RID: 9S4Z66M201N Job Title:Q9P9H1:RecName: Full=DNA primase small subunit... Program: BLASTP Query: RecName: Full=DNA primase small subunit PriS; AltName: Full=DNA primase 41 kDa subunit; Short=p41 [Pyrococcus furiosus DSM 3638] ID: Q9P9H1.1(amino acid) Length: 347 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=DNA primase small subunit PriS; AltName: Full=DN... Pyrococcus f... NA 186497 706 706 100% 0.0 100.00 347 Q9P9H1.1 RecName: Full=DNA primase small subunit PriS; AltName: Full=DN... Pyrococcus a... NA 272844 582 582 98% 0.0 79.53 345 Q9V292.1 RecName: Full=DNA primase small subunit PriS; AltName: Full=DN... Pyrococcus h... NA 70601 581 581 99% 0.0 79.36 346 O57934.1 RecName: Full=DNA primase small subunit PriS [Thermococcus... Thermococcus... NA 69014 485 485 98% 3e-172 67.54 346 Q5JJ72.1 RecName: Full=DNA primase small subunit PriS [Thermococcus... Thermococcus... NA 604354 478 478 99% 2e-169 64.53 342 C6A5C2.1 RecName: Full=DNA primase small subunit PriS [Thermococcus... Thermococcus... NA 523850 474 474 98% 4e-168 67.35 346 B6YV39.1 RecName: Full=DNA primase small subunit PriS [Methanosphaera... Methanosphae... NA 339860 231 231 93% 1e-72 36.20 324 Q2NI23.1 RecName: Full=DNA primase small subunit PriS [Methanobrevibact... Methanobrevi... NA 420247 226 226 94% 6e-71 37.76 324 A5UJA2.1 RecName: Full=DNA primase small subunit PriS... Methanotherm... NA 187420 221 221 93% 8e-69 37.20 323 O26685.1 RecName: Full=DNA primase small subunit PriS [Pyrobaculum... Pyrobaculum ... NA 410359 104 104 89% 2e-24 28.34 312 A3MUU9.1 RecName: Full=DNA primase small subunit PriS [Pyrobaculum... Pyrobaculum ... NA 340102 103 103 87% 5e-24 29.52 312 A4WLS1.1 RecName: Full=DNA primase small subunit PriS [Pyrobaculum... Pyrobaculum ... NA 444157 102 102 83% 7e-24 28.23 312 B1YAF6.1 RecName: Full=DNA primase small subunit PriS [Halorubrum... Halorubrum l... NA 416348 103 103 82% 2e-23 28.99 387 B9LPT9.1 RecName: Full=DNA primase small subunit PriS [Pyrobaculum... Pyrobaculum ... NA 178306 99.8 99.8 83% 9e-23 28.04 312 Q8ZTY1.1 RecName: Full=DNA primase small subunit PriS [Archaeoglobus... Archaeoglobu... NA 224325 97.4 97.4 93% 9e-22 30.93 335 O29516.2 RecName: Full=DNA primase small subunit PriS [Pyrobaculum... Pyrobaculum ... NA 384616 97.1 97.1 43% 1e-21 38.46 312 A1RRN3.1 RecName: Full=DNA primase small subunit PriS [Methanosphaerula... Methanosphae... NA 521011 89.0 89.0 90% 1e-18 27.99 378 B8GGQ0.1 RecName: Full=DNA primase small subunit PriS [Natronomonas... Natronomonas... NA 348780 88.6 88.6 84% 2e-18 29.05 393 Q3IP66.1 RecName: Full=DNA primase small subunit PriS [Methanosarcina... Methanosarci... NA 192952 85.1 85.1 85% 4e-17 28.16 414 Q8PVZ4.1 RecName: Full=DNA primase small subunit PriS [Methanoregula... Methanoregul... NA 456442 83.2 83.2 87% 1e-16 27.91 374 A7I9Q9.1 RecName: Full=DNA primase small subunit PriS [Methanococcoides... Methanococco... NA 259564 82.0 82.0 87% 3e-16 27.98 390 Q12W69.1 RecName: Full=DNA primase small subunit PriS [Picrophilus... Picrophilus ... NA 263820 81.6 81.6 88% 4e-16 28.17 370 Q6L0W5.1 RecName: Full=DNA primase small subunit PriS [Methanosarcina... Methanosarci... NA 269797 80.5 80.5 85% 1e-15 26.76 414 Q46C74.1 RecName: Full=DNA primase small subunit PriS [Haloarcula... Haloarcula m... NA 272569 79.0 79.0 86% 5e-15 25.30 392 Q5V554.1 RecName: Full=DNA primase small subunit PriS [Thermoplasma... Thermoplasma... NA 273116 76.6 76.6 94% 2e-14 26.63 333 Q979L5.1 RecName: Full=DNA primase small subunit PriS [Thermoplasma... Thermoplasma... NA 273075 76.3 76.3 79% 2e-14 27.40 322 Q9HJJ2.1 RecName: Full=DNA primase small subunit PriS [Methanothrix... Methanothrix... NA 349307 76.6 76.6 84% 3e-14 26.67 395 A0B688.1 RecName: Full=DNA primase small subunit PriS [Methanospirillum... Methanospiri... NA 323259 74.3 74.3 87% 1e-13 24.55 388 Q2FPD1.1 RecName: Full=DNA primase small subunit PriS [Methanosarcina... Methanosarci... NA 188937 73.9 73.9 85% 2e-13 26.12 414 Q8TSZ5.1 RecName: Full=DNA primase small subunit PriS [Staphylothermus... Staphylother... NA 399550 70.5 70.5 73% 3e-12 26.13 377 A3DM85.1 RecName: Full=DNA primase small subunit PriS [Methanocella... Methanocella... NA 351160 68.2 68.2 53% 2e-11 29.74 400 Q0W8M0.1 RecName: Full=DNA primase small subunit PriS [Halobacterium... Halobacteriu... NA 478009 67.4 67.4 85% 3e-11 24.62 391 B0R5P1.1 RecName: Full=DNA primase small subunit PriS [Methanocorpuscul... Methanocorpu... NA 410358 67.4 67.4 85% 3e-11 24.84 380 A2ST15.1 RecName: Full=DNA primase small subunit PriS [Methanocaldococc... Methanocaldo... NA 243232 67.0 67.0 86% 3e-11 27.64 350 Q58249.2 RecName: Full=DNA primase small subunit PriS [Nitrosopumilus... Nitrosopumil... NA 436308 66.6 66.6 82% 5e-11 24.61 373 A9A557.1 RecName: Full=DNA primase small subunit PriS [Cenarchaeum... Cenarchaeum ... NA 414004 62.4 62.4 81% 1e-09 25.99 372 A0RYW9.1 RecName: Full=DNA primase small subunit PriS [Hyperthermus... Hyperthermus... NA 415426 58.2 58.2 70% 3e-08 24.54 380 A2BN97.1 RecName: Full=DNA primase small subunit PriS [Sulfurisphaera... Sulfurisphae... NA 273063 53.9 53.9 47% 5e-07 28.12 318 Q973F6.2 RecName: Full=DNA primase small subunit; AltName: Full=DNA... Homo sapiens human 9606 53.5 53.5 42% 1e-06 29.94 420 P49642.1 RecName: Full=DNA primase small subunit PriS [Methanococcus... Methanococcu... NA 267377 52.8 52.8 87% 1e-06 22.81 357 Q6M146.1 RecName: Full=DNA primase small subunit PriS [Methanococcus... Methanococcu... NA 426368 50.1 50.1 87% 1e-05 23.44 363 A6VI60.1 RecName: Full=DNA primase small subunit; AltName: Full=DNA... Mus musculus house mouse 10090 48.1 48.1 36% 6e-05 29.41 417 P20664.1 RecName: Full=Uncharacterized DNA primase small subunit-like... Archaeoglobu... NA 224325 47.4 47.4 47% 8e-05 27.72 280 O27986.1 RecName: Full=DNA primase small subunit PriS [Sulfolobus... Sulfolobus i... NA 429572 47.0 91.3 62% 1e-04 26.82 330 C3MPG7.1 RecName: Full=DNA primase small subunit PriS [Sulfolobus... Sulfolobus i... NA 427317 47.0 90.5 62% 1e-04 26.82 330 C3MYF5.1 RecName: Full=DNA primase small subunit PriS [Sulfolobus... Sulfolobus i... NA 426118 47.0 90.5 62% 1e-04 26.82 330 C4KGQ2.1 RecName: Full=DNA primase small subunit PriS [Aeropyrum pernix... Aeropyrum pe... NA 272557 47.0 47.0 90% 1e-04 24.21 342 Q9YEZ8.2 RecName: Full=DNA primase small subunit PriS [Sulfolobus... Sulfolobus i... NA 439386 46.6 90.9 62% 2e-04 26.82 330 C3NDP7.1 RecName: Full=DNA primase small subunit PriS [Methanococcus... Methanococcu... NA 444158 46.2 46.2 36% 2e-04 26.09 357 A9A8L9.1 RecName: Full=DNA primase small subunit PriS [Saccharolobus... Saccharolobu... NA 273057 45.8 45.8 41% 2e-04 27.12 330 Q97Z83.1 RecName: Full=DNA primase small subunit PriS [Methanococcus... Methanococcu... NA 402880 45.1 45.1 36% 6e-04 26.09 357 A4G0B9.1 RecName: Full=DNA primase small subunit PriS [Sulfolobus... Sulfolobus a... NA 330779 44.7 44.7 41% 6e-04 26.35 322 Q4J9B0.1 RecName: Full=DNA primase small subunit; AltName: Full=DNA... Plasmodium f... NA 5839 43.1 43.1 73% 0.002 23.45 452 Q25998.1 RecName: Full=DNA primase small subunit PriS [Methanopyrus... Methanopyrus... NA 190192 40.8 40.8 24% 0.009 37.36 296 Q8TXS4.2 Alignments: >RecName: Full=DNA primase small subunit PriS; AltName: Full=DNA primase 41 kDa subunit; Short=p41 [Pyrococcus furiosus DSM 3638] Sequence ID: Q9P9H1.1 Length: 347 Range 1: 1 to 347 Score:706 bits(1821), Expect:0.0, Method:Compositional matrix adjust., Identities:347/347(100%), Positives:347/347(100%), Gaps:0/347(0%) Query 1 MLMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLE 60 MLMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLE Sbjct 1 MLMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLE 60 Query 61 DYIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLED 120 DYIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLED Sbjct 61 DYIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLED 120 Query 121 AKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIE 180 AKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIE Sbjct 121 AKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIE 180 Query 181 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE 240 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE Sbjct 181 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE 240 Query 241 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK 300 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK Sbjct 241 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK 300 Query 301 VGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRESLEYE 347 VGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRESLEYE Sbjct 301 VGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRESLEYE 347 >RecName: Full=DNA primase small subunit PriS; AltName: Full=DNA primase 41 kDa subunit; Short=Pabp41; Short=p41 [Pyrococcus abyssi GE5] Sequence ID: Q9V292.1 Length: 345 Range 1: 1 to 342 Score:582 bits(1499), Expect:0.0, Method:Compositional matrix adjust., Identities:272/342(80%), Positives:311/342(90%), Gaps:0/342(0%) Query 1 MLMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLE 60 ML+REVTKEER EFYS EW+AK+IP FI+ L+ REFGFDH GEGPSDRKN Y+D+RDLE Sbjct 1 MLLREVTKEERKEFYSNEWNAKQIPDFILQNLDKREFGFDHTGEGPSDRKNSYTDVRDLE 60 Query 61 DYIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLED 120 DYI+AT+PYAVYSSVAFYE P+EMEGW GAELVFDIDAKDLPL+RCNHEPG VCPICL D Sbjct 61 DYIKATAPYAVYSSVAFYEKPQEMEGWLGAELVFDIDAKDLPLRRCNHEPGKVCPICLND 120 Query 121 AKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIE 180 AKE+A+DTLI+L+EELGFE++HVVYSGRGYHIR++D WAL LDSKSRERIL+FISASEIE Sbjct 121 AKEIARDTLIVLKEELGFEDVHVVYSGRGYHIRVMDGWALSLDSKSRERILSFISASEIE 180 Query 181 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE 240 + EFR+ LLE+RGWFVL HGYPRVFRLR GYFILRV V HL++ GIR+NIAK+ILD+KE Sbjct 181 DHSEFRKMLLERRGWFVLNHGYPRVFRLRFGYFILRVKVEHLINFGIRKNIAKRILDNKE 240 Query 241 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK 300 IYE FVRK ILA+FP+GVGIES+AKLFALSTRFSKAYFDGRVTVD+KRILRLPSTLHSK Sbjct 241 TIYEEFVRKGILAAFPDGVGIESLAKLFALSTRFSKAYFDGRVTVDLKRILRLPSTLHSK 300 Query 301 VGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRE 342 VGLIA Y+G ER+VM+FNPF+HAVPKFR+KEV+E YK + E Sbjct 301 VGLIAKYIGNNERDVMRFNPFKHAVPKFRRKEVKEEYKRFLE 342 >RecName: Full=DNA primase small subunit PriS; AltName: Full=DNA primase 41 kDa subunit; Short=p41 [Pyrococcus horikoshii OT3] Sequence ID: O57934.1 Length: 346 Range 1: 1 to 344 Score:581 bits(1498), Expect:0.0, Method:Compositional matrix adjust., Identities:273/344(79%), Positives:310/344(90%), Gaps:0/344(0%) Query 1 MLMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLE 60 ML+REVT+EER FY+ EW K IP FIV TLE REFGFDH+GEGPSDRKNQY+DIRDLE Sbjct 1 MLLREVTREERKNFYTNEWKVKDIPDFIVKTLELREFGFDHSGEGPSDRKNQYTDIRDLE 60 Query 61 DYIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLED 120 DYIRAT+PYAVYSSVA YE P+EMEGW G ELVFDIDAKDLPL+RC HEPGTVCPICL D Sbjct 61 DYIRATAPYAVYSSVALYEKPQEMEGWLGTELVFDIDAKDLPLRRCEHEPGTVCPICLND 120 Query 121 AKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIE 180 AKE+ +DT+IILREELGF +IH++YSGRGYHIR+LDEWAL+LDSKSRERIL+F+SASEIE Sbjct 121 AKEIVRDTVIILREELGFNDIHIIYSGRGYHIRVLDEWALKLDSKSRERILSFVSASEIE 180 Query 181 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE 240 +VEEFR+ LL KRGWFVL HGYPR FRLR GYFILR+ +PHL++ GIR++IAK IL KE Sbjct 181 DVEEFRKLLLNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGIRKSIAKSILKSKE 240 Query 241 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK 300 EIYE FVRKAILA+FP+GVGIES+AKLFALSTRFSK+YFDGRVTVD+KRILRLPSTLHSK Sbjct 241 EIYEEFVRKAILAAFPQGVGIESLAKLFALSTRFSKSYFDGRVTVDLKRILRLPSTLHSK 300 Query 301 VGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRESL 344 VGLIA YVGT ER+VM+FNPF+HAVPKFRK+EV+ YK + ESL Sbjct 301 VGLIAKYVGTNERDVMRFNPFKHAVPKFRKEEVKVEYKKFLESL 344 >RecName: Full=DNA primase small subunit PriS [Thermococcus kodakarensis KOD1] Sequence ID: Q5JJ72.1 Length: 346 Range 1: 4 to 342 Score:485 bits(1248), Expect:3e-172, Method:Compositional matrix adjust., Identities:233/345(68%), Positives:290/345(84%), Gaps:10/345(2%) Query 2 LMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLED 61 L+REVT EER +YS EW AKK+P+FIV+++E REFGFDH GEGPSDRKN +SD+RDLED Sbjct 4 LLREVTPEERRLYYSGEWDAKKLPEFIVESIERREFGFDHTGEGPSDRKNAFSDVRDLED 63 Query 62 YIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCN--HEPGTVCPICLE 119 YIRAT+PYA YSSVAFY NP+EMEGW GAELVFDIDAKDLPL+RC H G VCPICLE Sbjct 64 YIRATAPYAAYSSVAFYRNPQEMEGWLGAELVFDIDAKDLPLRRCQNEHPSGQVCPICLE 123 Query 120 DAKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEI 179 DAKELA+DTLIIL+E+ GFENIHVVYSGRGYHIR++DEWAL+LDSK+RERIL+++SA+E Sbjct 124 DAKELARDTLIILKEDFGFENIHVVYSGRGYHIRVIDEWALKLDSKARERILSYVSAAEE 183 Query 180 ENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHK 239 ++ ++KR + +L GY RVFRLR GYFI R+N HL +IG++R+ A+K+LD K Sbjct 184 VTFDD-----IQKR-YIMLSSGYFRVFRLRFGYFIQRINENHLKNIGLKRSTAEKLLDEK 237 Query 240 --EEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTL 297 ++I E FV K +LA+FPEGVG ++ +LF LST FSKAYFDGRVTVD+KRILRLPSTL Sbjct 238 TRQDIVEKFVNKGLLAAFPEGVGYRTLLRLFGLSTTFSKAYFDGRVTVDLKRILRLPSTL 297 Query 298 HSKVGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRE 342 HSKVGL+ATY+G+ E+ + KF+PF+ AVP+FRK+EV++AY+ W+E Sbjct 298 HSKVGLVATYIGSDEKRLEKFDPFKDAVPEFRKEEVQKAYQEWKE 342 >RecName: Full=DNA primase small subunit PriS [Thermococcus sibiricus MM 739] Sequence ID: C6A5C2.1 Length: 342 Range 1: 4 to 341 Score:478 bits(1229), Expect:2e-169, Method:Compositional matrix adjust., Identities:222/344(65%), Positives:287/344(83%), Gaps:6/344(1%) Query 2 LMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLED 61 L +E+TKEER +Y KEW+ KKIP FI TLE+REFGFDH GEGP+DRKN + I+DLED Sbjct 4 LFKEMTKEERKIYYLKEWNVKKIPSFITKTLENREFGFDHTGEGPNDRKNVFHHIKDLED 63 Query 62 YIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDA 121 Y++ T+PY++YSSVA YE P+ MEGW GAELVFDIDAKDLPLKRCNHE G VCPICL+DA Sbjct 64 YVKITAPYSIYSSVALYEEPKNMEGWLGAELVFDIDAKDLPLKRCNHETGKVCPICLDDA 123 Query 122 KELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIEN 181 KEL KDTL+ILRE+ GFENIH++YSGRGYHIR+LD+WAL LDSK+RE+IL++IS++E Sbjct 124 KELTKDTLLILREDFGFENIHLIYSGRGYHIRVLDDWALGLDSKAREKILSYISSAEEIT 183 Query 182 VEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEE 241 E+ L E++ +L GY RVFRLR GYFI RV+ HL +IG+ + ++I+D ++E Sbjct 184 FED----LQERK--ILLSSGYYRVFRLRFGYFIKRVSEYHLRNIGLNKRQIEQIIDGRDE 237 Query 242 IYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKV 301 IYE FV+KA++++F +GVG +++ +LF+LST FSKAYFDGRVTVD+KRILR+PS+LHSKV Sbjct 238 IYENFVKKAMISAFSQGVGYKTLLRLFSLSTTFSKAYFDGRVTVDVKRILRVPSSLHSKV 297 Query 302 GLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRESLE 345 GL+ATY+G E+++ KFNPF+ AVPKFR+KEV+EAY LW+E++E Sbjct 298 GLVATYIGNDEKDLEKFNPFKDAVPKFREKEVKEAYDLWKETME 341 >RecName: Full=DNA primase small subunit PriS [Thermococcus onnurineus NA1] Sequence ID: B6YV39.1 Length: 346 Range 1: 4 to 340 Score:474 bits(1221), Expect:4e-168, Method:Compositional matrix adjust., Identities:231/343(67%), Positives:289/343(84%), Gaps:8/343(2%) Query 2 LMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLED 61 L REVTKEER +Y EW+AKK+P+F+V+ LE+REFGFDH GEGPSDRKN + D+RDLED Sbjct 4 LFREVTKEERVLYYKAEWNAKKLPRFLVEKLENREFGFDHTGEGPSDRKNVFMDVRDLED 63 Query 62 YIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNH--EPGTVCPICLE 119 YI+AT+PYA+YSSVA YE+P+ M GW GAELVFDIDAKDLPL+RC H E G VCPICL Sbjct 64 YIKATAPYAIYSSVALYEDPKGMSGWLGAELVFDIDAKDLPLRRCGHIHEHGKVCPICLG 123 Query 120 DAKELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEI 179 DAKELA+DTL+IL+E+ GFE++HVVYSGRGYHIR+LD+WA+QLDSKSRE+ILA+ISA+E Sbjct 124 DAKELARDTLVILKEDFGFEDVHVVYSGRGYHIRVLDDWAIQLDSKSREKILAYISAAEE 183 Query 180 ENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHK 239 E+ ++ R +L GY RVFRLR GYFI R N HLL+IG+R+ KKIL+ + Sbjct 184 VTFED-----IQSRK-IMLSSGYFRVFRLRFGYFIARANENHLLNIGLRKGQVKKILESR 237 Query 240 EEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHS 299 +EIYEGFVRK +L +FP+G+G +++A+LFALS+ FSKAYFDGRVTVD+KRILR+PS+LHS Sbjct 238 DEIYEGFVRKGLLTAFPQGIGYKTLARLFALSSTFSKAYFDGRVTVDVKRILRVPSSLHS 297 Query 300 KVGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVREAYKLWRE 342 KVGL+ATY+G+ ER++ KFNPFR AVPKFR++EV+EAY+ W E Sbjct 298 KVGLVATYIGSDERKLEKFNPFRDAVPKFREEEVKEAYEEWLE 340 >RecName: Full=DNA primase small subunit PriS [Methanosphaera stadtmanae DSM 3091] Sequence ID: Q2NI23.1 Length: 324 Range 1: 5 to 318 Score:231 bits(588), Expect:1e-72, Method:Compositional matrix adjust., Identities:118/326(36%), Positives:188/326(57%), Gaps:12/326(3%) Query 3 MREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDY 62 ++ +K ER FY +EW+ K +P FI ++L SREFGFDH G GP+DR + D L+ + Sbjct 5 LKPASKYERKIFYKEEWNVKDVPDFIRNSLTSREFGFDHYGNGPNDRYKVFVDDLRLKRF 64 Query 63 IRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAK 122 I+ P+A Y SVAFY+ P + +GW+ +ELVFD+DAKD+P++ C+ G VC CL AK Sbjct 65 IKVKQPFAAYCSVAFYDKPNQRKGWQKSELVFDVDAKDIPIRTCDCAEGEVCEKCLNQAK 124 Query 123 ELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIENV 182 E+ +L + G NI+++YSGRGYH+R+LDE + S+ R I+ +++ S++ ++ Sbjct 125 EIVLMIRDVLSGDFGLTNINLIYSGRGYHVRVLDEDVMDASSELRGDIIQYVTGSKLPDL 184 Query 183 EEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEI 242 + F++ GYP+ F Y IL + L + + + +L H+ Sbjct 185 SN--EYGFNDLQPFIIPFGYPKNFTRWSKYTILHLRRSSKLD-DVNNQLLRDVLKHR--- 238 Query 243 YEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVG 302 +++ + F +G K+ +R + D +V++D+KRILRLPSTLHSKV Sbjct 239 --NLLQEDLWGMFRSNIGPIRYKKVMNAISRINMQITDTKVSIDLKRILRLPSTLHSKVS 296 Query 303 LIATYVGTKEREVMKFNPFRHAVPKF 328 + +T + + + F+PF AVPKF Sbjct 297 MKSTLI----KNIETFDPFDDAVPKF 318 >RecName: Full=DNA primase small subunit PriS [Methanobrevibacter smithii ATCC 35061] Sequence ID: A5UJA2.1 Length: 324 Range 1: 1 to 318 Score:226 bits(577), Expect:6e-71, Method:Compositional matrix adjust., Identities:125/331(38%), Positives:187/331(56%), Gaps:17/331(5%) Query 2 LMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLED 61 + + T +ER ++Y +EWS K +P FI+ L+ REFGFDHNG+GP+DR + L+ Sbjct 1 MFSKATLKERRQYYREEWSTKDMPDFILKDLKKREFGFDHNGKGPNDRYKVFRGSESLKK 60 Query 62 YIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDA 121 ++R +P+A Y SVAFY NPR E W+ AE +FD+DAKD+P++ C + VC +CL A Sbjct 61 FLRYKAPFAAYISVAFYNNPRRREDWQKAEYIFDVDAKDIPIRSC--QCDGVCEVCLGQA 118 Query 122 KELAKDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIEN 181 E+ + L+++LG NIH+VYSGRGYHIRILDE + S+ R +L +++ +E+ Sbjct 119 LEIVNSLIDTLQDDLGLNNIHLVYSGRGYHIRILDEEMMTSGSELRSEVLKYVAGAEVPK 178 Query 182 VEEFRRFLLEKR---GWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDH 238 F + K F + GY ++F +L Y N+ HL+ I K++ Sbjct 179 SNFFNPDISNKSFNFEHFSIPVGYSKIFTDKLKY-----NIQHLVGNEELDEINPKLM-- 231 Query 239 KEEI-YEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTL 297 K+ I Y + F +G L R + + D +V++D+KRILRLPS+L Sbjct 232 KDIIKYRHHLDNDNWGYFKRDIGPRRYKNLTEAMARVNLSTIDAKVSIDLKRILRLPSSL 291 Query 298 HSKVGLIATYVGTKEREVMKFNPFRHAVPKF 328 HSKV + V +E F+P + AVPKF Sbjct 292 HSKVSMKCMEVKNRE----TFDPLQEAVPKF 318 >RecName: Full=DNA primase small subunit PriS [Methanothermobacter thermautotrophicus str. Delta H] Sequence ID: O26685.1 Length: 323 Range 1: 8 to 318 Score:221 bits(563), Expect:8e-69, Method:Compositional matrix adjust., Identities:122/328(37%), Positives:182/328(55%), Gaps:22/328(6%) Query 6 VTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRA 65 T ER +Y +EW+ + +P FI D L REFGFDHNG GPSDR + D R L ++R Sbjct 8 ATPLERKRYYREEWNVRDLPDFIADNLHMREFGFDHNGRGPSDRYRVFRDERSLARFMRV 67 Query 66 TSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELA 125 P+A YSSVAFY P + +GW+ +EL+FD+DAKDLP++ C E VCP CL++A+EL Sbjct 68 RYPFAAYSSVAFYREPWKRKGWQRSELIFDVDAKDLPVRSC--ECDGVCPTCLDEARELV 125 Query 126 KDTLIILREELGFENIHVVYSGRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEF 185 + L+ +LG +IHV+YSGRGYH+R+LD ++L S+ R IL + + + E Sbjct 126 LMMVDTLKGDLGLGDIHVIYSGRGYHVRVLDPEVMELGSEVRAEILRYTAGA-----REP 180 Query 186 RRFLLEKRGWFVLKH-----GYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE 240 RR + + ++H GY RVF R + +L + + R + + + Sbjct 181 RRKFTDGVSSYEMEHFSIPLGYHRVFTERARHVLLHLRGDEDIEDVTARTVKTAVRNR-- 238 Query 241 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK 300 + + F +G +L ++ + D +VT+D+KRILRLP++LHSK Sbjct 239 ----NLILEDRWGEFRSVIGPRVYPRLVKGISKINMRMLDAKVTIDLKRILRLPTSLHSK 294 Query 301 VGLIATYVGTKEREVMKFNPFRHAVPKF 328 V +I V E F+P + AVP+F Sbjct 295 VSMICMEVKNPE----TFDPLKSAVPRF 318 >RecName: Full=DNA primase small subunit PriS [Pyrobaculum calidifontis JCM 11548] Sequence ID: A3MUU9.1 Length: 312 Range 1: 16 to 268 Score:104 bits(259), Expect:2e-24, Method:Compositional matrix adjust., Identities:89/314(28%), Positives:137/314(43%), Gaps:66/314(21%) Query 26 KFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP---- 81 K VD +E REF F G R + ++ +L+ ++ +P VY S A YE P Sbjct 16 KLEVDEVEKREFAF-QPFVGGMVRHKAFKNLEELKRHLVEKTPRHVYYSTARYERPWEED 74 Query 82 REMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENI 141 E +GW GA+LVFDID L + C E V CLEDAKE A + +L EELG + Sbjct 75 MERKGWLGADLVFDIDGDHLDTEACR-ESKVVSLACLEDAKEEANKLIDVLTEELGLKPT 133 Query 142 HVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLKH 200 VV+SG RG+H+ ++DE L L K R ++ ++ A + Sbjct 134 KVVFSGNRGFHVHVVDEEVLALGQKERRELVNYLKAVGFD-------------------- 173 Query 201 GYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFPEGVG 260 P F +++G +K++ ++EE +R PE + Sbjct 174 --PSKFHMKVG--------------------RRKVVLYEEEAVGNLLRIRRGIEDPEALK 211 Query 261 IESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNP 320 +E D VT D+ R++R P +L+ K GL+A + ++ E + Sbjct 212 VE----------------VDEVVTQDVHRLIRAPGSLNGKTGLVALPLSVRDLEKEVAHI 255 Query 321 FRHAVPKFRKKEVR 334 A+ FRK +R Sbjct 256 VERAIA-FRKGNLR 268 >RecName: Full=DNA primase small subunit PriS [Pyrobaculum arsenaticum DSM 13514] Sequence ID: A4WLS1.1 Length: 312 Range 1: 16 to 270 Score:103 bits(256), Expect:5e-24, Method:Compositional matrix adjust., Identities:93/315(30%), Positives:133/315(42%), Gaps:71/315(22%) Query 26 KFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREME 85 KF V ++E REF F G G R ++ + +L YI +P +Y SVA+YE P E + Sbjct 16 KFDVVSVERREFAFQPFGGGMV-RHKSFNSVDELRRYIVEKTPKHIYHSVAYYERPGEED 74 Query 86 ----GWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENI 141 GW GA+LVFDID L + C V CLEDAKE + IL EL Sbjct 75 MDRKGWLGADLVFDIDGDHLNTEACKGS-AVVSLRCLEDAKEETNKLIDILVRELDLRPT 133 Query 142 HVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLKH 200 +V+SG RG+HI I E L+L +K R ++ FI + Sbjct 134 RIVFSGNRGFHIHITSEEVLKLGTKERREVVNFIKGVGFD-------------------- 173 Query 201 GYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFPEGVG 260 P F ++LG +++ ++EE +R P+ + Sbjct 174 --PSRFEVKLG--------------------RRRVKLYEEEPVGSLLRVRQAVENPDTLR 211 Query 261 IESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKERE------ 314 +E D VT DI R++RLP +L+ K GL+A + K+ E Sbjct 212 VE----------------IDEVVTQDIHRLIRLPGSLNGKTGLVAMPLELKDLERGVENI 255 Query 315 VMKFNPFRHAVPKFR 329 V + FR KFR Sbjct 256 VERAIAFRKGNLKFR 270 >RecName: Full=DNA primase small subunit PriS [Pyrobaculum neutrophilum V24Sta] Sequence ID: B1YAF6.1 Length: 312 Range 1: 16 to 249 Score:102 bits(255), Expect:7e-24, Method:Compositional matrix adjust., Identities:83/294(28%), Positives:127/294(43%), Gaps:65/294(22%) Query 26 KFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREME 85 KF VD +E REF F G G R + + +L + +P +Y S A+YE P E + Sbjct 16 KFDVDAVEKREFAFQPFGGGMV-RHKAFKSVEELRRFAVEKTPRHMYHSSAYYERPDEGD 74 Query 86 ----GWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENI 141 GW GA+L+FDID L + C E V CL DA+E A L +L ELG + Sbjct 75 MERKGWLGADLIFDIDGDHLDTEAC-RESKLVSIACLNDAREEANKLLDVLTRELGLKPR 133 Query 142 HVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLKH 200 +V+SG RG+H+ + DE L L ++ R ++ ++ A+ + Sbjct 134 RIVFSGNRGFHVHVADEEVLALGARERRELVNYLKAAGFD-------------------- 173 Query 201 GYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFPEGVG 260 P F +LG +K+L ++EE+ +R P + Sbjct 174 --PTRFAAKLG--------------------RRKVLLYEEEVEGNLLRIRQGVEDPRALK 211 Query 261 IESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKERE 314 +E D VT DI R++RLP +L+ K GL A + ++ E Sbjct 212 VE----------------IDEVVTQDIHRLIRLPGSLNGKTGLAALPLTQQDLE 249 >RecName: Full=DNA primase small subunit PriS [Halorubrum lacusprofundi ATCC 49239] Sequence ID: B9LPT9.1 Length: 387 Range 1: 48 to 342 Score:103 bits(256), Expect:2e-23, Method:Compositional matrix adjust., Identities:89/307(29%), Positives:142/307(46%), Gaps:33/307(10%) Query 49 RKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP----REMEGWRGAELVFDIDAKDLPLK 104 R D+ D++ + +P Y S A Y++P +GWR A+LVFD+DA LP Sbjct 48 RHQSLYDLGDVDTFFADNAPRHAYFSAARYDDPGASTMSQKGWRSADLVFDLDADHLPGV 107 Query 105 RCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYS-GRGYHIRILDEWALQLD 163 + T P L + K+ L L ++ F+++ VV+S GRGYH+ + DE +LD Sbjct 108 DPD---ATSYPEMLAECKQALLRLLDFLEDDFSFDDLTVVFSGGRGYHVHVRDESVRELD 164 Query 164 SKSRERILAFISASEIE------NVEE---FRRFLLEKRGWFVLKHGYPRVFRLRLGYFI 214 S++R ++ ++ A +++ V E +R L + GW H + L Sbjct 165 SEARREVVDYVRAIDLDTEGLIRTVSERGTTKRVLRTEGGWGARVHEALIEYADDLREMD 224 Query 215 LRVNVPHLLSI-GIRRNIAKKILD----HKEEIYEGFVRKAILASFPEGVGIESM-AKLF 268 L+ + GI A+ IL + + EG V G G+ + + L Sbjct 225 AEDARERLMELDGIGEGRAETILGAFDRNPTAVREGNVEAG-------GPGVRRLVSALA 277 Query 269 ALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNPFRHAVP-K 327 A T A D VT D +R++RLP TLH GL+ T + ++ F+P R AVP + Sbjct 278 ARVTATDTAPIDEPVTTDTRRLIRLPRTLHGGSGLVVTPI--DRDDLDAFDPLRDAVPDR 335 Query 328 FRKKEVR 334 F +E+R Sbjct 336 FVGREIR 342 >RecName: Full=DNA primase small subunit PriS [Pyrobaculum aerophilum str. IM2] Sequence ID: Q8ZTY1.1 Length: 312 Range 1: 12 to 247 Score:99.8 bits(247), Expect:9e-23, Method:Compositional matrix adjust., Identities:83/296(28%), Positives:128/296(43%), Gaps:65/296(21%) Query 22 KKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP 81 + KF +D ++ REF F G R + + DL ++ +P +Y S A+YE P Sbjct 12 RNFAKFEIDAVDKREFAF-QPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYERP 70 Query 82 RE--ME--GWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELG 137 E ME GW GA+L+FDID L + C E V CLEDA+E A + +L +EL Sbjct 71 GEEDMERKGWIGADLIFDIDGDHLDTEACR-ESKIVSLRCLEDAREEANKLIDVLIQELD 129 Query 138 FENIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWF 196 + +V+SG RG+HI + E ++L S+ R ++ ++ A + Sbjct 130 LKPTRIVFSGNRGFHIHVSSEEVMKLGSRERRELVNYLKAVGFD---------------- 173 Query 197 VLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFP 256 P F +LG +K++ ++EE +R Sbjct 174 ------PSRFIAKLG--------------------RRKVVLYEEEAVGNLLR------IK 201 Query 257 EGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKE 312 +GV R K D VT DI R++R P +L+ K GL+A + KE Sbjct 202 QGVE----------DARAMKVEIDEVVTQDIHRLIRAPGSLNGKTGLVALPISLKE 247 >RecName: Full=DNA primase small subunit PriS [Archaeoglobus fulgidus DSM 4304] Sequence ID: O29516.2 Length: 335 Range 1: 1 to 284 Score:97.4 bits(241), Expect:9e-22, Method:Compositional matrix adjust., Identities:103/333(31%), Positives:153/333(45%), Gaps:57/333(17%) Query 1 MLMREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIR--- 57 ML + K++ E+YSK + ++P+ ++REF F P +++ R Sbjct 1 MLTKLFLKKKFEEYYSK--NEVELPR----KFKNREFAFVPLELLPDFVMHRHISFRSET 54 Query 58 DLEDYIRATSPYAVYSSVAFYENPRE--ME--GWRGAELVFDIDAKDLPLKRCNHEPGTV 113 D YI + P +Y S A+YE P E ME GW GA+L+FDIDA LP+K + E Sbjct 55 DFRAYILSNVPAHIYFSSAYYERPAEDKMENKGWLGADLIFDIDADHLPVKAQSFEK--- 111 Query 114 CPICLEDAKELAKDTLIILREELGFENIHVVYS-GRGYHIRILDEWALQLDSKSRERILA 172 LE AK K +LR + G ++ + +S GRGYH+ + DE L L S R I+ Sbjct 112 ---ALEMAKREIKKLTAVLRADFGIRDMKIYFSGGRGYHVHVHDEEFLSLGSAERREIVD 168 Query 173 FISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIA 232 ++ + + V E R F + RV L Y ++ L+ ++ A Sbjct 169 YLRLNSPKIVVEDR---------FANSNAAKRV----LNYLRKKLEEDERLTSKLKIKPA 215 Query 233 KKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILR 292 D K+ E +K I A +E ALS Y D VT D+KR++R Sbjct 216 ----DLKK---EKLTKKVIRA-------VEKF-DYSALSI-----YIDAPVTADVKRLIR 255 Query 293 LPSTLHSKVGLIATYVGTKEREVMKFNPFRHAV 325 LP +LH K GL T V ++ FNP + A+ Sbjct 256 LPGSLHGKTGLRVTEV----EDIESFNPLKDAL 284 >RecName: Full=DNA primase small subunit PriS [Pyrobaculum islandicum DSM 4184] Sequence ID: A1RRN3.1 Length: 312 Range 1: 16 to 169 Score:97.1 bits(240), Expect:1e-21, Method:Compositional matrix adjust., Identities:60/156(38%), Positives:87/156(55%), Gaps:7/156(4%) Query 26 KFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPRE-- 83 KF +D +E REF F + EG R + + +L+ ++ +P +Y S A+YE P E Sbjct 16 KFDIDAVEKREFAFQYF-EGGIVRHRAFKTLEELKKFVIEKTPRHIYHSSAYYERPGEED 74 Query 84 ME--GWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENI 141 ME GW GA+L+FDID L + C E V CL DAKE A + +L ELG + Sbjct 75 MERKGWLGADLIFDIDGDHLDTEAC-RESKLVSIACLNDAKEEANKLIDVLTGELGLKPR 133 Query 142 HVVYSG-RGYHIRILDEWALQLDSKSRERILAFISA 176 VV+SG RG+HI + +E L L +K R ++ ++ A Sbjct 134 RVVFSGNRGFHIHVSEEEVLTLGAKERRELVNYLKA 169 >RecName: Full=DNA primase small subunit PriS [Methanosphaerula palustris E1-9c] Sequence ID: B8GGQ0.1 Length: 378 Range 1: 7 to 325 Score:89.0 bits(219), Expect:1e-18, Method:Compositional matrix adjust., Identities:96/343(28%), Positives:153/343(44%), Gaps:54/343(15%) Query 13 EFYSKEWSA--KKIPKFIVDTLESREFGF---DHNGEGPSDRKNQYSDIRDLEDYIRATS 67 EF ++++ +++ D L RE+GF D E R + + ++L +Y++ Sbjct 7 EFIKQQFTGYYQRVYPVTPDALLQREWGFIFFDAGREVRMRRHLAFGERQELTEYLKTMV 66 Query 68 PYAVYSSVAFYENP----REMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKE 123 P V+ S A+YE+P +GW GA+L+FD+DA +H L KE Sbjct 67 PAHVFYSSAYYESPGAPTMAEKGWSGADLIFDLDA--------DHIMHGSYQAMLARVKE 118 Query 124 LAKDTLIILREELGFEN--IHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIE 180 + L +L +ELGF VV+SG RGYHI + D S R ++ ++ ++ Sbjct 119 EVQKLLAVLTDELGFSEKYCEVVFSGGRGYHIHVNDLAVRSWGSAERREVVNYVCGIGLD 178 Query 181 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVP-------HLLSI-GIRRNIA 232 L R L G+PR + L ++ + V HL SI G+ R+ A Sbjct 179 PG-------LLIRAGTDLSTGWPRRYLGALDGYLAWLKVKNQKDALLHLSSIKGVSRSSA 231 Query 233 KKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALST----------RFSKAYFDGR 282 +L ++ VR I PE V + + L A++T + + D Sbjct 232 AGLLKSLDQ-----VRATIGGDHPEKVLGDRV--LRAVTTNDNPDWKKRLQETGVQADEP 284 Query 283 VTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNPFRHAV 325 VT DIKR++R+P++LH GL V EV +F+P AV Sbjct 285 VTTDIKRLIRMPTSLHGGSGL--RVVPLTISEVQEFDPLIDAV 325 >RecName: Full=DNA primase small subunit PriS [Natronomonas pharaonis DSM 2160] Sequence ID: Q3IP66.1 Length: 393 Range 1: 31 to 341 Score:88.6 bits(218), Expect:2e-18, Method:Compositional matrix adjust., Identities:95/327(29%), Positives:147/327(44%), Gaps:50/327(15%) Query 35 REFGFDHNGEGPSD--RKNQYSDIR---DLEDYIRATSPYAVYSSVAFYENPRE----ME 85 RE+G+ G+G + R + Y D+ DL ++ P VY S Y++P + Sbjct 31 REWGYITWGDGGTTMVRHHSYLDVTGGGDLGGFLAGERPRHVYFSAGRYDDPGASSMGQK 90 Query 86 GWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVY 145 GWRG++LVFD+DA LP + T LE K L +L E+ GFE + VV+ Sbjct 91 GWRGSDLVFDLDADHLPGIDPSE---TSYAAMLEACKGALSRLLDLLVEDFGFEPLAVVF 147 Query 146 S-GRGYHIRILDEWALQLDSKSRERILAF----------ISASEIENVEEFRRFLLEKRG 194 S GRGYH+ + + L+LD +R I+ + I +++ R +KR Sbjct 148 SGGRGYHVHVRRDDVLELDRTARREIVEYVLGEGLDFDDIVSTQAVAGSAGRSSPAQKR- 206 Query 195 WFVLKHGYPRVFRLRLGYF---ILRVNVPHLLS-----IGIRRNIAKKIL----DHKEEI 242 + G+ R RL +L + L GI AK L +++EE+ Sbjct 207 -TLPDGGWAGRVRTRLTTLFDEVLTMEEAAALDRLREFDGIGEGKAKAALTAARNNREEL 265 Query 243 YEGFVRKAILASFPEGVGIESMAK-LFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKV 301 +G V P + S+A+ LF A D VT DI R++RLP +LH Sbjct 266 TKGNVD-----VHP---AVYSIARELFETVVEAESAPIDEPVTTDINRLIRLPGSLHGGT 317 Query 302 GLIATYVGTKEREVMK-FNPFRHAVPK 327 GL ++ +R+ + F+P AVP+ Sbjct 318 GLEVQHL---DRDAIDAFDPLSDAVPE 341 >RecName: Full=DNA primase small subunit PriS [Methanosarcina mazei Go1] Sequence ID: Q8PVZ4.1 Length: 414 Range 1: 24 to 355 Score:85.1 bits(209), Expect:4e-17, Method:Compositional matrix adjust., Identities:98/348(28%), Positives:148/348(42%), Gaps:66/348(18%) Query 28 IVDTLESREFGF---DHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP--R 82 + D L +RE+ F D E R + + DY+ +P VY+S A+YE P R Sbjct 24 LPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYPDAR 83 Query 83 EM--EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGF-- 138 +M + W GAEL+FD+DA LP N+ LE K+ + L ++ GF Sbjct 84 KMNEKNWLGAELIFDLDADHLPNAPRNYAD------MLELVKKETLKLMDFLLDDFGFSE 137 Query 139 ENIHVVYS-GRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLE------ 191 ++I +V+S GRGYH I L L S R I+ ++S +I+ FR ++ Sbjct 138 QDIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYLSGRDIDFKYFFREVSMDGDFGTG 197 Query 192 KRGWFVLKH--------GYPRVFRLRLGYFI-------------------LR-------V 217 + + +K+ GY + R+ ++ LR Sbjct 198 SKSFKGIKNLPVKCTLVGYDSGWGKRVALYLTDYMKAECGKKYKKDMFPELRRHEKVGDT 257 Query 218 NVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKA 277 + L++I N K IL+ + K I A F + ESM RF A Sbjct 258 TIKKLINITNSENGLKDILERGRLDFGVRNFKEIAAYFMQ----ESMENFL---NRFG-A 309 Query 278 YFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNPFRHAV 325 D VT DIKR++R+P +LH G++ + E E KFNP AV Sbjct 310 SVDEPVTADIKRLIRVPGSLHGGSGMLVKKLALCELE--KFNPLNDAV 355 >RecName: Full=DNA primase small subunit PriS [Methanoregula boonei 6A8] Sequence ID: A7I9Q9.1 Length: 374 Range 1: 27 to 332 Score:83.2 bits(204), Expect:1e-16, Method:Compositional matrix adjust., Identities:91/326(28%), Positives:142/326(43%), Gaps:42/326(12%) Query 31 TLESREFGFDHNGEGPSD----RKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREM-- 84 +L RE+GF G ++ R + + +L DYIR P VY S A+YE P Sbjct 27 SLAQREWGFVLFNPGAAELRMRRHIAFPERTELFDYIRNLVPSHVYYSSAYYEKPDAPTM 86 Query 85 --EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFEN-- 140 +GW GA+L+FD+DA + + L K + L +L EELG ++ Sbjct 87 AEKGWCGADLIFDLDADHIVKGPYDQ--------MLSRVKTETEKLLAMLTEELGIDSKQ 138 Query 141 IHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLK 199 I +V+SG RGYH+ + D S R ++ +I I+ +L G L Sbjct 139 IELVFSGGRGYHVHVRDLAFRGWGSAERRELVDYICGIGIDPA------VLLNGG---LV 189 Query 200 HGYPRVFRLRLGYFILRVN-------VPHLLSI-GIRRNIAKKILDHKEEIYEGF---VR 248 G+P FR L +I + + HL S+ G+ + A L + EI G + Sbjct 190 PGWPARFRSALAEYIGWLGTLSEDGAMAHLTSLEGVGKESAAGFLKKRAEILAGLSGEID 249 Query 249 KAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYV 308 +L + F A D VT DIKR++R+P+++H G+ + Sbjct 250 PTLLKDRVIKAVVHETEGEFRKRLNEKAALADEPVTTDIKRLIRMPTSIHGGSGMRVQPL 309 Query 309 GTKEREVMKFNPFRHAVPKFRKKEVR 334 + R++ F+P AV F +EVR Sbjct 310 --ELRDLPDFDPLVDAV-VFSAREVR 332 >RecName: Full=DNA primase small subunit PriS [Methanococcoides burtonii DSM 6242] Sequence ID: Q12W69.1 Length: 390 Range 1: 28 to 347 Score:82.0 bits(201), Expect:3e-16, Method:Compositional matrix adjust., Identities:94/336(28%), Positives:148/336(44%), Gaps:49/336(14%) Query 32 LESREFG---FDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPR----EM 84 L RE+G FD E R + ++EDY+ +P VY SVA+Y P + Sbjct 28 LPEREWGVLSFDDMPETVMRRHKSFGSAGEVEDYLTGMAPAHVYYSVAYYTYPNAPTMKE 87 Query 85 EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDA-KELAKDTL---IILREELGF-- 138 + W A+L+FD+DA +H PG P D + K+TL +L ++ GF Sbjct 88 KQWLAADLIFDLDA--------DHIPG--APNSYSDMLDHVKKETLKLYDLLTDDFGFKE 137 Query 139 ENIHVVYS-GRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRR---------- 187 E+I V+S GRGYH I D L L+S R I+ +IS + + F + Sbjct 138 EDIGAVFSGGRGYHFHISDPRVLSLESAERREIVDYISGRGLNLDKIFVKKGVSGDAGSE 197 Query 188 ------FLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLS--IGIRRNIAKKILD-H 238 F E G + + + + LR + + L + I + AK+I++ Sbjct 198 KATMNVFPSEDDGGWGGRINHHMIAYLR--ELAAKEDAEKLFTGFDRIGKKTAKRIVEIL 255 Query 239 KEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLH 298 ++E ++K + + V + + L S A D VT DIKR++RLP +LH Sbjct 256 RDETQVDLLKKGNMEALSR-VNKDIIQTLAERSVTELSASVDEPVTGDIKRLIRLPGSLH 314 Query 299 SKVGLIATYVGTKEREVMKFNPFRHAVPKFRKKEVR 334 K G+ T + + E F+P A+ F K V+ Sbjct 315 GKSGMCVTSLSISQLE--DFDPLNDAI-VFSDKPVK 347 >RecName: Full=DNA primase small subunit PriS [Picrophilus torridus DSM 9790] Sequence ID: Q6L0W5.1 Length: 370 Range 1: 24 to 327 Score:81.6 bits(200), Expect:4e-16, Method:Compositional matrix adjust., Identities:91/323(28%), Positives:142/323(43%), Gaps:34/323(10%) Query 30 DTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPRE--MEG- 86 D + RE G+ G R + + R++E +++ +P +Y S A+Y P E ME Sbjct 24 DLISKREIGY-IPFSGTMIRHLSFRNHREIESFVKRNTPRHLYYSSAYYIKPDEKRMEKK 82 Query 87 -WRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFEN--IHV 143 W GAEL+FD+DA +P + T I LE K +++ L L + GF++ I + Sbjct 83 IWEGAELIFDLDADHIP----GSDKMTYEEILLEVKKHVSR-LLNYLINDFGFDDDSIKL 137 Query 144 VYS-GRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLK--H 200 +S GRGYH+ ++ + LDS +R I +I + ++ R EK LK + Sbjct 138 YFSGGRGYHVHVVSDRVYSLDSDARREIGNYIKMEDF-TIDNIIRASREKPESGPLKRFN 196 Query 201 GYPRVFRLRLGYFILRVNVP---HLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFPE 257 Y Y N + S+ + ++ KKI +E YE F + Sbjct 197 EYISEIYSDENYLKRFYNGDFDRYYKSLDVYKDGKKKIDIMRENNYEKF----------K 246 Query 258 GVGIESMAKLFALSTRFSKAY---FDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKERE 314 V + L + F Y D VT D+ R++R P +LH K GL T V E + Sbjct 247 IVSKRDLDVLNNILNDFKDKYSAEIDEPVTTDVHRLIRFPGSLHGKTGLAVTPVNINEFD 306 Query 315 VMKFNPFRHAVPKFRKKEVREAY 337 F+P AVP+ K + Y Sbjct 307 --NFDPLISAVPEVFKDKYEHVY 327 >RecName: Full=DNA primase small subunit PriS [Methanosarcina barkeri str. Fusaro] Sequence ID: Q46C74.1 Length: 414 Range 1: 24 to 355 Score:80.5 bits(197), Expect:1e-15, Method:Compositional matrix adjust., Identities:95/355(27%), Positives:146/355(41%), Gaps:80/355(22%) Query 28 IVDTLESREFGF---DHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP--R 82 + D L +RE+ F D + R + + DY+ +P VY+S A+YE P R Sbjct 24 LPDHLPNREWAFIFFDSMPDKMMHRHKAFGSPGEALDYLYGMAPAHVYNSTAYYEYPDAR 83 Query 83 EM--EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGF-- 138 +M + W GAEL+FD+DA LP N+ LE K+ + L E+ GF Sbjct 84 KMNEKNWLGAELIFDLDADHLPDAPKNYAD------MLELVKKETFKLMDFLLEDFGFSE 137 Query 139 ENIHVVYS-GRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFV 197 + I +V+S GRGYH + L+L S R I+ ++S +++ FR ++ Sbjct 138 QEIELVFSGGRGYHFHVRSPKVLKLGSAERREIVNYLSGRDLDFKYFFREVAMDGE---- 193 Query 198 LKHGYPRVFRLRLGYFILRVNVPHLLSI-----GIRRNIAKKILDHKEEIYEGFVRKAIL 252 F F NVP ++ G R IA + D+ + +K + Sbjct 194 --------FGTGSKTFKGMKNVPFKCTLVGYDSGWGRRIALYLTDYMKAECGKRYKKDM- 244 Query 253 ASFP-----EGVGIESMAKLFALSTRFS---------------------KAYF------- 279 FP E VG ++ KL +L+ + AYF Sbjct 245 --FPELRRYEKVGDTTIKKLISLTNSENGLKDILEKGRLDFDVRNFKDIAAYFMRESVED 302 Query 280 ---------DGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNPFRHAV 325 D VT DIKR++R+P +LH G++ + E E KF+P AV Sbjct 303 FLHRFGTSVDEPVTADIKRLIRVPGSLHGGSGMLVKKLALSELE--KFDPLTDAV 355 >RecName: Full=DNA primase small subunit PriS [Haloarcula marismortui ATCC 43049] Sequence ID: Q5V554.1 Length: 392 Range 1: 31 to 347 Score:79.0 bits(193), Expect:5e-15, Method:Compositional matrix adjust., Identities:85/336(25%), Positives:140/336(41%), Gaps:56/336(16%) Query 35 REFGFDHNGEGPSD---RKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREM----EGW 87 RE+GF EGP + R D+ ++ED++ P VY S Y+ P +GW Sbjct 31 REWGFIPWTEGPGETMVRHRSLLDLGEIEDFLGRRKPRHVYFSAGRYDEPSASTMSDKGW 90 Query 88 RGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYS- 146 R ++LVFD+DA LP + L K+ + L L ++ GF+++ +V+S Sbjct 91 RSSDLVFDLDADHLPSVVLGEDS---YAEMLAKCKDALRRLLDFLEDDFGFDDLTIVFSG 147 Query 147 GRGYHIRILDEWALQLDSKSRERILAFISASEIE----------------NVEEFRRFLL 190 GRGYH+ + DE L+ +R ++ ++ +E + +R L Sbjct 148 GRGYHVHVRDERIRHLERDARREVVDYVRGIGLEFDELVDEESVAGTAGRSSPAQKRTLS 207 Query 191 EKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKA 250 + GW H + +L V V LL+ + A + L + I EG A Sbjct 208 TEGGWSARAHRH-----------MLAV-VDDLLA--MEEADALEQLQEYDGIGEGKATAA 253 Query 251 ILASFP-----EGVGIESMAKLFALS-------TRFSKAYFDGRVTVDIKRILRLPSTLH 298 + A+ E I+ + L+ A D VT D R++RLP +LH Sbjct 254 LNAARSNYEQLEAGNIDVHPAFYQLAKILLHEVVAADNAPIDEPVTTDTNRLIRLPGSLH 313 Query 299 SKVGLIATYVGTKEREVMKFNPFRHAVPK-FRKKEV 333 GL + + + F+P VP+ FR ++ Sbjct 314 GGSGLEVQRIDRDDLDA--FDPLVDPVPETFRGHDI 347 >RecName: Full=DNA primase small subunit PriS [Thermoplasma volcanium GSS1] Sequence ID: Q979L5.1 Length: 333 Range 1: 1 to 283 Score:76.6 bits(187), Expect:2e-14, Method:Compositional matrix adjust., Identities:90/338(27%), Positives:147/338(43%), Gaps:66/338(19%) Query 2 LMREVTKEERSEF-YSKEWSAKKI--PKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRD 58 +MR+ EE+ + + K + + I P I RE GF EG R S+ + Sbjct 1 MMRDFVSEEKLKLLFEKYYRSTDIDPPALIT----KREVGF-MTFEGEIIRHMHLSNKFE 55 Query 59 LEDYIRATSPYAVYSSVAFYENPREMEG----WRGAELVFDIDAKDLP-LKRCNHEPGTV 113 L + +R T P VYSS A+Y+ P E + W GA+L+FD+D+ LP ++ +E + Sbjct 56 LNNMLRTTVPRHVYSSAAYYKKPDEKKMPEKIWEGADLIFDLDSDHLPGAEKMTYE--EM 113 Query 114 CPICLEDAKELAKDTLIILREELGF--ENIHVVYSG-RGYHIRILDEWALQLDSKSRERI 170 E K L L+ +LG ++I + +SG RGYH+ + E L S +R I Sbjct 114 LNSIKEQTKRLVNKFLV---SDLGISEKDIRIYFSGSRGYHVHVSSEDVYPLGSDARREI 170 Query 171 LAFISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRN 230 ++S + + +++K LK G R G +I V + L +GI Sbjct 171 TDYVSGNSLSIS------VIDK----ALKTG-----EKRPGGWIKDV-ISKLYELGI--- 211 Query 231 IAKKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRI 290 + E+I + + +AI + D VT DI R+ Sbjct 212 -------NAEKISQKQIERAI-----------------DQVKSHNATMVDAPVTYDIHRL 247 Query 291 LRLPSTLHSKVGLIATYVGTKEREVMKFNPFRHAVPKF 328 +R+P +LH K G++ V + + F+P A+PK Sbjct 248 IRMPQSLHGKSGMMVKEVDLDKFD--DFDPLSDAIPKI 283 >RecName: Full=DNA primase small subunit PriS [Thermoplasma acidophilum DSM 1728] Sequence ID: Q9HJJ2.1 Length: 322 Range 1: 45 to 277 Score:76.3 bits(186), Expect:2e-14, Method:Compositional matrix adjust., Identities:77/281(27%), Positives:118/281(41%), Gaps:54/281(19%) Query 58 DLEDYIRATSPYAVYSSVAFYENPREMEG----WRGAELVFDIDAKDLPLKRCNHEPGTV 113 +L +R +P VYSS A+Y P E + W GA+L+FD+D+ LP + + Sbjct 45 ELNMLLRDAAPMHVYSSAAYYRKPDERKMPEKEWGGADLIFDLDSDHLPGSEKLSQKEML 104 Query 114 CPICLEDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRILDEWALQLDSKSRERILA 172 I + D E +I + +I + +SG RGYH+ I D+ +L S +R I Sbjct 105 --IQIRDQTERLVSDFLIADFGIPKSSIKIYFSGNRGYHVHISDDRVYRLGSDARREITD 162 Query 173 FISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIA 232 +I+ + ++ E R ++ G + G+P V LG RR Sbjct 163 YITGNSLD--ETVVRRAIDMLG--IASGGWPAVVSKELG---------EASPANQRR--- 206 Query 233 KKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILR 292 E +RKAI + D VT DI RI+R Sbjct 207 -----------ESDLRKAI-----------------KRARENHSVLIDSPVTYDIHRIIR 238 Query 293 LPSTLHSKVGLIATYVGTKEREVMKFNPFRHAVP-KFRKKE 332 +P+TLH K GLI V + +F+PF+ +P +FR E Sbjct 239 MPNTLHGKSGLIVKEVEID--HLGEFDPFQECIPDQFRDGE 277 >RecName: Full=DNA primase small subunit PriS [Methanothrix thermoacetophila PT] Sequence ID: A0B688.1 Length: 395 Range 1: 28 to 345 Score:76.6 bits(187), Expect:3e-14, Method:Compositional matrix adjust., Identities:88/330(27%), Positives:139/330(42%), Gaps:48/330(14%) Query 32 LESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP----REMEGW 87 +E+RE+GF R + ++L DYIR+T P VY S A+Y P + + W Sbjct 28 MEAREWGFIFYDTPGMRRHRSFRSRKELVDYIRSTVPAHVYHSAAYYLKPDAPTMKEKIW 87 Query 88 RGAELVFDIDAKDLPLKRCNHEPGTVCPI--CLEDAKELAKDTLIILREELGFEN--IHV 143 +GA+L+FD+DA L R + + LE K L L + GF+ I V Sbjct 88 KGADLIFDLDADHLAEYRGS----GIRDFREMLERVKGETMKLLEFLLSDFGFDERMISV 143 Query 144 VYS-GRGYHIRILDEWALQLDSKSRERILAFISA-----------------SEIENVEEF 185 +S GRGYHI + D+ L+L S +R I+ +++ + +E Sbjct 144 AFSGGRGYHIHVRDKSVLKLRSDARREIVDYLTGRGLDPERFIHKIGVDGDAGVERARSL 203 Query 186 RRFLLEKRGWF--VLKHGYPRVFRLRLGYFILRVNVPHLLSI-----GIRRNIAKKILDH 238 R + GW + K V LR ++ L + GI + A+ L Sbjct 204 RGPASDAPGWGGRINKAIESMVMHLR------ELDDEEALRLLKNVKGIGKQKARLFLSQ 257 Query 239 -KEEIYEGFVRKAILASFPEGVGIESMAKLFAL--STRFSKAYFDGRVTVDIKRILRLPS 295 +EE +R L F GI ++ + + + R D VT D+ R++R P Sbjct 258 IREENAIKSIRAGNLDFFKHASGIWNLIIPYIMEETVRALGGETDEPVTADVHRLIRFPE 317 Query 296 TLHSKVGLIATYVGTKEREVMKFNPFRHAV 325 +LH GL T + + F+P + AV Sbjct 318 SLHGGTGLRVTSLSIN--SLHAFDPLKDAV 345 >RecName: Full=DNA primase small subunit PriS [Methanospirillum hungatei JF-1] Sequence ID: Q2FPD1.1 Length: 388 Range 1: 27 to 338 Score:74.3 bits(181), Expect:1e-13, Method:Compositional matrix adjust., Identities:81/330(25%), Positives:149/330(45%), Gaps:45/330(13%) Query 31 TLESREFGFDH-NGEGPSD----RKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREM- 84 +++ REFGF + P D R +S ++++Y+++ P Y S A+Y P+ Sbjct 27 SVKEREFGFIFFDDRYPDDIRMRRHIGFSSGDEMQEYVKSLVPAHAYYSTAYYRTPQAPT 86 Query 85 ---EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFE-- 139 + W GA+L+FD+DA + R ++E LE K A+ L +L ELG + Sbjct 87 MGDKEWLGADLIFDLDADHI--MRGSYE------AMLERIKGEAEKLLDVLDNELGIDMR 138 Query 140 NIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVL 198 I +V+SG RGYH+ + + + R ++ ++ + I + +RGW Sbjct 139 TIKLVFSGGRGYHVHVQELAFRDFEPAERRELVDYVCGTGISPSLLLHDWKPGRRGWH-- 196 Query 199 KHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAI--LASFP 256 FRL L ++ ++ + + + + + E + G + + I L + P Sbjct 197 -----DRFRLVLTRYLQDLSTRPIKEVKAELSSLRGVGQVMAERFAGMIPELITLLNTNP 251 Query 257 EGVGI--ESMAKLFALST-----------RFSKAYFDGRVTVDIKRILRLPSTLHSKVGL 303 + + +++ +F T R + D VT D +R++RLP +LH+K G Sbjct 252 SSILLRDQTVRTVFGALTSERESTLLPHIREAAVQADEPVTTDTRRLIRLPGSLHAKSGF 311 Query 304 IATYVGTKEREVMKFNPFRHAVPKFRKKEV 333 V + +E+ F+P AV F ++EV Sbjct 312 --KVVPMEVKELHDFDPLIDAV-AFGEREV 338 >RecName: Full=DNA primase small subunit PriS [Methanosarcina acetivorans C2A] Sequence ID: Q8TSZ5.1 Length: 414 Range 1: 24 to 355 Score:73.9 bits(180), Expect:2e-13, Method:Compositional matrix adjust., Identities:93/356(26%), Positives:141/356(39%), Gaps:82/356(23%) Query 28 IVDTLESREFGF---DHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP--R 82 + D L +RE+ F D E R + + DY+ +P VY+S A+YE P + Sbjct 24 LPDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYPDAK 83 Query 83 EM--EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGF-- 138 +M + W GAEL+FD+DA LP P D EL K + L + L Sbjct 84 KMNEKNWLGAELIFDLDADHLP----------NAPRNYADMLELVKKEALKLLDFLLDDF 133 Query 139 ----ENIHVVYS-GRGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKR 193 + I +V+S GRGYH I+ L L S R I+ ++S ++E FR ++ Sbjct 134 GFSEQEIQLVFSGGRGYHFHIVSPKVLTLGSSERREIVNYVSGRDLEFKYFFREVAMDGD 193 Query 194 GWFVLKHGYPRVFRLRLGYFILRVNVPHLLSI-----GIRRNIAKKILDHKEEIYEGFVR 248 F F NVP ++ G R IA + D+ + E + Sbjct 194 ------------FGTGSKTFKGMKNVPMKCTLVGYDSGWGRRIALYLTDYMKRESEKKYK 241 Query 249 KAILASF--PEGVGIESMAKLFALSTRFS---------------------KAYF------ 279 K + E VG ++ KL ++ + AYF Sbjct 242 KDMFPELRRHEKVGDTTIKKLINIANSETGLKDILEKGRLDFDVRNFKEIAAYFMQESAE 301 Query 280 ----------DGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNPFRHAV 325 D VT DIKR++R+P +LH G++ + E E +F+P AV Sbjct 302 DFLHRFGASVDEPVTADIKRLIRVPGSLHGGSGMLVKKLALSELE--EFDPLNDAV 355 >RecName: Full=DNA primase small subunit PriS [Staphylothermus marinus F1] Sequence ID: A3DM85.1 Length: 377 Range 1: 67 to 315 Score:70.5 bits(171), Expect:3e-12, Method:Compositional matrix adjust., Identities:75/287(26%), Positives:119/287(41%), Gaps:70/287(24%) Query 67 SPYAVYSSVAFYENPR----EMEGWRGAELVFDIDAKDLP-----LKRCNHEPGT----- 112 +P +Y S A+YE+P E++GW G++L+FD+D+ P L C E Sbjct 67 TPLHLYYSSAYYESPSVNKMELKGWIGSDLMFDLDSDHYPGCDKILSICIEENTIYDGKI 126 Query 113 -VCPI--------------CLEDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRILD 156 CP C++ A A IL +ELG +NI + +SG RG+H++++D Sbjct 127 KTCPKTESKPVIHPLIKTECIQKAYRDALRIKYILEDELGLKNIKIYFSGNRGFHVKVID 186 Query 157 EWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILR 216 E L+S R I ++IS +EN F + +P + + R Y I+ Sbjct 187 EKIWDLESDERREIASYIS---LEN--------------FDINKLFPVIGK-RKKYVIIT 228 Query 217 VNVPHLLSIGIRRNIAKKILDH--KEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRF 274 N I K++LD+ K I G + P KL + Sbjct 229 RN---------EHGIRKRVLDYVIKNNIVNG---NELFIKLP--------LKLLEETIND 268 Query 275 SKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKFNPF 321 D VT+DI R+ R ++++ K GLI + + N F Sbjct 269 LTIPIDIVVTMDISRLSRFGNSINGKSGLITKLIEPLDNYEFDINDF 315 >RecName: Full=DNA primase small subunit PriS [Methanocella arvoryzae MRE50] Sequence ID: Q0W8M0.1 Length: 400 Range 1: 1 to 189 Score:68.2 bits(165), Expect:2e-11, Method:Compositional matrix adjust., Identities:58/195(30%), Positives:101/195(51%), Gaps:16/195(8%) Query 3 MREVTKEERSEFYSKEWSAKKIPKFIVDTLESREFGFDHNGE--GPSDRKNQ-YSDIRDL 59 M + T+ E + +S K+ F+ L RE+GF + E G + R+++ ++ +L Sbjct 1 MNDQTRAFLRERFRDYYSRSKV--FVPPGLAQREWGFIFHEETVGVAMRRHKAFNSEGEL 58 Query 60 EDYIRATSPYAVYSSVAFYENPR----EMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCP 115 DY+R+ P Y S A+Y +P+ + + W GA+L+FD+DA LP + N G + Sbjct 59 ADYLRSMPPAHAYHSAAYYRHPQAPTMQEKDWLGADLIFDLDADHLPGVK-NMTYGEMLD 117 Query 116 ICLEDAKELAKDTLIILREELGF--ENIHVVYS-GRGYHIRILDEWALQLDSKSRERILA 172 + L + LI ++LGF +++ +V+S GRGYH+ + DE L S R I+ Sbjct 118 NVKVEIIRLIDEFLI---DDLGFREKDMDIVFSGGRGYHVHVRDERVRTLKSPERREIVD 174 Query 173 FISASEIENVEEFRR 187 ++ + +E F R Sbjct 175 YLLGTGLEPDRMFIR 189 >RecName: Full=DNA primase small subunit PriS [Halobacterium salinarum R1] Sequence ID: B0R5P1.1 Length: 391 >RecName: Full=DNA primase small subunit PriS [Halobacterium salinarum NRC-1] Sequence ID: Q9HPU3.2 Length: 391 Range 1: 29 to 339 Score:67.4 bits(163), Expect:3e-11, Method:Compositional matrix adjust., Identities:80/325(25%), Positives:128/325(39%), Gaps:44/325(13%) Query 33 ESREFGFDHNGEGPSD---RKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP----REME 85 + RE+G+ GP R D+ + ++ P VY S Y+ P + + Sbjct 29 DDREWGYIPWTAGPDTTMVRHKSTLDLGSMTSFLERKCPRHVYFSAGTYDAPGAATMDEK 88 Query 86 GWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVY 145 W+G++LVFD+DA LP + L K+ L L + GFE + V + Sbjct 89 HWQGSDLVFDLDADHLPRVTLGEDS---YAEMLSKCKDALLRLLDFLERDFGFEELTVTF 145 Query 146 S-GRGYHIRILDEWALQLDSKSRERILAFISASE----------------IENVEEFRRF 188 S GRGYH+ + D +L S+ R I+ ++ ++ +EN E +R Sbjct 146 SGGRGYHVHVRDAGVYELGSEERREIVDYVRGNDLALETLVEAEPVGGRGLENPTE-KRM 204 Query 189 LLEKRGWFVLKHGYPRVFRLRL---GYFILRVNVPHLLSIGIR--RNIAKKILDHKEEIY 243 L GW F L G + +G R R I + D+ + Sbjct 205 LPADGGWGRRVTTRLEAFADDLIERGEDDAVATLTEFDGVGERSARAIYNVVADNTTAVK 264 Query 244 EGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGL 303 G V + +F + + + +A D VT D R++RLP +LH GL Sbjct 265 RGNVD--VHPAF-----LTVARRYIDETVAAEQAPIDEPVTTDTNRLIRLPGSLHGGSGL 317 Query 304 IATYVGTKEREVM-KFNPFRHAVPK 327 V +R + F+P AVP+ Sbjct 318 ---EVQRLDRAALDDFDPLVDAVPE 339 >RecName: Full=DNA primase small subunit PriS [Methanocorpusculum labreanum Z] Sequence ID: A2ST15.1 Length: 380 Range 1: 31 to 327 Score:67.4 bits(163), Expect:3e-11, Method:Compositional matrix adjust., Identities:80/322(25%), Positives:138/322(42%), Gaps:51/322(15%) Query 30 DTLESREFGF---DHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREMEG 86 ++L RE+GF N R ++ +L Y+++ P VY S A+Y +P + Sbjct 31 ESLTEREWGFLFFTENQRSGMRRHISFTSQDELTSYLKSMVPAHVYYSTAYYTHPGAAQM 90 Query 87 ----WRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFE--N 140 WRGA+++FD+DA + R ++ I L KE + +L ELGF + Sbjct 91 ADKEWRGADVIFDLDADHI--VRGPYD------IMLARVKEELFKLIDMLTGELGFAKRD 142 Query 141 IHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLL--EKRGWFV 197 + + +SG RGYH+ + D+ R ++ ++S + + F + +K GW + Sbjct 143 LRINFSGGRGYHVHLPLLSVRGWDTAERRELVNYVSGTGLS----FDSMMAPSQKSGWKL 198 Query 198 LKHG-----YPRVFRL----RLGYFILRVNVPHLLSIGIRRNIAKK---ILDHKEEIYEG 245 H R+ L L Y + + G +NI++ + + E++ Sbjct 199 RYHDALNDELARIAGLPCEDALSYLSGLSGISETFAAGFLKNISQTQNLLKSNPEKLLAN 258 Query 246 FVRKAILASF--PEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGL 303 V +AI + P GI S A A D VT D+KR++R P +LH G+ Sbjct 259 KVVRAIANAENEPFQAGILSRA-----------AQADEPVTTDVKRLIRHPGSLHGGSGM 307 Query 304 IATYVGTKEREVMKFNPFRHAV 325 + + + F+P AV Sbjct 308 RVVPISVDQLDA--FDPLIDAV 327 >RecName: Full=DNA primase small subunit PriS [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q58249.2 Length: 350 Range 1: 26 to 297 Score:67.0 bits(162), Expect:3e-11, Method:Compositional matrix adjust., Identities:89/322(28%), Positives:142/322(44%), Gaps:72/322(22%) Query 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREMEGW 87 I + +E REFG+ + + +R + + R+ +D++ +P Y S+A+ P + G Sbjct 26 IPEGIEYREFGYGY-LKKVDNRNLSFKNEREYKDWVLKNAPMHFYKSLAYMLYPNKSGGA 84 Query 88 RGA-----ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREE------- 135 EL FDID K+C HE +C CLE+AK A I L EE Sbjct 85 SKKGIFRRELAFDIDVH--KTKKCKHEDDWICKHCLEEAKNQA----IYLIEEFLIPDFG 138 Query 136 LGFENIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRG 194 L E++ +V+SG RGYHI I D K R+ I ++ +E RRFL++ Sbjct 139 LNEEDLKIVFSGNRGYHIYIKPR-----DEKIRDIIESY--------SKEDRRFLMD--- 182 Query 195 WFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGI--RRNIAKKILDHKEEI------YEGF 246 +IL N+ +L S+G RR + K I + + I E Sbjct 183 ------------------YILGKNL-NLNSVGSGWRRRLIKAIKERDKRISTKKLENEKN 223 Query 247 VRKAILASFPEGVGIESMAKLFA-LSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIA 305 +K I ++S K++ + +K D +V D R+LR+ ++LH G I Sbjct 224 WKKVI-------ENLKSKNKIYNIIEETKNKIELDEKVMDDDIRLLRVINSLHGYTGFIV 276 Query 306 TYVGTKEREVMKFNPFRHAVPK 327 + + E+ +FNP A+ K Sbjct 277 KPLSGLD-ELRRFNPLEDAIFK 297 >RecName: Full=DNA primase small subunit PriS [Nitrosopumilus maritimus SCM1] Sequence ID: A9A557.1 Length: 373 Range 1: 33 to 318 Score:66.6 bits(161), Expect:5e-11, Method:Compositional matrix adjust., Identities:79/321(25%), Positives:126/321(39%), Gaps:69/321(21%) Query 35 REFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPR---EMEGWRGAE 91 REFG+ G + R D ++L + P VY S A+Y P + W+ A+ Sbjct 33 REFGYQKFNSGMT-RHISVKDDKELHLLLMQNVPSDVYCSNAYYSFPNLPMNEKDWKEAD 91 Query 92 LVFDIDAKDLPL------------------------KRCN----HEPGTVCPICLEDAKE 123 L+FDIDAKDL L +CN + C C++ +K Sbjct 92 LIFDIDAKDLNLSCRGNHTLSICNECHEISNNSEKCSKCNSTKLEKKSLPCKNCIDSSKI 151 Query 124 LAKDTLIILREELGF--ENIHVVYSGR-GYHIRILDEWALQLDSKSRERILAFISASEIE 180 K IL +L ++I V +SG G+HI + + Q S+ R ++ +I Sbjct 152 EVKKLSEILTNDLSVNKDDIQVYFSGNEGFHIYVYNSQFQQNGSRERSELVDYIM----- 206 Query 181 NVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKE 240 F + EK G +K P R + P G + +K + K Sbjct 207 ----FNGAIPEKFG---MKKFKPN-----------RNSFPDFDEAGWKGRFSKYVYGSKS 248 Query 241 EIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSK 300 + R I++ G S K + D VT+DI RI RLP +++SK Sbjct 249 K------RSKIVSELLSN-GYSSFQKTLDDVSENIGTKIDPNVTMDIHRIFRLPGSINSK 301 Query 301 VGLIATYVGTKEREVMKFNPF 321 GL + ++++KF+ + Sbjct 302 SGLTKIHC----KDLVKFDAY 318 >RecName: Full=DNA primase small subunit PriS [Cenarchaeum symbiosum A] Sequence ID: A0RYW9.1 Length: 372 Range 1: 22 to 303 Score:62.4 bits(150), Expect:1e-09, Method:Compositional matrix adjust., Identities:85/327(26%), Positives:127/327(38%), Gaps:90/327(27%) Query 22 KKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFY--- 78 ++IP + D REFG+ G G R + +L + SP VY S Y Sbjct 22 ERIP--VPDRAAQREFGYQRFGGGMV-RHMRVKGSDELRLLLMQNSPSDVYCSNGIYSFP 78 Query 79 ENPREMEGWRGAELVFDIDAKDLPL--------KRCN----HEPGTVCPICLEDAKE--- 123 E P + W+ A+L+FDIDAKDL L +RC+ G CP C A + Sbjct 79 ELPMSDKDWKEADLIFDIDAKDLGLPCRKDHTFRRCSSCGRSHSGDGCPRCGPGAHDQIS 138 Query 124 -LAKDT-----------LIILREELGF--ENIHVVYSGR-GYHIRILDEWALQLDSKSRE 168 L KD + IL E+LG +++ V +SG G+H+ I L S+ R Sbjct 139 VLCKDCIGGAKKEVEKLMHILEEDLGVGRDSVVVYFSGNEGFHVHIGGTQFQGLGSRERG 198 Query 169 RILAFISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIR 228 + ++ RF+ VP +G R Sbjct 199 ELADYV------------RFVGA---------------------------VPQAFGMG-R 218 Query 229 RNIAKKILDHKEE-IYEGFVRK-----------AILASFPEGVGIESMAKLFALSTRFSK 276 A++ D+ +E ++G + + AI A+ E G + + + Sbjct 219 NGAARRDFDYDDEGGWKGRLHREFFGPKSRSSVAITAAIKE--GHRAFGERLKQISPVLG 276 Query 277 AYFDGRVTVDIKRILRLPSTLHSKVGL 303 A D VT DI RI RLP +L+ K GL Sbjct 277 ANIDPHVTTDIHRIFRLPGSLNGKSGL 303 >RecName: Full=DNA primase small subunit PriS [Hyperthermus butylicus DSM 5456] Sequence ID: A2BN97.1 Length: 380 Range 1: 69 to 314 Score:58.2 bits(139), Expect:3e-08, Method:Compositional matrix adjust., Identities:67/273(25%), Positives:118/273(43%), Gaps:54/273(19%) Query 67 SPYAVYSSVAFYENP----REMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPI------ 116 +P Y S A Y+ P + +GWR A+L FDIDA LP C+ G++ + Sbjct 69 APRHFYYSSARYDQPGADDMDAKGWRSADLTFDIDADHLP--ECS---GSIVEVDGGIEG 123 Query 117 ---------CLEDAKELAKDTLIILREELGFEN--IHVVYSG-RGYHIRI----LDEWAL 160 C+ A A+ IL ELGF+ I + +SG RG+H+ + D++A Sbjct 124 KTSFIEEALCMRAAALRAQILYDILVYELGFDKSRIAIEFSGHRGFHVTVYLDDFDDYA- 182 Query 161 QLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRLGYFILRVNVP 220 + S R I+ ++ A + R +LE ++ G P + +P Sbjct 183 KAGSDVRREIVNYVKALGL------RADVLEPWTMLQVRRGKP-------------IPIP 223 Query 221 HLLSI-GIRRNIAKKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYF 279 + + G R +A+ I + + +G + P E + + + + Sbjct 224 PNVQLAGARGRVARII--RRLALRDGAIDIVKAVEGPSTTYSEELREYEDKARQLIGVEI 281 Query 280 DGRVTVDIKRILRLPSTLHSKVGLIATYVGTKE 312 D +V+VD+KR++R+P +++ K GL+ V E Sbjct 282 DEQVSVDVKRLIRVPYSINGKTGLLVKPVTVDE 314 >RecName: Full=DNA primase small subunit PriS [Sulfurisphaera tokodaii str. 7] Sequence ID: Q973F6.2 Length: 318 Range 1: 14 to 197 Score:53.9 bits(128), Expect:5e-07, Method:Compositional matrix adjust., Identities:54/192(28%), Positives:88/192(45%), Gaps:35/192(18%) Query 12 SEFYSKEWSAKKIPKFIVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAV 71 SE+Y K + +P + +E REF + R +S ++L YI P + Sbjct 14 SEYYEK--AELDLP----NDMELREFAYQPFDSETYVRHLSFSSPQELRQYILQNVPLHL 67 Query 72 YSSVAFYENP--REME--GWRGAELVFDIDAKDLP----------------LKRCNHEP- 110 Y S A Y+ P +EM+ GW G++L+FD+DA ++ CN EP Sbjct 68 YYSSARYQLPSAKEMDEKGWLGSDLLFDLDADEICEVKVRRFCPQDGYETLASNCNGEPP 127 Query 111 ---GTVCPICLEDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRIL--DEWALQLDS 164 + C+ E A IL+E+ G N + +SG RG+H+R+ ++ AL LD Sbjct 128 IEYAEITTECIMKVFEKALLIRDILKEDFGL-NARIFFSGNRGFHLRVTCYEDCAL-LDP 185 Query 165 KSRERILAFISA 176 R+ I + ++ Sbjct 186 DDRKEIAEYFTS 197 >RecName: Full=DNA primase small subunit; AltName: Full=DNA primase 49 kDa subunit; Short=p49 [Homo sapiens] Sequence ID: P49642.1 Length: 420 Range 1: 36 to 190 Score:53.5 bits(127), Expect:1e-06, Method:Compositional matrix adjust., Identities:47/157(30%), Positives:73/157(46%), Gaps:11/157(7%) Query 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPY-----AVYSSVAFYENPR 82 I + + REF F + R +++ DLE ++ +PY AVYS N Sbjct 36 IKNYFQHREFSFTLKDD-IYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTV 94 Query 83 EMEGWRGAE--LVFDIDAKDL-PLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFE 139 ++ ++ E LVFDID D ++RC +CP C + L+E+ GF+ Sbjct 95 KLGAFQAQEKELVFDIDMTDYDDVRRCC-SSADICPKCWTLMTMAIRIIDRALKEDFGFK 153 Query 140 NIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFIS 175 + VYSG RG H + DE +L S R I+ ++S Sbjct 154 HRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLS 190 >RecName: Full=DNA primase small subunit PriS [Methanococcus maripaludis S2] Sequence ID: Q6M146.1 Length: 357 Range 1: 34 to 311 Score:52.8 bits(125), Expect:1e-06, Method:Compositional matrix adjust., Identities:73/320(23%), Positives:136/320(42%), Gaps:58/320(18%) Query 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPR----- 82 I D L RE G+ + +R ++ RD ++ SP+ +Y S+++ E P Sbjct 34 IPDDLSHREIGYGM-LKKVDNRNMSFNTERDYLAWVLKESPFHLYKSLSYMEYPDIVGGA 92 Query 83 EMEGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGF---- 138 +G E+ FDID ++C H+ +C CL + A++ ++IL E+ F Sbjct 93 AKKGLFKREVAFDIDTH--KTEKCTHDDSWICEECLGE----ARNQVLILIEDFLFPDFG 146 Query 139 ---ENIHVVYSG-RGYHIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRG 194 +++ +V++G RGYHI + E D + +RI + RR+ +E Sbjct 147 LDEKDLKIVFTGNRGYHIYLKPE-----DPELLKRIEKWGKNE--------RRYFIE--- 190 Query 195 WFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIR-RNIAKKILDHKEEIYEGFVRKAILA 253 +IL N+ +L ++G R +NI + + + + F + + Sbjct 191 ------------------YILGKNL-NLRNMGSRWKNILVREFNKNKIATKKFEKTSDWK 231 Query 254 SFPEGVGIESMAKLFALSTRF-SKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKE 312 + + + ++ + S+ D +V D R+LR +LH GL+ + Sbjct 232 TEIDNRKDTTRRTIYETIDKVKSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEITYNS 291 Query 313 REVMKFNPFRHAV-PKFRKK 331 + +F+P H V KF KK Sbjct 292 LKNNQFDPLNHGVFSKFHKK 311 >RecName: Full=DNA primase small subunit PriS [Methanococcus maripaludis C7] Sequence ID: A6VI60.1 Length: 363 Range 1: 47 to 316 Score:50.1 bits(118), Expect:1e-05, Method:Compositional matrix adjust., Identities:75/320(23%), Positives:136/320(42%), Gaps:67/320(20%) Query 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREM--- 84 ++ +++R F+ NGE + ++ SP+ +Y S+++ E P + Sbjct 47 MLKKVDNRNMSFNTNGEYLA--------------WVLKESPFHLYKSLSYMEYPDVVGGA 92 Query 85 --EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGF---- 138 +G E+ FDID ++C H+ +C CL + A++ ++IL E+ F Sbjct 93 AKKGLIKREVAFDIDTH--KTEKCTHDDSWICEECLGE----ARNQVLILIEDFLFPDFG 146 Query 139 ---ENIHVVYSG-RGYHIRILDEWALQL-DSKSRERILAFISASEIENVEEFRRFLLEKR 193 +++ +V++G RGYHI + E ++ D+K E+I + RR+ +E Sbjct 147 LSEKDLKIVFTGNRGYHIYLKPEDTKKIGDTKLLEKIEKWEKNE--------RRYFIE-- 196 Query 194 GWFVLKHGYPRVFRLRLGYFILRVNVPHLLSIGIRRNIAKKILDHKEEI--YEGFVRKAI 251 + + K+ R R ++R I +K D K EI + VR+ I Sbjct 197 -YILGKNLNLRNMGSRWKNILIR----EFKKNKISTKKFEKTSDWKTEIDTRKDNVRREI 251 Query 252 LASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTK 311 E++ K+ S+ D +V D R+LR +LH GL+ + Sbjct 252 Y---------ETIGKV------KSRLELDEKVMDDDIRLLRTIGSLHGYTGLMVKEITYS 296 Query 312 EREVMKFNPFRHAV-PKFRK 330 + +F+P H V KF K Sbjct 297 SLKSNQFDPLNHGVFSKFHK 316 >RecName: Full=DNA primase small subunit; AltName: Full=DNA primase 49 kDa subunit; Short=p49 [Mus musculus] Sequence ID: P20664.1 Length: 417 Range 1: 56 to 190 Score:48.1 bits(113), Expect:6e-05, Method:Compositional matrix adjust., Identities:40/136(29%), Positives:64/136(47%), Gaps:10/136(7%) Query 49 RKNQYSDIRDLEDYIRATSPY-----AVYSSVAFYENPREMEGWRGAE--LVFDIDAKDL 101 R +++ +LE ++ +PY AVYS N ++ ++ E LVFDID D Sbjct 56 RYQSFNNQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDY 115 Query 102 P-LKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRILDEWA 159 ++RC +C C + L+E+ GF++ VYSG RG H + DE Sbjct 116 DDVRRCC-SSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESV 174 Query 160 LQLDSKSRERILAFIS 175 +L S R I+ ++S Sbjct 175 RKLSSAVRSGIVEYLS 190 >RecName: Full=Uncharacterized DNA primase small subunit-like protein AF_2298 [Archaeoglobus fulgidus DSM 4304] Sequence ID: O27986.1 Length: 280 Range 1: 9 to 205 Score:47.4 bits(111), Expect:8e-05, Method:Compositional matrix adjust., Identities:56/202(28%), Positives:89/202(44%), Gaps:42/202(20%) Query 3 MREVTKEERSEFYSKEWSAKKIPKF-----IVDTLESREFGFDHNGEGPS----DRK--- 50 MR T ER FY E+S ++ K+ I +T + G + P RK Sbjct 9 MRPSTLRERESFYRYEFSLDRVEKWLGWRDIGNTAFAVIIGRHSDIYLPEYEDIKRKAVI 68 Query 51 -NQYSDIRDLEDYIRATSPYAVY------SSVAF-------YENPREMEGWRGAELVFDI 96 +++ + D+ DYI P VY S + Y+N E + G EL FDI Sbjct 69 IDEHKGLADVLDYILQYLPEGVYYDRNVYSDIKLCVERGCDYKNCWGCENFLGQELAFDI 128 Query 97 DAKDLPLKRCNHEP--------GTVCPICLEDAKELAKDTLII---LREELGFENIHVVY 145 D +++ C + G C+ + K++ K TL + LR E ++ + VV+ Sbjct 129 DPENVS---CPYHGSIEDKMKRGEGLSFCMLEFKKVRKLTLSLYDELRAE--YKKLRVVF 183 Query 146 SGRGYHIRILDEWALQLDSKSR 167 SGRG+HI + D AL++ + R Sbjct 184 SGRGFHIHVFDRKALKMSREER 205 >RecName: Full=DNA primase small subunit PriS [Sulfolobus islandicus L.S.2.15] Sequence ID: C3MPG7.1 Length: 330 >RecName: Full=DNA primase small subunit PriS [Sulfolobus islandicus Y.N.15.51] Sequence ID: C3NI04.1 Length: 330 Range 1: 31 to 203 Score:47.0 bits(110), Expect:1e-04, Method:Compositional matrix adjust., Identities:48/179(27%), Positives:79/179(44%), Gaps:40/179(22%) Query 30 DTLESREFGFDHNGEGPSDRKNQYSDIRDLEDY-IRATSPYAVYSSVAFYENP--REME- 85 + +E REF G R +S +L DY + P ++ S A Y+ P R+ME Sbjct 31 NDMELREFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEE 90 Query 86 -GWRGAELVFDIDAKDLPLKRCNHEPGTVCPI--------------------------CL 118 W G++L+FDIDA + C CP+ C+ Sbjct 91 KAWMGSDLLFDIDADHI----CKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECI 146 Query 119 EDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRI--LDEWALQLDSKSRERILAFI 174 + E A++ + IL ++ G + V +SG RG+H+++ + AL LDS R+ I ++ Sbjct 147 KRGLEEARNLVEILEDDFGLKP-KVYFSGNRGFHVQVDCYGDCAL-LDSDERKEIAEYV 203 Range 2: 194 to 263 Score:44.3 bits(103), Expect:8e-04, Method:Compositional matrix adjust., Identities:27/73(37%), Positives:41/73(56%), Gaps:4/73(5%) Query 237 DHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTR-FSKAYFDGRVTVDIKRILRLPS 295 D ++EI E +V + S+P G ES R + DG+VT+D+KR++R+P+ Sbjct 194 DERKEIAE-YVMGVGVPSYPGGS--ESAPGWVGRKNRGINGVTIDGQVTIDVKRLIRIPN 250 Query 296 TLHSKVGLIATYV 308 +LH K GLI V Sbjct 251 SLHGKSGLIVKEV 263 >RecName: Full=DNA primase small subunit PriS [Sulfolobus islandicus M.14.25] Sequence ID: C3MYF5.1 Length: 330 >RecName: Full=DNA primase small subunit PriS [Sulfolobus islandicus M.16.27] Sequence ID: C3N549.1 Length: 330 Range 1: 31 to 203 Score:47.0 bits(110), Expect:1e-04, Method:Compositional matrix adjust., Identities:48/179(27%), Positives:79/179(44%), Gaps:40/179(22%) Query 30 DTLESREFGFDHNGEGPSDRKNQYSDIRDLEDY-IRATSPYAVYSSVAFYENP--REME- 85 + +E REF G R +S +L DY + P ++ S A Y+ P R+ME Sbjct 31 NDMELREFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPAARDMEE 90 Query 86 -GWRGAELVFDIDAKDLPLKRCNHEPGTVCPI--------------------------CL 118 W G++L+FDIDA + C CP+ C+ Sbjct 91 KAWMGSDLLFDIDADHI----CKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECI 146 Query 119 EDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRI--LDEWALQLDSKSRERILAFI 174 + E A++ + IL ++ G + V +SG RG+H+++ + AL LDS R+ I ++ Sbjct 147 KRGLEEARNLVEILEDDFGLKP-KVYFSGNRGFHVQVDCYGDCAL-LDSDERKEIAEYV 203 Range 2: 194 to 263 Score:43.5 bits(101), Expect:0.001, Method:Compositional matrix adjust., Identities:25/72(35%), Positives:42/72(58%), Gaps:2/72(2%) Query 237 DHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPST 296 D ++EI E +V + S+P G G + + + + DG+VT+D+KR++R+P++ Sbjct 194 DERKEIAE-YVMGVGVPSYPGG-GENAPGWVGRKNRGINGVTIDGQVTIDVKRLIRIPNS 251 Query 297 LHSKVGLIATYV 308 LH K GLI V Sbjct 252 LHGKSGLIVKEV 263 >RecName: Full=DNA primase small subunit PriS [Sulfolobus islandicus M.16.4] Sequence ID: C4KGQ2.1 Length: 330 Range 1: 31 to 203 Score:47.0 bits(110), Expect:1e-04, Method:Compositional matrix adjust., Identities:48/179(27%), Positives:79/179(44%), Gaps:40/179(22%) Query 30 DTLESREFGFDHNGEGPSDRKNQYSDIRDLEDY-IRATSPYAVYSSVAFYENP--REME- 85 + +E REF G R +S +L DY + P ++ S A Y+ P R+ME Sbjct 31 NDMELREFALQPFGSDTYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPGARDMEE 90 Query 86 -GWRGAELVFDIDAKDLPLKRCNHEPGTVCPI--------------------------CL 118 W G++L+FDIDA + C CP+ C+ Sbjct 91 KAWMGSDLLFDIDADHI----CKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECI 146 Query 119 EDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRI--LDEWALQLDSKSRERILAFI 174 + E A++ + IL ++ G + V +SG RG+H+++ + AL LDS R+ I ++ Sbjct 147 KRGLEEARNLVEILEDDFGLKP-KVYFSGNRGFHVQVDCYGDCAL-LDSDERKEIAEYV 203 Range 2: 194 to 263 Score:43.5 bits(101), Expect:0.001, Method:Compositional matrix adjust., Identities:25/72(35%), Positives:42/72(58%), Gaps:2/72(2%) Query 237 DHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTRFSKAYFDGRVTVDIKRILRLPST 296 D ++EI E +V + S+P G G + + + + DG+VT+D+KR++R+P++ Sbjct 194 DERKEIAE-YVMGVGVPSYPGG-GENAPGWVGRKNRGINGVTIDGQVTIDVKRLIRIPNS 251 Query 297 LHSKVGLIATYV 308 LH K GLI V Sbjct 252 LHGKSGLIVKEV 263 >RecName: Full=DNA primase small subunit PriS [Aeropyrum pernix K1] Sequence ID: Q9YEZ8.2 Length: 342 Range 1: 33 to 303 Score:47.0 bits(110), Expect:1e-04, Method:Compositional matrix adjust., Identities:77/318(24%), Positives:118/318(37%), Gaps:52/318(16%) Query 35 REFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENP--REME--GWRGA 90 REF F R + + +L Y+ +P Y SVA Y P R ME GW G+ Sbjct 33 REFAFQLFDGDVYVRHIGFDSMEELLSYMAREAPKNAYYSVARYSLPTARSMEEKGWLGS 92 Query 91 ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYSGRGY 150 EL+FDID L+ C G CL + A + L + G + RG+ Sbjct 93 ELMFDIDVDS--LEGCGEVLGDS---CLSRGYKQAVRLVEALYRDFGVPSTLYFTGNRGF 147 Query 151 HIRILDEWALQLDSKSRERILAFISASEIENVEEFRRFLLEKRGWFVLKHGYPRVFRLRL 210 H+ W +L + R I R F LE LRL Sbjct 148 HVLADCGWCRRLGREERREIA--------------RYFTLEG---------------LRL 178 Query 211 GYFILRVNVPHLLSIGIRRNIAKKILDHKEEIYEGFVRKAILASFPEGVGIESMAKLFAL 270 I R RR + + G++ +A L GV + ++ + Sbjct 179 ELIIPRPG---------RRGVRPAPPSPDDPGLRGWIARAALE---RGVDLSAVHEAIED 226 Query 271 STRFSKAYFDGRVTVDIKRILRLPSTLHSKVGLIATYVGTKEREVMKF-NPFRHAVPKFR 329 + D +VT DI R+ R+ +L+ K GL+ +G + + +PFR V +FR Sbjct 227 LLDDVRVAIDVKVTQDISRLARIVGSLNGKAGLLVARLGLEGFHPGDWLSPFRGEV-EFR 285 Query 330 KKEVREAYKLWRESLEYE 347 E ++ ++ E Sbjct 286 ASARLEESRILGRTVSLE 303 >RecName: Full=DNA primase small subunit PriS [Sulfolobus islandicus Y.G.57.14] Sequence ID: C3NDP7.1 Length: 330 Range 1: 31 to 203 Score:46.6 bits(109), Expect:2e-04, Method:Compositional matrix adjust., Identities:48/179(27%), Positives:79/179(44%), Gaps:40/179(22%) Query 30 DTLESREFGFDHNGEGPSDRKNQYSDIRDLEDY-IRATSPYAVYSSVAFYENP--REME- 85 + +E REF G R +S +L DY + P ++ S A Y+ P R+ME Sbjct 31 NDMELREFALQPFGSDMYIRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARDMEE 90 Query 86 -GWRGAELVFDIDAKDLPLKRCNHEPGTVCPI--------------------------CL 118 W G++L+FDIDA + C CP+ C+ Sbjct 91 KAWMGSDLLFDIDADHI----CKLRSIRFCPVCGNAITSEKCERDNVETLEYVEMTSECI 146 Query 119 EDAKELAKDTLIILREELGFENIHVVYSG-RGYHIRI--LDEWALQLDSKSRERILAFI 174 + E A++ + IL ++ G + V +SG RG+H+++ + AL LDS R+ I ++ Sbjct 147 KRGLEEARNLVEILEDDFGLKP-KVYFSGNRGFHVQVDCYGDCAL-LDSDERKEIAEYV 203 Range 2: 194 to 263 Score:44.3 bits(103), Expect:8e-04, Method:Compositional matrix adjust., Identities:27/73(37%), Positives:41/73(56%), Gaps:4/73(5%) Query 237 DHKEEIYEGFVRKAILASFPEGVGIESMAKLFALSTR-FSKAYFDGRVTVDIKRILRLPS 295 D ++EI E +V + S+P G ES R + DG+VT+D+KR++R+P+ Sbjct 194 DERKEIAE-YVMGVGVPSYPGGS--ESAPGWVGRKNRGINGVTIDGQVTIDVKRLIRIPN 250 Query 296 TLHSKVGLIATYV 308 +LH K GLI V Sbjct 251 SLHGKSGLIVKEV 263 >RecName: Full=DNA primase small subunit PriS [Methanococcus maripaludis C6] Sequence ID: A9A8L9.1 Length: 357 Range 1: 34 to 164 Score:46.2 bits(108), Expect:2e-04, Method:Compositional matrix adjust., Identities:36/138(26%), Positives:68/138(49%), Gaps:20/138(14%) Query 28 IVDTLESREFGFDHNGEGPSDRKNQYSDIRDLEDYIRATSPYAVYSSVAFYENPREM--- 84 I D L RE G+ + +R ++ + ++ SP+ +Y S+++ E P + Sbjct 34 IPDDLSHREIGYGM-LKKVDNRNMSFNTDGEYLTWVLKESPFHLYKSLSYMEYPDVVGGA 92 Query 85 --EGWRGAELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGF---- 138 +G E+ FDID ++C H+ +C CL + A++ ++IL E+ F Sbjct 93 AKKGLFKREVAFDIDTH--KTEKCTHDDSWICEECLGE----ARNQVLILIEDFLFPDFG 146 Query 139 ---ENIHVVYSG-RGYHI 152 +++ +V++G RGYHI Sbjct 147 LSEKDLKIVFTGNRGYHI 164 >RecName: Full=DNA primase small subunit PriS [Saccharolobus solfataricus P2] Sequence ID: Q97Z83.1 Length: 330 Range 1: 33 to 203 Score:45.8 bits(107), Expect:2e-04, Method:Compositional matrix adjust., Identities:48/177(27%), Positives:75/177(42%), Gaps:40/177(22%) Query 32 LESREFGFDHNGEGPSDRKNQYSDIRDLEDY-IRATSPYAVYSSVAFYENP--REME--G 86 +E REF G R +S +L DY + P ++ S A Y+ P R ME Sbjct 33 MELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEKA 92 Query 87 WRGAELVFDIDAKDLPLKRCNHEPGTVCPI--------------------------CLED 120 W G++L+FDIDA L C CP+ C++ Sbjct 93 WMGSDLLFDIDADHL----CKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKR 148 Query 121 AKELAKDTLIILREELGFENIHVVYSG-RGYHIRI--LDEWALQLDSKSRERILAFI 174 E ++ + IL ++ G + V +SG RG+H+++ AL LDS R+ I ++ Sbjct 149 GLEQTRNLVEILEDDFGLKP-KVYFSGNRGFHVQVDCYGNCAL-LDSDERKEIAEYV 203