RID: 0HR2EKD0013 Job Title:ENV_HV192 O12164 Envelope glycoprotein Program: BLASTP Query: ENV_HV192 O12164 Envelope glycoprotein gp160 {ECO:0000255|HAMAP-Rule:MF_04083} (Env polyprotein {ECO:0000255|HAMAP-Rule:MF_04083}) (Surface protein gp120 {ECO:0000255|HAMAP-Rule:MF_04083}) (SU {ECO:0000255|HAMAP-Rule:MF_04083}) (Glycoprotein 120 {ECO:0000255|HAMAP-Rule:MF_04083}) (gp120 {ECO:0000255|HAMAP-Rule:MF_04083}) (Transmembrane protein gp41 {ECO:0000255|HAMAP-Rule:MF_04083}) (TM {ECO:0000255|HAMAP-Rule:MF_04083}) (Glycoprotein 41 {ECO:0000255|HAMAP-Rule:MF_04083}) (gp41 {ECO:0000255|HAMAP-Rule:MF_04083}) (Precursor) ID: lcl|Query_1135910(amino acid) Length: 473 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:C_92... NA 388812 996 996 100% 0.0 100.00 856 O12164.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:C_ET... NA 388796 766 766 100% 0.0 77.99 851 Q75008.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11693 749 749 100% 0.0 74.64 852 P12488.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F1_V... NA 388813 749 749 100% 0.0 75.95 832 Q9QSQ7.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11688 742 742 100% 0.0 73.85 848 P20871.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11691 741 741 100% 0.0 74.43 847 P19550.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11705 741 741 100% 0.0 75.32 847 P05880.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_AR... NA 11685 739 739 100% 0.0 74.11 855 P03378.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 31678 739 739 100% 0.0 74.95 856 P31872.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 36375 734 734 100% 0.0 72.77 861 P31819.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 82834 729 729 100% 0.0 73.29 856 Q70626.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 362651 729 729 100% 0.0 74.01 843 P35961.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:H_90... NA 388826 729 729 98% 0.0 74.47 845 O70902.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11678 729 729 100% 0.0 72.93 856 P03375.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11701 727 727 100% 0.0 71.78 865 P04579.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11708 727 727 100% 0.0 73.18 855 P04580.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_HXB2R NA 11706 726 726 100% 0.0 73.08 856 P04578.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11690 725 725 100% 0.0 73.28 852 P19549.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11692 724 724 100% 0.0 72.97 856 P05881.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_89.6 NA 401671 724 724 100% 0.0 73.12 853 Q73372.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:K_96... NA 388906 723 723 100% 0.0 72.75 842 Q9QBY2.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11684 723 723 100% 0.0 72.29 851 P04582.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11694 723 723 100% 0.0 70.51 867 P12489.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11687 721 721 100% 0.0 70.06 868 P05879.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11707 719 719 100% 0.0 72.67 856 P04624.3 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11686 719 719 100% 0.0 72.13 861 P03377.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F1_9... NA 388814 719 719 100% 0.0 72.92 846 O89292.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11681 717 717 100% 0.0 71.72 863 P05882.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11702 717 717 100% 0.0 71.40 856 P05878.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11683 717 717 100% 0.0 73.03 853 P12487.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_MN NA 11696 716 716 100% 0.0 72.37 856 P05877.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F2_M... NA 388815 714 714 100% 0.0 72.33 843 Q9QBZ4.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:J_SE... NA 388904 712 712 100% 0.0 70.75 850 Q9WC69.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11704 712 712 100% 0.0 71.90 853 P19551.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11699 711 711 100% 0.0 70.37 855 P20888.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F2_M... NA 388823 709 709 100% 0.0 71.40 850 Q9QBZ0.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11689 699 699 100% 0.0 71.22 853 P04581.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:H_VI991 NA 388888 698 698 98% 0.0 72.61 859 Q9Q714.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:K_97... NA 388907 695 695 100% 0.0 71.52 851 Q9QBZ8.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11697 689 689 100% 0.0 70.43 859 P04583.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:J_SE... NA 388905 688 688 100% 0.0 69.79 848 Q9WC60.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:G_92... NA 388825 664 664 97% 0.0 68.67 849 O41803.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11695 660 660 98% 0.0 68.43 846 P18799.1 RecName: Full=Truncated surface protein; Short=SU; AltName:... Human immuno... NA 11680 606 606 89% 0.0 69.23 460 P12491.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz GAB1 NA 402771 590 590 100% 0.0 60.04 854 P17281.1 RecName: Full=Truncated surface protein; Short=SU; AltName:... Human immuno... NA 11698 581 581 82% 0.0 73.26 421 P12490.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz MB66 NA 388911 573 573 100% 0.0 56.11 880 Q1A261.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 N_YBF30 NA 388818 568 568 100% 0.0 57.47 842 O91086.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz EK505 NA 388912 566 566 100% 0.0 58.37 835 Q1A243.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 N_YBF106 NA 388819 563 563 100% 0.0 56.38 836 Q9IDV2.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 O_ANT70 NA 327105 473 473 100% 3e-158 49.29 863 Q77377.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 O_MVP5180 NA 388816 468 468 100% 4e-156 48.06 876 Q79670.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz TAN1 NA 388910 418 418 97% 6e-137 46.23 871 Q8AIH5.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11719 279 279 98% 4e-84 37.07 856 P05883.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11720 279 279 98% 6e-84 36.71 858 P04577.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11715 275 275 98% 1e-82 36.27 859 P24105.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11717 268 268 98% 5e-81 35.37 738 P18040.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 31681 266 266 98% 2e-80 36.16 712 P32536.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11721 269 269 98% 4e-80 36.16 859 P20872.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11718 266 266 98% 3e-79 35.37 846 P12449.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 31684 261 261 100% 3e-77 33.53 854 Q02837.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11713 256 256 98% 2e-75 34.35 851 P17755.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11735 255 255 98% 4e-75 32.35 881 P05884.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11734 255 255 98% 5e-75 32.68 881 P08810.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11736 255 255 98% 7e-75 32.68 881 P11267.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11733 253 253 98% 3e-74 32.68 882 P05885.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11738 253 253 98% 5e-74 32.75 889 P19503.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 73484 250 250 100% 3e-73 33.73 857 Q74126.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11731 249 249 100% 6e-73 31.64 865 P05886.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11714 248 248 98% 2e-72 33.73 860 P18094.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11727 246 246 100% 2e-72 32.70 768 P27757.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11737 248 248 98% 3e-72 32.03 885 P12492.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-2 B_UC1 NA 388822 240 240 98% 1e-69 33.47 857 Q76638.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-2 B_EHO NA 388821 239 239 99% 3e-69 32.56 852 Q89607.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11716 233 233 100% 7e-67 32.75 859 P15831.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11730 232 232 98% 1e-66 31.69 877 P27977.