RID: A26KRVFC016
Job Title:Protein Sequence
Program: BLASTP
Query: None ID: lcl|Query_68783(amino acid) Length: 99
Database: nr All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects
Sequences producing significant alignments:
Scientific Common Max Total Query E Per. Acc.
Description Name Name Taxid Score Score cover Value Ident Len Accession
retropepsin [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 8e-66 100.00 99 NP_705926.1
HIV-1 protease in complex with fluoro substituted diol-based C... Human immuno... NA 12721 199 199 100% 1e-65 98.99 110 1W5V_A
HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT... Human immuno... NA 11676 198 198 100% 1e-65 98.99 99 1BV9_A
HIV-1 protease [Human immunodeficiency virus] Human immuno... NA 12721 198 198 100% 1e-65 98.99 99 CAA09316.1
Hiv-1 Protease In Complex With The Cyclic Sulfamide Inhibitor... Human immuno... NA 11676 198 198 100% 1e-65 98.99 99 1AJV_A
Wild type HIV protease bound with GW0385 [Human immunodeficien... Human immuno... NA 11676 198 198 100% 1e-65 98.99 100 2FDE_A
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-65 97.98 99 AFH76815.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-65 97.98 99 AAF05680.1
I84V HIV-1 protease mutant in complex with a carbamoyl decorat... Human immuno... NA 11676 197 197 100% 2e-65 97.98 99 2R38_A
V-1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-65 97.98 99 CAB66012.1
I50V HIV-1 protease mutant in complex with a carbamoyl decorat... Human immuno... NA 11676 197 197 100% 2e-65 97.98 99 2R3T_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-65 97.98 99 AAF80909.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 2e-65 97.98 118 AAL71130.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 3e-65 98.99 132 AEK25549.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 97.98 99 AAC61538.1
V-1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 98.99 99 CAB66023.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 3e-65 98.99 132 AEK25544.1
HYDROXYETHYLENE ISOSTERE INHIBITORS OF HUMAN IMMUNODEFICIENCY... Human immuno... NA 11676 197 197 100% 3e-65 97.98 99 1AAQ_A
COUNTERACTING HIV-1 PROTEASE DRUG RESISTANCE: STRUCTURAL... Human immuno... NA 11676 197 197 100% 3e-65 98.99 99 1BV7_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 97.98 99 AAL30289.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 97.98 99 AAO19329.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 97.98 100 AET13695.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 97.98 103 ADN06987.1
ACTIVE-SITE MOBILITY IN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1... Human immuno... NA 11676 197 197 100% 3e-65 97.98 99 1AXA_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-65 96.97 99 AAB52064.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 4e-65 97.98 131 AAQ54350.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 4e-65 97.98 158 AFH76625.1
STRUCTURAL BASIS OF DRUG RESISTANCE FOR THE V82A MUTANT OF HIV... Human immuno... NA 11676 197 197 100% 4e-65 97.98 99 1HVS_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 97.98 99 AAB41783.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 97.98 99 AAK18207.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 97.98 122 AAL90675.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 97.98 122 AAL57777.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 96.97 99 AAV55678.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 97.98 123 AAL57787.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 97.98 99 AAF27879.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-65 96.97 99 ACV18131.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-65 96.97 99 AAV55510.1
HIV Protease with inhibitor AB-2 [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-65 97.98 99 1ZP8_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 96.97 99 AAS76931.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 96.97 99 AAD21939.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 96.97 99 ABF58040.1
HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH XV638 ... Human immuno... NA 11676 196 196 100% 5e-65 97.98 99 1BWA_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 96.97 99 AAC61541.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-65 97.98 116 AAB58487.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 97.98 99 AAB67183.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 95.96 99 AAF80916.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 95.96 99 AAK68102.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 95.96 99 AAB82832.1
pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-65 96.97 122 AAA91447.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-65 97.98 122 AAL57774.1
V-1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 97.98 99 CAB66030.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-65 97.98 99 AAF64198.1
Hiv-1 Protease Complexed With An Inhibitor Lp-130 [HIV-1... HIV-1 M:B_HXB2R NA 11706 196 196 100% 6e-65 98.99 99 1ODY_A
The Influence of I47A Mutation on Reduced Susceptibility to th... Human immuno... NA 11676 196 196 100% 6e-65 97.98 99 2QHC_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 97.98 99 AAU95700.1
HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910 [Human... Human immuno... NA 11676 196 196 100% 6e-65 97.98 99 1A8G_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 6e-65 97.98 123 AAL57775.1
X-ray crystal structure of wild type HIV-1 protease in complex... Human immuno... NA 11676 196 196 100% 6e-65 97.98 99 5COK_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 97.98 100 AAK09329.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 96.97 99 AAS20657.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 96.97 99 AAA43989.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 96.97 99 AAA61426.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 96.97 99 ALS05736.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-65 96.97 100 AAK09330.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 ABF58041.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 7e-65 97.98 111 AAO12772.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 AAV55006.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 97.98 99 AAK12423.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 ACV17665.1
Crystal Structure of HIV-1 Protease (Q7K, I50V) in Complex wit... Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 2O4L_A
Hiv Triple Mutant Protease Complexed With Inhibitor Sb203386... Human immuno... NA 11676 196 196 100% 7e-65 95.96 99 1TCX_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 97.98 100 AAW24165.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 AAK12432.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 AAB67190.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 ACV19584.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 ACV17546.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 AAP15143.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 AAP72885.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 96.97 99 CAC27901.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-65 95.96 99 ACV19985.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 8e-65 97.98 141 AAQ54345.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-65 97.98 99 ACV17290.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-65 97.98 99 ACR81992.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-65 97.98 99 ABN47500.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-65 97.98 99 AAV56379.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-65 96.97 99 AAP15107.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 8e-65 97.98 136 AAQ54370.1
Hiv-1 Protease V82f/i84v Double Mutant/tipranavir Complex [Hum... Human immuno... NA 11676 196 196 100% 8e-65 96.97 99 1D4S_A
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 103 ADN06949.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 95.96 99 ACV17554.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 99 AAL09185.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 97.98 99 AAV55240.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 99 AGW00540.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 99 AAS20658.1
The Influence of I47A Mutation on Reduced Susceptibility to th... Human immuno... NA 11676 196 196 100% 9e-65 96.97 99 2Z54_A
pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 106 AAA91454.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 99 ABN47617.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-65 96.97 99 AAL90686.1
pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 1e-64 96.97 109 AAO12804.1
protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 1e-64 96.97 99 AAV55761.1
Alignments:
>retropepsin [Human immunodeficiency virus 1]
Sequence ID: NP_705926.1 Length: 99
>retropepsin [Human immunodeficiency virus 1]
Sequence ID: YP_001856241.1 Length: 99 >HIV-1 proteinase complexed with RO 31-8959 [Human immunodeficiency virus type 1 (CLONE 12)]
Sequence ID: 1HXB_A Length: 99 >HIV-1 proteinase complexed with RO 31-8959 [Human immunodeficiency virus type 1 (CLONE 12)]
Sequence ID: 1HXB_B Length: 99 >Native HIV-1 Proteinase [Human immunodeficiency virus 1]
