RID: 9WJYR97M01N	
Job Title:Polyprotein fragment (HIV-1 integrase)				
Program: BLASTP 
Query: INT_HV1H2 P04585 Gag-Pol polyprotein Integrase fragment (IN) (2.7.7.- {ECO:0000305|PubMed:2349226}) (3.1.-.- {ECO:0000305|PubMed:2349226}) ID: lcl|Query_786398(amino acid) Length: 120
Database: swissprot Non-redundant UniProtKB/SwissProt sequences
	
Sequences producing significant alignments:
                                                                  Scientific      Common                     Max    Total Query   E   Per.   Acc.                        
Description                                                       Name            Name            Taxid      Score  Score cover Value Ident  Len        Accession        
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_HXB2R NA              11706      241    241   100%  8e-74 100.00 1435       P04585.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11686      235    235   100%  6e-72 97.50  1447       P03367.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              362651     234    234   100%  1e-71 96.67  1435       P35963.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              82834      233    233   100%  3e-71 95.83  1435       P0C6F2.1         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11678      233    233   100%  3e-71 95.83  1447       P03366.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11682      232    232   100%  7e-71 95.83  1447       P04587.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11699      232    232   100%  7e-71 95.83  1434       P20892.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11688      232    232   100%  1e-70 95.83  1439       P20875.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_MN    NA              11696      231    231   100%  2e-70 95.83  1441       P05961.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11689      229    229   100%  6e-70 95.83  1435       P04589.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11701      229    229   100%  6e-70 94.17  1436       P05959.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_AR... NA              11685      229    229   100%  9e-70 94.17  1437       P03369.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11698      229    229   100%  1e-69 95.00  1435       P12497.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_90... NA              388826     228    228   100%  2e-69 91.67  1435       O93215.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA              388904     228    228   100%  2e-69 91.67  1432       Q9WC63.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11683      226    226   100%  7e-69 94.17  1436       P12499.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11695      226    226   100%  8e-69 94.17  1432       P18802.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:B_89.6  NA              401671     226    226   100%  8e-69 93.33  1435       Q73368.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:J_SE... NA              388905     226    226   100%  1e-68 91.67  1432       Q9WC54.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA              388815     225    225   100%  2e-68 92.50  1430       Q9QBZ5.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:H_VI991 NA              388888     223    223   100%  2e-67 89.17  1436       Q9Q720.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11703      222    222   100%  3e-67 90.00  1428       P24740.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11697      221    221   100%  8e-67 90.00  1440       P04588.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_92... NA              388812     220    220   100%  1e-66 89.17  1431       O12158.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F2_M... NA              388823     219    219   100%  2e-66 89.17  1434       Q9QBZ1.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_97... NA              388907     219    219   100%  2e-66 88.33  1429       Q9QBZ9.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_9... NA              388814     219    219   100%  3e-66 90.83  1430       O89290.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:C_ET... NA              388796     218    218   100%  9e-66 88.33  1439       Q75002.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:F1_V... NA              388813     217    217   100%  2e-65 86.67  1430       Q9QSR3.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_SE... NA              388824     216    216   100%  2e-65 88.33  1433       O89940.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:K_96... NA              388906     216    216   100%  4e-65 87.50  1430       Q9QBY3.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz MB66     NA              388911     214    214   100%  2e-64 85.83  1438       Q1A267.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 M:G_92... NA              388825     211    211   100%  2e-63 86.67  1435       O41798.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF30   NA              388818     210    210   100%  5e-63 82.50  1449       O91080.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz EK505    NA              388912     206    206   100%  7e-62 80.00  1448       Q1A249.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 N_YBF106  NA              388819     201    201   100%  9e-60 80.00  1449       Q9IDV9.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz GAB1     NA              402771     188    188   100%  1e-55 80.83  1384       P17283.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_ANT70   NA              327105     184    184   100%  4e-54 75.00  1435       Q77373.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-1 O_MVP5180 NA              388816     177    177   100%  9e-52 70.83  1446       Q79666.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11737      172    172   100%  7e-50 66.67  1449       P12502.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11727      172    172   100%  8e-50 65.83  1470       P27973.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11738      171    171   100%  1e-49 65.83  1449       P19505.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... SIVcpz TAN1     NA              388910     170    170   100%  5e-49 66.67  1462       Q8AII1.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              73484      167    167   100%  3e-48 64.17  1463       Q74120.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11732      167    167   100%  5e-48 64.17  1441       P22382.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_UC1     NA              388822     166    166   100%  7e-48 63.33  1471       Q76634.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11720      166    166   100%  9e-48 64.17  1464       P04584.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11715      166    166   100%  1e-47 63.33  1462       P24107.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11713      165    165   100%  2e-47 63.33  1462       P17757.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11714      165    165   100%  3e-47 63.33  1550       P18096.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11719      164    164   100%  3e-47 61.67  1461       P05962.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... HIV-2 B_EHO     NA              388821     164    164   100%  4e-47 61.67  1464       Q89928.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11718      164    164   100%  6e-47 61.67  1462       P12451.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11721      163    163   100%  1e-46 60.83  1463       P20876.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11717      162    162   100%  1e-46 64.17  1464       P18042.4         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11731      162    162   100%  3e-46 64.17  1467       P05895.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11730      162    162   100%  3e-46 62.50  1465       P27980.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11733      160    160   100%  8e-46 60.83  1448       P05896.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Human immuno... NA              11716      159    159   100%  3e-45 62.50  1465       P15833.3         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              31684      157    157   100%  2e-44 61.67  1472       Q02836.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;... Simian immun... NA              11735      124    124   100%  4e-33 53.33  1446       P05897.2         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA              31676      100    100   93%   1e-24 45.54  1124       P31822.1         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA              11674      99.4   99.4  93%   3e-24 46.43  1124       P16088.1         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Feline immun... NA              11675      99.0   99.0  93%   4e-24 45.54  1124       P19028.1         
RecName: Full=Pol polyprotein [Simian immunodeficiency virus...   Simian immun... NA              11728      84.0   84.0  51%   3e-21 64.52  100        P12500.1         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Jembrana dis... NA              36370      79.0   79.0  96%   4e-17 39.32  1432       Q82851.1         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Caprine arth... NA              11661      70.5   70.5  94%   3e-14 35.65  1109       P33459.1         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA              31675      69.7   69.7  91%   7e-14 41.07  1146       P32542.1         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA              11670      69.7   69.7  91%   7e-14 41.07  1146       P11204.1         
RecName: Full=Gag-Pol polyprotein; Contains: RecName:...          Visna/maedi ... NA              36374      69.3   69.3  94%   9e-14 36.52  1506       P35956.2         
RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;... Bovine immun... NA              417296     68.9   68.9  100%  1e-13 37.19  1475       P19560.2         
RecName: Full=Gag-Pol polyprotein; Contains: RecName:...          Visna lentiv... NA              11743      68.9   68.9  94%   1e-13 35.65  1506       P23426.2         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Equine infec... NA              11672      68.6   68.6  91%   2e-13 41.07  1145       P03371.1         
RecName: Full=Gag-Pol polyprotein; Contains: RecName:...          Visna lentiv... NA              11744      67.4   67.4  94%   4e-13 35.65  1506       P23427.2         
RecName: Full=Gag-Pol polyprotein; Contains: RecName:...          Visna lentiv... NA              11742      67.4   67.4  94%   4e-13 35.65  1506       P03370.2         
RecName: Full=Pol polyprotein; Contains: RecName: Full=Proteas... Ovine lentiv... NA              11664      63.2   63.2  94%   1e-11 33.91  1086       P16901.1         
RecName: Full=Pol polyprotein [Simian immunodeficiency virus...   Simian immun... NA              11729      49.7   49.7  30%   8e-08 58.33  100        P12501.1         
RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas...       Pseudomonas ... NA              379731     48.5   48.5  72%   5e-07 33.98  151        A4VLR0.1         
RecName: Full=Ribonuclease H; Short=RNase H [Francisella...       Francisella ... NA              401614     46.6   46.6  100%  3e-06 28.26  152        A0Q6W0.1         
RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas...      Nitrosomonas... NA              335283     46.2   46.2  100%  5e-06 28.28  162        Q0AE34.1         
RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas...      Nitrosomonas... NA              228410     45.8   45.8  74%   6e-06 32.73  161        Q82XV8.1         
RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas...       Pseudomonas ... NA              381754     45.1   45.1  71%   1e-05 30.69  148        A6V705.1         
RecName: Full=Ribonuclease H; Short=RNase H [Francisella...       Francisella ... NA              484022     45.1   45.1  96%   1e-05 29.10  152        B0TZ91.1         
RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas...       Pseudomonas ... NA              220664     44.7   44.7  74%   2e-05 30.48  150        Q4KBI1.1         
RecName: Full=Ribonuclease H; Short=RNase H [Ralstonia...         Ralstonia so... NA              267608     44.7   44.7  96%   2e-05 28.36  151        Q8XZ91.1         
RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas...       Pseudomonas ... NA              557722     44.3   44.3  96%   2e-05 27.21  148        B7VB62.1         
RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas...       Pseudomonas ... NA              399739     44.3   44.3  99%   2e-05 29.93  150        A4XU11.1         
RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus...       Cupriavidus ... NA              266264     43.9   43.9  99%   3e-05 28.47  145        Q1LL89.1         
RecName: Full=Ribonuclease H; Short=RNase H [Alcanivorax...       Alcanivorax ... NA              393595     43.1   43.1  96%   5e-05 27.61  151        Q0VQ76.1         
RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus...       Cupriavidus ... NA              264198     43.1   43.1  96%   5e-05 27.61  145        Q46Z81.1         
RecName: Full=Ribonuclease H; Short=RNase H [Nitrosococcus...     Nitrosococcu... NA              323261     42.4   42.4  96%   1e-04 26.87  147        Q3J7D4.1         
RecName: Full=Ribonuclease H; Short=RNase H [Janthinobacterium... Janthinobact... NA              375286     42.0   42.0  96%   1e-04 29.85  144        A6SXA4.1         
RecName: Full=Ribonuclease H; Short=RNase H [Methylobacillus...   Methylobacil... NA              265072     40.8   40.8  100%  4e-04 28.99  151        Q1H190.1         
RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus necat... Cupriavidus ... NA              381666     40.8   40.8  99%   4e-04 26.28  145        Q0K8W6.1         
RecName: Full=Ribonuclease H; Short=RNase H [Novosphingobium...   Novosphingob... NA              279238     40.8   40.8  94%   4e-04 27.48  143        Q2G9E3.1         
RecName: Full=Ribonuclease H; Short=RNase H [Methylorubrum...     Methylorubru... NA              419610     40.4   40.4  74%   8e-04 29.13  228        A9W185.1         
RecName: Full=Ribonuclease H; Short=RNase H [Bordetella...        Bordetella b... NA              257310     40.0   40.0  96%   8e-04 25.37  155        Q7WCJ8.1         
RecName: Full=Ribonuclease H; Short=RNase H [Bordetella...        Bordetella p... NA              257313     39.7   39.7  96%   0.001 25.37  155        Q7VRX8.1         
RecName: Full=Ribonuclease H; Short=RNase H [Saccharopolyspora... Saccharopoly... NA              405948     39.7   39.7  95%   0.001 29.63  155        A4FMU3.1         
RecName: Full=Ribonuclease H; Short=RNase H [Hydrogenovibrio...   Hydrogenovib... NA              317025     38.5   38.5  69%   0.003 29.59  145        Q31H49.1         

Alignments:
>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_HXB2R]
Sequence ID: P04585.4 Length: 1435 
Range 1: 1028 to 1147

Score:241 bits(614), Expect:8e-74, 
Method:Compositional matrix adjust., 
Identities:120/120(100%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ
Sbjct  1028  YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1088  YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BRU ISOLATE)]
Sequence ID: P03367.3 Length: 1447 
Range 1: 1040 to 1159

Score:235 bits(600), Expect:6e-72, 
Method:Compositional matrix adjust., 
Identities:117/120(98%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAA+RETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1040  YVDGAASRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1099

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1100  YALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1159



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (isolate YU2)]
Sequence ID: P35963.3 Length: 1435 
Range 1: 1028 to 1147

Score:234 bits(597), Expect:1e-71, 
Method:Compositional matrix adjust., 
Identities:116/120(97%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVTN+GRQKVV+LTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ
Sbjct  1028  YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1088  YALGIIQAQPDRSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 lw12.3 isolate]
Sequence ID: P0C6F2.1 Length: 1435 
Range 1: 1028 to 1147

Score:233 bits(595), Expect:3e-71, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:119/120(99%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVTN+GRQKVV LT+TTNQKTELQAIYLALQDSGLEVNIVTDSQ
Sbjct  1028  YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK+L
Sbjct  1088  YALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKIL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 BH10]
Sequence ID: P03366.3 Length: 1447 
Range 1: 1040 to 1159

Score:233 bits(595), Expect:3e-71, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:119/120(99%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVTN+GRQKVV LT+TTNQKTELQAIYLALQDSGLEVNIVTDSQ
Sbjct  1040  YVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQ  1099

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK+L
Sbjct  1100  YALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKIL  1159



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (BH5 ISOLATE)]
Sequence ID: P04587.3 Length: 1447 
Range 1: 1040 to 1159

Score:232 bits(592), Expect:7e-71, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:119/120(99%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAA+RETKLGKAGYVTNRGRQKVVTLT TTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1040  YVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1099

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK+L
Sbjct  1100  YALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKIL  1159



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (OYI ISOLATE)]
Sequence ID: P20892.3 Length: 1434 
Range 1: 1027 to 1146

Score:232 bits(592), Expect:7e-71, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV+LTDTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1027  YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1086

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1087  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1146



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (JRCSF ISOLATE)]
Sequence ID: P20875.3 Length: 1439 
Range 1: 1032 to 1151

Score:232 bits(591), Expect:1e-70, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV+LTDTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1032  YVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1091

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1092  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1151



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_MN]
Sequence ID: P05961.3 Length: 1441 
Range 1: 1034 to 1153

Score:231 bits(589), Expect:2e-70, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:119/120(99%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETK GKAGYVTNRGRQKVV+LTDTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1034  YVDGAANRETKKGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1093

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1094  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1153



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (ELI ISOLATE)]
Sequence ID: P04589.3 Length: 1435 
Range 1: 1028 to 1147

Score:229 bits(585), Expect:6e-70, 
Method:Compositional matrix adjust., 
Identities:115/120(96%), Positives:117/120(97%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV LTDTTNQKTELQAI LALQDSGLEVNIVTDSQ
Sbjct  1028  YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAINLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS GIRKVL
Sbjct  1088  YALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)]
Sequence ID: P05959.3 Length: 1436 
Range 1: 1029 to 1148

Score:229 bits(585), Expect:6e-70, 
Method:Compositional matrix adjust., 
Identities:113/120(94%), Positives:119/120(99%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV+LTDTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1029  YVDGAANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1088

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVD+LVS GIRKVL
Sbjct  1089  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDRLVSTGIRKVL  1148



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_ARV2/SF2]
Sequence ID: P03369.3 Length: 1437 
Range 1: 1030 to 1149

Score:229 bits(584), Expect:9e-70, 
Method:Compositional matrix adjust., 
Identities:113/120(94%), Positives:119/120(99%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV++ DTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1030  YVDGAANRETKLGKAGYVTDRGRQKVVSIADTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1089

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1090  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1149



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)]
Sequence ID: P12497.4 Length: 1435 
Range 1: 1028 to 1147

Score:229 bits(583), Expect:1e-69, 
Method:Compositional matrix adjust., 
Identities:114/120(95%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV LTDTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1028  YVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVD LVSAGIRKVL
Sbjct  1088  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_90CF056]
Sequence ID: O93215.4 Length: 1435 
Range 1: 1028 to 1147

Score:228 bits(581), Expect:2e-69, 
Method:Compositional matrix adjust., 
Identities:110/120(92%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y+DGAANRETKLGKAGYVT+RG+QKVV+LT+TTNQKTELQAIYLALQDSGLEVNIVTDSQ
Sbjct  1028  YIDGAANRETKLGKAGYVTDRGKQKVVSLTETTNQKTELQAIYLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIE+LIKKEKVYL+WVPAHKGIGGNEQVDKLVS+G+RKVL
Sbjct  1088  YALGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGVRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9173]
Sequence ID: Q9WC63.3 Length: 1432 
Range 1: 1025 to 1144

Score:228 bits(581), Expect:2e-69, 
Method:Compositional matrix adjust., 
Identities:110/120(92%), Positives:120/120(100%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGA+NRETK+GKAGYVT++GRQKV+TLTDTTNQKTELQAIYLALQDSG+EVNIVTDSQ
Sbjct  1025  YVDGASNRETKVGKAGYVTDKGRQKVITLTDTTNQKTELQAIYLALQDSGIEVNIVTDSQ  1084

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIE+LIKKEKVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1085  YALGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1144



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)]
Sequence ID: P12499.3 Length: 1436 
Range 1: 1029 to 1148

Score:226 bits(577), Expect:7e-69, 
Method:Compositional matrix adjust., 
Identities:113/120(94%), Positives:116/120(96%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV  TDTTNQKTELQAI LALQDSGLEVNIVTDSQ
Sbjct  1029  YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQDSGLEVNIVTDSQ  1088

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS GIRKVL
Sbjct  1089  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVL  1148



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (NDK ISOLATE)]
Sequence ID: P18802.3 Length: 1432 
Range 1: 1025 to 1144

Score:226 bits(577), Expect:8e-69, 
Method:Compositional matrix adjust., 
Identities:113/120(94%), Positives:116/120(96%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV  TDTTNQKTELQAI LALQDSGLEVNIVTDSQ
Sbjct  1025  YVDGAANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQDSGLEVNIVTDSQ  1084

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS GIRKVL
Sbjct  1085  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVL  1144



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:B_89.6]
Sequence ID: Q73368.3 Length: 1435 
Range 1: 1028 to 1147

Score:226 bits(576), Expect:8e-69, 
Method:Compositional matrix adjust., 
Identities:112/120(93%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANR+TK GKAGYVT+RGRQKVV+L DTTNQKTELQAI+LALQDSGLEVNIVTDSQ
Sbjct  1028  YVDGAANRDTKSGKAGYVTDRGRQKVVSLADTTNQKTELQAIHLALQDSGLEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELV+QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1088  YALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:J_SE9280]
Sequence ID: Q9WC54.3 Length: 1432 
Range 1: 1025 to 1144

Score:226 bits(575), Expect:1e-68, 
Method:Compositional matrix adjust., 
Identities:110/120(92%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGA+NRETK GKAGYVT++GRQKVVTLTDTTNQKTEL AIYLAL+DSGLEVNIVTDSQ
Sbjct  1025  YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLALRDSGLEVNIVTDSQ  1084

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIE+LIKKEKVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1085  YALGIIQAQPDKSESELVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1144



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP255C]
Sequence ID: Q9QBZ5.3 Length: 1430 
Range 1: 1023 to 1142

Score:225 bits(574), Expect:2e-68, 
Method:Compositional matrix adjust., 
Identities:111/120(93%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV LT+TTNQKTELQAI+LALQDSG EVNIVTDSQ
Sbjct  1023  YVDGAANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELQAIHLALQDSGSEVNIVTDSQ  1082

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLI+KEKVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1083  YALGIIQAQPDKSESELVNQIIEQLIQKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1142



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:H_VI991]
Sequence ID: Q9Q720.3 Length: 1436 
Range 1: 1029 to 1148

Score:223 bits(567), Expect:2e-67, 
Method:Compositional matrix adjust., 
Identities:107/120(89%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETK+GKAGYVT+RG+QK+V+LT+TTNQKTELQAIYLALQ+SG EVNIVTDSQ
Sbjct  1029  YVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQESGPEVNIVTDSQ  1088

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIE+LIKKEK YL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1089  YALGIIQAQPDKSESELVNQIIEELIKKEKFYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1148



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)]
Sequence ID: P24740.3 Length: 1428 
Range 1: 1021 to 1140

Score:222 bits(565), Expect:3e-67, 
Method:Compositional matrix adjust., 
Identities:108/120(90%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT+RGRQKVV+LT+TTNQKTEL AI+LALQDSG EVNIVTDSQ
Sbjct  1021  YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGSEVNIVTDSQ  1080

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESE+VNQIIE+LI+KEKVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1081  YALGIIQAQPDRSESEIVNQIIEKLIEKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1140



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 1 (MAL ISOLATE)]
Sequence ID: P04588.3 Length: 1440 
Range 1: 1033 to 1152

Score:221 bits(562), Expect:8e-67, 
Method:Compositional matrix adjust., 
Identities:108/120(90%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETK GKAGYVT+RGRQKVV+LT+TTNQKTELQAI+LALQDSG EVNIVTDSQ
Sbjct  1033  YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQDSGSEVNIVTDSQ  1092

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESE+VNQIIEQLI+K+KVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1093  YALGIIQAQPDKSESEIVNQIIEQLIQKDKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1152



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_92BR025]
Sequence ID: O12158.2 Length: 1431 
Range 1: 1024 to 1143

Score:220 bits(561), Expect:1e-66, 
Method:Compositional matrix adjust., 
Identities:107/120(89%), Positives:117/120(97%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRE K+GKAGYVT+RGRQK+V++T+TTNQKTELQAI LALQDSG EVNIVTDSQ
Sbjct  1024  YVDGAANREIKMGKAGYVTDRGRQKIVSITETTNQKTELQAIQLALQDSGSEVNIVTDSQ  1083

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKE+VYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1084  YALGIIQAQPDKSESELVNQIIEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1143



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F2_MP257C]
Sequence ID: Q9QBZ1.3 Length: 1434 
Range 1: 1027 to 1146

Score:219 bits(559), Expect:2e-66, 
Method:Compositional matrix adjust., 
Identities:107/120(89%), Positives:116/120(96%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGY+T+RGRQKVV+LT+TTNQKTELQAI LALQDSG EVNIVTDSQ
Sbjct  1027  YVDGAANRETKLGKAGYITDRGRQKVVSLTETTNQKTELQAIQLALQDSGSEVNIVTDSQ  1086

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQA PD+SESE+VNQIIEQLI+KE+VYL+WVPAHKGIGGNEQVDKLVS GIRKVL
Sbjct  1087  YALGIIQAHPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGIGGNEQVDKLVSTGIRKVL  1146



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_97ZR-EQTB11]
Sequence ID: Q9QBZ9.2 Length: 1429 
Range 1: 1023 to 1142

Score:219 bits(558), Expect:2e-66, 
Method:Compositional matrix adjust., 
Identities:106/120(88%), Positives:118/120(98%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETK GKAGYVT++GRQKV+++T+TTNQKTELQAI+LALQDSG EVNIVTDSQ
Sbjct  1023  YVDGAANRETKQGKAGYVTDKGRQKVISITETTNQKTELQAIHLALQDSGSEVNIVTDSQ  1082

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKK++VYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1083  YALGIIQAQPDKSESELVNQIIEQLIKKDRVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1142



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_93BR020]
Sequence ID: O89290.3 Length: 1430 
Range 1: 1023 to 1142

Score:219 bits(558), Expect:3e-66, 
Method:Compositional matrix adjust., 
Identities:109/120(91%), Positives:115/120(95%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGA+NRETK GKAGYVT+RGRQK V+LT+TTNQK ELQAI LALQDSG EVNIVTDSQ
Sbjct  1023  YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAIQLALQDSGSEVNIVTDSQ  1082

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESELVNQIIEQLIKKEKVYL+WVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1083  YALGIIQAQPDKSESELVNQIIEQLIKKEKVYLSWVPAHKGIGGNEQVDKLVSAGIRKVL  1142



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:C_ETH2220]
Sequence ID: Q75002.3 Length: 1439 
Range 1: 1032 to 1151

Score:218 bits(554), Expect:9e-66, 
Method:Compositional matrix adjust., 
Identities:106/120(88%), Positives:116/120(96%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETK+GKAGYVT+RGRQK+V+LT+TTNQKTELQAI LALQDSG EVNIVTDSQ
Sbjct  1032  YVDGAANRETKIGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQDSGSEVNIVTDSQ  1091

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGII AQPD+SESE+VNQIIEQLI KE+VYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1092  YALGIILAQPDKSESEIVNQIIEQLISKERVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1151



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:F1_VI850]
Sequence ID: Q9QSR3.3 Length: 1430 
Range 1: 1023 to 1142

Score:217 bits(552), Expect:2e-65, 
Method:Compositional matrix adjust., 
Identities:104/120(87%), Positives:117/120(97%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGA+NRETK GKAGYVT++G+QKVV+LT+TTNQK ELQAIYLALQDSG EVNIVTDSQ
Sbjct  1023  YVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQKAELQAIYLALQDSGSEVNIVTDSQ  1082

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SESE+VNQIIEQLI+KE+VYL+WVPAHKGIGGNEQVDKLVSAG+RK+L
Sbjct  1083  YALGIIQAQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGIGGNEQVDKLVSAGVRKIL  1142



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_SE6165]
Sequence ID: O89940.3 Length: 1433 
Range 1: 1026 to 1145

Score:216 bits(551), Expect:2e-65, 
Method:Compositional matrix adjust., 
Identities:106/120(88%), Positives:116/120(96%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT++G+QK++TLT+TTNQK ELQAI LALQDS  EVNIVTDSQ
Sbjct  1026  YVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQDSRSEVNIVTDSQ  1085

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SE+ELVNQIIEQLIKKEKVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1086  YALGIIQAQPDRSEAELVNQIIEQLIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1145



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:K_96CM-MP535]
Sequence ID: Q9QBY3.3 Length: 1430 
Range 1: 1023 to 1142

Score:216 bits(549), Expect:4e-65, 
Method:Compositional matrix adjust., 
Identities:105/120(88%), Positives:116/120(96%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAA+RETK G+AGYVT+RGRQKVV++T+TTNQK ELQAI LALQDSG EVNIVTDSQ
Sbjct  1023  YVDGAAHRETKKGRAGYVTDRGRQKVVSITETTNQKAELQAICLALQDSGSEVNIVTDSQ  1082

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+SES+LVNQIIEQLIKKE++YL+WVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1083  YALGIIQAQPDKSESDLVNQIIEQLIKKERIYLSWVPAHKGIGGNEQVDKLVSAGIRKVL  1142



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz MB66]
Sequence ID: Q1A267.4 Length: 1438 
Range 1: 1027 to 1146

Score:214 bits(544), Expect:2e-64, 
Method:Compositional matrix adjust., 
Identities:103/120(86%), Positives:115/120(95%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT++GRQK+++LT+TTNQK ELQAI LALQDS +EVNIVTDSQ
Sbjct  1027  YVDGAANRETKLGKAGYVTDKGRQKIISLTETTNQKAELQAIQLALQDSEVEVNIVTDSQ  1086

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQ QPD SESE+VNQIIE+LIKKEKVYL+WVPAHKGIGGNEQ+DKLVS+GIRKVL
Sbjct  1087  YALGIIQGQPDTSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQIDKLVSSGIRKVL  1146



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 M:G_92NG083]
Sequence ID: O41798.3 Length: 1435 
Range 1: 1028 to 1147

Score:211 bits(537), Expect:2e-63, 
Method:Compositional matrix adjust., 
Identities:104/120(87%), Positives:114/120(95%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAG+VT++G+QK++TLT+TTNQK EL AI LALQDS  EVNIVTDSQ
Sbjct  1028  YVDGAANRETKLGKAGHVTDKGKQKIITLTETTNQKAELHAIQLALQDSRPEVNIVTDSQ  1087

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALGIIQAQPD+S SELVNQIIEQLIKKEKVYL+WVPAHKGIGGNEQVDKLVS+GIRKVL
Sbjct  1088  YALGIIQAQPDRSGSELVNQIIEQLIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVL  1147



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF30]
Sequence ID: O91080.3 Length: 1449 
Range 1: 1038 to 1157

Score:210 bits(534), Expect:5e-63, 
Method:Compositional matrix adjust., 
Identities:99/120(83%), Positives:115/120(95%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAG+VT+RGRQKVV++ DTTNQK ELQAI +ALQ+SG +VNIVTDSQ
Sbjct  1038  YVDGAANRETKLGKAGFVTDRGRQKVVSIADTTNQKAELQAILMALQESGRDVNIVTDSQ  1097

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YA+GII +QPD+SESELV+QIIE+LIKKE+VYL+WVPAHKGIGGNEQVDKLVS+GIRK+L
Sbjct  1098  YAMGIIHSQPDKSESELVSQIIEELIKKERVYLSWVPAHKGIGGNEQVDKLVSSGIRKIL  1157



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz EK505]
Sequence ID: Q1A249.3 Length: 1448 
Range 1: 1037 to 1156

Score:206 bits(525), Expect:7e-62, 
Method:Compositional matrix adjust., 
Identities:96/120(80%), Positives:113/120(94%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAG+VT+RGRQKV ++++TTNQ+ ELQA+ +ALQD+G EVNIVTDSQ
Sbjct  1037  YVDGAANRETKLGKAGFVTDRGRQKVTSISETTNQQAELQAVLMALQDAGQEVNIVTDSQ  1096

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y LGII +QPD+SESELVNQIIE+LIKKE++YL+WVPAHKGIGGNEQ+DKLVS GIRKVL
Sbjct  1097  YVLGIIHSQPDKSESELVNQIIEELIKKERIYLSWVPAHKGIGGNEQIDKLVSTGIRKVL  1156



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 N_YBF106]
Sequence ID: Q9IDV9.3 Length: 1449 
Range 1: 1038 to 1157

Score:201 bits(510), Expect:9e-60, 
Method:Compositional matrix adjust., 
Identities:96/120(80%), Positives:111/120(92%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAAN+ETKLGKAG+VT+RGRQKVV++ +TTNQK ELQAI LALQ+SG E NIVTDSQ
Sbjct  1038  YVDGAANKETKLGKAGFVTDRGRQKVVSIENTTNQKAELQAILLALQESGQEANIVTDSQ  1097

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YA+GII +QPD+SES+LV QIIE+LIKKE+VYL+WVPAHKGIGGNEQVD LVS+GIR VL
Sbjct  1098  YAMGIIHSQPDKSESDLVGQIIEELIKKERVYLSWVPAHKGIGGNEQVDXLVSSGIRXVL  1157



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz GAB1]
Sequence ID: P17283.2 Length: 1384 
Range 1: 977 to 1096

Score:188 bits(478), Expect:1e-55, 
Method:Compositional matrix adjust., 
Identities:97/120(81%), Positives:112/120(93%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETK GKAGYVT++G+QK+++L +TTNQ+ EL+A+ LALQDS  +VNIVTDSQ
Sbjct  977   YVDGAANRETKTGKAGYVTDKGKQKIISLENTTNQQAELKALLLALQDSDQQVNIVTDSQ  1036

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y LGIIQ+QPD SESELVNQIIE+LIKKEK+YL+WVPAHKGIGGNEQVDKLVSAGIRKVL
Sbjct  1037  YVLGIIQSQPDHSESELVNQIIEELIKKEKIYLSWVPAHKGIGGNEQVDKLVSAGIRKVL  1096



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_ANT70]
Sequence ID: Q77373.3 Length: 1435 
Range 1: 1027 to 1146

Score:184 bits(468), Expect:4e-54, 
Method:Compositional matrix adjust., 
Identities:90/120(75%), Positives:103/120(85%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANRETKLGKAGYVT +G+QK++ L +TTNQK EL AI LALQDS   VNIVTDSQ
Sbjct  1027  YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLALQDSKETVNIVTDSQ  1086

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YALG+I +QP QSES +V QIIE+L KKE+VYL WVPAHKGIGGNE++DKLVS  IR+VL
Sbjct  1087  YALGVISSQPTQSESPIVQQIIEELTKKEQVYLTWVPAHKGIGGNEKIDKLVSKDIRRVL  1146



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-1 O_MVP5180]
Sequence ID: Q79666.3 Length: 1446 
Range 1: 1029 to 1148

Score:177 bits(450), Expect:9e-52, 
Method:Compositional matrix adjust., 
Identities:85/120(71%), Positives:101/120(84%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANR TKLGKAGYVT +G+Q ++ L +TTNQK EL A+ +ALQDS  +VNIVTDSQ
Sbjct  1029  YVDGAANRNTKLGKAGYVTEQGKQNIIKLEETTNQKAELMAVLIALQDSKEQVNIVTDSQ  1088

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y LGII +QP QS+S +V QIIE+L KKE+VYL WVPAHKGIGGNE++DKLVS  IR+VL
Sbjct  1089  YVLGIISSQPTQSDSPIVQQIIEELTKKERVYLTWVPAHKGIGGNEKIDKLVSKDIRRVL  1148



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)]
Sequence ID: P12502.2 Length: 1449 
Range 1: 1037 to 1156

Score:172 bits(436), Expect:7e-50, 
Method:Compositional matrix adjust., 
Identities:80/120(67%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDG+ NR+++ GKAGYVT+RGR K   L  TTNQ+ EL+A YLAL DSG + NI+ DSQ
Sbjct  1037  YVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALADSGPKANIIVDSQ  1096

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GII  QP +SES LVNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1097  YVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1156



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM155 ISOLATE)]
Sequence ID: P27973.2 Length: 1470 
Range 1: 1054 to 1173

Score:172 bits(436), Expect:8e-50, 
Method:Compositional matrix adjust., 
Identities:79/120(66%), Positives:102/120(85%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGA NR++K GKAGY+T +G+Q+V  L +TTNQ+ EL AI +AL+DSG +VNIVTDSQ
Sbjct  1054  YVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQQAELTAIKMALEDSGPKVNIVTDSQ  1113

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YA+GI+ AQP QS+S LV QII Q+++KE +YL WVPAHKGIGGNE++DKLVS G+R++L
Sbjct  1114  YAMGILTAQPTQSDSPLVEQIIAQMVQKEAIYLQWVPAHKGIGGNEEIDKLVSKGVRRIL  1173



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)]
Sequence ID: P19505.2 Length: 1449 
Range 1: 1037 to 1156

Score:171 bits(434), Expect:1e-49, 
Method:Compositional matrix adjust., 
Identities:79/120(66%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDG+ NR+++ GKAGYVT+RGR K   L  TTNQ+ EL+A YLAL DSG + NI+ DSQ
Sbjct  1037  YVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALADSGPKANIIVDSQ  1096

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SES LVNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1097  YVMGIVAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1156



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [SIVcpz TAN1]
Sequence ID: Q8AII1.4 Length: 1462 
Range 1: 1055 to 1174

Score:170 bits(430), Expect:5e-49, 
Method:Compositional matrix adjust., 
Identities:80/120(67%), Positives:100/120(83%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANR++K G+AGYVTNRGR +   L +TTNQ+ EL A+ LAL+DSG +VNIVTDSQ
Sbjct  1055  YVDGAANRDSKKGRAGYVTNRGRYRSKDLENTTNQQAELWAVDLALKDSGAQVNIVTDSQ  1114

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +G++Q  PDQS+S +V QII++L +K  +YLAWVPAHKGIGGNE+VDKLVS  IRK+L
Sbjct  1115  YVMGVLQGLPDQSDSPIVEQIIQKLTQKTAIYLAWVPAHKGIGGNEEVDKLVSKNIRKIL  1174



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (isolate KR)]
Sequence ID: Q74120.3 Length: 1463 
Range 1: 1051 to 1170

Score:167 bits(424), Expect:3e-48, 
Method:Compositional matrix adjust., 
Identities:77/120(64%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGY+T+RGR KV  L  TTNQ+ EL+A  +AL DSG + NI+ DSQ
Sbjct  1051  YTDGSCNRQSKEGKAGYITDRGRDKVRILEQTTNQQAELEAFAMALTDSGPKANIIVDSQ  1110

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SES+LVNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1111  YVMGIVAGQPTESESKLVNQIIEEMIKKETLYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1170



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (ISOLATE GB1)]
Sequence ID: P22382.2 Length: 1441 
Range 1: 1037 to 1156

Score:167 bits(422), Expect:5e-48, 
Method:Compositional matrix adjust., 
Identities:77/120(64%), Positives:102/120(85%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAANR++K+GKAGY+T+RG Q+V    +TTNQ+TEL A+ LAL+DSG  VNIVTDSQ
Sbjct  1037  YVDGAANRDSKMGKAGYITDRGFQRVEEYLNTTNQQTELHAVKLALEDSGSYVNIVTDSQ  1096

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+ ++P +++  +V +IIE +  KEK+YL+W+PAHKGIGGNEQ+DKLVS+GIRKVL
Sbjct  1097  YVVGILASRPTETDHPIVKEIIELMKGKEKIYLSWLPAHKGIGGNEQIDKLVSSGIRKVL  1156



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_UC1]
Sequence ID: Q76634.3 Length: 1471 
Range 1: 1051 to 1170

Score:166 bits(421), Expect:7e-48, 
Method:Compositional matrix adjust., 
Identities:76/120(63%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR +K GKAGYVT+RG+ KV  L  TTNQ+ EL+A  LALQDSG +VNI+ DSQ
Sbjct  1051  YTDGSCNRASKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALALQDSGPQVNIIVDSQ  1110

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP ++ES LVNQIIE++IKKE +Y+ WVPAH+G+GGN++VD LVS GIR+VL
Sbjct  1111  YVMGIVAGQPTETESPLVNQIIEEMIKKEAIYVGWVPAHRGLGGNQEVDHLVSQGIRQVL  1170



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ROD)]
Sequence ID: P04584.3 Length: 1464 
Range 1: 1052 to 1171

Score:166 bits(420), Expect:9e-48, 
Method:Compositional matrix adjust., 
Identities:77/120(64%), Positives:99/120(82%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGYVT+RG+ KV  L  TTNQ+ EL+A  +AL DSG +VNI+ DSQ
Sbjct  1052  YTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTDSGPKVNIIVDSQ  1111

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI  +QP +SES++VNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1112  YVMGISASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1171



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE CAM2)]
Sequence ID: P24107.3 Length: 1462 
Range 1: 1050 to 1169

Score:166 bits(419), Expect:1e-47, 
Method:Compositional matrix adjust., 
Identities:76/120(63%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGYVT+RGR KV  L  TTNQ+ EL+A  +AL DSG + NI+ DSQ
Sbjct  1050  YTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAMALTDSGPKANIIVDSQ  1109

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SE+ +VNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1110  YVMGIVAGQPTESENRIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1169



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D194)]
Sequence ID: P17757.3 Length: 1462 
Range 1: 1050 to 1169

Score:165 bits(418), Expect:2e-47, 
Method:Compositional matrix adjust., 
Identities:76/120(63%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGYVT+RGR +V  L  T+NQ+ EL+A  +AL DSG +VNI+ DSQ
Sbjct  1050  YTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAFAMALADSGPKVNIIVDSQ  1109

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SE+ +VNQIIE +IKKE VY+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1110  YVMGIVAGQPTESENRIVNQIIEDMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1169



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE BEN)]
Sequence ID: P18096.4 Length: 1550 
Range 1: 1051 to 1170

Score:165 bits(417), Expect:3e-47, 
Method:Compositional matrix adjust., 
Identities:76/120(63%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGYVT+RG+ KV  L  TTNQ+ EL+   +AL DSG +VNI+ DSQ
Sbjct  1051  YTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALADSGPKVNIIVDSQ  1110

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SE+ +VNQIIE++IKKE VY+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1111  YVMGIVAGQPTESENRIVNQIIEEMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1170



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)]
Sequence ID: P05962.3 Length: 1461 
Range 1: 1049 to 1168

Score:164 bits(416), Expect:3e-47, 
Method:Compositional matrix adjust., 
Identities:74/120(62%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGY+T+RGR +V  L  TTNQ+ EL+A  +AL DSG + NI+ DSQ
Sbjct  1049  YTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAFAMALTDSGPKANIIVDSQ  1108

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SE+ +VNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1109  YVMGIVAGQPTESENRIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1168



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [HIV-2 B_EHO]
Sequence ID: Q89928.3 Length: 1464 
Range 1: 1049 to 1168

Score:164 bits(416), Expect:4e-47, 
Method:Compositional matrix adjust., 
Identities:74/120(62%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ N+ +K GKAGYVT+RG+ KV  L  TTNQ+ EL+A  LALQDSG +VNI+ DSQ
Sbjct  1049  YTDGSCNKASKEGKAGYVTDRGKDKVKPLEQTTNQQAELEAFALALQDSGPQVNIIVDSQ  1108

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+ AQP ++ES +V +IIE++IKKEK+Y+ WVPAHKG+GGN++VD LVS GIR++L
Sbjct  1109  YVMGIVAAQPTETESPIVREIIEEMIKKEKIYVGWVPAHKGLGGNQEVDHLVSQGIRQIL  1168



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE SBLISY)]
Sequence ID: P12451.3 Length: 1462 
Range 1: 1050 to 1169

Score:164 bits(414), Expect:6e-47, 
Method:Compositional matrix adjust., 
Identities:74/120(62%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKAGY+T+RG+ KV  L  TTNQ+ EL+A  +A+ DSG +VNIV DSQ
Sbjct  1050  YTDGSCNRQSKEGKAGYITDRGKDKVRILEQTTNQQAELEAFAMAVTDSGPKVNIVVDSQ  1109

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SES +VN+IIE++IKKE +Y+AWVPAHKGIGGN+++D LVS GIR+VL
Sbjct  1110  YVMGIVTGQPAESESRIVNKIIEEMIKKEAIYVAWVPAHKGIGGNQEIDHLVSQGIRQVL  1169



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE ST)]
Sequence ID: P20876.3 Length: 1463 
Range 1: 1051 to 1170

Score:163 bits(412), Expect:1e-46, 
Method:Compositional matrix adjust., 
Identities:73/120(61%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ N++++ GKAGY+T+RGR KV  L  TTNQ+ EL+A  +A+ DSG + NI+ DSQ
Sbjct  1051  YTDGSCNKQSREGKAGYITDRGRDKVRLLEQTTNQQAELEAFAMAVTDSGPKANIIVDSQ  1110

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SES++VNQIIE++IKKE +Y+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1111  YVMGIVAGQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1170



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)]
Sequence ID: P18042.4 Length: 1464 
Range 1: 1052 to 1171

Score:162 bits(411), Expect:1e-46, 
Method:Compositional matrix adjust., 
Identities:77/120(64%), Positives:95/120(79%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR++K GKA YVT+RGR KV  L  TTNQ+ EL+A  + L DSG +VNI+ DSQ
Sbjct  1052  YTDGSCNRQSKEGKARYVTDRGRDKVRVLERTTNQQAELEAFAMTLTDSGPKVNIIVDSQ  1111

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GI+  QP +SES +VNQIIE +IKKE VY+AWVPAHKGIGGN++VD LVS GIR+VL
Sbjct  1112  YVMGIVVGQPTESESRIVNQIIEDMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVL  1171



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (TYO-1 ISOLATE)]
Sequence ID: P05895.2 Length: 1467 
Range 1: 1057 to 1176

Score:162 bits(409), Expect:3e-46, 
Method:Compositional matrix adjust., 
Identities:77/120(64%), Positives:98/120(81%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y  GA NR +K GKAGY++  G+Q+V TL +TTNQ+ +L AI +AL+DSG  VNIVTDSQ
Sbjct  1057  YYVGACNRNSKEGKAGYISQYGKQRVETLENTTNQQAKLTAIKMALEDSGPNVNIVTDSQ  1116

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YA+GI+ AQP QS+S LV QII  +I+K+++YL WVPAHKGIGGNE++DKLVS GIR+VL
Sbjct  1117  YAMGILTAQPTQSDSPLVEQIIALMIQKQQIYLQWVPAHKGIGGNEEIDKLVSKGIRRVL  1176



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (AGM3 ISOLATE)]
Sequence ID: P27980.2 Length: 1465 
Range 1: 1055 to 1174

Score:162 bits(409), Expect:3e-46, 
Method:Compositional matrix adjust., 
Identities:75/120(63%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGA NR ++ GKAGY+T  G+Q+V  L +TTNQ+ EL AI +AL+DSG  VNIVTDSQ
Sbjct  1055  YVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQAELMAIKMALEDSGPNVNIVTDSQ  1114

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             YA+GI+ AQP QS+S L+ QII  +++K ++YL WVPA KGIGGNE++DKLVS G+RK+L
Sbjct  1115  YAMGILTAQPTQSDSPLIEQIIALMVQKHQIYLQWVPADKGIGGNEEIDKLVSQGMRKIL  1174



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (MM142-83 ISOLATE)]
Sequence ID: P05896.2 Length: 1448 
Range 1: 1036 to 1155

Score:160 bits(406), Expect:8e-46, 
Method:Compositional matrix adjust., 
Identities:73/120(61%), Positives:97/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDG+ ++++K GKAGY+T+RG+ KV  L  TTNQ+ EL+A  +AL DSG + NI+ DSQ
Sbjct  1036  YVDGSCSKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQ  1095

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GII   P +SES LVNQIIE++IKK ++Y+AWVPAHKGIGGN+++D LVS GIR+VL
Sbjct  1096  YVMGIITGCPTESESRLVNQIIEEMIKKTEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVL  1155



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Spacer peptide 1; Short=SP1; AltName: Full=p2; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=Transframe peptide; Short=TF; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Human immunodeficiency virus type 2 (ISOLATE D205,7)]
Sequence ID: P15833.3 Length: 1465 
Range 1: 1050 to 1169

Score:159 bits(401), Expect:3e-45, 
Method:Compositional matrix adjust., 
Identities:75/120(63%), Positives:95/120(79%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ NR +K GKAGYVT+RG+ KV  L  TTNQ+ EL+A  LAL DS  +VNI+ DSQ
Sbjct  1050  YTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALALTDSEPQVNIIVDSQ  1109

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y +GII AQP ++ES +V +IIE++IKKE VY+ WVPAHKG+GGN++VD LVS GIR+VL
Sbjct  1110  YVMGIIAAQPTETESPIVAKIIEEMIKKEAVYVGWVPAHKGLGGNQEVDHLVSQGIRQVL  1169



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus (isolate AGM / clone GRI-1)]
Sequence ID: Q02836.2 Length: 1472 
Range 1: 1050 to 1169

Score:157 bits(396), Expect:2e-44, 
Method:Compositional matrix adjust., 
Identities:74/120(62%), Positives:96/120(80%), Gaps:0/120(0%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             YVDGAA++ TKLGKAGY++ RG+ ++  L +TTNQ+ EL A+ +AL+DSG  VNIVTDSQ
Sbjct  1050  YVDGAASKVTKLGKAGYLSERGKSRIRELENTTNQQAELTAVKMALEDSGENVNIVTDSQ  1109

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
             Y + I+ A P +S S LV QII+ L+KK +VYL WVPAHKGIGGN ++DKLVS GIR++L
Sbjct  1110  YVMNILTACPQESNSPLVEQIIQALMKKRQVYLQWVPAHKGIGGNTEIDKLVSKGIRQIL  1169



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol; Contains: RecName: Full=Matrix protein p17; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p7; Short=NC; Contains: RecName: Full=p6-pol; Short=p6*; Contains: RecName: Full=Protease; AltName: Full=PR; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; AltName: Full=Exoribonuclease H; AltName: Full=p66 RT; Contains: RecName: Full=p51 RT; Contains: RecName: Full=p15; Contains: RecName: Full=Integrase; Short=IN [Simian immunodeficiency virus - mac K6W]
Sequence ID: P05897.2 Length: 1446 
Range 1: 1036 to 1153

Score:124 bits(312), Expect:4e-33, 
Method:Compositional matrix adjust., 
Identities:64/120(53%), Positives:88/120(73%), Gaps:2/120(1%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG+ N+++K GKAGY+T+RG+  V  LT TTNQ+ EL+AIY  ++DSG + NI+ + Q
Sbjct  1036  YTDGSCNKQSKEGKAGYITDRGKDIVKVLT-TTNQQAELEAIYHGIEDSGPKRNIIVELQ  1094

Query  61    YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
                G     P +SES LVNQIIE++IK  +VY+AWVPA +GIGGN+++  LVS G R+VL
Sbjct  1095  VCYGNNNRFPTESESRLVNQIIEEMIKV-RVYVAWVPALEGIGGNQEIGPLVSQGFRQVL  1153



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate TM2)]
Sequence ID: P31822.1 Length: 1124 
Range 1: 598 to 706

Score:100 bits(249), Expect:1e-24, 
Method:Compositional matrix adjust., 
Identities:51/112(46%), Positives:77/112(68%), Gaps:3/112(2%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
            Y+DG+  ++ K  +A Y TN G+ +++ + + +NQK E+QA+ LAL+    E+NI+TDSQ
Sbjct  598  YIDGS-RKQGKAARAAYWTNTGKWQIMEI-EGSNQKAEVQALLLALKAGSEEMNIITDSQ  655

Query  61   YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLV  112
            Y L I+  QPD  E  L  +++EQ+ KK  +++ WVP HKGI GNE+VDKL 
Sbjct  656  YILNILNQQPDLMEG-LWQEVLEQMEKKIAIFIDWVPGHKGIPGNEEVDKLC  706



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate Petaluma)]
Sequence ID: P16088.1 Length: 1124 
Range 1: 599 to 707

Score:99.4 bits(246), Expect:3e-24, 
Method:Compositional matrix adjust., 
Identities:52/112(46%), Positives:75/112(66%), Gaps:3/112(2%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
            Y+DG   +  K  KA Y T+ G+ +V+ L + +NQK E+QA+ LAL+    E+NI+TDSQ
Sbjct  599  YIDGG-RKLGKAAKAAYWTDTGKWRVMDL-EGSNQKAEIQALLLALKAGSEEMNIITDSQ  656

Query  61   YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLV  112
            Y + II  QPD  E  +  +++E+L KK  +++ WVP HKGI GNE+VDKL 
Sbjct  657  YVINIILQQPDMMEG-IWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLC  707



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Feline immunodeficiency virus (isolate San Diego)]
Sequence ID: P19028.1 Length: 1124 
Range 1: 599 to 707

Score:99.0 bits(245), Expect:4e-24, 
Method:Compositional matrix adjust., 
Identities:51/112(46%), Positives:76/112(67%), Gaps:3/112(2%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
            Y+DG   +  K  KA Y T+ G+ +V+ L + +NQK E+QA+ LAL+    E+NI+TDSQ
Sbjct  599  YIDGG-RKLGKAAKAAYWTDTGKWQVMEL-EGSNQKAEIQALLLALKAGPEEMNIITDSQ  656

Query  61   YALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLV  112
            Y + I+  QPD+ E  +  +++E+L KK  +++ WVP HKGI GNE+VDKL 
Sbjct  657  YMINILSQQPDKMEG-IWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLC  707



>RecName: Full=Pol polyprotein [Simian immunodeficiency virus (AGM266 ISOLATE)]
Sequence ID: P12500.1 Length: 100 
Range 1: 39 to 100

Score:84.0 bits(206), Expect:3e-21, 
Method:Compositional matrix adjust., 
Identities:40/62(65%), Positives:50/62(80%), Gaps:0/62(0%)

Query  1   YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
           YVDGA NR ++ GKAGY+T +G+Q+V  L +TTNQ+ EL AI +AL+DSG  VNIVTDSQ
Sbjct  39  YVDGACNRNSREGKAGYITQQGKQRVEKLENTTNQQAELTAIKMALEDSGPRVNIVTDSQ  98

Query  61  YA  62
           YA
Sbjct  99  YA  100



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Jembrana disease virus]
Sequence ID: Q82851.1 Length: 1432 
Range 1: 966 to 1078

Score:79.0 bits(193), Expect:4e-17, 
Method:Compositional matrix adjust., 
Identities:46/117(39%), Positives:72/117(61%), Gaps:5/117(4%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG   + +K   A +   + R++V      TNQ+ EL+A+ +ALQD   ++NI+TDS+
Sbjct  966   YTDGG-KKGSKAAAAYWREGKIRREVFP---GTNQQAELKAVLMALQDGPAKMNIITDSR  1021

Query  61    YALGIIQAQPDQSESE-LVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI  116
             YA   ++ +P+    E L  +I E+L +KE V ++WVP HKGIGGN +VD+ V   +
Sbjct  1022  YAFEGMREEPETWGREGLWKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQKAL  1078



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Caprine arthritis encephalitis virus strain Cork]
Sequence ID: P33459.1 Length: 1109 
Range 1: 582 to 693

Score:70.5 bits(171), Expect:3e-14, 
Method:Compositional matrix adjust., 
Identities:41/115(36%), Positives:69/115(60%), Gaps:5/115(4%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
            Y DG   ++ K+G  G++ + G +K     + TNQ+ EL+AI  AL+     +N+VTDS+
Sbjct  582  YTDGG--KKNKVGSLGFIVSTG-EKFRKHEEGTNQQLELRAIEEALKQGPQTMNLVTDSR  638

Query  61   YALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
            YA   +    D+   ++ +  +I+E   KK+++ + WVP HKGI  NE++DK +S
Sbjct  639  YAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEEIDKYIS  693



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (clone CL22)]
Sequence ID: P32542.1 Length: 1146 
Range 1: 624 to 733

Score:69.7 bits(169), Expect:7e-14, 
Method:Compositional matrix adjust., 
Identities:46/112(41%), Positives:61/112(54%), Gaps:4/112(3%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDS-GLEVNIVTDS  59
            Y DG   ++   G A YVT+ GR K   L   T+Q  E  AI +AL+D+   +VNIVTDS
Sbjct  624  YTDGG--KQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDTRDKQVNIVTDS  681

Query  60   QYAL-GIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDK  110
             Y    I +    +        II+ + +KE VY AWVP HKGI GN+  D+
Sbjct  682  YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADE  733



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (CLONE 1369)]
Sequence ID: P11204.1 Length: 1146 
Range 1: 624 to 733

Score:69.7 bits(169), Expect:7e-14, 
Method:Compositional matrix adjust., 
Identities:46/112(41%), Positives:61/112(54%), Gaps:4/112(3%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDS-GLEVNIVTDS  59
            Y DG   ++   G A YVT+ GR K   L   T+Q  E  AI +AL+D+   +VNIVTDS
Sbjct  624  YTDGG--KQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDTRDKQVNIVTDS  681

Query  60   QYAL-GIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDK  110
             Y    I +    +        II+ + +KE VY AWVP HKGI GN+  D+
Sbjct  682  YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADE  733



>RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna/maedi virus EV1 KV1772]
Sequence ID: P35956.2 Length: 1506 
Range 1: 978 to 1089

Score:69.3 bits(168), Expect:9e-14, 
Method:Compositional matrix adjust., 
Identities:42/115(37%), Positives:67/115(58%), Gaps:5/115(4%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG   ++   G  GY+T+ G +K     + TNQ+ EL+AI  A +    ++NIVTDS+
Sbjct  978   YTDGG--KKNGRGSLGYITSTG-EKFRIHEEGTNQQLELRAIEEACKQGPEKMNIVTDSR  1034

Query  61    YALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
             YA   +    D+    + +  +I+E +  KEK+ + WVP HKGI  NE++D+ +S
Sbjct  1035  YAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYIS  1089



>RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol; Contains: RecName: Full=Matrix protein p16; Short=MA; Contains: RecName: Full=p2L; Contains: RecName: Full=Capsid protein p26; Short=CA; Contains: RecName: Full=p3; Contains: RecName: Full=Transframe peptide; AltName: Full=p11; Contains: RecName: Full=Protease; AltName: Full=P119; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; AltName: Full=P72; Contains: RecName: Full=Integrase; Short=IN [Bovine immunodeficiency virus R29]
Sequence ID: P19560.2 Length: 1475 
Range 1: 1006 to 1118

Score:68.9 bits(167), Expect:1e-13, 
Method:Compositional matrix adjust., 
Identities:45/121(37%), Positives:68/121(56%), Gaps:9/121(7%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG    +T      +   R + KV      TNQ+ EL+AI +AL D   ++NI+TDS+
Sbjct  1006  YTDGGKKGKTA-AAVYWCEGRTKSKVFP---GTNQQAELKAICMALLDGPPKMNIITDSR  1061

Query  61    YALGIIQAQPDQSESE-LVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKV  119
             YA   ++ +P+    E +  +I + L  K+ V + WVPAHKGIGGN + D+    G++K 
Sbjct  1062  YAYEGMREEPETWAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNTEADE----GVKKA  1117

Query  120   L  120
             L
Sbjct  1118  L  1118



>RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS1)]
Sequence ID: P23426.2 Length: 1506 
Range 1: 978 to 1089

Score:68.9 bits(167), Expect:1e-13, 
Method:Compositional matrix adjust., 
Identities:41/115(36%), Positives:66/115(57%), Gaps:5/115(4%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG   ++   G  GY+ + G +K     + TNQ+ EL+AI  A +    ++NIVTDS+
Sbjct  978   YTDGG--KKNGRGSLGYIASTG-EKFRIYEEGTNQQLELRAIEEACKQGPEKMNIVTDSR  1034

Query  61    YALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
             YA   +    D+    + +  +I+E +  KEK+ + WVP HKGI  NE++D+ +S
Sbjct  1035  YAYEFMLRNWDEEVIRNPIQARIMELMHNKEKIGVHWVPGHKGIPQNEEIDRYIS  1089



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Integrase; Short=IN [Equine infectious anemia virus (ISOLATE WYOMING)]
Sequence ID: P03371.1 Length: 1145 
Range 1: 623 to 732

Score:68.6 bits(166), Expect:2e-13, 
Method:Compositional matrix adjust., 
Identities:46/112(41%), Positives:61/112(54%), Gaps:4/112(3%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDS-GLEVNIVTDS  59
            Y DG   ++   G A YVT+ GR K   L   T+Q  E  AI +AL+D+   +VNIVTDS
Sbjct  623  YTDGG--KQNGEGIAAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDTRDKQVNIVTDS  680

Query  60   QYAL-GIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDK  110
             Y    I +    +        II+ + +KE VY AWVP HKGI GN+  D+
Sbjct  681  YYCWKNITEGLGLEGPQNPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLADE  732



>RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514 / clone LV1-1KS2)]
Sequence ID: P23427.2 Length: 1506 
Range 1: 978 to 1089

Score:67.4 bits(163), Expect:4e-13, 
Method:Compositional matrix adjust., 
Identities:41/115(36%), Positives:66/115(57%), Gaps:5/115(4%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG   ++   G  GY+ + G +K     + TNQ+ EL+AI  A +    ++NIVTDS+
Sbjct  978   YTDGG--KKNGRGSLGYIASTG-EKFRIHEEGTNQQLELRAIEEACKQGPEKMNIVTDSR  1034

Query  61    YALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
             YA   +    D+    + +  +I+E +  KEK+ + WVP HKGI  NE++D+ +S
Sbjct  1035  YAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYIS  1089



>RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p16; Contains: RecName: Full=Capsid protein p25; Contains: RecName: Full=Nucleocapsid protein p14; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Visna lentivirus (strain 1514)]
Sequence ID: P03370.2 Length: 1506 
Range 1: 978 to 1089

Score:67.4 bits(163), Expect:4e-13, 
Method:Compositional matrix adjust., 
Identities:41/115(36%), Positives:66/115(57%), Gaps:5/115(4%)

Query  1     YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
             Y DG   ++   G  GY+ + G +K     + TNQ+ EL+AI  A +    ++NIVTDS+
Sbjct  978   YTDGG--KKNGRGSLGYIASTG-EKFRIHEEGTNQQLELRAIEEACKQGPEKMNIVTDSR  1034

Query  61    YALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
             YA   +    D+    + +  +I+E +  KEK+ + WVP HKGI  NE++D+ +S
Sbjct  1035  YAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYIS  1089



>RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease; AltName: Full=Retropepsin; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; AltName: Full=Exoribonuclease H; Contains: RecName: Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase; Short=dUTPase; Contains: RecName: Full=Integrase; Short=IN [Ovine lentivirus (strain SA-OMVV)]
Sequence ID: P16901.1 Length: 1086 
Range 1: 558 to 669

Score:63.2 bits(152), Expect:1e-11, 
Method:Compositional matrix adjust., 
Identities:39/115(34%), Positives:67/115(58%), Gaps:5/115(4%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQ  60
            Y DG   ++   G  G++ + G  K     + TNQ+ EL+AI  A +    ++NIVTDS+
Sbjct  558  YTDGG--KKNGKGSLGFIASTG-VKFRKHEEGTNQQLELRAIEEACKQGPEKMNIVTDSR  614

Query  61   YALGIIQAQPDQS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
            YA   ++   D+   ++ +  +I++ +  KE++ + WVP HKGI  NE++DK +S
Sbjct  615  YAYEFMRRNWDEEVIKNPIQARIMKLVHDKEQIGVHWVPGHKGIPQNEEIDKYIS  669



>RecName: Full=Pol polyprotein [Simian immunodeficiency virus (AGM385 ISOLATE)]
Sequence ID: P12501.1 Length: 100 
Range 1: 65 to 100

Score:49.7 bits(117), Expect:8e-08, 
Method:Compositional matrix adjust., 
Identities:21/36(58%), Positives:28/36(77%), Gaps:0/36(0%)

Query  1   YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQK  36
           YVDGA NR ++ GKAGY+T  G+Q+V  L +TTNQ+
Sbjct  65  YVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQ  100



>RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas stutzeri A1501]
Sequence ID: A4VLR0.1 Length: 151 
Range 1: 41 to 142

Score:48.5 bits(114), Expect:5e-07, 
Method:Compositional matrix adjust., 
Identities:35/103(34%), Positives:50/103(48%), Gaps:17/103(16%)

Query  30   TDTTNQKTELQAIYLALQD--SGLEVNIVTDSQYAL-GIIQAQPDQSE------------  74
             DTTN + EL A   AL +     +V +VTDSQY + GI    P+  +            
Sbjct  41   PDTTNNRMELMAAIRALAELKRPCKVRLVTDSQYVMQGINDWMPNWKKRGWKTASKQPVK  100

Query  75   -SELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI  116
             ++L  Q+ EQ + + +V   WV  H G  GNEQ D L + G+
Sbjct  101  NADLWQQLDEQ-VNRHEVSWQWVRGHTGHPGNEQADLLANRGV  142



>RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. novicida U112]
Sequence ID: A0Q6W0.1 Length: 152 
>RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. tularensis WY96-3418]
Sequence ID: A4IYE6.1 Length: 152 >RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. holarctica FTNF002-00]
Sequence ID: A7NBM9.1 Length: 152 >RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. mediasiatica FSC147]
Sequence ID: B2SFV9.1 Length: 152 >RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. holarctica OSU18]
Sequence ID: Q0BMB7.1 Length: 152 >RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. tularensis FSC198]
Sequence ID: Q14IN1.2 Length: 152 >RecName: Full=Ribonuclease H; Short=RNase H [Francisella tularensis subsp. holarctica LVS]
Sequence ID: Q2A3X6.1 Length: 152  
Range 1: 13 to 150

Score:46.6 bits(109), Expect:3e-06, 
Method:Compositional matrix adjust., 
Identities:39/138(28%), Positives:61/138(44%), Gaps:18/138(13%)

Query  1    YVDGAANRETKLGKAGYV-TNRGRQKVV--TLTDTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA      +G  G + +  G  K +  +  DTTN + EL A    LQ      ++ I
Sbjct  13   YTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQALKRKCDITI  72

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDS+Y             A G   A   + +++ + Q ++ L  K  V   WV  H G 
Sbjct  73   YTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWGWVKGHSGN  132

Query  103  GGNEQVDKLVSAGIRKVL  120
             GNE+ D+L +  I +++
Sbjct  133  AGNEKADELANKAIAELI  150



>RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas eutropha C91]
Sequence ID: Q0AE34.1 Length: 162 
Range 1: 13 to 157

Score:46.2 bits(108), Expect:5e-06, 
Method:Compositional matrix adjust., 
Identities:41/145(28%), Positives:61/145(42%), Gaps:25/145(17%)

Query  1    YVDGAANRETKLGKAG---YVTNRGRQKVVTLTDTTNQKTELQAIYLALQ------DSG-  50
            + DGA       G  G   +     R+       TTN + EL A   ALQ      D+G 
Sbjct  13   FTDGACKGNPGPGGWGVCLHFNGETREFFGGEPVTTNNRMELLAAIRALQELESLEDNGQ  72

Query  51   --LEVNIVTDSQYA-------------LGIIQAQPDQSESELVNQIIEQLIKKEKVYLAW  95
              L+V + TDSQY               G   A     ++E + + ++ L ++ +V   W
Sbjct  73   QHLQVQLHTDSQYVQKGISEWIHGWKKRGWRTADKKPVKNEALWRELDDLSQRHQVEWFW  132

Query  96   VPAHKGIGGNEQVDKLVSAGIRKVL  120
            V  H G  GNE+ D+L + G+  VL
Sbjct  133  VRGHNGHAGNERADRLANQGVESVL  157



>RecName: Full=Ribonuclease H; Short=RNase H [Nitrosomonas europaea ATCC 19718]
Sequence ID: Q82XV8.1 Length: 161 
Range 1: 47 to 156

Score:45.8 bits(107), Expect:6e-06, 
Method:Compositional matrix adjust., 
Identities:36/110(33%), Positives:52/110(47%), Gaps:21/110(19%)

Query  32   TTNQKTELQAIYLALQ------DSG--LEVNIVTDSQYA-------------LGIIQAQP  70
            TTN + EL A   ALQ      D+G  L V + TDSQY               G + A  
Sbjct  47   TTNNRMELLAAIRALQALESLPDTGQSLRVQLHTDSQYVQKGISEWVHSWKKRGWLTADK  106

Query  71   DQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
               ++E + + ++QL ++ +V   WV  H G  GNE+ D L + G+  VL
Sbjct  107  KPVKNEALWKELDQLSRRYQVEWFWVRGHNGHDGNERADMLANRGVVSVL  156



>RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas aeruginosa PA7]
Sequence ID: A6V705.1 Length: 148 
Range 1: 43 to 143

Score:45.1 bits(105), Expect:1e-05, 
Method:Compositional matrix adjust., 
Identities:31/101(31%), Positives:50/101(49%), Gaps:15/101(14%)

Query  31   DTTNQKTELQAIYLALQ--DSGLEVNIVTDSQYAL-GIIQAQPDQ--------SESELVN  79
            DTTN + EL A   AL        + +VTDS+Y + GI +  P+         S+  + N
Sbjct  43   DTTNNRMELMAAIQALAALKRSCPIRLVTDSEYVMRGITEWLPNWKKRGWKTASKQPVKN  102

Query  80   ----QIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI  116
                Q +++ + + +V   WV  H G  GNE+ D+L + G+
Sbjct  103  ADLWQALDEQVARHQVEWQWVRGHTGDPGNERADQLANRGV  143



>RecName: Full=Ribonuclease H; Short=RNase H [Francisella philomiragia subsp. philomiragia ATCC 25017]
Sequence ID: B0TZ91.1 Length: 152 
Range 1: 13 to 146

Score:45.1 bits(105), Expect:1e-05, 
Method:Compositional matrix adjust., 
Identities:39/134(29%), Positives:59/134(44%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYV-TNRGRQKVVTLT--DTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA      +G  G + +  G  K ++    DTTN + EL A    LQ      ++ I
Sbjct  13   YTDGACKGNPGIGGWGAILSYNGVDKEISGAEKDTTNNRMELMAAIKTLQALKRKCDITI  72

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDS+Y             A G   A   + +++ + Q ++ L  K  V  +WV  H G 
Sbjct  73   YTDSKYLQNGINQWLANWKANGWKTAAKKEVKNKDLWQELDSLTTKHNVTWSWVKGHSGN  132

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D+L +  I
Sbjct  133  QGNEKADELANKAI  146



>RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas protegens Pf-5]
Sequence ID: Q4KBI1.1 Length: 150 
Range 1: 41 to 144

Score:44.7 bits(104), Expect:2e-05, 
Method:Compositional matrix adjust., 
Identities:32/105(30%), Positives:50/105(47%), Gaps:17/105(16%)

Query  31   DTTNQKTELQAIYLALQD--SGLEVNIVTDSQYALGIIQ--------------AQPDQSE  74
            +TTN + EL A    L++     +V +VTDSQY +  I               A+     
Sbjct  41   NTTNNRMELMAAIRGLEELKRQCDVQLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKN  100

Query  75   SELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKV  119
            ++L  Q+ EQ + +  V   WV  H G  GNE+ D+L + G+ +V
Sbjct  101  ADLWQQLDEQ-VNRHNVTWKWVRGHTGHHGNERADQLANRGVDEV  144



>RecName: Full=Ribonuclease H; Short=RNase H [Ralstonia solanacearum GMI1000]
Sequence ID: Q8XZ91.1 Length: 151 
Range 1: 7 to 140

Score:44.7 bits(104), Expect:2e-05, 
Method:Compositional matrix adjust., 
Identities:38/134(28%), Positives:59/134(44%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYV-TNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA      LG  G V  + G +K +   +  TTN + EL A+  A +       V +
Sbjct  7    YSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKRPCRVKV  66

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY             A G   A     +++ + + +++L+   +V   WV  H G 
Sbjct  67   YTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWVKGHAGH  126

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L + G+
Sbjct  127  PGNERADALANKGV  140



>RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas aeruginosa LESB58]
Sequence ID: B7VB62.1 Length: 148 
>RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas aeruginosa UCBPP-PA14]
Sequence ID: Q02KV8.1 Length: 148 >RecName: Full=Ribonuclease HI; Short=RNase HI [Pseudomonas aeruginosa PAO1]
Sequence ID: Q9I2S9.1 Length: 148  
Range 1: 10 to 143

Score:44.3 bits(103), Expect:2e-05, 
Method:Compositional matrix adjust., 
Identities:37/136(27%), Positives:65/136(47%), Gaps:22/136(16%)

Query  1    YVDGAANRETKLGKAGY---VTNRGRQKVVT--LTDTTNQKTELQAIYLALQ--DSGLEV  53
            Y DGA   +   G+ G+   +  +G ++ +     DTTN + EL A   AL        +
Sbjct  10   YTDGAC--KGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRSCPI  67

Query  54   NIVTDSQYAL-GIIQAQPDQ--------SESELVN----QIIEQLIKKEKVYLAWVPAHK  100
             ++TDS+Y + GI +  P+         S+  + N    Q +++ + + +V   WV  H 
Sbjct  68   RLITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVRGHT  127

Query  101  GIGGNEQVDKLVSAGI  116
            G  GNE+ D+L + G+
Sbjct  128  GDPGNERADQLANRGV  143



>RecName: Full=Ribonuclease H; Short=RNase H [Pseudomonas mendocina ymp]
Sequence ID: A4XU11.1 Length: 150 
Range 1: 10 to 146

Score:44.3 bits(103), Expect:2e-05, 
Method:Compositional matrix adjust., 
Identities:41/137(30%), Positives:63/137(45%), Gaps:18/137(13%)

Query  1    YVDGAANRETKLGKAG-YVTNRGRQKVVTLTD--TTNQKTELQAIYLAL--QDSGLEVNI  55
            Y DGA       G  G  +  +G +K +   D  TTN + EL A    L        V +
Sbjct  10   YTDGACKGNPGPGGWGALLVYKGVEKELWGGDPSTTNNRMELMAAIAGLIALTRPCSVKL  69

Query  56   VTDSQYAL-GIIQAQPDQ--------SESELVN----QIIEQLIKKEKVYLAWVPAHKGI  102
            VTDSQY + GI +  P+         S+  + N    Q +++ + + +V   WV  H G 
Sbjct  70   VTDSQYVMKGIQEWLPNWKKRGWKTASKEPVKNADLWQKLDEEVNRHQVSWQWVRGHTGH  129

Query  103  GGNEQVDKLVSAGIRKV  119
             GNE+ D+L + G+ +V
Sbjct  130  PGNERADQLANRGVDEV  146



>RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus metallidurans CH34]
Sequence ID: Q1LL89.1 Length: 145 
Range 1: 7 to 143

Score:43.9 bits(102), Expect:3e-05, 
Method:Compositional matrix adjust., 
Identities:39/137(28%), Positives:56/137(40%), Gaps:18/137(13%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTL---TDTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA       G  G V   G  +       + TTN + EL A+  AL+       VNI
Sbjct  7    YSDGACKGNPGPGGWGAVLVAGGHEKELFGGESPTTNNRMELMAVIEALRALKRPCIVNI  66

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY             A G   A     ++  + Q +++  K  ++   WV  H G 
Sbjct  67   YTDSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEAQKPHQITWHWVRGHNGH  126

Query  103  GGNEQVDKLVSAGIRKV  119
             GNE+ D L + G+  +
Sbjct  127  PGNERADALANRGVASI  143



>RecName: Full=Ribonuclease H; Short=RNase H [Alcanivorax borkumensis SK2]
Sequence ID: Q0VQ76.1 Length: 151 
Range 1: 7 to 140

Score:43.1 bits(100), Expect:5e-05, 
Method:Compositional matrix adjust., 
Identities:37/134(28%), Positives:61/134(45%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTL---TDTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA       G  G +   G ++        +TTN + EL A  +AL+  ++  +V +
Sbjct  7    YTDGACRGNPGPGGWGAILLYGDKEKELFGGEPETTNNRMELMAAIVALETLNTPCQVVL  66

Query  56   VTDSQYAL-GIIQAQPDQ--------SESELVN----QIIEQLIKKEKVYLAWVPAHKGI  102
             TDS+Y + GI Q   +         S+  + N    Q ++  +++  +   WV  H G 
Sbjct  67   TTDSKYVMDGITQWMANWKKRGWKTASKQPVKNVDLWQRLDAAVQRHDIDWQWVKGHSGH  126

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L + GI
Sbjct  127  PGNERADALANRGI  140



>RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus pinatubonensis JMP134]
Sequence ID: Q46Z81.1 Length: 145 
Range 1: 7 to 140

Score:43.1 bits(100), Expect:5e-05, 
Method:Compositional matrix adjust., 
Identities:37/134(28%), Positives:55/134(41%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTL---TDTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA       G  G V   G  +        +TTN + E+ A+  AL+       V +
Sbjct  7    YSDGACKGNPGRGGWGAVLVAGTNEKELFGGEANTTNNRMEMTAVIEALRALKRPCTVQV  66

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY             A G   A     ++  + Q ++ L++  K+   WV  H G 
Sbjct  67   YTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLVQPHKITWHWVRGHNGH  126

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L + G+
Sbjct  127  PGNERADALANRGV  140



>RecName: Full=Ribonuclease H; Short=RNase H [Nitrosococcus oceani ATCC 19707]
Sequence ID: Q3J7D4.1 Length: 147 
Range 1: 8 to 141

Score:42.4 bits(98), Expect:1e-04, 
Method:Compositional matrix adjust., 
Identities:36/134(27%), Positives:59/134(44%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAG-YVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNI  55
            + DGA       G  G  +  +GR+K ++  +  TTN + EL A   AL+       V++
Sbjct  8    FTDGACRGNPGPGGWGALLCYQGREKTLSGAESKTTNNRMELMAAIRALETLKRPCRVHL  67

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY               G   A     ++  + Q ++Q+  + ++   WV  H+G 
Sbjct  68   TTDSQYLRQGITCWLSNWKRRGWKTANRQPVKNIDLWQRLDQVAAQHRIEWFWVRGHEGH  127

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L  + I
Sbjct  128  PGNERADALARSAI  141



>RecName: Full=Ribonuclease H; Short=RNase H [Janthinobacterium sp. Marseille]
Sequence ID: A6SXA4.1 Length: 144 
Range 1: 7 to 140

Score:42.0 bits(97), Expect:1e-04, 
Method:Compositional matrix adjust., 
Identities:40/134(30%), Positives:57/134(42%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYVTNRG-RQKVVT--LTDTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA       G  G +   G R+K +     DTTN + EL+A+  AL       EV +
Sbjct  7    YSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTRPCEVVV  66

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY             A G   A     ++  + Q ++    + K+   WV  H G 
Sbjct  67   HTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWVRGHNGH  126

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L + G+
Sbjct  127  AGNERADALANRGV  140



>RecName: Full=Ribonuclease H; Short=RNase H [Methylobacillus flagellatus KT]
Sequence ID: Q1H190.1 Length: 151 
Range 1: 9 to 146

Score:40.8 bits(94), Expect:4e-04, 
Method:Compositional matrix adjust., 
Identities:40/138(29%), Positives:63/138(45%), Gaps:18/138(13%)

Query  1    YVDGAANRETKLGKAG-YVTNRGRQKVVTLTD--TTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA       G  G +++  G +K +   +  TTN + EL A+  AL+       V I
Sbjct  9    YADGACKGNPGPGGWGAWLSFAGHEKELWGGELVTTNNRMELTAVIRALEALKRQCSVRI  68

Query  56   VTDSQYA-LGIIQAQPDQ-------SESELVNQI-----IEQLIKKEKVYLAWVPAHKGI  102
             TDS Y   GI +            S+ + V  +     ++ L+++ +V   WV  H G 
Sbjct  69   YTDSVYVQKGITEWVHSWKARNWLTSDRKPVKNVDLWKALDSLVQQHQVEWVWVKGHAGN  128

Query  103  GGNEQVDKLVSAGIRKVL  120
             GNE+ D L + G+ +VL
Sbjct  129  VGNERADALANKGVDQVL  146



>RecName: Full=Ribonuclease H; Short=RNase H [Cupriavidus necator H16]
Sequence ID: Q0K8W6.1 Length: 145 
Range 1: 7 to 143

Score:40.8 bits(94), Expect:4e-04, 
Method:Compositional matrix adjust., 
Identities:36/137(26%), Positives:56/137(40%), Gaps:18/137(13%)

Query  1    YVDGAANRETKLGKAGYVTNRG---RQKVVTLTDTTNQKTELQAIYLALQ--DSGLEVNI  55
            Y DGA       G  G V   G   ++      +TTN + E+ A+  AL+       V +
Sbjct  7    YSDGACKGNPGRGGWGAVLVAGASEKEMFGGEPNTTNNRMEMTAVIEALRALKRPCVVRV  66

Query  56   VTDSQY-------------ALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY             A G   A     ++  + Q ++ L +  ++   WV  H G 
Sbjct  67   YTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHWVRGHNGH  126

Query  103  GGNEQVDKLVSAGIRKV  119
             GNE+ D L + G+  +
Sbjct  127  PGNERADALANRGVESI  143



>RecName: Full=Ribonuclease H; Short=RNase H [Novosphingobium aromaticivorans DSM 12444]
Sequence ID: Q2G9E3.1 Length: 143 
Range 1: 7 to 137

Score:40.8 bits(94), Expect:4e-04, 
Method:Compositional matrix adjust., 
Identities:36/131(27%), Positives:54/131(41%), Gaps:18/131(13%)

Query  1    YVDGAANRETKLGKAGYVTNRG---RQKVVTLTDTTNQKTELQAIYLALQ--DSGLEVNI  55
            + DGA       G  G +   G   ++   +  +TTN + EL A   AL+       V +
Sbjct  7    FTDGACKGNPGKGGWGALLRMGEHEKEMAGSEKETTNNRMELMAAIRALEALKQPCRVTL  66

Query  56   VTDSQYAL-------------GIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDS+Y L             G   A     ++E + + +   ++  KV   WV  H G 
Sbjct  67   HTDSKYVLDGITKWIFGWQKKGWKTADNKPVKNEDLWRALVDAVRPHKVEWVWVKGHDGH  126

Query  103  GGNEQVDKLVS  113
              NE+VDKL S
Sbjct  127  PENERVDKLAS  137



>RecName: Full=Ribonuclease H; Short=RNase H [Methylorubrum extorquens PA1]
Sequence ID: A9W185.1 Length: 228 
Range 1: 43 to 145

Score:40.4 bits(93), Expect:8e-04, 
Method:Compositional matrix adjust., 
Identities:30/103(29%), Positives:47/103(45%), Gaps:14/103(13%)

Query  32   TTNQKTELQAIYLALQ--DSGLEVNIVTDSQYALGII-------QAQPDQSESELVNQI-  81
            TTN + EL A   AL+    G  + +  DSQY +  +       +A+  ++ +  V  I 
Sbjct  43   TTNNRMELTAAIRALEHFPEGAAIEMRCDSQYVVKSVTEWMRGWKARGWRTATGPVKNID  102

Query  82   ----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL  120
                ++ L     V   WV  H G  GNE+ D+L + G R+ L
Sbjct  103  LMQRLDALAAARDVRWTWVRGHAGEAGNERADRLATLGRREAL  145



>RecName: Full=Ribonuclease H; Short=RNase H [Bordetella bronchiseptica RB50]
Sequence ID: Q7WCJ8.1 Length: 155 
Range 1: 16 to 149

Score:40.0 bits(92), Expect:8e-04, 
Method:Compositional matrix adjust., 
Identities:34/134(25%), Positives:54/134(40%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTL---TDTTNQKTELQAIYLALQ--DSGLEVNI  55
            + DGA       G  G +   G+ +         TTN + EL A+   L+       V I
Sbjct  16   WTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTI  75

Query  56   VTDSQYAL-------------GIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY +             G   A     ++  + Q +++ + + +V   WV  H G 
Sbjct  76   HTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGD  135

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L + G+
Sbjct  136  PGNERADALANQGV  149



>RecName: Full=Ribonuclease H; Short=RNase H [Bordetella pertussis Tohama I]
Sequence ID: Q7VRX8.1 Length: 155 
Range 1: 16 to 149

Score:39.7 bits(91), Expect:0.001, 
Method:Compositional matrix adjust., 
Identities:34/134(25%), Positives:54/134(40%), Gaps:18/134(13%)

Query  1    YVDGAANRETKLGKAGYVTNRGRQKVVTL---TDTTNQKTELQAIYLALQ--DSGLEVNI  55
            + DGA       G  G +   G+ +         TTN + EL A+   L+       V I
Sbjct  16   WTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTI  75

Query  56   VTDSQYAL-------------GIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGI  102
             TDSQY +             G   A     ++  + Q +++ + + +V   WV  H G 
Sbjct  76   HTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGD  135

Query  103  GGNEQVDKLVSAGI  116
             GNE+ D L + G+
Sbjct  136  PGNERADALANQGM  149



>RecName: Full=Ribonuclease H; Short=RNase H [Saccharopolyspora erythraea NRRL 2338]
Sequence ID: A4FMU3.1 Length: 155 
Range 1: 14 to 148

Score:39.7 bits(91), Expect:0.001, 
Method:Compositional matrix adjust., 
Identities:40/135(30%), Positives:55/135(40%), Gaps:20/135(14%)

Query  1    YVDGAANRETKLGKAGYVTNRG---RQKVVTLTDTTNQKTELQAI---YLALQDSGLEVN  54
            Y DGA +     G  G V   G   R+     T TTN K EL A+     AL      V 
Sbjct  14   YTDGACSGNPGPGGWGVVLRYGHHEREMYGGETATTNNKMELTAVIEGLAALTRPVPLVR  73

Query  55   IVTDSQYAL-GIIQ-------------AQPDQSESELVNQIIEQLIKKEKVYLAWVPAHK  100
            I TDS Y L GI +             A+     ++L  ++ ++  +  ++   WV  H 
Sbjct  74   IHTDSTYVLKGITEWMRGWKRNGWLTSAKQPVKNADLWRRLDQECGRHGEITWEWVKGHA  133

Query  101  GIGGNEQVDKLVSAG  115
            G   NE+ DKL   G
Sbjct  134  GHPENERADKLACKG  148



>RecName: Full=Ribonuclease H; Short=RNase H [Hydrogenovibrio crunogenus XCL-2]
Sequence ID: Q31H49.1 Length: 145 
Range 1: 40 to 137

Score:38.5 bits(88), Expect:0.003, 
Method:Compositional matrix adjust., 
Identities:29/98(30%), Positives:45/98(45%), Gaps:15/98(15%)

Query  31   DTTNQKTELQAIYLALQ--DSGLEVNIVTDSQYAL-GIIQAQPDQSESEL----------  77
            DTTN + EL A    L+      +V + TDSQY   GI Q   +  ++            
Sbjct  40   DTTNNRMELTAAIEGLKALKRPCKVTLTTDSQYVKNGITQWMTNWKKNNWKTAAKKPVKN  99

Query  78   --VNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS  113
              + Q +++ ++   V  AWV  H G   NE+VD+L +
Sbjct  100  KDLWQALDEALQPHDVTWAWVKGHSGHDENERVDELAN  137