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11732 160 160 100% 2e-41 26.96 821 P22380.1 Alignments: >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:C_92BR025] Sequence ID: O12164.1 Length: 856 Range 1: 32 to 504 Score:996 bits(2574), Expect:0.0, Method:Compositional matrix adjust., Identities:473/473(100%), Positives:473/473(100%), Gaps:0/473(0%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN Sbjct 32 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEIKNC 120 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEIKNC Sbjct 92 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEIKNC 151 Query 121 SFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPI 180 SFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPI Sbjct 152 SFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPI 211 Query 181 PIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIR 240 PIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIR Sbjct 212 PIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIR 271 Query 241 SKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS 300 SKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS Sbjct 272 SKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS 331 Query 301 RTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTY 360 RTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTY Sbjct 332 RTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTY 391 Query 361 TPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDG 420 TPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDG Sbjct 392 TPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDG 451 Query 421 GTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 GTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR Sbjct 452 GTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 504 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:C_ETH2220] Sequence ID: Q75008.1 Length: 851 Range 1: 32 to 500 Score:766 bits(1978), Expect:0.0, Method:Compositional matrix adjust., Identities:372/477(78%), Positives:405/477(84%), Gaps:12/477(2%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWK+A TLFCASDAKAYD EVHNVW T ACVPTDP+PQE+ LENVTEN Sbjct 32 NLWVTVYYGVPVWKDASPTLFCASDAKAYDTEVHNVWGTFACVPTDPSPQELGLENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS---NRTIDYNNRTDNMGGEI 117 FNMW+NDMVEQMHQDIISLWDQ LKPCVKLTPLCVTL+C+ N T NN ++ E+ Sbjct 92 FNMWKNDMVEQMHQDIISLWDQGLKPCVKLTPLCVTLNCNAIKNNTKVTNNSINSANDEM 151 Query 118 KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSF 177 KNCSFN+TTE+RDK+ K +ALFY+LDIVPL N S+ DYRLINCNTS ITQACPKVS Sbjct 152 KNCSFNITTELRDKKRKAYALFYKLDIVPLNNGST----DYRLINCNTSTITQACPKVSL 207 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 DPIPIHYCAPAGYAILKC +KTF GTGPC+NVST+QCTHG KPVVSTQLLLNGS+AE E Sbjct 208 DPIPIHYCAPAGYAILKCRDKTFTGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSIAEGET 267 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHC 297 IIR +NLT+N K IIV LNESVEI CTRP+NNTR+SIRIGPGQ FYATG+IIGDIRQAHC Sbjct 268 IIRFENLTNNAKIIIVQLNESVEITCTRPSNNTRESIRIGPGQTFYATGDIIGDIRQAHC 327 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFN 357 NIS WNKTLQ+V +KL +HFPNK I+F SGGDLEITTHSFNC GEFFYCNTS+LFN Sbjct 328 NISEEKWNKTLQKVKEKLQKHFPNKTIEFKPSSGGDLEITTHSFNCGGEFFYCNTSNLFN 387 Query 358 STYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLT 417 ST E + N IT+ CRIKQIINMWQGVGRAMYAPPIEGI+ CRSNITGLLLT Sbjct 388 ST----KLELFNSSTNLNITLQCRIKQIINMWQGVGRAMYAPPIEGIIMCRSNITGLLLT 443 Query 418 RDGGTGMHDT-EIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 RDG H T EIFRPEGGDMRDNWRSELYKYKVVEIKPLG+APTK KRRVVEREKR Sbjct 444 RDGAKEPHSTKEIFRPEGGDMRDNWRSELYKYKVVEIKPLGVAPTKPKRRVVEREKR 500 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (BRAIN ISOLATE)] Sequence ID: P12488.1 Length: 852 Range 1: 34 to 507 Score:749 bits(1935), Expect:0.0, Method:Compositional matrix adjust., Identities:359/481(75%), Positives:408/481(84%), Gaps:16/481(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD E+HNVWATHACVPTDPNPQE+V+ NVTENF Sbjct 34 LWVTVYYGVPVWKEANTTLFCASDAKAYDTEIHNVWATHACVPTDPNPQELVMGNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYN--NRTDNMG----- 114 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C D+N N T N G Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCH----DFNATNATSNSGKMMEG 149 Query 115 GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPK 174 GE+KNCSFN+TT +RDK +K +ALFY+LDIVP+ N+ +NT YRLI+CNTS ITQACPK Sbjct 150 GEMKNCSFNITTSIRDKMQKEYALFYKLDIVPIDNDKTNTR--YRLISCNTSVITQACPK 207 Query 175 VSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAE 234 V+F+PIPIHYCAPAG+AILKCNNK FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAE Sbjct 208 VTFEPIPIHYCAPAGFAILKCNNKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAE 267 Query 235 EEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQ 294 EE++IRS+N T+NVKTIIV LNESVEINCTRPNNNTRK I +GPG+ +Y TG+IIGDIR+ Sbjct 268 EEVVIRSENFTNNVKTIIVQLNESVEINCTRPNNNTRKRITMGPGRVYYTTGQIIGDIRR 327 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSS 354 AHCN+SR+ W TL+++ KL F NK I F + SGGD EI HSFNC GEFF+CNT+ Sbjct 328 AHCNLSRSKWENTLKQIVTKLRVQFKNKTIVFNRSSGGDPEIVMHSFNCGGEFFFCNTTQ 387 Query 355 LFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGL 414 LFNST+ N+T NIT NS IT+PCRIKQIINMWQ VG+AMYAPPI G + C SNITGL Sbjct 388 LFNSTWYRNTTGNIT-EGNSPITLPCRIKQIINMWQEVGKAMYAPPIRGQIKCSSNITGL 446 Query 415 LLTRDGGTGMH--DTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 LLTRDGG DTEIFRP GG+MRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+REK Sbjct 447 LLTRDGGNNNETTDTEIFRPGGGNMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK 506 Query 473 R 473 R Sbjct 507 R 507 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F1_VI850] Sequence ID: Q9QSQ7.1 Length: 832 Range 1: 32 to 487 Score:749 bits(1934), Expect:0.0, Method:Compositional matrix adjust., Identities:360/474(76%), Positives:401/474(84%), Gaps:19/474(4%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAKAY+ E HNVWATHACVPTDPNPQE+ L+NVTEN Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDAKAYEREAHNVWATHACVPTDPNPQEVFLKNVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEIKNC 120 F+MW+N+MVEQMH DIISLWDQSLKPCVKLTPLCVTL+C+N T N + G ++NC Sbjct 92 FDMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTNAT----NNSQEKPGAMQNC 147 Query 121 SFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPI 180 SFNMTTEVRDK+ K+ ALFYRLDIVP+ N N S +YRLINCNTS ITQACPKVS+DPI Sbjct 148 SFNMTTEVRDKKLKLSALFYRLDIVPIGN---NNSSEYRLINCNTSTITQACPKVSWDPI 204 Query 181 PIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIR 240 PIHYCAPAGYAILKCN+K FNGTGPC NVST+QCTHG KPVVSTQLLLNGSLAEE I+IR Sbjct 205 PIHYCAPAGYAILKCNDKRFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEGIVIR 264 Query 241 SKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS 300 S+N+++N KTIIVHLNESV+INCTRPNNNTRK I +GPGQ FYATG IIGDIR+AHCNIS Sbjct 265 SQNISNNAKTIIVHLNESVQINCTRPNNNTRKGIHLGPGQTFYATGAIIGDIRKAHCNIS 324 Query 301 RTAWNKTLQEVGKKLAEHFPNK-AIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNST 359 T WN TL+ V +L HFPN AIKF + SGGDLEIT HSFNCRGEFFYC+TS LFN Sbjct 325 GTQWNNTLEYVKAELKSHFPNNTAIKFNQSSGGDLEITMHSFNCRGEFFYCDTSGLFND- 383 Query 360 YTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRD 419 TG+ N IT+PCRIKQI+NMWQGVGRAMY PI G +TC SNITGLLLTRD Sbjct 384 ---------TGSNNGTITLPCRIKQIVNMWQGVGRAMYTSPIAGNITCNSNITGLLLTRD 434 Query 420 GGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 GG + E FRPEGG+M+DNWRSELYKYKVVEI+PLG+APTKAKR+VV+REKR Sbjct 435 GGN-ESNIETFRPEGGNMKDNWRSELYKYKVVEIEPLGVAPTKAKRQVVQREKR 487 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20871.1 Length: 848 Range 1: 33 to 503 Score:742 bits(1915), Expect:0.0, Method:Compositional matrix adjust., Identities:353/478(74%), Positives:403/478(84%), Gaps:13/478(2%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKE TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VLENVTE+F Sbjct 33 LWVTVYYGVPVWKETTTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTEDF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGG-----E 116 NMW+N+MVEQM +D+I+LWDQSLKPCVKLTPLCVTL+C + ++ N T + G E Sbjct 93 