Sequence ID: 1ODW_A Length: 99 >Native HIV-1 Proteinase [Human immunodeficiency virus 1]
Sequence ID: 1ODW_B Length: 99 >pol polyprotein, partial [Human immunodeficiency virus 1]
Sequence ID: AAA91440.1 Length: 99
Range 1: 1 to 99
Score:199 bits(505), Expect:8e-66,
Method:Compositional matrix adjust.,
Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5V_A Length: 110
>HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5V_B Length: 110 >HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5W_A Length: 110 >HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5W_B Length: 110 >HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5X_A Length: 110 >HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5X_B Length: 110 >HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5Y_A Length: 110 >HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor [Human immunodeficiency virus]
Sequence ID: 1W5Y_B Length: 110
Range 1: 12 to 110
Score:199 bits(505), Expect:1e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 12 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 71
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 72 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 110
>HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS [Human immunodeficiency virus 1]
Sequence ID: 1BV9_A Length: 99
>HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS [Human immunodeficiency virus 1]
Sequence ID: 1BV9_B Length: 99 >HIV-1 MUTANT (I84V) PROTEASE COMPLEXED WITH DMP450 [Human immunodeficiency virus 1]
Sequence ID: 1MER_A Length: 99 >HIV-1 MUTANT (I84V) PROTEASE COMPLEXED WITH DMP450 [Human immunodeficiency virus 1]
Sequence ID: 1MER_B Length: 99 >HIV-1 MUTANT (I84V) PROTEASE COMPLEXED WITH DMP323 [Human immunodeficiency virus 1]
Sequence ID: 1MES_A Length: 99 >HIV-1 MUTANT (I84V) PROTEASE COMPLEXED WITH DMP323 [Human immunodeficiency virus 1]
Sequence ID: 1MES_B Length: 99
Range 1: 1 to 99
Score:198 bits(504), Expect:1e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99
>HIV-1 protease, partial [Human immunodeficiency virus]
Sequence ID: CAA09316.1 Length: 99
Range 1: 1 to 99
Score:198 bits(503), Expect:1e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>Hiv-1 Protease In Complex With The Cyclic Sulfamide Inhibitor Aha006 [Human immunodeficiency virus 1]
Sequence ID: 1AJV_A Length: 99
>Hiv-1 Protease In Complex With The Cyclic Sulfamide Inhibitor Aha006 [Human immunodeficiency virus 1]
Sequence ID: 1AJV_B Length: 99 >Hiv-1 Protease In Complex With The Cyclic Urea Inhibitor Aha001 [Human immunodeficiency virus 1]
Sequence ID: 1AJX_A Length: 99 >Hiv-1 Protease In Complex With The Cyclic Urea Inhibitor Aha001 [Human immunodeficiency virus 1]
Sequence ID: 1AJX_B Length: 99 >Alternate Binding Site For The P1-P3 Group Of A Class Of Potent Hiv-1 Protease Inhibitors As A Result Of Concerted Structural Change In 80's Loop. [Human immunodeficiency virus 1]
Sequence ID: 1C70_A Length: 99 >Alternate Binding Site For The P1-P3 Group Of A Class Of Potent Hiv-1 Protease Inhibitors As A Result Of Concerted Structural Change In 80's Loop. [Human immunodeficiency virus 1]
Sequence ID: 1C70_B Length: 99 >HIV-1 Protease in complex with the inhibitor BEA435 [Human immunodeficiency virus]
Sequence ID: 1D4H_A Length: 99 >HIV-1 Protease in complex with the inhibitor BEA435 [Human immunodeficiency virus]
Sequence ID: 1D4H_B Length: 99 >HIV-1 protease in complex with the inhibitor BEA425 [Human immunodeficiency virus]
Sequence ID: 1D4I_A Length: 99 >HIV-1 protease in complex with the inhibitor BEA425 [Human immunodeficiency virus]
Sequence ID: 1D4I_B Length: 99 >HIV-1 protease in complex with the inhibitor MSL370 [Human immunodeficiency virus]
Sequence ID: 1D4J_A Length: 99 >HIV-1 protease in complex with the inhibitor MSL370 [Human immunodeficiency virus]
Sequence ID: 1D4J_B Length: 99 >HIV-1 PROTEASE IN COMPLEX WITH A DIFLUOROKETONE CONTAINING INHIBITOR A79285 [Human immunodeficiency virus 1]
Sequence ID: 1DIF_A Length: 99 >HIV-1 PROTEASE IN COMPLEX WITH A DIFLUOROKETONE CONTAINING INHIBITOR A79285 [Human immunodeficiency virus 1]
Sequence ID: 1DIF_B Length: 99 >HIV-1 protease in complex with the inhibitor BEA322 [Human immunodeficiency virus 1]
Sequence ID: 1EBW_A Length: 99 >HIV-1 protease in complex with the inhibitor BEA322 [Human immunodeficiency virus 1]
Sequence ID: 1EBW_B Length: 99 >HIV-1 protease in complex with the inhibitor BEA388 [Human immunodeficiency virus 1]
Sequence ID: 1EBZ_A Length: 99 >HIV-1 protease in complex with the inhibitor BEA388 [Human immunodeficiency virus 1]
Sequence ID: 1EBZ_B Length: 99 >HIV-1 protease in complex with the inhibitor bea403 [Human immunodeficiency virus 1]
Sequence ID: 1EC0_A Length: 99 >HIV-1 protease in complex with the inhibitor bea403 [Human immunodeficiency virus 1]
Sequence ID: 1EC0_B Length: 99 >HIV-1 protease in complex with the inhibitor BEA409 [Human immunodeficiency virus 1]
Sequence ID: 1EC1_A Length: 99 >HIV-1 protease in complex with the inhibitor BEA409 [Human immunodeficiency virus 1]
Sequence ID: 1EC1_B Length: 99 >HIV-1 protease in complex with the inhibitor BEA428 [Human immunodeficiency virus 1]
Sequence ID: 1EC2_A Length: 99 >HIV-1 protease in complex with the inhibitor BEA428 [Human immunodeficiency virus 1]
Sequence ID: 1EC2_B Length: 99 >HIV-1 protease in complex with the inhibitor MSA367 [Human immunodeficiency virus 1]
Sequence ID: 1EC3_A Length: 99 >HIV-1 protease in complex with the inhibitor MSA367 [Human immunodeficiency virus 1]
Sequence ID: 1EC3_B Length: 99 >Crystal Structure Of The Complex Of Hiv-1 Protease With A Peptidomimetic Inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1FQX_A Length: 99 >Crystal Structure Of The Complex Of Hiv-1 Protease With A Peptidomimetic Inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1FQX_B Length: 99 >Hiv-1 Protease With Cyclic Sulfamide Inhibitor, Aha047 [Human immunodeficiency virus 1]
Sequence ID: 1G2K_A Length: 99 >Hiv-1 Protease With Cyclic Sulfamide Inhibitor, Aha047 [Human immunodeficiency virus 1]
Sequence ID: 1G2K_B Length: 99 >CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR, AHA024 [Human immunodeficiency virus 1]
Sequence ID: 1G35_A Length: 99 >CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR, AHA024 [Human immunodeficiency virus 1]
Sequence ID: 1G35_B Length: 99 >Hiv-1 Protease (Wild Type) Complexed With U89360e (Inhibitor) [Human immunodeficiency virus 1]
Sequence ID: 1GNO_A Length: 99 >Hiv-1 Protease (Wild Type) Complexed With U89360e (Inhibitor) [Human immunodeficiency virus 1]
Sequence ID: 1GNO_B Length: 99 >A Check On Rational Drug Design. Crystal Structure Of A Complex Of Hiv-1 Protease With A Novel Gamma-Turn Mimetic [Human immunodeficiency virus 1]
Sequence ID: 1HBV_A Length: 99 >A Check On Rational Drug Design. Crystal Structure Of A Complex Of Hiv-1 Protease With A Novel Gamma-Turn Mimetic [Human immunodeficiency virus 1]
Sequence ID: 1HBV_B Length: 99 >The Three-Dimensional Structure Of The Aspartyl Protease From The Hiv- 1 Isolate Bru [Human immunodeficiency virus type 1 (BRU ISOLATE)]
Sequence ID: 1HHP_A Length: 99 >COMPARATIVE ANALYSIS OF THE X-RAY STRUCTURES OF HIV-1 AND HIV-2 PROTEASES IN COMPLEX WITH CGP 53820, A NOVEL PSEUDOSYMMETRIC INHIBITOR [Human immunodeficiency virus 1]
Sequence ID: 1HIH_A Length: 99 >COMPARATIVE ANALYSIS OF THE X-RAY STRUCTURES OF HIV-1 AND HIV-2 PROTEASES IN COMPLEX WITH CGP 53820, A NOVEL PSEUDOSYMMETRIC INHIBITOR [Human immunodeficiency virus 1]
Sequence ID: 1HIH_B Length: 99 >INHIBITION OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE BY A C2-SYMMETRIC PHOSPHINATE SYNTHESIS AND CRYSTALLOGRAPHIC ANALYSIS [Human immunodeficiency virus 1]
Sequence ID: 1HOS_A Length: 99 >INHIBITION OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE BY A C2-SYMMETRIC PHOSPHINATE SYNTHESIS AND CRYSTALLOGRAPHIC ANALYSIS [Human immunodeficiency virus 1]
Sequence ID: 1HOS_B Length: 99 >RATIONAL DESIGN, SYNTHESIS AND CRYSTALLOGRAPHIC ANALYSIS OF A HYDROXYETHYLENE-BASED HIV-1 PROTEASE INHIBITOR CONTAINING A HETEROCYCLIC P1'-P2' AMIDE BOND ISOSTERE [Human immunodeficiency virus 1]
Sequence ID: 1HPS_A Length: 99 >RATIONAL DESIGN, SYNTHESIS AND CRYSTALLOGRAPHIC ANALYSIS OF A HYDROXYETHYLENE-BASED HIV-1 PROTEASE INHIBITOR CONTAINING A HETEROCYCLIC P1'-P2' AMIDE BOND ISOSTERE [Human immunodeficiency virus 1]
Sequence ID: 1HPS_B Length: 99 >Crystal Structure Of Hiv-1 Protease In Complex With Vx-478, A Potent And Orally Bioavailable Inhibitor Of The Enzyme [Human immunodeficiency virus 1]
Sequence ID: 1HPV_A Length: 99 >Crystal Structure Of Hiv-1 Protease In Complex With Vx-478, A Potent And Orally Bioavailable Inhibitor Of The Enzyme [Human immunodeficiency virus 1]
Sequence ID: 1HPV_B Length: 99 >Hiv-1 Protease Complexed With The Inhibitor Kni-272 [Human immunodeficiency virus 1]
Sequence ID: 1HPX_A Length: 99 >Hiv-1 Protease Complexed With The Inhibitor Kni-272 [Human immunodeficiency virus 1]
Sequence ID: 1HPX_B Length: 99 >Crystal Structure At 1.9 Angstroms Resolution Of Human Immunodeficiency Virus (Hiv) Ii Protease Complexed With L- 735,524, An Orally Bioavailable Inhibitor Of The Hiv Proteases [Human immunodeficiency virus 1]
