RID: AZTSDA49013 Job Title:sp|Q8QL53|1-561 Program: BLASTP Query: sp|Q8QL53|1-561 ID: lcl|Query_79280(amino acid) Length: 561 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 1176 1176 100% 0.0 100.00 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 1096 1096 99% 0.0 95.37 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 466 466 90% 3e-145 47.64 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 464 464 84% 2e-144 50.63 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 462 462 84% 5e-144 50.42 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 451 451 91% 5e-140 45.74 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 448 448 95% 6e-139 45.81 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 447 447 83% 9e-139 50.21 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 447 447 95% 1e-138 45.62 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 446 446 86% 4e-138 46.93 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 444 444 95% 1e-137 45.44 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 443 443 83% 2e-137 50.00 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 441 441 83% 3e-136 48.20 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 438 438 96% 1e-135 43.57 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 436 436 96% 7e-135 43.38 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 436 436 96% 1e-134 43.38 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 435 435 96% 2e-134 43.57 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 432 432 96% 2e-133 43.38 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 429 429 93% 2e-132 44.30 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 427 427 93% 1e-131 44.11 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 418 418 86% 1e-128 46.07 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 416 416 86% 7e-128 45.66 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 414 414 88% 5e-127 45.00 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 411 411 86% 4e-126 45.45 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 409 409 83% 3e-125 46.50 2494 Q4QXJ8.3 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1 to 561 Score:1176 bits(3043), Expect:0.0, Method:Compositional matrix adjust., Identities:561/561(100%), Positives:561/561(100%), Gaps:0/561(0%) Query 1 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK Sbjct 1 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 Query 61 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK 120 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK Sbjct 61 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK 120 Query 121 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA Sbjct 121 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 Query 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW Sbjct 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 Query 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG Sbjct 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 Query 301 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM Sbjct 301 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 Query 361 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM 420 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM Sbjct 361 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM 420 Query 421 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLN 480 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLN Sbjct 421 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLN 480 Query 481 LPLKQLLLNTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ 540 LPLKQLLLNTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ Sbjct 481 LPLKQLLLNTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ 540 Query 541 DDEEEVDDGMSNVDLGEEDGV 561 DDEEEVDDGMSNVDLGEEDGV Sbjct 541 DDEEEVDDGMSNVDLGEEDGV 561 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1 to 561 Score:1096 bits(2835), Expect:0.0, Method:Compositional matrix adjust., Identities:535/561(95%), Positives:547/561(97%), Gaps:1/561(0%) Query 1 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 MM NLTANPSAG TVTV+LPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK Sbjct 1 MMQNLTANPSAGATVTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 Query 61 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK 120 WIERDI GRQVIVADIGSAPARR+GAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVE+ Sbjct 61 WIERDIGGRQVIVADIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVER 120 Query 121 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 GDGHLV+++ITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA Sbjct 121 GDGHLVNEKITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 Query 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW Sbjct 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 Query 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG Sbjct 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 Query 301 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 YVVKKITICEGIVG