NMWKNNMVEQMQEDVINLWDQSLKPCVKLTPLCVTLNCKD--VNATNTTSSSEGMMERGE 150 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN+T +RDK +K +ALFY+LD+VP+ N+++ YRLI+CNTS ITQACPKVS Sbjct 151 IKNCSFNITKSIRDKVQKEYALFYKLDVVPIDNKNNT---KYRLISCNTSVITQACPKVS 207 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYCAPAG+AILKCNNKTFNG G C NVST+QCTHG +PVVSTQLLLNGSLAEE+ Sbjct 208 FEPIPIHYCAPAGFAILKCNNKTFNGKGQCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEK 267 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAH 296 ++IRS N TDN KTIIV LNESV+INCTRP+NNTRKSI IGPG+AFY TGEIIGDIRQAH Sbjct 268 VVIRSDNFTDNAKTIIVQLNESVKINCTRPSNNTRKSIHIGPGRAFYTTGEIIGDIRQAH 327 Query 297 CNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLF 356 CNISR WN TL+++ +KL E F NK I F SGGD EI HSFNC GEFFYCN++ LF Sbjct 328 CNISRAQWNNTLKQIVEKLREQFNNKTIVFTHSSGGDPEIVMHSFNCGGEFFYCNSTQLF 387 Query 357 NSTYTPNSTENITGTE-NSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLL 415 NST+ N TE +GTE N I +PCRIKQIINMWQ VG+AMYAPPI+G + C SNITGLL Sbjct 388 NSTW--NDTEKSSGTEGNDTIILPCRIKQIINMWQEVGKAMYAPPIKGQIRCSSNITGLL 445 Query 416 LTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LTRDGG + EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+REKR Sbjct 446 LTRDGGKNESEIEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR 503 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (SF162 ISOLATE)] Sequence ID: P19550.1 Length: 847 Range 1: 33 to 502 Score:741 bits(1913), Expect:0.0, Method:Compositional matrix adjust., Identities:358/481(74%), Positives:403/481(83%), Gaps:20/481(4%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VLENVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMG----GEI 117 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTLHC+N N ++ N GEI Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTNLKNATNTKSSNWKEMDRGEI 152 Query 118 KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSF 177 KNCSF +TT +R+K +K +ALFY+LD+VP+ N+ NTS Y+LINCNTS ITQACPKVSF Sbjct 153 KNCSFKVTTSIRNKMQKEYALFYKLDVVPIDND--NTS--YKLINCNTSVITQACPKVSF 208 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 +PIPIHYCAPAG+AILKCN+K FNG+GPC NVST+QCTHG +PVVSTQLLLNGSLAEE + Sbjct 209 EPIPIHYCAPAGFAILKCNDKKFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEGV 268 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHC 297 +IRS+N TDN KTIIV L ESVEINCTRPNNNTRKSI IGPG+AFYATG+IIGDIRQAHC Sbjct 269 VIRSENFTDNAKTIIVQLKESVEINCTRPNNNTRKSITIGPGRAFYATGDIIGDIRQAHC 328 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFN 357 NIS WN TL+++ KL F NK I F + SGGD EI HSFNC GEFFYCN++ LFN Sbjct 329 NISGEKWNNTLKQIVTKLQAQFGNKTIVFKQSSGGDPEIVMHSFNCGGEFFYCNSTQLFN 388 Query 358 STYT----PNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITG 413 ST+ PN+T N IT+PCRIKQIIN WQ VG+AMYAPPI G + C SNITG Sbjct 389 STWNNTIGPNNT-------NGTITLPCRIKQIINRWQEVGKAMYAPPIRGQIRCSSNITG 441 Query 414 LLLTRDGGTGMHD-TEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 LLLTRDGG + + TEIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+REK Sbjct 442 LLLTRDGGKEISNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK 501 Query 473 R 473 R Sbjct 502 R 502 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (WMJ2 ISOLATE)] Sequence ID: P05880.1 Length: 847 Range 1: 33 to 501 Score:741 bits(1912), Expect:0.0, Method:Compositional matrix adjust., Identities:357/474(75%), Positives:401/474(84%), Gaps:7/474(1%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAY E HNVWATHACVPTDPNPQE++L NVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEVILGNVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTI-DYNNRTDNMGGEIKNC 120 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C ++ I D+ N T GGE+KNC Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCIDKNITDWKNTTIIGGGEVKNC 152 Query 121 SFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPI 180 SFN+TT RDK K +ALFY+LD+VP+K + N S YRLINCNTS ITQACPKVSF+PI Sbjct 153 SFNITTSRRDKVHKEYALFYKLDVVPIKGD--NNSSRYRLINCNTSVITQACPKVSFEPI 210 Query 181 PIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIR 240 PIHYCAPAG+AILKCN+K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEEEI+IR Sbjct 211 PIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIR 270 Query 241 SKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS 300 S+N TDN KTIIVHLNESVEINCTRP NN R+S+ IGPG+AF T EIIG IRQAHCNIS Sbjct 271 SENFTDNAKTIIVHLNESVEINCTRPYNNVRRSLSIGPGRAF-RTREIIGIIRQAHCNIS 329 Query 301 RTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTY 360 R WN TL+++ +KL E F NK I F SGGD EI THSFNC GEFFYCN++ LFNST+ Sbjct 330 RAKWNNTLKQIVEKLREQFKNKTIVFNHSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTW 389 Query 361 TPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRD 419 N T+ +NS +IT+PCRIKQIINMWQGVG+AMYAPPI+G + C SNITGLLLTRD Sbjct 390 --NGTDIKGDNKNSTLITLPCRIKQIINMWQGVGKAMYAPPIQGQIRCSSNITGLLLTRD 447 Query 420 GGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 GG EIFRP GG+MRDNWRSELYKYKVV I+PLG+APTKAKRRVV+REKR Sbjct 448 GGNSSSREEIFRPGGGNMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKR 501 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_ARV2/SF2] Sequence ID: P03378.1 Length: 855 Range 1: 33 to 509 Score:739 bits(1909), Expect:0.0, Method:Compositional matrix adjust., Identities:355/479(74%), Positives:404/479(84%), Gaps:9/479(1%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDA+AYD EVHNVWATHACVPTDPNPQE+VL NVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDARAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDN----MGGEI 117 NMW+N+MVEQM +DIISLWDQSLKPCVKLTPLCVTL+C++ N + N + GEI Sbjct 93 NMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCTDLGKATNTNSSNWKEEIKGEI 152 Query 118 KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTS-GDYRLINCNTSAITQACPKVS 176 KNCSFN+TT +RDK +K +ALF LD+VP+ N S+ T+ +YRLI+CN S ITQACPKVS Sbjct 153 KNCSFNITTSIRDKIQKENALFRNLDVVPIDNASTTTNYTNYRLIHCNRSVITQACPKVS 212 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYC PAG+AILKCNNKTFNG GPC NVST+QCTHG +P+VSTQLLLNGSLAEEE Sbjct 213 FEPIPIHYCTPAGFAILKCNNKTFNGKGPCTNVSTVQCTHGIRPIVSTQLLLNGSLAEEE 272 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAH 296 ++IRS N T+N KTIIV LNESV INCTRPNNNTRKSI IGPG+AF+ TG IIGDIR+AH Sbjct 273 VVIRSDNFTNNAKTIIVQLNESVAINCTRPNNNTRKSIYIGPGRAFHTTGRIIGDIRKAH 332 Query 297 CNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 CNISR WN TL+++ KKL E F NK I F + SGGD EI HSFNCRGEFFYCNT+ L Sbjct 333 CNISRAQWNNTLEQIVKKLREQFGNNKTIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQL 392 Query 356 FNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLL 415 FN+T+ N TE G N I +PCRIKQIINMWQ VG+AMYAPPI G ++C SNITGLL Sbjct 393 FNNTWRLNHTEGTKG--NDTIILPCRIKQIINMWQEVGKAMYAPPIGGQISCSSNITGLL 450 Query 416 LTRDGGTGM-HDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LTRDGGT + +DTE+FRP GGDMRDNWRSELYKYKV++I+PLGIAPTKAKRRVV+REKR Sbjct 451 LTRDGGTNVTNDTEVFRPGGGDMRDNWRSELYKYKVIKIEPLGIAPTKAKRRVVQREKR 509 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (WMJ1 isolate)] Sequence ID: P31872.1 Length: 856 Range 1: 33 to 510 Score:739 bits(1907), Expect:0.0, Method:Compositional matrix adjust., Identities:359/479(75%), Positives:404/479(84%), Gaps:8/479(1%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAY E H VWATHACVPT+PNPQE+VLENVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYSTEAHKVWATHACVPTNPNPQEVVLENVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTI-DYNNRTDNMGGEIKNC 120 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C ++ I D+ N+T GGE+KNC Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCIDKNITDWENKTIIGGGEVKNC 152 Query 121 SFNMTTEVRDKREKVHALFYRLDIVPLK-NESSNTSGDYRLINCNTSAITQACPKVSFDP 179 SFN+TT +RDK K +ALFY+LD+VP+K N S+T YRLI+CNTS ITQAC KVSF+P Sbjct 153 SFNITTSIRDKVHKEYALFYKLDVVPIKSNNDSSTYTRYRLIHCNTSVITQACSKVSFEP 212 Query 180 IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIII 239 IPIHYCAPAG+AILKCN+K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEEEI+I Sbjct 213 IPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVI 272 Query 240 RSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKS-IRIGPGQAFYATGEIIGDIRQAHCN 298 RS+N TDN KTIIVHLNESVEINCTRPNNN R+ I IGPG+AFY TGEI G+IRQAHCN Sbjct 273 RSENFTDNAKTIIVHLNESVEINCTRPNNNVRRRHIHIGPGRAFY-TGEIRGNIRQAHCN 