Sequence ID: 1HSG_A Length: 99 >Crystal Structure At 1.9 Angstroms Resolution Of Human Immunodeficiency Virus (Hiv) Ii Protease Complexed With L- 735,524, An Orally Bioavailable Inhibitor Of The Hiv Proteases [Human immunodeficiency virus 1]
Sequence ID: 1HSG_B Length: 99 >X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HTE_A Length: 99 >X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HTE_B Length: 99 >X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HTF_A Length: 99 >X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HTF_B Length: 99 >X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HTG_A Length: 99 >X-RAY CRYSTALLOGRAPHIC STUDIES OF A SERIES OF PENICILLIN-DERIVED ASYMMETRIC INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HTG_B Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVI_A Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVI_B Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVJ_A Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVJ_B Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVK_A Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVK_B Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVL_A Length: 99 >INFLUENCE OF STEREOCHEMISTRY ON ACTIVITY AND BINDING MODES FOR C2 SYMMETRY-BASED DIOL INHIBITORS OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1HVL_B Length: 99 >Crystal Structure Of Hiv-1 Protease Complexed With A Hydroxyethylamine Peptidomimetic Inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1IIQ_A Length: 99 >Crystal Structure Of Hiv-1 Protease Complexed With A Hydroxyethylamine Peptidomimetic Inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1IIQ_B Length: 99 >HIV-1 protease in complex with an ethyleneamine inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1M0B_A Length: 99 >HIV-1 protease in complex with an ethyleneamine inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1M0B_B Length: 99 >Crystal structure of HIV-1 protease complexed with Lopinavir. [Human immunodeficiency virus 1]
Sequence ID: 1MUI_A Length: 99 >Crystal structure of HIV-1 protease complexed with Lopinavir. [Human immunodeficiency virus 1]
Sequence ID: 1MUI_B Length: 99 >1.03 A structure of HIV-1 protease: inhibitor binding inside and outside the active site [Human immunodeficiency virus 1]
Sequence ID: 1NH0_A Length: 99 >1.03 A structure of HIV-1 protease: inhibitor binding inside and outside the active site [Human immunodeficiency virus 1]
Sequence ID: 1NH0_B Length: 99 >crystal structure of HIV-1 protease-hup [Human immunodeficiency virus 1]
Sequence ID: 1NPA_A Length: 99 >crystal structure of HIV-1 protease-hup [Human immunodeficiency virus 1]
Sequence ID: 1NPA_B Length: 99 >Crystal structure of HIV-1 protease complexed with LDC271 [Human immunodeficiency virus 1]
Sequence ID: 1NPV_A Length: 99 >Crystal structure of HIV-1 protease complexed with LDC271 [Human immunodeficiency virus 1]
Sequence ID: 1NPV_B Length: 99 >Crystal structure of HIV protease complexed with LGZ479 [Human immunodeficiency virus 1]
Sequence ID: 1NPW_A Length: 99 >Crystal structure of HIV protease complexed with LGZ479 [Human immunodeficiency virus 1]
Sequence ID: 1NPW_B Length: 99 >VIRACEPT (R) (NELFINAVIR MESYLATE, AG1343): A POTENT ORALLY BIOAVAILABLE INHIBITOR OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1OHR_A Length: 99 >VIRACEPT (R) (NELFINAVIR MESYLATE, AG1343): A POTENT ORALLY BIOAVAILABLE INHIBITOR OF HIV-1 PROTEASE [Human immunodeficiency virus 1]
Sequence ID: 1OHR_B Length: 99 >Crystal structure of HIV-1 protease complexed with a product of autoproteolysis [Human immunodeficiency virus 1]
Sequence ID: 1SP5_A Length: 99 >Crystal structure of HIV-1 protease complexed with a product of autoproteolysis [Human immunodeficiency virus 1]
Sequence ID: 1SP5_B Length: 99 >Crystal Structure of HIV Protease complexed with Arylsulfonamide azacyclic urea [Human immunodeficiency virus 1]
Sequence ID: 1T7K_A Length: 99 >Crystal Structure of HIV Protease complexed with Arylsulfonamide azacyclic urea [Human immunodeficiency virus 1]
Sequence ID: 1T7K_B Length: 99 >Crystal structure of a HIV-1 Protease in complex with peptidomimetic inhibitor KI2-PHE-GLU-GLU-NH2 [Human immunodeficiency virus 1]
Sequence ID: 1U8G_A Length: 99 >Crystal structure of a HIV-1 Protease in complex with peptidomimetic inhibitor KI2-PHE-GLU-GLU-NH2 [Human immunodeficiency virus 1]
Sequence ID: 1U8G_B Length: 99 >Hiv-1 Protease Complex With U095438 [3-[1-(4-Bromophenyl) Isobutyl]-4- Hydroxycoumarin [Human immunodeficiency virus 1]
Sequence ID: 1UPJ_A Length: 99 >HIV-1 protease in complex with asymmetric inhibitor, BEA568 [Human immunodeficiency virus 1]
Sequence ID: 1WBK_A Length: 99 >HIV-1 protease in complex with asymmetric inhibitor, BEA568 [Human immunodeficiency virus 1]
Sequence ID: 1WBK_B Length: 99 >HIV-1 protease in complex with symmetric inhibitor, BEA450 [Human immunodeficiency virus 1]
Sequence ID: 1WBM_A Length: 99 >HIV-1 protease in complex with symmetric inhibitor, BEA450 [Human immunodeficiency virus 1]
Sequence ID: 1WBM_B Length: 99 >HIV-1 Protease in complex with pyrrolidinmethanamine [Human immunodeficiency virus 1]
Sequence ID: 1XL2_A Length: 99 >HIV-1 Protease in complex with pyrrolidinmethanamine [Human immunodeficiency virus 1]
Sequence ID: 1XL2_B Length: 99 >HIV-1 Protease in complex with amidhyroxysulfone [Human immunodeficiency virus 1]
Sequence ID: 1XL5_A Length: 99 >HIV-1 Protease in complex with amidhyroxysulfone [Human immunodeficiency virus 1]
Sequence ID: 1XL5_B Length: 99 >HIV Protease with oximinoarylsulfonamide bound [Human immunodeficiency virus 1]
Sequence ID: 1YT9_A Length: 99 >HIV Protease with oximinoarylsulfonamide bound [Human immunodeficiency virus 1]
Sequence ID: 1YT9_B Length: 99 >Synthesis and Activity of N-Axyl Azacyclic Urea HIV-1 Protease Inhibitors with High Potency Against Multiple Drug Resistant Viral Strains. [Human immunodeficiency virus 1]
Sequence ID: 2A4F_A Length: 99 >Synthesis and Activity of N-Axyl Azacyclic Urea HIV-1 Protease Inhibitors with High Potency Against Multiple Drug Resistant Viral Strains. [Human immunodeficiency virus 1]
Sequence ID: 2A4F_B Length: 99 >Structure of HIV-1 protease bound to atazanavir [Human immunodeficiency virus 1]
Sequence ID: 2AQU_A Length: 99 >Structure of HIV-1 protease bound to atazanavir [Human immunodeficiency virus 1]
Sequence ID: 2AQU_B Length: 99 >Structure of HIV1 protease and AKC4p_133a complex. [Human immunodeficiency virus 1]
Sequence ID: 2BB9_A Length: 99 >Structure of HIV1 protease and AKC4p_133a complex. [Human immunodeficiency virus 1]
Sequence ID: 2BB9_B Length: 99 >Structure of HIV1 protease and hh1_173_3a complex. [Human immunodeficiency virus 1]
Sequence ID: 2BBB_A Length: 99 >Structure of HIV1 protease and hh1_173_3a complex. [Human immunodeficiency virus 1]
Sequence ID: 2BBB_B Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPV_A Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPV_B Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPW_A Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPW_B Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPX_A Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPX_B Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPY_A Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPY_B Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPZ_A Length: 99 >HIV-1 protease-inhibitor complex [Human immunodeficiency virus 1]
Sequence ID: 2BPZ_B Length: 99 >HIV-1 protease in complex with inhibitor AHA455 [Human immunodeficiency virus 1]
Sequence ID: 2BQV_A Length: 99 >HIV-1 protease in complex with inhibitor AHA455 [Human immunodeficiency virus 1]
Sequence ID: 2BQV_B Length: 99 >P1' Extended HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol in the Transition-State Mimicking Scaffold [Human immunodeficiency virus 1]
Sequence ID: 2CEJ_A Length: 99 >P1' Extended HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol in the Transition-State Mimicking Scaffold [Human immunodeficiency virus 1]
Sequence ID: 2CEJ_B Length: 99 >P1' Extended HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol in the Transition-State Mimicking Scaffold [Human immunodeficiency virus 1]
Sequence ID: 2CEM_A Length: 99 >P1' Extended HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol in the Transition-State Mimicking Scaffold [Human immunodeficiency virus 1]
Sequence ID: 2CEM_B Length: 99 >P1' Extended HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol in the Transition-State Mimicking Scaffold [Human immunodeficiency virus 1]
Sequence ID: 2CEN_A Length: 99 >P1' Extended HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol in the Transition-State Mimicking Scaffold [Human immunodeficiency virus 1]