PA EELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM Sbjct 301 YVVKKITICEGIVGIPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 Query 361 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM 420 TAMTA+PVKY D VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADE RRDM Sbjct 361 TAMTANPVKYSDAVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDM 420 Query 421 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLN 480 EDEQD+YG+TSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRA+LSATYLN Sbjct 421 EDEQDLYGITSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRAALSATYLN 480 Query 481 LPLKQLLLNTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ 540 LPLKQLLLNTLKRAIKP DQA+ADETEA AHDAAEVHELTEEE RQQAANPSYIADVLGQ Sbjct 481 LPLKQLLLNTLKRAIKPMDQAIADETEALAHDAAEVHELTEEERRQQAANPSYIADVLGQ 540 Query 541 -DDEEEVDDGMSNVDLGEEDG 560 DDEEE DGMS+VDLGEEDG Sbjct 541 DDDEEEAGDGMSDVDLGEEDG 561 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 2 to 494 Score:466 bits(1199), Expect:3e-145, Method:Compositional matrix adjust., Identities:242/508(48%), Positives:324/508(63%), Gaps:15/508(2%) Query 11 AGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQ 70 A V +D+ + Q ++ FP FE+ A + NDHA ARAFSHLATK IE + Q Sbjct 2 AKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKDQ 61 Query 71 VIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRI 130 +I+ DIGSAPARR+ + YH VCP KC EDPER+ YARKL+ KG ++++ Sbjct 62 IIL-DIGSAPARRLYSEHK--YHCVCPMKCTEDPERMLGYARKLIAGSAKGK----AEKL 114 Query 131 TDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVY 190 DL+DVL PD +ET S+CL+ D SC+ + D+AVYQDVYA+DAP+T+Y QA KG R Y Sbjct 115 RDLRDVLATPD--IETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAY 172 Query 191 WIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLV 250 WIGF+ F DA+AG++PLY NW+D VL ++N+ LC +SE K R R K L Sbjct 173 WIGFDTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLK 232 Query 251 PSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICE 310 S + +SVGST Y E R L+SWHLPSTFH + +TCRCDT+VSC GYV+KKIT+C Sbjct 233 QSDRVMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCP 292 Query 311 GIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKY 370 G+ G+P A ++H++G VV K +DTI E+VSF V TY+P +CDQMT + A V Sbjct 293 GVTGKPIG--YAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTA 350 Query 371 PDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVT 430 D KLLVGLNQRIVVNG T RN N+M N L+P+ A+AL WA EA++DMEDE+ + Sbjct 351 DDAQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQ 410 Query 431 SVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNT 490 T +C C A+ + ++H Y+RP S + VP +FT SL + +++ L+Q L Sbjct 411 RTLTCLC-CWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSLWSAGMSISLRQKLKMM 469 Query 491 LKRAIKPGDQALADETEARAHDAAEVHE 518 L+ A +P +A TE +AA V + Sbjct 470 LQ-ARQPTQ--IAAVTEELIQEAAAVEQ 494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 472 Score:464 bits(1193), Expect:2e-144, Method:Compositional matrix adjust., Identities:242/478(51%), Positives:315/478(65%), Gaps:11/478(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 VTVD+ AD P L + AFP FEV + + NDHA ARAFSHLATK IE+++ V + Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPT-GVTIL 61 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 D+GSAPARR+ + + TYH +CP K AEDPERLA+YARKL +A VS +ITDL+ Sbjct 62 DVGSAPARRLMS--DHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQ 119 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 DV+ PD LE+ + CL+ D +C+ +A++AVYQDVYAV AP+++Y QA KG R YWIGF Sbjct 120 DVMATPD--LESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGF 177 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +A+AG++P Y NW+D VL A+N+ LC +GLSE R K L PS Sbjct 178 DTTPFMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDR 237 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R L+SWHLPS FH N +TCRCDTVVSC GYVVKKITI GI G Sbjct 238 VMFSVGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYG 297 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + + A ++H +G +V K +DT+ E+VSFPV TY+PA ICDQMT + A V D Sbjct 298 KTV--DYAVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQ 355 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA EAR DMEDE+ + G T Sbjct 356 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPL-GTRERTL 414 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQ---LLLN 489 C A+ + HT Y+RP+ + + VP+ F + SL ++ L++ ++Q LLL+ Sbjct 415 TCCCLWAFKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLS 472 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 472 Score:462 bits(1190), Expect:5e-144, Method:Compositional matrix adjust., Identities:241/478(50%), Positives:315/478(65%), Gaps:11/478(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 VTVD+ AD P L + AFP FEV + + NDHA ARAFSHLATK IE+++ V + Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPT-GVTIL 61 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 D+GSAPARR+ + + TYH +CP K AEDPERLA+YARKL +A VS +ITDL+ Sbjct 62 DVGSAPARRLMS--DHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQ 119 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 DV+ PD LE+ + CL+ D +C+ +A++AVYQDVYAV AP+++Y QA KG R YWIGF Sbjct 120 DVMATPD--LESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGF 177 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +A+AG++P Y NW+D VL A+N+ LC +GLSE R K L PS Sbjct 178 DTTPFMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDR 237 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R L+SWHLPS FH N +TCRCDTVVSC GYVVKKITI GI G Sbjct 238 VMFSVGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYG 297 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + + A ++H +G ++ K +DT+ E+VSFPV TY+PA ICDQMT + A V D Sbjct 298 KTVD--YAVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQ 355 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA EAR DMEDE+ + G T Sbjct 356 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPL-GTRERTL 414 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQ---LLLN 489 C A+ + HT Y+RP+ + + VP+ F + SL ++ L++ ++Q LLL+ Sbjct 415 TCCCLWAFKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSLWSSSLSMGIRQRIKLLLS 472 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 508 Score:451 bits(1160), Expect:5e-140, Method:Compositional matrix adjust., Identities:236/516(46%), Positives:319/516(61%), Gaps:16/516(3%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ AD P + + AFP FEV + + NDHA ARAFSHLATK IE++ D + ++ Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETD-KDTLIL 63 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP+RR+ + YH VCP + AEDPERL YA+KL A K ++ +ITDL+ Sbjct 64 DIGSAPSRRMMSTHK--YHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQ 121 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD E+ + CL+ DV+C+ A++AVYQDVYAV AP+++Y QA KG R YWIGF Sbjct 122 TVMATPDA--ESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGF 179 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F DA+AG++P Y NW+D VL A+N+ LC + L+E + R K L P Sbjct 180 DTTPFMFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDT 239 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVKKIT+C G+ G Sbjct 240 VMFSVGSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYG 299 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A +YH +G +V K +DT+ E+VSFPV TY+P+ ICDQMT + A V D Sbjct 300 KTVG--YAVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQ 357 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+P+ A A WA E + D++DE+ + GV + Sbjct 358 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPL-GVRERSL 416 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLP----LKQLLLNT 490 C A+ R+ HT Y++P + + VP++F + SL +T L +P +K LL Sbjct 417 TCCCLWAFKTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKK 476 Query 491 LKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQ 526 KR + P + D + AR + E L E R+ Sbjct 477 TKRELIP----VLDASSARDAEQEEKERLEAELTRE 508 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 3 to 531 Score:448 bits(1152), Expect:6e-139, Method:Compositional matrix adjust., Identities:246/537(46%), Positives:329/537(61%), Gaps:10/537(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 +V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 DIG APARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL Sbjct 63 -DIGPAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDL 119 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 + V+ P+ +ET++ CL+ D +CK + D+A+YQDVYAV AP+++Y QA KG RV YWIG Sbjct 120 QAVMAVPN--METSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIG 177 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +AMAG++P Y NW+D VL AKN+ LC + LSE R K L P Sbjct 178 FDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCD 237 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVK++T+ GI Sbjct 238 RVLFSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIY 297 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 G+ + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 298 GKTSG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDA 355 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E R+DMEDE+ + GV T Sbjct 356 QKLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEK-LLGVRERT 414 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKR 493 C A+ K + HT Y+RP S VPA+F + SL ++ L++PL+ + L + Sbjct 415 LTCCCLWAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSK 474 Query 494 AIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIA--DVLGQDDEEEVDD 548 A K + E A + E E E ++A P DV + D E+++D Sbjct 475 APKHEQLPHSGNAEEAAQAEMDAAEEREAELTREAMPPLQATQDDVQVEIDVEQLED 531 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 465 Score:447 bits(1151), Expect:9e-139, Method:Compositional matrix adjust., Identities:236/470(50%), Positives:305/470(64%), Gaps:8/470(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S++I DL+ Sbjct 63 DIGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQ 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD ET + CL+ DVSC+ +AD+A+YQDVYAV AP+++Y QA KG RV YWIGF Sbjct 121 AVMAVPDA--ETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGF 178 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +AMAG++P Y NW+D VL AKN+ LC + L+E R K + P Sbjct 179 DTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDR 238 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R LKSWHLPS FH +TCRCDTVVSC GYVVK+ITI G+ G Sbjct 239 VLFSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYG 298 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 299 KTTG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQ 356 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R+DMEDE+ + G+ T Sbjct 357 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEK-LLGIRERTL 415 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLK 484 C A+ K++ HT Y+RP S VPA+F + SL ++ L++PL+ Sbjct 416 TCCCLWAFKKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSLWSSGLSIPLR 465 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 3 to 531 Score:447 bits(1150), Expect:1e-138, Method:Compositional matrix adjust., Identities:245/537(46%), Positives:329/537(61%), Gaps:10/537(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 +V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 3 SVYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 DIGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL Sbjct 63 -DIGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDL 119 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 + V+ P+ +ET++ CL+ D +CK + D+A+YQDVYAV AP+++Y QA KG RV YWIG Sbjct 120 QAVMAVPN--METSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIG 177 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +AMAG++P Y NW+D VL AKN+ LC + LSE R K L P Sbjct 178 FDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCD 237 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVK++T+ GI Sbjct 238 RVLFSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIY 297 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 G+ + A ++H G ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 298 GKTSG--YAVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDA 355 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E R+DMEDE+ + GV T Sbjct 356 QKLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEK-LLGVRERT 414 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKR 493 C A+ K + HT Y+RP S VPA+F + SL ++ L++PL+ + L + Sbjct 415 LTCCCLWAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSK 474 Query 494 AIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIA--DVLGQDDEEEVDD 548 A K + E A + E E E ++A P D+ + D E+++D Sbjct 475 APKYEQLPHSGNAEEAAQAETDAVEEQEAELTREAMPPLQATQDDIQVEIDVEQLED 531 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 2 to 479 Score:446 bits(1146), Expect:4e-138, Method:Compositional matrix adjust., Identities:229/488(47%), Positives:314/488(64%), Gaps:13/488(2%) Query 13 TTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVI 72 + V VD+ A+ P L + AFP FEV A + NDHA ARAFSHLATK IE++ + + + Sbjct 2 SKVFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETE-KDTL 60 Query 73 VADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITD 132 + DIGSAPARR+ + TYH VCP + AEDPERL YARKL +A + ++ +I D Sbjct 61 ILDIGSAPARRMMSEH--TYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDD 118 Query 133 LKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWI 192 L+ V+ PD E+ + CL+ D +C+ +A++AVYQDVYAV AP+++Y QA KG R YWI Sbjct 119 LQSVMATPDN--ESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWI 176 Query 193 GFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 GF+ F D MAG++P Y NW+D VL A+N+ LC + L+E + R K + PS Sbjct 177 GFDTTPFMFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 +I +SVGST Y+E R LKSWHLPS FH YTCRCDT+VSC GYVVKKIT+ G+ Sbjct 237 DQIMFSVGSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGV 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+ + A ++H +G +V K +DTI E+VSFP+ TY+P+ ICDQMT + A V D Sbjct 297 FGKTSG--YAVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPED 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV ++A WA E R D EDE++M G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNM-GMRER 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLK---QLLLN 489 T C A+ + HT Y++P + + VP++F + SL + L++ ++ +LLL Sbjct 414 TLTCCCLWAFKTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSLWSAGLSIGIRHRIRLLLQ 473 Query 490 TLKRAIKP 497 + R ++P Sbjct 474 S--RRVEP 479 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 3 to 531 Score:444 bits(1143), Expect:1e-137, Method:Compositional matrix adjust., Identities:244/537(45%), Positives:327/537(60%), Gaps:10/537(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 +V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTIL 62 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 IGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL Sbjct 63 G-IGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDL 119 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 + V+ P+ +ET++ CL+ D +CK + D+A+YQDVYAV AP+++Y QA KG V YWIG Sbjct 120 QAVMAVPN--METSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIG 177 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +AMAG++P Y NW+D VL AKN+ LC + LSE R K P Sbjct 178 FDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCD 237 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVK++T+ GI Sbjct 238 RVLFSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIY 297 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 G+ + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 298 GKTSG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDA 355 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E R+DMEDE+ + GV T Sbjct 356 QKLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEK-LLGVRERT 414 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKR 493 C A+ K + HT Y+RP S VPA+F + SL ++ L++PL+ + L + Sbjct 415 LTCCCLWAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSLWSSGLSIPLRTRIKWLLSK 474 Query 494 AIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIA--DVLGQDDEEEVDD 548 A K + E A + E E E ++A P DV + D E+++D Sbjct 475 APKHEQLPHSGNAEEAAQAETDAVEEREAELTREAMPPLQATQDDVQVEIDVEQLED 531 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 465 Score:443 bits(1140), Expect:2e-137, Method:Compositional matrix adjust., Identities:235/470(50%), Positives:304/470(64%), Gaps:8/470(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL+ Sbjct 63 DIGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQ 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PDT ET + CL+ DVSC+ +AD+A+YQDVYAV AP+++Y QA KG R+ YW+GF Sbjct 121 AVMAVPDT--ETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGF 178 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +AMAG++P Y NW+D VL AKN+ LC + L+E R K L P Sbjct 179 DTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDR 238 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R LKSWHLPS FH +TCRCDTVVSC GYVVK+IT+ G+ G Sbjct 239 VLFSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYG 298 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 299 KTTG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQ 356 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N +IPV A+A WA E R+DMEDE+ + GV T Sbjct 357 KLLVGLNQRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEK-LLGVRERTL 415 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLK 484 C A+ K++ HT Y+RP S V A+F + SL ++ L++PL+ Sbjct 416 TCCCLWAFKKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLR 465 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 464 Score:441 bits(1133), Expect:3e-136, Method:Compositional matrix adjust., Identities:227/471(48%), Positives:303/471(64%), Gaps:9/471(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 VTVD+ AD P L + AFP FEV + + NDHA ARAFSHLATK IE+++ + + Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPA-NITIL 61 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 D+GSAPARR+ + + +YH +CP K AEDPERLA+YARKL + + VS +ITDL+ Sbjct 62 DVGSAPARRLMS--DHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQ 119 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 DV+ PD LE+ + CL+ D +C+ +A++AVYQDV AP+++Y QA KG R VYWIGF Sbjct 120 DVMATPD--LESPTFCLHTDETCRTRAEVAVYQDV-XXHAPTSLYHQAMKGVRTVYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F + +AG++P Y NW+D VL A+N+ LC + LSE R K L PS Sbjct 177 DTTPFMFEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDR 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 +SVG T Y+E R LKSWHLPS FH N +TCRCDT+VSC GYVVKKIT+ G G Sbjct 237 XMFSVGXTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A ++H +G ++ K +DT+ E+VSFPV TY+PA ICDQMT + A V D Sbjct 297 KTVG--YAVTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA EA+ DMEDE+ + G T Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPL-GTRERTL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQ 485 C A+ + HT Y+RP + + VP+ F + SL ++ L++ ++Q Sbjct 414 TCCCLWAFKNHKTHTMYKRPDTQTIVKVPSTFDSFVIPSLWSSSLSIGIRQ 464 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 4 to 536 Score:438 bits(1127), Expect:1e-135, Method:Compositional matrix adjust., Identities:237/544(44%), Positives:327/544(60%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE ++D I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP +CAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ +PD LET ++CL+DD SC+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 AVMSDPD--LETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLK 492 + C A+ + + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 +P A++ + A E E+ E E +AA P ADV E +VD + Sbjct 474 EHKEPSPLITAEDVQEAKCAADEAKEVREAE-ELRAALPPLAADVEEPTLEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 4 to 536 Score:436 bits(1122), Expect:7e-135, Method:Compositional matrix adjust., Identities:236/544(43%), Positives:326/544(59%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE ++D I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP +CAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ +PD LET ++CL+DD SC+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 AVMSDPD--LETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLK 492 + C A+ + + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 +P A++ + A E E+ E E +A P ADV E +VD + Sbjct 474 EHKEPSPLITAEDIQEAKCAADEAKEVREAE-ELRAVLPPLAADVEEPTLEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 4 to 536 Score:436 bits(1121), Expect:1e-134, Method:Compositional matrix adjust., Identities:236/544(43%), Positives:326/544(59%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE ++D I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP +CAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ +PD LET ++CL+DD SC+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 AVMSDPD--LETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLK 492 + C A+ + + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 +P A++ + A E E+ E E +AA P AD E +VD + Sbjct 474 EHKEPSPLITAEDIQEAKCAADEAKEVREAE-ELRAALPPLAADFEEPTLEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 4 to 536 Score:435 bits(1118), Expect:2e-134, Method:Compositional matrix adjust., Identities:237/544(44%), Positives:330/544(60%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE +++ I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP KCAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 +V+ +PD LET +ICL+DD +C+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 EVMNDPD--LETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLK 492 + C A+ K + + Y+RP + I V + F + + ++ L + L+ + L+ Sbjct 414 QLVMGCCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIKKLLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 + AD+ + A +AA+ + +E +AA P ADV E +VD + Sbjct 474 EPVDRPPLITADDIQ-EAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 4 to 536 Score:432 bits(1111), Expect:2e-133, Method:Compositional matrix adjust., Identities:236/544(43%), Positives:328/544(60%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE +++ I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP KCAEDP+RL YA KL + + + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 +V+ +PD LET +ICL+DD +C+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 EVMSDPD--LETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT++ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLK 492 + C A+ K + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKLLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 + AD+ + A +AA+ + +E +AA P ADV E +VD + Sbjct 474 EPVDRPPLITADDIQ-EAKNAADEAKEVKEAEELRAALPPLSADVEEPALEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 6 to 518 Score:429 bits(1103), Expect:2e-132, Method:Compositional matrix adjust., Identities:233/526(44%), Positives:318/526(60%), Gaps:17/526(3%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ + T Sbjct 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T L + L+Q LK A Sbjct 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTTSLPMSLRQ----KLKLA 472 Query 495 IKP-GDQALADETEARAHDAAEVHELTEEEGRQQA---ANPSYIAD 536 ++P ++ L +E +A E +EE R + A P +AD Sbjct 473 LQPKKEEKLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 6 to 518 Score:427 bits(1098), Expect:1e-131, Method:Compositional matrix adjust., Identities:232/526(44%), Positives:314/526(59%), Gaps:17/526(3%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTTATIL- 64 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 VL+ PD ET S+C ++DV+C +A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 123 TVLDTPDA--ETPSLCFHNDVTCNTRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 A + + +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 300 ETVG--YAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIV+NG T RN N+M N L+P A+ WA E + D+++E+ + T Sbjct 358 KLLVGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLT 417 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T L + L+Q +K A Sbjct 418 YGCLW-AFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTTSLPMSLRQ----KMKLA 472 Query 495 IKP-GDQALADETEARAHDAAEVHELTEEEGRQQA---ANPSYIAD 536 ++P ++ L E +A E +EE R + A P +AD Sbjct 473 LQPKKEEKLLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 4 to 477 Score:418 bits(1075), Expect:1e-128, Method:Compositional matrix adjust., Identities:223/484(46%), Positives:301/484(62%), Gaps:10/484(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 4 VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R + YH +CP AEDP+RL YA KL R + D ++ + DL Sbjct 63 DIGSAPVRHTHSKHK--YHCICPMISAEDPDRLQRYADKL-RKSDVTD-RFIASKAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD +ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 TVMSTPD--VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAG++P Y+ NW+D +VL A+N+ LC S L E + R K L P+ + Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKITI GI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 KVDN--LASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R D+EDE+D+ GV + Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDL-GVRERSL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 + C A+ + + Y++P + VPA F + ++ LN+ L++ + L+ Sbjct 414 VMGCCWAFKTHKITSIYKKPGTQTIKKVPAVFNSFVIPQFNSYGLNIGLRRRIKMLLEEK 473 Query 495 IKPG 498 KP Sbjct 474 RKPA 477 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 4 to 477 Score:416 bits(1069), Expect:7e-128, Method:Compositional matrix adjust., Identities:221/484(46%), Positives:300/484(61%), Gaps:10/484(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 4 VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R + YH +CP AEDP+RL YA KL R + D ++ + DL Sbjct 63 DIGSAPVRHTHSKHK--YHCICPMISAEDPDRLHRYADKL-RKSDVTD-RFIASKAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD +ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 TVMSTPD--VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAG++P Y+ NW+D +VL A+N+ LC S L E R K L P+ + Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKITI GI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 KVDN--LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E D+EDE+D+ GV + Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDL-GVRERSL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 + C A+ + + Y++P + VPA F + L++ L++ L++ + L+ Sbjct 414 VMGCCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTSYGLDIELRRRIKMLLEEK 473 Query 495 IKPG 498 KP Sbjct 474 KKPA 477 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 5 to 495 Score:414 bits(1063), Expect:5e-127, Method:Compositional matrix adjust., Identities:225/500(45%), Positives:307/500(61%), Gaps:14/500(2%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 TV VD+ P + Q + +FP FE+VA + NDHA ARAFSHLA+K IE +I V + Sbjct 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPT-SVTI 63 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 DIGSAPARR+ + YH VCP + EDP+RL +YA +L + + D++ DL Sbjct 64 LDIGSAPARRMYSEHK--YHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADL 121 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 K VLE+PD ET +IC ++DV C+ A+++V Q+VY ++APSTIY QA KG R +YWIG Sbjct 122 KSVLESPDA--ETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIG 178 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +MAGS+P Y+ NW+D VL A+N+ LC + L E ++ FR K L P Sbjct 179 FDTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGT 238 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 +++SVGST Y E+R L+SWHLPS FH +TCRCDT V+C GYVVKKITI GI Sbjct 239 NVYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGIT 298 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 GR N T+ + +G ++ K +DT+ E+VSFPV TYIP ICDQMT + A ++ D Sbjct 299 GR-VNRYTVTN-NSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDA 356 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P A L WA E + D DE+ + Sbjct 357 QKLLVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKL 416 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQ-----LLL 488 + C+ A+ ++ H+FYR P + + V A+F+ +S+ T L + L+Q L+ Sbjct 417 AFGCLW-AFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTTSLPMSLRQKVKLLLVK 475 Query 489 NTLKRAIKPGDQALADETEA 508 T K + D A+ + EA Sbjct 476 KTNKPVVTITDTAVKNAQEA 495 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 4 to 477 Score:411 bits(1056), Expect:4e-126, Method:Compositional matrix adjust., Identities:220/484(45%), Positives:302/484(62%), Gaps:10/484(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 + VDL AD P + + FP FE+ A + NDHA ARAFSH+ATK IE ++D QVI+ Sbjct 4 IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R A N YH +CP AEDP+RL YA +L ++ + D ++ S + DL Sbjct 63 DIGSAPVRH--AHSNHRYHCICPMISAEDPDRLQRYAERLKKS-DITDKNIAS-KAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 +V+ PD ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 EVMSTPDA--ETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAGS+P Y+ NW+D VL A+N+ L S L E + R K L P+ + Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 I +SVGST Y EDR L+SWHLP+ FH + +T RC T+VSC GYV+KKITI G+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSF V TY+PA +CDQMT + A V D Sbjct 297 KVEN--LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R D++DE+++ GV T Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKEL-GVRERTL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQLLLNTLKRA 494 + C A+ ++ + Y++P + VPA F + L++ L++ ++ L L+ Sbjct 414 TMGCCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPT 473 Query 495 IKPG 498 +KP Sbjct 474 VKPA 477 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 4 to 464 Score:409 bits(1050), Expect:3e-125, Method:Compositional matrix adjust., Identities:219/471(46%), Positives:294/471(62%), Gaps:10/471(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 4 VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R + YH +CP K AEDP+RL YA KL R + D ++ + DL Sbjct 63 DIGSAPVRHTHSKHK--YHCICPMKSAEDPDRLYRYADKL-RKSDVTD-KCIASKAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 TVMSTPDA--ETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAG++P Y+ NW+D +VL A+N+ L S L E S R K L P+ + Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKIT+ GI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 KVDN--LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R D+EDE+ + GV + Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGL-GVRERSL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLNLPLKQ 485 + C A+ + + Y+RP + VPA F + ++ L++ L++ Sbjct 414 VMGCCWAFKTHKITSIYKRPGTQTIKKVPAVFNSFVIPQPTSYGLDIGLRR 464