331 Query 299 ISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNS 358 ISR WN TL+++ +KL E F NK I F SGGD EI THSFNC GEFFYC+++ LFNS Sbjct 332 ISRAKWNNTLKQIVEKLREQFKNKTIVFNHSSGGDPEIVTHSFNCGGEFFYCDSTQLFNS 391 Query 359 TY--TPNSTENITGTE--NSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGL 414 T+ T STE TE IT+PCRIKQIINMWQGVG+AMYAPPI G + C SNITGL Sbjct 392 TWNVTGISTEGNNNTEENGDTITLPCRIKQIINMWQGVGKAMYAPPIGGQIRCSSNITGL 451 Query 415 LLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LLTRDGG EIFRP GG+MRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+REKR Sbjct 452 LLTRDGGNSSSREEIFRPGGGNMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR 510 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (KB-1 isolate)] Sequence ID: P31819.1 Length: 861 Range 1: 39 to 517 Score:734 bits(1894), Expect:0.0, Method:Compositional matrix adjust., Identities:350/481(73%), Positives:407/481(84%), Gaps:11/481(2%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD E HNVWATHACVPTDPNPQE+VL NVTENF Sbjct 39 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEVVLVNVTENF 98 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRT---DNMGGEIK 118 NMW+N+MVEQMH++IISLWDQSLKPCVKLTPLCVTLHC++ NN + + M GEIK Sbjct 99 NMWKNNMVEQMHENIISLWDQSLKPCVKLTPLCVTLHCTDLRNTTNNNSSIEEKMKGEIK 158 Query 119 NCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFD 178 NCSFN+TT +RDK +K +ALFY+LD+VP+ N++++T+ YRLI+C+TS ITQACPKVSF+ Sbjct 159 NCSFNVTTNIRDKVQKEYALFYKLDVVPIDNDNNSTNTCYRLISCDTSVITQACPKVSFE 218 Query 179 PIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEII 238 PIPIHYC PAG+A+LKCNNKTFNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEE ++ Sbjct 219 PIPIHYCTPAGFALLKCNNKTFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEGVV 278 Query 239 IRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCN 298 IRS+N TDNVKTIIV LNE+V+INC RPNN TRK + +GPG+ +Y TGEIIGDIRQAHCN Sbjct 279 IRSENFTDNVKTIIVQLNETVKINCIRPNNKTRKRVTMGPGRVYYTTGEIIGDIRQAHCN 338 Query 299 ISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNS 358 ISR WNKTL+++ KL + F NK I F + SGGD EI H+FNC GEFFYC++S LFNS Sbjct 339 ISRAEWNKTLEQIANKLRKQFENKTIVFNQSSGGDPEIVMHNFNCGGEFFYCDSSQLFNS 398 Query 359 TYTPNST-ENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLT 417 T+ N T N TG EN IT+PCRIKQI+NMWQ VG+AMYAPPI G + C SNITGLLLT Sbjct 399 THLSNGTWWNGTGPEN--ITLPCRIKQIVNMWQEVGKAMYAPPIRGQIRCSSNITGLLLT 456 Query 418 RDGGTGMHDT-----EIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 RDGG ++ EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APT+AKRRVV+REK Sbjct 457 RDGGNTQNNNTNSSIEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREK 516 Query 473 R 473 R Sbjct 517 R 517 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: Q70626.1 Length: 856 Range 1: 34 to 511 Score:729 bits(1883), Expect:0.0, Method:Compositional matrix adjust., Identities:354/483(73%), Positives:403/483(83%), Gaps:16/483(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTENF Sbjct 34 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMG-----GE 116 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV+L C++ D N + + G GE Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGGMIMEKGE 153 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN++T +R K +K +A FY+ DI+P+ N++++ Y L +CNTS ITQACPKVS Sbjct 154 IKNCSFNISTSIRGKVQKEYAFFYKHDIIPIDNDTTS----YTLTSCNTSVITQACPKVS 209 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG KPVVSTQLLLNGSLAEEE Sbjct 210 FEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEE 269 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEIIGDIRQ 294 ++IRS NLTDNVKTIIV LN+SVEINCTRPNNNTRK IRI GPG+ F G+ IG++RQ Sbjct 270 VVIRSANLTDNVKTIIVQLNQSVEINCTRPNNNTRKRIRIQRGPGRTFVTIGK-IGNMRQ 328 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 AHCNISR WN TL+++ KL E + NK I F + SGGDLEI THSFNC GEFFYCN++ Sbjct 329 AHCNISRAKWNNTLKQIASKLREQYGNNKTIIFKQSSGGDLEIVTHSFNCGGEFFYCNST 388 Query 354 SLFNSTY--TPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSN 410 LFNST+ + STE TE S IT+PCRIKQIINMWQ VG+AMYAPPI G + C SN Sbjct 389 QLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQEVGKAMYAPPISGQIRCSSN 448 Query 411 ITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVER 470 ITGLLLTRDGG + +EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+R Sbjct 449 ITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR 508 Query 471 EKR 473 EKR Sbjct 509 EKR 511 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35961.1 Length: 843 Range 1: 33 to 498 Score:729 bits(1883), Expect:0.0, Method:Compositional matrix adjust., Identities:356/481(74%), Positives:396/481(82%), Gaps:24/481(4%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+ LENVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMG------- 114 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C+ D N T+ Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCT----DLRNATNTTSSSWETME 148 Query 115 -GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACP 173 GEIKNCSFN+TT +RDK +K +ALFY LD+VP+ N S YRLI+CNTS ITQACP Sbjct 149 KGEIKNCSFNITTSIRDKVQKEYALFYNLDVVPIDNAS------YRLISCNTSVITQACP 202 Query 174 KVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLA 233 KVSF+PIPIHYCAPAG+AILKCN+K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLA Sbjct 203 KVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLA 262 Query 234 EEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIR 293 EEEI+IRS+N T+N KTIIV LNESV INCTRPNNNTRKSI IGPG+A Y TGEIIGDIR Sbjct 263 EEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSINIGPGRALYTTGEIIGDIR 322 Query 294 QAHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNT 352 QAHCN+S+T W TL+++ KL E F NK I F SGGD EI THSFNC GEFFYCN+ Sbjct 323 QAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNS 382 Query 353 SSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNIT 412 + LF T N T + T + IT+PCRIKQIINMWQ VG+AMYAPPI G + C SNIT Sbjct 383 TQLF----TWNDTRKLNNTGRN-ITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNIT 437 Query 413 GLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 GLLLTRDGG + TEIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+REK Sbjct 438 GLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREK 497 Query 473 R 473 R Sbjct 498 R 498 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:H_90CF056] Sequence ID: O70902.1 Length: 845 Range 1: 29 to 489 Score:729 bits(1882), Expect:0.0, Method:Compositional matrix adjust., Identities:350/470(74%), Positives:394/470(83%), Gaps:17/470(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEAKTTLFCASDAKAY+ E HNVWATHACVPTDPNPQEMV+ENVTE+ Sbjct 29 NLWVTVYYGVPVWKEAKTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEMVMENVTES 88 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNM--GGEIK 118 FNMWEN+MVEQMH DIISLWDQSLKPCVKLTPLCVTL+C+N + +N T +M GGE+ Sbjct 89 FNMWENNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTNVRNNTSNSTSSMEAGGELT 148 Query 119 NCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFD 178 NCSFN+TT +RDK++KVHALFYRLD+VP+ N S+ YRLINCNTS ITQACPKVSF+ Sbjct 149 NCSFNVTTVLRDKQQKVHALFYRLDVVPIDNNST----QYRLINCNTSVITQACPKVSFE 204 Query 179 PIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEII 238 PIPIHYCAPAG+AILKCNNKTFNGTG C NVST+QCTHG +PVVSTQLLLNGSLAEE+II Sbjct 205 PIPIHYCAPAGFAILKCNNKTFNGTGLCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEQII 264 Query 239 IRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCN 298 IR+KN++DN K IIV L V I CTRPNNNTR SI +GPG+AFYATG+IIGDIRQAHCN Sbjct 265 IRTKNISDNTKNIIVQLKTPVNITCTRPNNNTRTSIHLGPGRAFYATGDIIGDIRQAHCN 324 Query 299 ISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNS 358 ISRT WNKTL +V +L H N+ I F +SGGD+E+ THSFNCRGEFFYCNTS LFNS Sbjct 325 ISRTDWNKTLHQVVTQLGIHLNNRTISFKPNSGGDMEVRTHSFNCRGEFFYCNTSGLFNS 384 Query 359 T------YTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNIT 412 + YT N T+ G EN IT+PCRIKQI+NMWQ VGRAMYAPPI+G + C SNIT Sbjct 385 SWEMHTNYTSNDTK---GNEN--ITLPCRIKQIVNMWQRVGRAMYAPPIQGNIMCVSNIT 439 Query 413 GLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTK 462 GL+LT D G + FRP GGDMRDNWRSELYKYKVV+I+PLGIAPTK Sbjct 440 GLILTIDEGNASAENYTFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTK 489 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 