244 -134 -1177 -1177 33 286 -1177 -1177 32 -84 -1177 -123 -1177 242 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 387 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 198 -1177 245 33 -1177 -1177 -1177 -1177 -1177 -1177 77 -1177 -1177 -1177 -1177 -1177 -1177 -1177 389 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 45 -1177 276 -1177 -1177 -1177 33 -1177 -1177 -1177 174 -1177 -1177 -1177 -1177 386 -1177 -1177 -1177 -1177 -1177 389 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 79 -1177 -1177 -1177 -1177 222 44 -1177 282 -187 -1177 -1177 -1177 -1177 -26 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 389 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 262 -1177 44 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 267 414 -1177 -1177 -1177 -1177 45 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 466 -1177 -1177 400 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -1177 -121 -1177 -1177 -1177 -1177 -1177 44 -1177 162 -1177 -1177 -1177 -1177 -43 320 -84 48 -1177 -1177 -1177 -121 114 -1177 -1177 345 -1177 -1177 -134 -1177 113 -1177 -1177 -1177 -1177 -1177 -1177 -52 -123 -1177 220 -1177 -1177 -1177 -1177 203 -1177 -1177 -134 -1177 288 -1177 -1177 -1177 -1177 -126 -1177 -1177 -1177 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 29 nsites= 35 E= 2.3e-499 0.057143 0.000000 0.000000 0.000000 0.085714 0.000000 0.000000 0.342857 0.028571 0.257143 0.028571 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.142857 0.028571 0.000000 0.057143 0.000000 0.742857 0.085714 0.000000 0.028571 0.000000 0.000000 0.000000 0.028571 0.000000 0.028571 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.085714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.114286 0.000000 0.542857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.228571 0.000000 0.000000 0.057143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.057143 0.057143 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.342857 0.000000 0.028571 0.028571 0.028571 0.000000 0.000000 0.114286 0.000000 0.000000 0.285714 0.000000 0.342857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.028571 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.085714 0.000000 0.142857 0.085714 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.628571 0.000000 0.000000 0.000000 0.085714 0.057143 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.342857 0.057143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.457143 0.000000 0.000000 0.628571 0.028571 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.028571 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.857143 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.028571 0.000000 0.028571 0.028571 0.000000 0.942857 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.085714 0.000000 0.000000 0.057143 0.000000 0.000000 0.000000 0.028571 0.171429 0.085714 0.000000 0.057143 0.028571 0.028571 0.314286 0.028571 0.000000 0.057143 0.000000 0.057143 0.057143 0.000000 0.057143 0.028571 0.000000 0.000000 0.085714 0.000000 0.171429 0.000000 0.000000 0.114286 0.000000 0.171429 0.171429 0.028571 0.057143 0.057143 0.000000 0.000000 0.000000 0.057143 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.057143 0.057143 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.114286 0.171429 0.114286 0.028571 0.000000 0.000000 0.028571 0.171429 0.000000 0.000000 0.085714 0.028571 0.000000 0.028571 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.571429 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.114286 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.057143 0.000000 0.142857 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.228571 0.000000 0.000000 0.000000 0.000000 0.542857 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.114286 0.000000 0.000000 0.000000 0.000000 0.314286 0.028571 0.000000 0.457143 0.028571 0.000000 0.000000 0.000000 0.000000 0.057143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.257143 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.057143 0.657143 0.000000 0.000000 0.000000 0.000000 0.057143 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.942857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.028571 0.628571 0.028571 0.057143 0.000000 0.000000 0.000000 0.028571 0.028571 0.000000 0.000000 0.457143 0.000000 0.000000 0.028571 0.000000 0.228571 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.028571 0.000000 0.171429 0.000000 0.000000 0.000000 0.000000 0.171429 0.000000 0.000000 0.028571 0.000000 0.771429 0.000000 0.000000 0.000000 0.000000 0.028571 0.000000 0.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [IL]D[LV][IV][LIV]VP[GA][VL][AG]FDRxGYR[LI]G[YR]G[KG]G[YF]YD[RK][FL]L -------------------------------------------------------------------------------- Time 6.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- NP_001253007.1 8.37e-25 128_[1(4.78e-27)]_46 NP_001186687.1 2.72e-24 71_[1(2.31e-26)]_46 YP_002049390.1 5.46e-20 107_[1(3.59e-22)]_44 XP_002898071.1 3.70e-23 129_[1(2.03e-25)]_52 XP_002771748.1 5.78e-23 141_[1(2.90e-25)]_57 XP_001742699.1 2.24e-24 119_[1(1.32e-26)]_49 NP_011110.1 3.00e-05 132_[1(1.64e-07)]_50 XP_002677773.1 6.59e-20 126_[1(3.34e-22)]_70 NP_390369.1 4.81e-24 115_[1(3.03e-26)]_43 ZP_23953076.1 1.40e-24 115_[1(8.62e-27)]_46 YP_006776038.1 7.04e-20 115_[1(4.43e-22)]_43 YP_006862846.1 1.45e-25 101_[1(9.98e-28)]_43 YP_875063.1 7.13e-21 103_[1(4.92e-23)]_41 YP_006544936.1 1.50e-23 127_[1(8.59e-26)]_47 ZP_21930915.1 4.21e-25 118_[1(2.60e-27)]_43 YP_007249493.1 1.97e-22 115_[1(1.25e-24)]_42 YP_002248514.1 3.55e-23 112_[1(2.29e-25)]_42 YP_004628550.1 4.12e-21 118_[1(2.50e-23)]_46 YP_002250946.1 3.95e-27 110_[1(2.58e-29)]_42 ZP_21044980.1 3.44e-24 125_[1(2.01e-26)]_45 ZP_09717097.1 1.93e-23 127_[1(1.10e-25)]_47 YP_003968700.1 1.87e-24 117_[1(1.15e-26)]_45 YP_006640390.1 1.46e-20 124_[1(8.01e-23)]_57 YP_002729868.1 7.92e-24 108_[1(5.14e-26)]_45 ZP_23724314.1 6.84e-27 128_[1(3.87e-29)]_48 ZP_19272575.1 1.27e-23 113_[1(8.59e-26)]_34 YP_005097506.1 1.68e-21 108_[1(1.11e-23)]_42 ZP_23957523.1 5.46e-21 120_[1(3.23e-23)]_48 YP_003504642.1 8.59e-24 84_[1(6.66e-26)]_44 YP_001998586.1 1.64e-23 116_[1(9.74e-26)]_51 ZP_08554557.1 6.01e-23 119_[1(3.67e-25)]_44 YP_004203297.1 1.09e-25 109_[1(7.16e-28)]_42 YP_001939367.1 1.65e-23 121_[1(9.74e-26)]_47 ZP_07685973.1 3.90e-23 117_[1(2.29e-25)]_52 YP_004169895.1 2.89e-22 107_[1(1.90e-24)]_44 YP_328474.1 2.07e-20 113_[1(1.38e-22)]_36 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 1 reached. ******************************************************************************** CPU: kodomo.fbb.msu.ru ********************************************************************************