Sequence ID: 2CEN_B Length: 99 >HIV-1 Protease in complex with a pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2PQZ_A Length: 99 >HIV-1 Protease in complex with a pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2PQZ_B Length: 99 >HIV-1 protease in complex with a amino decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2PWC_A Length: 99 >HIV-1 protease in complex with a amino decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2PWC_B Length: 99 >HIV-1 protease in complex with a carbamoyl decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2PWR_A Length: 99 >HIV-1 protease in complex with a carbamoyl decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2PWR_B Length: 99 >HIV-1 protease in complex with a multiple decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2QNN_A Length: 99 >HIV-1 protease in complex with a multiple decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2QNN_B Length: 99 >HIV-1 Protease in complex with a iodo decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2QNP_A Length: 99 >HIV-1 Protease in complex with a iodo decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2QNP_B Length: 99 >HIV-1 Protease in complex with a chloro decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2QNQ_A Length: 99 >HIV-1 Protease in complex with a chloro decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2QNQ_B Length: 99 >Hiv-1 Protease Complex With U100313 ([3-[[3-[cyclopropyl [4-Hydroxy- 2oxo-6-[1-(Phenylmethyl)propyl]-2h-Pyran-3-Yl] Methyl]phenyl]amino]- 3-Oxo-Propyl]carbamic Acid Tert-Butyl Ester) [Human immunodeficiency virus 1]
Sequence ID: 2UPJ_A Length: 99 >Hiv-1 Protease Complex With U100313 ([3-[[3-[cyclopropyl [4-Hydroxy- 2oxo-6-[1-(Phenylmethyl)propyl]-2h-Pyran-3-Yl] Methyl]phenyl]amino]- 3-Oxo-Propyl]carbamic Acid Tert-Butyl Ester) [Human immunodeficiency virus 1]
Sequence ID: 2UPJ_B Length: 99 >Two-Carbon-Elongated HIV-1 Protease Inhibitors with a Tertiary- Alcohol-Containing Transition-State Mimic [Human immunodeficiency virus 1]
Sequence ID: 2UXZ_A Length: 99 >Two-Carbon-Elongated HIV-1 Protease Inhibitors with a Tertiary- Alcohol-Containing Transition-State Mimic [Human immunodeficiency virus 1]
Sequence ID: 2UXZ_B Length: 99 >Two-Carbon-Elongated HIV-1 Protease Inhibitors with a Tertiary- Alcohol-Containing Transition-State Mimic [Human immunodeficiency virus 1]
Sequence ID: 2UY0_A Length: 99 >Two-Carbon-Elongated HIV-1 Protease Inhibitors with a Tertiary- Alcohol-Containing Transition-State Mimic [Human immunodeficiency virus 1]
Sequence ID: 2UY0_B Length: 99 >HIV-1 Protease Inhibitors Containing a Tertiary Alcohol in the Transition-State Mimic with Improved Cell-Based Antiviral Activity [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)]
Sequence ID: 2WKZ_A Length: 99 >HIV-1 Protease Inhibitors Containing a Tertiary Alcohol in the Transition-State Mimic with Improved Cell-Based Antiviral Activity [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)]
Sequence ID: 2WKZ_B Length: 99 >HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (hexagonal space group) [Human immunodeficiency virus 1]
Sequence ID: 2ZGA_A Length: 99 >HIV-1 protease in complex with a isobutyl decorated oligoamine [Human immunodeficiency virus 1]
Sequence ID: 3BGB_A Length: 99 >HIV-1 protease in complex with a isobutyl decorated oligoamine [Human immunodeficiency virus 1]
Sequence ID: 3BGB_B Length: 99 >HIV-1 protease in complex with a benzyl decorated oligoamine [Human immunodeficiency virus 1]
Sequence ID: 3BGC_A Length: 99 >HIV-1 protease in complex with a benzyl decorated oligoamine [Human immunodeficiency virus 1]
Sequence ID: 3BGC_B Length: 99 >HIV-1 protease in complex with a three armed pyrrolidine derivative [Human immunodeficiency virus 1]
Sequence ID: 3BHE_A Length: 99 >HIV-1 protease in complex with a three armed pyrrolidine derivative [Human immunodeficiency virus 1]
Sequence ID: 3BHE_B Length: 99 >HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (orthorombic space group) [Human immunodeficiency virus 1]
Sequence ID: 3CKT_A Length: 99 >HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (orthorombic space group) [Human immunodeficiency virus 1]
Sequence ID: 3CKT_B Length: 99 >HIV Protease inhibitors with pseudo-symmetric cores [Human immunodeficiency virus 1]
Sequence ID: 3GGA_A Length: 99 >HIV Protease inhibitors with pseudo-symmetric cores [Human immunodeficiency virus 1]
Sequence ID: 3GGA_B Length: 99 >HIV Protease inhibitors with pseudo-symmetric cores [Human immunodeficiency virus 1]
Sequence ID: 3GGA_C Length: 99 >HIV Protease inhibitors with pseudo-symmetric cores [Human immunodeficiency virus 1]
Sequence ID: 3GGA_D Length: 99 >HIV Protease inhibitors with pseudo-symmetric cores [Human immunodeficiency virus 1]
Sequence ID: 3GGA_G Length: 99 >HIV Protease inhibitors with pseudo-symmetric cores [Human immunodeficiency virus 1]
Sequence ID: 3GGA_H Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_A Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_B Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_C Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_D Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_E Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_F Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_G Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_H Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGV_I Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_A Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_B Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_C Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_D Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_E Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_F Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_G Length: 99 >HIV Protease, pseudo-symmetric inhibitors [Human immunodeficiency virus 1]
Sequence ID: 3GGX_H Length: 99 >X-RAY ANALYSIS OF HIV-1 PROTEINASE AT 2.7 ANGSTROMS RESOLUTION CONFIRMS STRUCTURAL HOMOLOGY AMONG RETROVIRAL ENZYMES [HIV-1 M:B_HXB2R]
Sequence ID: 3PHV_A Length: 99 >HIV-1 protease in complex with an isobutyl decorated oligoamine (symmetric binding mode) [Human immunodeficiency virus type 1 (BRU ISOLATE)]
Sequence ID: 3PSU_A Length: 99 >Dimeric inhibitor of HIV-1 protease. [Human immunodeficiency virus 1]
Sequence ID: 3T11_A Length: 99 >Dimeric inhibitor of HIV-1 protease. [Human immunodeficiency virus 1]
Sequence ID: 3T11_B Length: 99 >Crystal Structure of HIV-1 Protease in Complex with an enamino-oxindole inhibitor [Human immunodeficiency virus type 1 (BRU ISOLATE)]
Sequence ID: 4FE6_A Length: 99 >Crystal structure of wild type HIV-1 protease in complex with darunavir [Human immunodeficiency virus type 1 (BRU ISOLATE)]
Sequence ID: 4HLA_A Length: 99 >Crystal structure of wild type HIV-1 protease in complex with darunavir [Human immunodeficiency virus type 1 (BRU ISOLATE)]
Sequence ID: 4HLA_B Length: 99 >Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor, GRL007 [Human immunodeficiency virus 1]
Sequence ID: 4I8W_A Length: 99 >Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor, GRL007 [Human immunodeficiency virus 1]
Sequence ID: 4I8W_B Length: 99 >Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor, GRL008 [Human immunodeficiency virus 1]
Sequence ID: 4I8Z_A Length: 99 >Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor, GRL008 [Human immunodeficiency virus 1]
Sequence ID: 4I8Z_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-121 [Human immunodeficiency virus 1]
Sequence ID: 5TYR_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-121 [Human immunodeficiency virus 1]
Sequence ID: 5TYR_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-142 [Human immunodeficiency virus 1]
Sequence ID: 5TYS_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-142 [Human immunodeficiency virus 1]
Sequence ID: 5TYS_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-087-13 [Human immunodeficiency virus 1]
Sequence ID: 6D0D_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-087-13 [Human immunodeficiency virus 1]
Sequence ID: 6D0D_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-084-13 [Human immunodeficiency virus 1]
Sequence ID: 6D0E_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-084-13 [Human immunodeficiency virus 1]
Sequence ID: 6D0E_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-08513 [Human immunodeficiency virus 1]
Sequence ID: 6UWB_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-08513 [Human immunodeficiency virus 1]
Sequence ID: 6UWB_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-08613 [Human immunodeficiency virus 1]
Sequence ID: 6UWC_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-08613 [Human immunodeficiency virus 1]
Sequence ID: 6UWC_B Length: 99 >Hiv-1 ProteaseU101935 COMPLEX [Human immunodeficiency virus 1]
Sequence ID: 7UPJ_A Length: 99 >Hiv-1 ProteaseU101935 COMPLEX [Human immunodeficiency virus 1]
Sequence ID: 7UPJ_B Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAC61524.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAC61562.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF27892.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK12513.1 Length: 99
Range 1: 1 to 99
Score:198 bits(503), Expect:1e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>Wild type HIV protease bound with GW0385 [Human immunodeficiency virus 1]
Sequence ID: 2FDE_A Length: 100
>Wild type HIV protease bound with GW0385 [Human immunodeficiency virus 1]
Sequence ID: 2FDE_B Length: 100
Range 1: 2 to 100
Score:198 bits(503), Expect:1e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 2 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 61
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 62 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AFH76815.1 Length: 99
Range 1: 1 to 99
Score:197 bits(502), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF05680.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAG28686.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57506.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAQ68168.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV54885.1 Length: 99
Range 1: 1 to 99
Score:197 bits(502), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>I84V HIV-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R38_A Length: 99
>I84V HIV-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R38_B Length: 99 >I84V HIV-1 protease in complex with a amino decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R3W_A Length: 99 >I84V HIV-1 protease in complex with a amino decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R3W_B Length: 99 >I84V HIV-1 protease in complex with a pyrrolidine diester [Human immunodeficiency virus 1]
Sequence ID: 3BC4_A Length: 99
Range 1: 1 to 99
Score:197 bits(502), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99
>V-1 protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAB66012.1 Length: 99
Range 1: 1 to 99
Score:197 bits(502), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>I50V HIV-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R3T_A Length: 99
>I50V HIV-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R3T_B Length: 99 >I50V HIV-1 protease in complex with an amino decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R43_A Length: 99 >I50V HIV-1 protease in complex with an amino decorated pyrrolidine-based inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2R43_B Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58027.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58028.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58029.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58030.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58031.1 Length: 99
Range 1: 1 to 99
Score:197 bits(502), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGG+GGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGVGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF80909.1 Length: 99
Range 1: 1 to 99
Score:197 bits(502), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL71130.1 Length: 118
Range 1: 4 to 102
Score:198 bits(504), Expect:2e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 4 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 63
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 64 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 102
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AEK25549.1 Length: 132
Range 1: 1 to 99
Score:198 bits(504), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAC61538.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAT79877.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAT80255.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAT80286.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABN47529.1 Length: 99
Range 1: 1 to 99
Score:197 bits(501), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>V-1 protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAB66023.1 Length: 99
>V-1 protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAB66036.1 Length: 99 >V-1 protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAB66042.1 Length: 99
Range 1: 1 to 99
Score:197 bits(501), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AEK25544.1 Length: 132
Range 1: 1 to 99
Score:198 bits(504), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>HYDROXYETHYLENE ISOSTERE INHIBITORS OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE: STRUCTURE-ACTIVITY ANALYSIS USING ENZYME KINETICS, X-RAY CRYSTALLOGRAPHY, AND INFECTED T-CELL ASSAYS [Human immunodeficiency virus 1]
Sequence ID: 1AAQ_A Length: 99
>HYDROXYETHYLENE ISOSTERE INHIBITORS OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE: STRUCTURE-ACTIVITY ANALYSIS USING ENZYME KINETICS, X-RAY CRYSTALLOGRAPHY, AND INFECTED T-CELL ASSAYS [Human immunodeficiency virus 1]
Sequence ID: 1AAQ_B Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QI+IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QIIIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>COUNTERACTING HIV-1 PROTEASE DRUG RESISTANCE: STRUCTURAL ANALYSIS OF MUTANT PROTEASES COMPLEXED WITH XV638 AND SD146, CYCLIC UREA AMIDES WITH BROAD SPECIFICITIES [Human immunodeficiency virus 1]
Sequence ID: 1BV7_A Length: 99
>COUNTERACTING HIV-1 PROTEASE DRUG RESISTANCE: STRUCTURAL ANALYSIS OF MUTANT PROTEASES COMPLEXED WITH XV638 AND SD146, CYCLIC UREA AMIDES WITH BROAD SPECIFICITIES [Human immunodeficiency virus 1]
Sequence ID: 1BV7_B Length: 99 >HIV-1 MUTANT (V82F) PROTEASE COMPLEXED WITH DMP323 [Human immunodeficiency virus 1]
Sequence ID: 1MET_A Length: 99 >HIV-1 MUTANT (V82F) PROTEASE COMPLEXED WITH DMP323 [Human immunodeficiency virus 1]
Sequence ID: 1MET_B Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPFNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL30289.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACB29416.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17735.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAO19329.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRP+VTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AET13695.1 Length: 100
Range 1: 1 to 99
Score:197 bits(501), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ADN06987.1 Length: 103
Range 1: 5 to 103
Score:197 bits(501), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 5 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 64
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 65 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 103
>ACTIVE-SITE MOBILITY IN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AS DEMONSTRATED BY CRYSTAL STRUCTURE OF A28S MUTANT [Human immunodeficiency virus 1]
Sequence ID: 1AXA_A Length: 99
>ACTIVE-SITE MOBILITY IN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AS DEMONSTRATED BY CRYSTAL STRUCTURE OF A28S MUTANT [Human immunodeficiency virus 1]
Sequence ID: 1AXA_B Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTG+DDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGSDDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB52064.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB52065.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB52066.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB52067.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB52068.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:3e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAQ54350.1 Length: 131
Range 1: 19 to 117
Score:198 bits(503), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 19 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 78
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 79 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 117
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AFH76625.1 Length: 158
Range 1: 60 to 158
Score:199 bits(506), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 119
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 120 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 158
>STRUCTURAL BASIS OF DRUG RESISTANCE FOR THE V82A MUTANT OF HIV-1 PROTEASE: BACKBONE FLEXIBILITY AND SUBSITE REPACKING [Human immunodeficiency virus 1]
Sequence ID: 1HVS_A Length: 99
>STRUCTURAL BASIS OF DRUG RESISTANCE FOR THE V82A MUTANT OF HIV-1 PROTEASE: BACKBONE FLEXIBILITY AND SUBSITE REPACKING [Human immunodeficiency virus 1]
Sequence ID: 1HVS_B Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB41783.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB41784.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB41785.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABN55268.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQVKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK18207.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK67538.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55791.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55792.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AAL90675.1 Length: 122
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AAO12768.1 Length: 122 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AAO12769.1 Length: 122
Range 1: 1 to 99
Score:197 bits(502), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QI+IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QIMIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57777.1 Length: 122
Range 1: 15 to 113
Score:197 bits(502), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55678.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLV+IK+GGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57787.1 Length: 123
Range 1: 15 to 113