BH10] Sequence ID: P03375.1 Length: 856 Range 1: 34 to 511 Score:729 bits(1881), Expect:0.0, Method:Compositional matrix adjust., Identities:353/484(73%), Positives:403/484(83%), Gaps:18/484(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTENF Sbjct 34 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYN-----NRTDNMGGE 116 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV+L C++ D N R GE Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGE 153 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN++T +R K +K +A FY+LDI+P+ N++++ Y L +CNTS ITQACPKVS Sbjct 154 IKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTS----YTLTSCNTSVITQACPKVS 209 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEEE Sbjct 210 FEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEE 269 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEIIGDIRQ 294 ++IRS N TDN KTIIV LN+SVEINCTRPNNNTRKSIRI GPG+AF G+ IG++RQ Sbjct 270 VVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGK-IGNMRQ 328 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 AHCNISR WN TL+++ KL E F NK I F + SGGD EI THSFNC GEFFYCN++ Sbjct 329 AHCNISRAKWNNTLKQIDSKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNST 388 Query 354 SLFNSTYTPNSTENITGTENS----IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRS 409 LFNST+ NST + G+ N+ IT+PCRIKQIINMWQ VG+AMYAPPI G + C S Sbjct 389 QLFNSTWF-NSTWSTKGSNNTEGSDTITLPCRIKQIINMWQEVGKAMYAPPISGQIRCSS 447 Query 410 NITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVE 469 NITGLLLTRDGG +++EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+ Sbjct 448 NITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQ 507 Query 470 REKR 473 REKR Sbjct 508 REKR 511 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P04579.1 Length: 865 Range 1: 32 to 519 Score:727 bits(1877), Expect:0.0, Method:Compositional matrix adjust., Identities:351/489(72%), Positives:402/489(82%), Gaps:17/489(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 +LWVTVYYGVPVWKEA TTLFCAS+AKAY EVHNVWA HACVPTDPNPQE++LENVTEN Sbjct 32 DLWVTVYYGVPVWKEATTTLFCASEAKAYKTEVHNVWAKHACVPTDPNPQEVLLENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGG----- 115 FNMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C++ ++ N T + GG Sbjct 92 FNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDANLNGTNVTSSSGGTMMEN 151 Query 116 -EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLK--------NESSNTS-GDYRLINCNT 165 EIKNCSF +TT RDK +K +ALFY+LD+VP++ N S+NTS G+Y LI+CN+ Sbjct 152 GEIKNCSFQVTTSRRDKTQKKYALFYKLDVVPIEKGNISPKNNTSNNTSYGNYTLIHCNS 211 Query 166 SAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQ 225 S ITQACPKVSF+PIPIHYC PAG+AILKCN+K FNGTGPC NVST+QCTHG +PVVSTQ Sbjct 212 SVITQACPKVSFEPIPIHYCTPAGFAILKCNDKKFNGTGPCKNVSTVQCTHGIRPVVSTQ 271 Query 226 LLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYAT 285 LLLNGSLAEEE++IRS+N TDNVKTIIV LN SV+INCTRPNNNTRKSI GPG+ YAT Sbjct 272 LLLNGSLAEEEVVIRSENFTDNVKTIIVQLNASVQINCTRPNNNTRKSITKGPGRVIYAT 331 Query 286 GEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRG 345 G+IIGDIR+AHCN+SR WN TL++V KL E F NK I F SGGD EI HSFNC G Sbjct 332 GQIIGDIRKAHCNLSRAQWNNTLKQVVTKLREQFDNKTIVFTSSSGGDPEIVLHSFNCGG 391 Query 346 EFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGIL 405 EFFYCNT+ LFNST+ N TG N IT+PCRIKQI+NMWQ VG+AMYAPPI G + Sbjct 392 EFFYCNTTQLFNSTWNSTEGSNNTGG-NDTITLPCRIKQIVNMWQEVGKAMYAPPISGQI 450 Query 406 TCRSNITGLLLTRDGGTGMHD-TEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAK 464 C SNITGLLLTRDGG + TEIFR GG+MRDNWRSELYKYKVV I+PLG+APT+AK Sbjct 451 KCISNITGLLLTRDGGEDTTNTTEIFRLGGGNMRDNWRSELYKYKVVRIEPLGVAPTRAK 510 Query 465 RRVVEREKR 473 RRVV+REKR Sbjct 511 RRVVQREKR 519 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (ZAIRE 6 ISOLATE)] Sequence ID: P04580.1 Length: 855 Range 1: 32 to 510 Score:727 bits(1876), Expect:0.0, Method:Compositional matrix adjust., Identities:352/481(73%), Positives:396/481(82%), Gaps:10/481(2%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAK+Y E HN+WATHACVPTDPNPQE+ LENVTEN Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDAKSYKTEAHNIWATHACVPTDPNPQEIELENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDY------NNRTDNMG 114 FNMW N+MVEQ+H+DIISLWDQSLKPCVKLTPLCVTL+C++ + ++ N T+++ Sbjct 92 FNMWRNNMVEQIHEDIISLWDQSLKPCVKLTPLCVTLNCTDESDEWMGNVTGKNVTEDI- 150 Query 115 GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPK 174 +KNCSFN+TT VRDK ++VHALFYRLDIVP+ N++S S +YRLINCNTSAITQACPK Sbjct 151 -RMKNCSFNITTVVRDKTKQVHALFYRLDIVPIDNDNSTNSTNYRLINCNTSAITQACPK 209 Query 175 VSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAE 234 VSF+PIPIHYCAPAG+AILKC +K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAE Sbjct 210 VSFEPIPIHYCAPAGFAILKCRDKRFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAE 269 Query 235 EEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQ 294 EEIIIRS+NLT+N K IIV LNESV INCTRP NTR+S IG GQA Y T I Q Sbjct 270 EEIIIRSENLTNNAKIIIVQLNESVAINCTRPYKNTRQSTPIGLGQALYTTRGRTKIIGQ 329 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSS 354 AHCNIS+ WNKTLQ V KL I F SGGD EITTHSFNC GEFFYCNTS Sbjct 330 AHCNISKEDWNKTLQRVAIKLGNLLNKTTIIFKPSSGGDAEITTHSFNCGGEFFYCNTSG 389 Query 355 LFNSTYTPNSTE--NITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNIT 412 LFNST+ N++E N T ++N +IT+ CRIKQIINMWQGVG+AMYAPPIEG + C SNIT Sbjct 390 LFNSTWNINNSEGANSTESDNKLITLQCRIKQIINMWQGVGKAMYAPPIEGQINCSSNIT 449 Query 413 GLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 GLLLTRDGGT E FRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVVEREK Sbjct 450 GLLLTRDGGTNNSSNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVEREK 509 Query 473 R 473 R Sbjct 510 R 510 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_HXB2R] Sequence ID: P04578.2 Length: 856 Range 1: 34 to 511 Score:726 bits(1875), Expect:0.0, Method:Compositional matrix adjust., Identities:353/483(73%), Positives:401/483(83%), Gaps:16/483(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTENF Sbjct 34 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYN-----NRTDNMGGE 116 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV+L C++ D N R GE Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGE 153 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN++T +R K +K +A FY+LDI+P+ N++++ Y+L +CNTS ITQACPKVS Sbjct 154 IKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTS----YKLTSCNTSVITQACPKVS 209 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEEE Sbjct 210 FEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEE 269 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEIIGDIRQ 294 ++IRS N TDN KTIIV LN SVEINCTRPNNNTRK IRI GPG+AF G+ IG++RQ Sbjct 270 VVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGK-IGNMRQ 328 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 AHCNISR WN TL+++ KL E F NK I F + SGGD EI THSFNC GEFFYCN++ Sbjct 329 AHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNST 388 Query 354 SLFNSTY--TPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSN 410 LFNST+ + STE TE S IT+PCRIKQIINMWQ VG+AMYAPPI G + C SN Sbjct 389 QLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSN 448 Query 411 ITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVER 470 ITGLLLTRDGG +++EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+R Sbjct 449 ITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR 508 Query 471 EKR 473 EKR Sbjct 509 EKR 511 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (SF33 ISOLATE)] Sequence ID: P19549.1 Length: 852 Range 1: 32 to 506 Score:725 bits(1871), Expect:0.0, Method:Compositional matrix adjust., Identities:351/479(73%), Positives:404/479(84%), Gaps:10/479(2%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWK+A TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTEN Sbjct 32 NLWVTVYYGVPVWKDATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGG----- 115 FNMW+N+MV+QMH+DI+SLWDQSLKPCVKLTPLCVTL+C++ + N ++ GG Sbjct 92 FNMWKNNMVDQMHEDIVSLWDQSLKPCVKLTPLCVTLNCTDYLGNATNTNNSSGGTVEKE 151 Query 116 EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 EIKNCSFN+TT +RDK +K +A FY+LD+VP+ ++++NTS YRLI+CN+S ITQ CPKV Sbjct 152 EIKNCSFNITTGIRDKVQKAYAYFYKLDVVPIDDDNTNTS--YRLIHCNSSVITQTCPKV 209 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF+PIPIHYCAPAG+AILKCNNK F+G G C NVST+QCTHG KPVVSTQLLLNGSLAEE Sbjct 210 SFEPIPIHYCAPAGFAILKCNNKKFSGKGQCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE 269 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQA 295 E++IRS N T+N KTI+V LN SVEINCTRPNNN R+ I GPG+ Y TGEIIGDIR+A Sbjct 270 EVVIRSDNFTNNAKTILVQLNVSVEINCTRPNNNRRRRITSGPGKVLYTTGEIIGDIRKA 329 Query 296 HCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 +CNISR WNKTL++V KL E F NK I F + SGGD EI HSFNCRGEFFYCNT+ L Sbjct 330 YCNISRAKWNKTLEQVATKLREQFGNKTIVFKQSSGGDPEIVMHSFNCRGEFFYCNTTKL 389 Query 356 FNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLL 415 FNST+ NST N TG N IT+PCRIKQIINMWQ VG+AMYAPPIEG + C SNITGLL Sbjct 390 FNSTWNENSTWNATG--NDTITLPCRIKQIINMWQEVGKAMYAPPIEGQIRCSSNITGLL 447 Query 416 LTRDGGTGMHD-TEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LTRDGG + TEIFRP GG+M+DNWRSELYKYKVV+I+PLG+APTKAKRRVV+REKR Sbjct 448 LTRDGGGDKNSTTEIFRPAGGNMKDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR 506 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (ZAIRE HZ321 ISOLATE)] Sequence ID: P05881.1 Length: 856 Range 1: 32 to 511 Score:724 bits(1869), Expect:0.0, Method:Compositional matrix adjust., Identities:351/481(73%), Positives:397/481(82%), Gaps:9/481(1%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWK+A+TTLFCASDAKAYD E HNVWATHACVPTDPNPQE+ L NVTE Sbjct 32 NLWVTVYYGVPVWKDAETTLFCASDAKAYDTEKHNVWATHACVPTDPNPQELSLGNVTEK 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDN--MGGEIK 118 F+MW+N+MVEQMH+D+ISLWDQSLKPCVKLTPLCVTL C N TI NN + M EIK Sbjct 92 FDMWKNNMVEQMHEDVISLWDQSLKPCVKLTPLCVTLSCHNITIKDNNTNVDTEMKEEIK 151 Query 119 NCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSN-TSGDYRLINCNTSAITQACPKVSF 177 NCS+NMTTE+RDK+ K+++LFYRLDIVP+ SSN S YRLINCNTSAITQACPKVSF Sbjct 152 NCSYNMTTELRDKQRKIYSLFYRLDIVPIGGNSSNGDSSKYRLINCNTSAITQACPKVSF 211 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 +PIPIHYCAPAG+AILKC ++ F G GPC NVST+QCTHG +PVVSTQLLLNGSLAE E+ Sbjct 212 EPIPIHYCAPAGFAILKCRDEEFEGKGPCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEV 271 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHC 297 IRS+N TDN K IIV L + V I C RPNNNTRKSI IGPG+AF+ATG+IIGDIRQAHC Sbjct 272 RIRSENFTDNAKIIIVQLVKPVNITCMRPNNNTRKSISIGPGRAFFATGDIIGDIRQAHC 331 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKA--IKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 N+SRT WN TL +V +L +HF N + I FA SGGD+EITTHSFNC GEFFYCNTS L Sbjct 332 NVSRTEWNDTLSKVAAQLRKHFVNTSTDIIFANSSGGDVEITTHSFNCGGEFFYCNTSGL 391 Query 356 FNSTY---TPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNIT 412 FN T+ T N+T I T N I +PCRIKQI+NMWQ VG+AMYAPPI+G++ C SNIT Sbjct 392 FNGTWLNGTSNNTWKID-TVNDTIILPCRIKQIVNMWQRVGQAMYAPPIKGVIKCVSNIT 450 Query 413 GLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 G+LLTRDG E FRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV REK Sbjct 451 GILLTRDGVGNNTSNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVAREK 510 Query 473 R 473 R Sbjct 511 R 511 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_89.6] Sequence ID: Q73372.2 Length: 853 Range 1: 34 to 508 Score:724 bits(1868), Expect:0.0, Method:Compositional matrix adjust., Identities:351/480(73%), Positives:399/480(83%), Gaps:14/480(2%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 WVT+YYGVPVW+EA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTENFN Sbjct 34 WVTIYYGVPVWREATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFN 93 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNR---TDNMG----G 115 MW+N+MV+QMH+DIISLWD+SLKPCVKLTPLCVTL+C+N I N + + G G Sbjct 94 MWKNNMVDQMHEDIISLWDESLKPCVKLTPLCVTLNCTNLNITKNTTNPTSSSWGMMEKG 153 Query 116 EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 EIKNCSF +TT +R+K +K +ALF RLD+VP++N ++NT YRLI+CNTS ITQACPKV Sbjct 154 EIKNCSFYITTSIRNKVKKEYALFNRLDVVPIEN-TNNTK--YRLISCNTSVITQACPKV 210 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF PIPIHYC PAG+A+LKCNNKTFNG+GPC NVST+QCTHG +PVVSTQLLLNGSLAEE Sbjct 211 SFQPIPIHYCVPAGFAMLKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEE 270 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQA 295 +I+IRS+N TDN KTIIV LNESV INCTRPNNNTR+ + IGPG+AFYA IIGDIRQA Sbjct 271 DIVIRSENFTDNAKTIIVQLNESVVINCTRPNNNTRRRLSIGPGRAFYARRNIIGDIRQA 330 Query 296 HCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 HCNISR WN TLQ++ KL E F NK I F + SGGD EI HSFNC GEFFYCNT+ L Sbjct 331 HCNISRAKWNNTLQQIVIKLREKFRNKTIAFNQSSGGDPEIVMHSFNCGGEFFYCNTAQL 390 Query 356 FNSTYTPNSTENITGTE-NSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGL 414 FNST+ N T GTE N IIT+ CRIKQIINMWQ VG+AMYAPPI G + C SNITGL Sbjct 391 FNSTW--NVTGGTNGTEGNDIITLQCRIKQIINMWQKVGKAMYAPPITGQIRCSSNITGL 448 Query 415 LLTRDGGTGMH-DTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LLTRDGG +TEIFRP GGDMRDNWRSELYKYKVV I+P+G+APT+AKRR V+REKR Sbjct 449 LLTRDGGNSTETETEIFRPGGGDMRDNWRSELYKYKVVRIEPIGVAPTRAKRRTVQREKR 508 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY2.2 Length: 842 Range 1: 33 to 497 Score:723 bits(1867), Expect:0.0, Method:Compositional matrix adjust., Identities:347/477(73%), Positives:395/477(82%), Gaps:17/477(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TLFCASDAKAY+ EVHNVWATHACVPTDPNPQE+ +ENVTENF Sbjct 33 LWVTVYYGVPVWKEATPTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEVEMENVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNR--TIDYNNRTDNM--GGEI 117 NMW+N+MVEQMH DIISLWD+SLKPCV+LTPLCVTL+C++ T NN T + EI Sbjct 93 NMWKNNMVEQMHTDIISLWDESLKPCVELTPLCVTLNCTDYKGTNSTNNATSTVVSPAEI 152 Query 118 KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSF 177 KNCSFN+TTE++DK++K ALFYRLD++PL E +N+S +YRLINCNTS ITQ CPKV+F Sbjct 153 KNCSFNITTEIKDKKKKESALFYRLDVLPLNGEGNNSSTEYRLINCNTSTITQTCPKVTF 212 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 +PIPIHYCAPAG+AILKC +K FNGTGPC NVST+QCTHG KPVVSTQLLLNGSLAEEEI Sbjct 213 EPIPIHYCAPAGFAILKCKDKRFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEI 272 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHC 297 IIRS+N+TDN K IIV LNE+V+INCTRPNNNTRKSI +GPG+AFY TG+IIGDIRQAHC Sbjct 273 IIRSENITDNTKNIIVQLNETVQINCTRPNNNTRKSIHMGPGKAFYTTGDIIGDIRQAHC 332 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKAIKFA-KHSGGDLEITTHSFNCRGEFFYCNTSSLF 356 NIS WN TL V +KL EHF N I F + GGD EI TH FNC GEFFYCNT+ LF Sbjct 333 NISGEKWNMTLSRVKEKLKEHFKNGTITFKPPNPGGDPEILTHMFNCAGEFFYCNTTKLF 392 Query 357 NSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLL 416 N T EN IT+PCRIKQIINMWQ VG+A+YAPPI G + C SNITG++L Sbjct 393 NET-----------GENGTITLPCRIKQIINMWQKVGKAIYAPPIAGSINCSSNITGMIL 441 Query 417 TRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 TRDGG H+ E FRP GGDMRDNWRSELYKYKVV+I+PLGIAPT+A+RRVV+REKR Sbjct 442 TRDGGNNTHN-ETFRPGGGDMRDNWRSELYKYKVVQIEPLGIAPTRARRRVVQREKR 497 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (BH8 ISOLATE)] Sequence ID: P04582.1 Length: 851 Range 1: 34 to 506 Score:723 bits(1865), Expect:0.0, Method:Compositional matrix adjust., Identities:347/480(72%), Positives:398/480(82%), Gaps:15/480(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVY+GVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTENF Sbjct 34 LWVTVYFGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYN-----NRTDNMGGE 116 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV+L C++ D N R GE Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGE 153 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN++T R K +K +A FY+LDI+P+ N++++ Y L +CNTS ITQACPKVS Sbjct 154 IKNCSFNISTSKRGKVQKEYAFFYKLDIIPIDNDTTS----YTLTSCNTSVITQACPKVS 209 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEEE Sbjct 210 FEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEE 269 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEIIGDIRQ 294 ++IRS N TDN KTIIV L+ SVEINCTRPNNNTRK IRI GPG+AF G+ IG++RQ Sbjct 270 VVIRSVNFTDNAKTIIVQLDTSVEINCTRPNNNTRKKIRIQRGPGRAFVTIGK-IGNMRQ 328 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 AHCNISR WN TL+++ KL E F NK I F + SGGD EI THSFNC GEFFYCN++ Sbjct 329 AHCNISRAKWNATLKQIDSKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNST 388 Query 354 SLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITG 413 LFNST++ + N G++ IT+PCRIKQIINMWQ VG+AMYAPPI G + C SNITG Sbjct 389 QLFNSTWSTKGSNNTEGSDT--ITLPCRIKQIINMWQEVGKAMYAPPISGQIRCSSNITG 446 Query 414 LLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LLLTRDGG +++EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+REKR Sbjct 447 LLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR 506 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (JH3 ISOLATE)] Sequence ID: P12489.1 Length: 867 Range 1: 33 to 523 Score:723 bits(1865), Expect:0.0, Method:Compositional matrix adjust., Identities:349/495(71%), Positives:402/495(81%), Gaps:27/495(5%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VLENVTE F Sbjct 33 LWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLENVTEKF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRT----------- 110 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C ID+ N T Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNC----IDWGNDTSPNATNTTSSG 148 Query 111 -DNM-GGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNES-----SNTSGDYRLINC 163 + M GE+KNCSFN+TT +RDK +K HALFY+ D+VP+ N + ++ S YRLI+C Sbjct 149 GEKMEKGEMKNCSFNITTSIRDKVQKEHALFYKHDVVPINNSTKDNIKNDNSTRYRLISC 208 Query 164 NTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVS 223 NTS ITQACPK+SF+PIPIHYCAPAG+AI+KCN+K FNGTGPC NVST+QCTHG KPVVS Sbjct 209 NTSVITQACPKISFEPIPIHYCAPAGFAIIKCNDKKFNGTGPCTNVSTVQCTHGIKPVVS 268 Query 224 TQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFY 283 TQLLLNGSLAEEE++IRS+N TDN KTIIV L E V INCTRP+ TR+ I IGPG+AFY Sbjct 269 TQLLLNGSLAEEEVVIRSENFTDNAKTIIVQLKEPVVINCTRPSKTTRRRIHIGPGRAFY 328 Query 284 ATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNC 343 T +I GD+RQAHCNI+R WN TL+++ KL + F NK I F + SGGD EI HSFNC Sbjct 329 TTKQIAGDLRQAHCNINRARWNATLKQIVGKLRKQFVNKTIVFNRSSGGDPEIVMHSFNC 388 Query 344 RGEFFYCNTSSLFNSTYTPNSTENIT-GTENS----IITIPCRIKQIINMWQGVGRAMYA 398 GEFFYCN++ LFNST+ NST N T G+ N+ IT+PCRIKQIINMWQ VG+AMYA Sbjct 389 GGEFFYCNSTQLFNSTWLSNSTWNDTEGSNNTGGNDTITLPCRIKQIINMWQEVGKAMYA 448 Query 399 PPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGI 458 PPIEG + C SNITGLLLTRDGG ++TE FRP GG+MRDNWRSELYKYKVV+I+ LG+ Sbjct 449 PPIEGQIRCSSNITGLLLTRDGGDNQNETETFRPGGGNMRDNWRSELYKYKVVKIELLGV 508 Query 459 APTKAKRRVVEREKR 473 APTKAKRRVV+REKR Sbjct 509 APTKAKRRVVQREKR 523 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (CDC-451 ISOLATE)] Sequence ID: P05879.1 Length: 868 Range 1: 34 to 522 Score:721 bits(1862), Expect:0.0, Method:Compositional matrix adjust., Identities:344/491(70%), Positives:401/491(81%), Gaps:20/491(4%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAKAYD E HNVWATHACVPT+PNPQE+VLENVTEN Sbjct 34 NLWVTVYYGVPVWKEATTTLFCASDAKAYDTEAHNVWATHACVPTNPNPQEVVLENVTEN 93 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMG------ 114 FNMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C++ + T + Sbjct 94 FNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLNTNNTTNTTELSIIVVWE 153 Query 115 ----GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPL---KNESSNTSGDYRLINCNTSA 167 GE++NCSFN+TT +RDK ++ +ALFY+LD+ P+ KN ++NT YRLINCNTS Sbjct 154 QRGKGEMRNCSFNITTSIRDKVQREYALFYKLDVEPIDDNKNTTNNTK--YRLINCNTSV 211 Query 168 ITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLL 227 ITQACPKVSF+PIPIHYC P G+A+LKCN+K FNGTGPC NVST+QCTHG +PVVSTQLL Sbjct 212 ITQACPKVSFEPIPIHYCTPTGFALLKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLL 271 Query 228 LNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGE 287 LNGSLAEEE++IRS+N T+N KTIIV LN SVEINCTRPNN+TRK + +GPG+ +Y TGE Sbjct 272 LNGSLAEEEVVIRSENFTNNAKTIIVQLNVSVEINCTRPNNHTRKRVTLGPGRVWYTTGE 331 Query 288 IIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEF 347 I+G+IRQAHCNISR WN TLQ++ L E F NK I F + SGGD EI HSFNC GEF Sbjct 332 ILGNIRQAHCNISRAQWNNTLQQIATTLREQFGNKTIAFNQSSGGDPEIVMHSFNCGGEF 391 Query 348 FYCNTSSLFNSTY--TPNSTENITGTE---NSIITIPCRIKQIINMWQGVGRAMYAPPIE 402 FYCN++ LFNS + T N T ++T + IIT+PCRIKQIIN WQ VG+AMYA PI+ Sbjct 392 FYCNSTQLFNSAWNVTSNGTWSVTRKQKDTGDIITLPCRIKQIINRWQVVGKAMYALPIK 451 Query 403 GILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTK 462 G++ C SNITGLLLTRDGG TEIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTK Sbjct 452 GLIRCSSNITGLLLTRDGGGENQTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTK 511 Query 463 AKRRVVEREKR 473 AKRRVV+REKR Sbjct 512 AKRRVVQREKR 522 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (HXB3 ISOLATE)] Sequence ID: P04624.3 Length: 856 Range 1: 34 to 511 Score:719 bits(1857), Expect:0.0, Method:Compositional matrix adjust., Identities:351/483(73%), Positives:397/483(82%), Gaps:16/483(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHA VPTDPNPQE+VL NVTENF Sbjct 34 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHAGVPTDPNPQEVVLVNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYN-----NRTDNMGGE 116 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV+L C++ D N R GE Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGE 153 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN++T +R K +K +A FY+LDI+P+ N++++ Y L +CNTS ITQACPKVS Sbjct 154 IKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTS----YTLTSCNTSVITQACPKVS 209 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 F+PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEEE Sbjct 210 FEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEE 269 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEIIGDIRQ 294 ++IRS N TDN KTIIV LN SVEINCTRPNNNTRK IRI GPG+AF G+ IG++RQ Sbjct 270 VVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKKIRIQRGPGRAFVTIGK-IGNMRQ 328 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 AHCNISR WN TL+++ KL E F NK I F + SGGD EI THSFNC GEFFYCN++ Sbjct 329 AHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNST 388 Query 354 SLFNSTY--TPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSN 410 LFNST+ + STE TE S IT+PCRIKQ INMWQ VG+AMYAPPI G + C SN Sbjct 389 QLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSN 448 Query 411 ITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVER 470 ITGLLLTRDGG + +EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRVV+R Sbjct 449 ITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR 508 Query 471 EKR 473 EKR Sbjct 509 EKR 511 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03377.1 Length: 861 Range 1: 34 to 516 Score:719 bits(1855), Expect:0.0, Method:Compositional matrix adjust., Identities:352/488(72%), Positives:400/488(81%), Gaps:21/488(4%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL NVTENF Sbjct 34 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMG------- 114 NMW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV+L C++ N + N Sbjct 94 NMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMM 153 Query 115 ---GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQA 171 GEIKNCSFN++T +R K +K +A FY+LDI+P+ N++++ Y L +CNTS ITQA Sbjct 154 MEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTS----YTLTSCNTSVITQA 209 Query 172 CPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGS 231 CPKVSF+PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG +PVVSTQLLLNGS Sbjct 210 CPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGS 269 Query 232 LAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEII 289 LAEEE++IRS N TDN KTIIV LN+SVEINCTRPNNNTRKSIRI GPG+AF G+ I Sbjct 270 LAEEEVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGK-I 328 Query 290 GDIRQAHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFF 348 G++RQAHCNISR WN TL+++ KL E F NK I F + SGGD EI THSFNC GEFF Sbjct 329 GNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFF 388 Query 349 YCNTSSLFNSTY--TPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGIL 405 YCN++ LFNST+ + STE TE S IT+PCRIKQ INMWQ VG+AMYAPPI G + Sbjct 389 YCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQI 448 Query 406 TCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 C SNITGLLLTRDGG + +EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKR Sbjct 449 RCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR 508 Query 466 RVVEREKR 473 RVV+REKR Sbjct 509 RVVQREKR 516 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F1_93BR020] Sequence ID: O89292.1 Length: 846 Range 1: 32 to 501 Score:719 bits(1855), Expect:0.0, Method:Compositional matrix adjust., Identities:350/480(73%), Positives:389/480(81%), Gaps:17/480(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAK+Y+ E HNVWATHACVPTDPNPQE+VLENVTE Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDAKSYEKEAHNVWATHACVPTDPNPQEVVLENVTER 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC-------SNRTIDYNNRTDNM 113 FNMWEN+MVEQMH DIISLWDQSLKPCVKLTPLCVTL C +N TI N+ Sbjct 92 FNMWENNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLDCRNIATNGTNDTIAINDTLKED 151 Query 114 GGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACP 173 I+NCSFN TTE+RDK+ KVHALFY+LDIV + + + T YRLINC+ S ITQACP Sbjct 152 PEAIQNCSFNTTTEIRDKQLKVHALFYKLDIVQINKDDNRT---YRLINCDASTITQACP 208 Query 174 KVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLA 233 KVS+DPIPIHYCAPAGYAILKCN K F GTG C NVST+QCTHG KPVVSTQLLLNGSLA Sbjct 209 KVSWDPIPIHYCAPAGYAILKCNEKNFTGTGSCKNVSTVQCTHGIKPVVSTQLLLNGSLA 268 Query 234 EEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIR 293 E EI+IRS+N++DN KTIIVHLNESV+INCTRPNNNTRK I +GPG+ FY TGEIIGDIR Sbjct 269 EGEIVIRSQNISDNAKTIIVHLNESVQINCTRPNNNTRKRISLGPGRVFYTTGEIIGDIR 328 Query 294 QAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 +AHCN+S T W TL +V KL +FPN IKF SGGDLEIT H+FNC GEFFYCNT Sbjct 329 KAHCNVSGTQWRNTLAKVKAKLGSYFPNATIKFNSSSGGDLEITRHNFNCMGEFFYCNTD 388 Query 354 SLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITG 413 LFN T N TG N IT+PCRIKQI+NMWQ VGRAMYA PI G +TC SNITG Sbjct 389 ELFNDT-----KFNDTGF-NGTITLPCRIKQIVNMWQEVGRAMYANPIAGNITCNSNITG 442 Query 414 LLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LLLTRDGG + E FRP GG+M+DNWRSELYKYKVVEI+PLG+APTKAKR+VV+RE+R Sbjct 443 LLLTRDGGLNSTN-ETFRPGGGNMKDNWRSELYKYKVVEIEPLGVAPTKAKRQVVKRERR 501 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (Z-84 ISOLATE)] Sequence ID: P05882.1 Length: 863 Range 1: 32 to 518 Score:717 bits(1852), Expect:0.0, Method:Compositional matrix adjust., Identities:350/488(72%), Positives:403/488(82%), Gaps:16/488(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 +LWVTVYYGVPVWKEA TTLFCASDAK+Y+ E HN+WATHACVPTDPNP+E+ +ENVTEN Sbjct 32 DLWVTVYYGVPVWKEATTTLFCASDAKSYEPEAHNIWATHACVPTDPNPREIEMENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN-------RTIDYNNRTDNM 113 FNMW+N+MVEQMH+DIISLWDQ+LKPCVKLTPLCVTL+C+N + N+ + M Sbjct 92 FNMWKNNMVEQMHEDIISLWDQNLKPCVKLTPLCVTLNCTNAGGNKTTNGNNTTNQEEQM 151 Query 114 --GGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNE-SSNTSG----DYRLINCNTS 166 GE+KNCSFN+TT + DK+++VHALFYRLD+VP+ ++ S+NTS +YRLINCNTS Sbjct 152 MEKGEMKNCSFNITTVISDKKKQVHALFYRLDVVPIDDDNSANTSNTNYTNYRLINCNTS 211 Query 167 AITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQL 226 AITQACPKV+F+PIPIHYCAPAG+AILKC +K FNGTGPC VST+QCTHG +PVVSTQL Sbjct 212 AITQACPKVTFEPIPIHYCAPAGFAILKCKDKKFNGTGPCKKVSTVQCTHGIRPVVSTQL 271 Query 227 LLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNN-TRKSIRIGPGQAFYAT 285 LLNGSLAEEEIIIRS+NLT+NVKTIIVHLNESVEINCTRP+N TR+S IG GQA Y T Sbjct 272 LLNGSLAEEEIIIRSENLTNNVKTIIVHLNESVEINCTRPDNKITRQSTPIGLGQALYTT 331 Query 286 GEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRG 345 I GDIRQA+CNIS AWNKTLQ+V KKL + I F +GGD EITTHSFNC G Sbjct 332 -RIKGDIRQAYCNISAAAWNKTLQQVAKKLGDLLNQTTIIFKPPAGGDPEITTHSFNCGG 390 Query 346 EFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGIL 405 EFFYCNTS LFNST+ ++ N T I +PCRIKQIINMWQGVG+AMYAPPIEG++ Sbjct 391 EFFYCNTSRLFNSTWNSSTWNNDTLNSEGTIKLPCRIKQIINMWQGVGKAMYAPPIEGLI 450 Query 406 TCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 C SNITGLLLTRDGG E FRP GGDM+DNWR+ELYKYKVV I+PLGIAPT+AKR Sbjct 451 KCTSNITGLLLTRDGGVNNSTNETFRPGGGDMKDNWRNELYKYKVVRIEPLGIAPTRAKR 510 Query 466 RVVEREKR 473 RVVEREKR Sbjct 511 RVVEREKR 518 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (SC ISOLATE)] Sequence ID: P05878.1 Length: 856 Range 1: 33 to 510 Score:717 bits(1852), Expect:0.0, Method:Compositional matrix adjust., Identities:347/486(71%), Positives:395/486(81%), Gaps:22/486(4%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHN+WATHACVPTDPNPQE+VL NVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNIWATHACVPTDPNPQEVVLGNVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNN---------RTDN 112 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C+N D + R Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNLRNDTSTNATNTTSSNRGKM 152 Query 113 MGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQAC 172 GGE+ NCSFN+TT +R K +K +ALFY+LD+VP+ N S Y LINCNTS ITQAC Sbjct 153 EGGEMTNCSFNITTSIRSKVQKEYALFYKLDVVPIDNTS------YTLINCNTSVITQAC 206 Query 173 PKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSL 232 PKVSF+PIPIHYCA +AIL CNNK FNGTGPC NVST+QCTHG +PVVST LLLNGSL Sbjct 207 PKVSFEPIPIHYCA-RWFAILNCNNKKFNGTGPCTNVSTVQCTHGIRPVVSTHLLLNGSL 265 Query 233 AEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDI 292 AEEE+++RS+N TDN KTIIV L E+VEINCTRPNNNT +SI IGPG+AFYATG+IIGDI Sbjct 266 AEEEVVLRSENFTDNAKTIIVQLKEAVEINCTRPNNNTTRSIHIGPGRAFYATGDIIGDI 325 Query 293 RQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNT 352 RQAHCNISR WN TL+++ KL + F NK I F + SGGD EI HSFNC GEFFYCN+ Sbjct 326 RQAHCNISRAKWNNTLKQIVIKLRDQFENKTIIFNRSSGGDPEIVMHSFNCGGEFFYCNS 385 Query 353 SSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNIT 412 + LF+ST+ N TG N IT+PCRIK+IINMWQ VG+AMYAPPI+G + C SNIT Sbjct 386 TQLFSSTWNGTEGSNNTGG-NDTITLPCRIKEIINMWQEVGKAMYAPPIKGQVKCSSNIT 444 Query 413 GLLLTRDGGTGMH-----DTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRV 467 GLLLTRDGG + +TEIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKRRV Sbjct 445 GLLLTRDGGNSKNGSKNENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRV 504 Query 468 VEREKR 473 V+REKR Sbjct 505 VQREKR 510 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12487.1 Length: 853 Range 1: 32 to 508 Score:717 bits(1851), Expect:0.0, Method:Compositional matrix adjust., Identities:352/482(73%), Positives:393/482(81%), Gaps:14/482(2%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAK+Y E HN+WATHACVPTDPNPQE+ LENVTEN Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDAKSYKTEAHNIWATHACVPTDPNPQEIELENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC-----SNRTIDYNNRTDNMGG 115 FNMW N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C N T+ NN T+ + Sbjct 92 FNMWRNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCIDEVMENVTMKNNNVTEEI-- 149 Query 116 EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 +KNCSFN+TT VRDK ++VHALFYRLDIVP+ N++S S +YRLINCNTSAITQACPKV Sbjct 150 RMKNCSFNITTVVRDKTKQVHALFYRLDIVPIDNDNSTNSTNYRLINCNTSAITQACPKV 209 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF+PIPIHYCAPAG+AILKC +K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEE Sbjct 210 SFEPIPIHYCAPAGFAILKCRDKRFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEE 269 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATG--EIIGDIR 293 EIIIRS+NLT+N K IIV LNESV INCTRP N R+ IG GQA Y T IIG Sbjct 270 EIIIRSENLTNNAKIIIVQLNESVAINCTRPYRNIRQRTSIGLGQALYTTKTRSIIG--- 326 Query 294 QAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 QA+CNIS+ WNKTLQ+V KL I F SGGD EITTHSFNC GEFFYCNTS Sbjct 327 QAYCNISKNEWNKTLQQVAIKLGNLLNKTTIIFKPSSGGDPEITTHSFNCGGEFFYCNTS 386 Query 354 SLFNSTYTPNSTE--NITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNI 411 LFNST+ + +E N T +++ IT+ CRIKQIINMWQGVG+AMYAPPIEG + C SNI Sbjct 387 GLFNSTWDISKSEWANSTESDDKPITLQCRIKQIINMWQGVGKAMYAPPIEGQINCSSNI 446 Query 412 TGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVERE 471 TGLLLTRDGGT E FRP GGDMRDNWRSELYKYKVV+I+PLG+APT+AKRRVVERE Sbjct 447 TGLLLTRDGGTNNSSNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVERE 506 Query 472 KR 473 KR Sbjct 507 KR 508 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_MN] Sequence ID: P05877.1 Length: 856 Range 1: 33 to 513 Score:716 bits(1848), Expect:0.0, Method:Compositional matrix adjust., Identities:351/485(72%), Positives:396/485(81%), Gaps:17/485(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWAT ACVPTDPNPQE+ L NVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATQACVPTDPNPQEVELVNVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNM-------- 113 NMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C++ N Sbjct 93 NMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNTTNTNNSTANNNSNSEG 152 