TBLASTN 2.8.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPS3 PE=1 SV=5

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-287                                                        310     4e-97
  scaffold-44                                                         287     3e-89


> scaffold-287
Length=687983

 Score = 310 bits (793),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 176/207 (85%), Gaps = 2/207 (1%)
 Frame = +3

Query  11      LVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELT  70
                VADGVFYAELNE   RELAE+GY+GVEVRVTP +TE++IRATRT  VLGE GRRI ELT
Sbjct  132573  FVADGVFYAELNELLQRELAEDGYAGVEVRVTPARTEIVIRATRTMKVLGEKGRRIRELT  132752

Query  71      LLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESG  130
               +LVQKRF++A GT+ L+AE+V +RGL A AQ ES+++KLL GL +RRA YGVVR+VMESG
Sbjct  132753  MLVQKRFRFADGTVELFAEKVNNRGLCAAAQCESLRYKLLGGLVLRRACYGVVRFVMESG  132932

Query  131     AKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR  190
               AKG EVVVSGKLRAARAK+MKF DGF+IHSGQP  DFID+ATRHVLMRQGVLGIKVKIM 
Sbjct  132933  AKGVEVVVSGKLRAARAKSMKFIDGFMIHSGQPKRDFIDSATRHVLMRQGVLGIKVKIML  133112

Query  191     D-PAKSRTGPK-ALPDAVTIIEPKEEE  215
               D     + GPK ALPDAVTI+EPK ++
Sbjct  133113  DWDPLGKVGPKHALPDAVTILEPKADD  133193


> scaffold-44
Length=398337

 Score = 287 bits (734),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 151/207 (73%), Positives = 175/207 (85%), Gaps = 2/207 (1%)
 Frame = -3

Query  11      LVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELT  70
                VADGVFYAELNE   RELAE+GY+GVEVRVTP +TE++IRATRT  VLGE GRRI ELT
Sbjct  351241  FVADGVFYAELNELL*RELAEDGYAGVEVRVTPARTEIVIRATRTMKVLGEKGRRIRELT  351062

Query  71      LLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESG  130
               +LV KRF++A GT+ L+AE+V +RGL A AQ ES+++KLL GL +RRA YGVVR+VMESG
Sbjct  351061  MLV*KRFRFADGTVELFAEKVNNRGLCAAAQCESLRYKLLGGLVLRRACYGVVRFVMESG  350882

Query  131     AKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR  190
               AKG EVVVSGKLRAARAK+MKF DGF+IHSGQP  DFID+ATRHVLMRQGVLGIKVKIM 
Sbjct  350881  AKGVEVVVSGKLRAARAKSMKFTDGFMIHSGQPKRDFIDSATRHVLMRQGVLGIKVKIML  350702

Query  191     D-PAKSRTGPK-ALPDAVTIIEPKEEE  215
               D     + GPK ALPDAVTI+EPK ++
Sbjct  350701  DWDPLGKVGPKHALPDAVTILEPKADD  350621



Lambda      K        H        a         alpha
   0.318    0.134    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1132438545


  Database: X5.fasta
    Posted date:  Nov 5, 2021  8:46 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40