Score:197 bits(502), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF27879.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABN47697.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV19147.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AEU00416.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AEU01154.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPG+WKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV18131.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:4e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPV+IIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVBIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55510.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55511.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55513.1 Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRN+LTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNMLTQIGCTLNF 99
>HIV Protease with inhibitor AB-2 [Human immunodeficiency virus 1]
Sequence ID: 1ZP8_A Length: 99
>HIV Protease with Scripps AB-3 Inhibitor [Human immunodeficiency virus 1]
Sequence ID: 1ZPA_A Length: 99 >Crystal Structure of HIV-1 Protease (Q7K) in Complex with Atazanavir [Human immunodeficiency virus 1]
Sequence ID: 2O4K_A Length: 99 >Crystal Structure of HIV-1 Protease (Q7K) in Complex with Atazanavir [Human immunodeficiency virus 1]
Sequence ID: 2O4K_B Length: 99 >Crystal Structure of HIV-1 Protease (Q7K) in Complex with Tipranavir [Human immunodeficiency virus 1]
Sequence ID: 2O4P_A Length: 99 >Crystal Structure of HIV-1 Protease (Q7K) in Complex with Tipranavir [Human immunodeficiency virus 1]
Sequence ID: 2O4P_B Length: 99 >Crystal Structure of HIV-1 Protease (Q7K) in Complex with Lopinavir [Human immunodeficiency virus 1]
Sequence ID: 2O4S_A Length: 99 >Crystal Structure of HIV-1 Protease (Q7K) in Complex with Lopinavir [Human immunodeficiency virus 1]
Sequence ID: 2O4S_B Length: 99 >Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor [Human immunodeficiency virus 1]
Sequence ID: 2P3B_A Length: 99 >Structural Studies Of Hiv And Fiv Proteases Complexed Withan Efficient Inhibitor Of Fiv Pr [Human immunodeficiency virus type 1 (CLONE 12)]
Sequence ID: 3TLH_A Length: 99
Range 1: 1 to 99
Score:197 bits(500), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAS76931.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGH+AIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHRAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAD21939.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGH+A+GTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHRAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58040.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58057.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58060.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQL+EALLDTGADDTVLEEMSLPGRWKPKMIGG+GGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLREALLDTGADDTVLEEMSLPGRWKPKMIGGVGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS [Human immunodeficiency virus 1]
Sequence ID: 1BWA_A Length: 99
>HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS [Human immunodeficiency virus 1]
Sequence ID: 1BWA_B Length: 99 >HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH SD146 OF DUPONT PHARMACEUTICALS [Human immunodeficiency virus 1]
Sequence ID: 1BWB_A Length: 99 >HIV-1 PROTEASE (V82F/I84V) DOUBLE MUTANT COMPLEXED WITH SD146 OF DUPONT PHARMACEUTICALS [Human immunodeficiency virus 1]
Sequence ID: 1BWB_B Length: 99 >HIV-1 MUTANT (V82F, I84V) PROTEASE COMPLEXED WITH DMP323 [Human immunodeficiency virus 1]
Sequence ID: 1MEU_A Length: 99 >HIV-1 MUTANT (V82F, I84V) PROTEASE COMPLEXED WITH DMP323 [Human immunodeficiency virus 1]
Sequence ID: 1MEU_B Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTP N+IGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPFNVIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAC61541.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRP+VT+KIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPIVTVKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB58487.1 Length: 116
Range 1: 14 to 112
Score:197 bits(501), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 14 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 73
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 74 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 112
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB67183.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAG28661.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF80916.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
Q+LIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QVLIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK68102.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKA+GTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAVGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB82832.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF63589.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF63590.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17161.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>pol polyprotein, partial [Human immunodeficiency virus 1]
Sequence ID: AAA91447.1 Length: 122
Range 1: 14 to 112
Score:197 bits(501), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 14 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 73
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 74 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 112
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57774.1 Length: 122
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57776.1 Length: 122 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57779.1 Length: 122 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57780.1 Length: 122
Range 1: 15 to 113
Score:197 bits(501), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113
>V-1 protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAB66030.1 Length: 99
>V-1 protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAB66078.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMTLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF64198.1 Length: 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AFH76696.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:5e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMTLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>Hiv-1 Protease Complexed With An Inhibitor Lp-130 [HIV-1 M:B_HXB2R]
Sequence ID: 1ODY_A Length: 99
>Hiv-1 Protease Complexed With An Inhibitor Lp-130 [HIV-1 M:B_HXB2R]
Sequence ID: 1ODY_B Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPG WKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGAWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>The Influence of I47A Mutation on Reduced Susceptibility to the Protease Inhibitor Lopinavir [Human immunodeficiency virus 1]
Sequence ID: 2QHC_A Length: 99
>The Influence of I47A Mutation on Reduced Susceptibility to the Protease Inhibitor Lopinavir [Human immunodeficiency virus 1]
Sequence ID: 2QHC_B Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKM GGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMAGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAU95700.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAU95701.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910 [Human immunodeficiency virus 1]
Sequence ID: 1A8G_A Length: 99
>HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910 [Human immunodeficiency virus 1]
Sequence ID: 1A8G_B Length: 99 >HIV-1 protease in complex with the inhibitor BEA369 [Human immunodeficiency virus 1]
Sequence ID: 1EBY_A Length: 99 >HIV-1 protease in complex with the inhibitor BEA369 [Human immunodeficiency virus 1]
Sequence ID: 1EBY_B Length: 99 >HIV-1 PROTEASE DIMER COMPLEXED WITH A-84538 [Human immunodeficiency virus 1]
Sequence ID: 1HXW_A Length: 99 >HIV-1 PROTEASE DIMER COMPLEXED WITH A-84538 [Human immunodeficiency virus 1]
Sequence ID: 1HXW_B Length: 99 >Inhibitor of HIV protease with unusual binding mode potently inhibiting multi-resistant protease mutants [Human immunodeficiency virus 1]
Sequence ID: 1IZH_A Length: 99 >Inhibitor of HIV protease with unusual binding mode potently inhibiting multi-resistant protease mutants [Human immunodeficiency virus 1]
Sequence ID: 1IZH_B Length: 99 >Hiv-1 Protease Dimer Complexed With A-98881 [Human immunodeficiency virus 1]
Sequence ID: 1PRO_A Length: 99 >Hiv-1 Protease Dimer Complexed With A-98881 [Human immunodeficiency virus 1]
Sequence ID: 1PRO_B Length: 99 >AN ORALLY-BIOAVAILABLE HIV-1 PROTEASE INHIBITOR CONTAINING AN IMIDAZOLE-DERIVED PEPTIDE BOND REPLACEMENT. CRYSTALLOGRAPHIC AND PHARMACOKINETIC ANALYSIS [Human immunodeficiency virus type 1 BH10]
Sequence ID: 1SBG_A Length: 99 >AN ORALLY-BIOAVAILABLE HIV-1 PROTEASE INHIBITOR CONTAINING AN IMIDAZOLE-DERIVED PEPTIDE BOND REPLACEMENT. CRYSTALLOGRAPHIC AND PHARMACOKINETIC ANALYSIS [Human immunodeficiency virus type 1 BH10]
Sequence ID: 1SBG_B Length: 99 >Hiv-1 Protease Complexed With The Inhibitor HoeBAY 793 Hexagonal Form [Human immunodeficiency virus 1]
Sequence ID: 1VIJ_A Length: 99 >Hiv-1 Protease Complexed With The Inhibitor HoeBAY 793 Hexagonal Form [Human immunodeficiency virus 1]
Sequence ID: 1VIJ_B Length: 99 >Hiv-1 Protease Complexed With The Inhibitor HoeBAY 793 Orthorhombic Form [Human immunodeficiency virus 1]
Sequence ID: 1VIK_A Length: 99 >Hiv-1 Protease Complexed With The Inhibitor HoeBAY 793 Orthorhombic Form [Human immunodeficiency virus 1]
Sequence ID: 1VIK_B Length: 99 >Three-Dimensional Structure Of Aspartyl Protease From Human Immunodeficiency Virus Hiv-1 [Human immunodeficiency virus 1]
Sequence ID: 2HVP_A Length: 99 >Crystal Structure of HIV-1 protease complexed with PL-100 [Human immunodeficiency virus 1]
Sequence ID: 2QMP_A Length: 99 >Crystal Structure of HIV-1 protease complexed with PL-100 [Human immunodeficiency virus 1]
Sequence ID: 2QMP_B Length: 99 >HIV protease complexed with compound 10b [Human immunodeficiency virus 1]
Sequence ID: 3M9F_A Length: 99 >HIV protease complexed with compound 10b [Human immunodeficiency virus 1]
Sequence ID: 3M9F_B Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_A Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_B Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_C Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_D Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_E Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_F Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_G Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_H Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_I Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_J Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_K Length: 99 >Discovery of New HIV Protease Inhibitors with Potential for Convenient Dosing and Reduced Side Effects: A-790742 and A-792611. [Human immunodeficiency virus 1]
Sequence ID: 3S85_L Length: 99 >Structure of wild-type HIV protease in complex with darunavir [Human immunodeficiency virus 1]
Sequence ID: 4LL3_A Length: 99 >Structure of wild-type HIV protease in complex with darunavir [Human immunodeficiency virus 1]
Sequence ID: 4LL3_B Length: 99 >X-Ray Crystal Structure Of The Hiv Protease Complex With L- 700,417, An Inhibitor With Pseudo C2 Symmetry [Human immunodeficiency virus 1]
Sequence ID: 4PHV_A Length: 99 >X-Ray Crystal Structure Of The Hiv Protease Complex With L- 700,417, An Inhibitor With Pseudo C2 Symmetry [Human immunodeficiency virus 1]
Sequence ID: 4PHV_B Length: 99 >CRYSTALLOGRAPHIC ANALYSIS OF A COMPLEX BETWEEN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AND ACETYL-PEPSTATIN AT 2.0-ANGSTROMS RESOLUTION [Human immunodeficiency virus 1]
Sequence ID: 5HVP_A Length: 99 >CRYSTALLOGRAPHIC ANALYSIS OF A COMPLEX BETWEEN HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 PROTEASE AND ACETYL-PEPSTATIN AT 2.0-ANGSTROMS RESOLUTION [Human immunodeficiency virus 1]
Sequence ID: 5HVP_B Length: 99 >Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-benzhydryl-2-(3-morpholin-4-ium-2-ylpropylamino)-2-oxo-ethyl]carbamate [Human immunodeficiency virus 1]
Sequence ID: 5IVQ_A Length: 99 >Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-benzhydryl-2-(3-morpholin-4-ium-2-ylpropylamino)-2-oxo-ethyl]carbamate [Human immunodeficiency virus 1]
Sequence ID: 5IVQ_B Length: 99 >Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-[[2-[(3S)-3-[(4-aminophenyl)methylamino]-4-hydroxy-butyl]phenyl]carbamoyl]-2,2-diphenyl-ethyl]carbamate [Human immunodeficiency virus 1]
Sequence ID: 5IVR_A Length: 99 >Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-[[2-[(3S)-3-[(4-aminophenyl)methylamino]-4-hydroxy-butyl]phenyl]carbamoyl]-2,2-diphenyl-ethyl]carbamate [Human immunodeficiency virus 1]
Sequence ID: 5IVR_B Length: 99 >Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-benzhydryl-2-[2-[2-[(2R,5S)-5-(benzylcarbamoyloxymethyl)morpholin-2-yl]ethyl]anilino]-2-oxo-ethyl]carbamate [Human immunodeficiency virus 1]
Sequence ID: 5IVS_A Length: 99 >Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-benzhydryl-2-[2-[2-[(2R,5S)-5-(benzylcarbamoyloxymethyl)morpholin-2-yl]ethyl]anilino]-2-oxo-ethyl]carbamate [Human immunodeficiency virus 1]
Sequence ID: 5IVS_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-001 [Human immunodeficiency virus 1]
Sequence ID: 6MCR_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-003 [Human immunodeficiency virus 1]
Sequence ID: 6MCS_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-063 [Human immunodeficiency virus 1]
Sequence ID: 6OGP_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-004 [Human immunodeficiency virus 1]
Sequence ID: 6OYD_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-002 [Human immunodeficiency virus 1]
Sequence ID: 6OYR_A Length: 99 >Design, activity and 2.8 Angstroms crystal structure of a C2 symmetric inhibitor complexed to HIV-1 protease [Human immunodeficiency virus 1]
Sequence ID: 9HVP_A Length: 99 >Design, activity and 2.8 Angstroms crystal structure of a C2 symmetric inhibitor complexed to HIV-1 protease [Human immunodeficiency virus 1]
Sequence ID: 9HVP_B Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAA61433.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB51862.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB67211.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB67216.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB67225.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57775.1 Length: 123
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57778.1 Length: 123 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57781.1 Length: 123 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57782.1 Length: 123 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL57784.1 Length: 123
Range 1: 15 to 113
Score:197 bits(501), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113
>X-ray crystal structure of wild type HIV-1 protease in complex with GRL-0476 [Human immunodeficiency virus 1]
Sequence ID: 5COK_A Length: 99
>X-ray crystal structure of wild type HIV-1 protease in complex with GRL-0476 [Human immunodeficiency virus 1]
Sequence ID: 5COK_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-015 [Human immunodeficiency virus 1]
Sequence ID: 5CON_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-015 [Human immunodeficiency virus 1]
Sequence ID: 5CON_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-085 [Human immunodeficiency virus 1]
Sequence ID: 5COO_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-085 [Human immunodeficiency virus 1]
Sequence ID: 5COO_B Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-097 [Human immunodeficiency virus 1]
Sequence ID: 5COP_A Length: 99 >X-ray crystal structure of wild type HIV-1 protease in complex with GRL-097 [Human immunodeficiency virus 1]
Sequence ID: 5COP_B Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALL+TGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLNTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK09329.1 Length: 100
Range 1: 2 to 100
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 2 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 61
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 62 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAS20657.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAS20659.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAS20661.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV+QYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAA43989.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAA45092.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV56491.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ADC95964.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ADC95968.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPG+WKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAA61426.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAF80933.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABN47633.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMSLPG+WKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS05736.1 Length: 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS05737.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS05738.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS05739.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS05740.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTV+EEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVVEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK09330.1 Length: 100
Range 1: 2 to 100
Score:196 bits(499), Expect:6e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPG+WKPKMIGGIGGFIKVRQYD
Sbjct 2 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYD 61
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 62 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABF58041.1 Length: 99
Range 1: 1 to 99
Score:196 bits(499), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGG+GGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGVGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNI GRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIFGRNLLTQIGCTLNF 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AAO12772.1 Length: 111
Range 1: 1 to 99
Score:197 bits(500), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55006.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55541.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABM21787.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACB29430.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17395.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK12423.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK12454.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV19184.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17665.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV18161.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: BAO14271.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMTLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>Crystal Structure of HIV-1 Protease (Q7K, I50V) in Complex with Tipranavir [Human immunodeficiency virus 1]
Sequence ID: 2O4L_A Length: 99
>Crystal Structure of HIV-1 Protease (Q7K, I50V) in Complex with Tipranavir [Human immunodeficiency virus 1]
Sequence ID: 2O4L_B Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGG+GGFIKVRQYD
Sbjct 1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGVGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>Hiv Triple Mutant Protease Complexed With Inhibitor Sb203386 [Human immunodeficiency virus 1]
Sequence ID: 1TCX_A Length: 99
>Hiv Triple Mutant Protease Complexed With Inhibitor Sb203386 [Human immunodeficiency virus 1]
Sequence ID: 1TCX_B Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDT+LEEMSLPGRWKPKM+GGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTILEEMSLPGRWKPKMVGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTP+NIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAW24165.1 Length: 100
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAK12432.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL69008.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAN38081.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAP74316.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV54664.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIK+GGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAB67190.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAC61542.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAD21950.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAD44592.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAD44645.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV19584.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AEO27548.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: AEO27549.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17546.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEE+SLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEELSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAP15143.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAP72885.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAU95726.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17104.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17800.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV19063.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVT+KIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: CAC27901.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEE+SLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEELSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV19985.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV20134.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:7e-65,
Method:Compositional matrix adjust.,
Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTI++GGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIRVGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAQ54345.1 Length: 141
Range 1: 29 to 127
Score:197 bits(502), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 29 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 88
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 89 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 127
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17290.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV19451.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QIXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACR81992.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKA GTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAXGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABN47500.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCT NF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTXNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV56379.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMELPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAP15107.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTP NIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPTNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAQ54370.1 Length: 136
Range 1: 29 to 127
Score:197 bits(501), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 29 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 88
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 89 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 127
>Hiv-1 Protease V82f/i84v Double Mutant/tipranavir Complex [Human immunodeficiency virus 1]
Sequence ID: 1D4S_A Length: 99
>Hiv-1 Protease V82f/i84v Double Mutant/tipranavir Complex [Human immunodeficiency virus 1]
Sequence ID: 1D4S_B Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:8e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTP N+IGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPFNVIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ADN06949.1 Length: 103
Range 1: 5 to 103
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 5 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 64
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QI IEICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 65 QIAIEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 103
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17554.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRP+VT+KIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPVVTVKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAL09185.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQVKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55240.1 Length: 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABM21826.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17130.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV17435.1 Length: 99 >protease, partial [Human immunodeficiency virus 1]
Sequence ID: ACV18186.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMDLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AGW00540.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPG+WKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAS20658.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIG+NLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGKNLLTQIGCTLNF 99
>The Influence of I47A Mutation on Reduced Susceptibility to the Protease Inhibitor Lopinavir [Human immunodeficiency virus 1]
Sequence ID: 2Z54_A Length: 99
>The Influence of I47A Mutation on Reduced Susceptibility to the Protease Inhibitor Lopinavir [Human immunodeficiency virus 1]
Sequence ID: 2Z54_B Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKM GGIGGF+KVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMAGGIGGFVKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>pol polyprotein, partial [Human immunodeficiency virus 1]
Sequence ID: AAA91454.1 Length: 106
Range 1: 8 to 106
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 8 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 67
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF
Sbjct 68 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 106
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: ABN47617.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ GCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQJGCTLNF 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AAL90686.1 Length: 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS06244.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS06245.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS06248.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ALS06254.1 Length: 99
Range 1: 1 to 99
Score:196 bits(498), Expect:9e-65,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
Q+ IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: AAO12804.1 Length: 109
Range 1: 1 to 99
Score:196 bits(498), Expect:1e-64,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
Q+ IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
Sbjct 61 QVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
>protease, partial [Human immunodeficiency virus 1]
Sequence ID: AAV55761.1 Length: 99
>pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ABA71123.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1]
Sequence ID: ABA71135.1 Length: 99
Range 1: 1 to 99
Score:196 bits(497), Expect:1e-64,
Method:Compositional matrix adjust.,
Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%)
Query 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60
PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD
Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60
Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
QILIEICGHKAIGTVLVGPTPVNIIGRNL+TQIGCTLNF
Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF 99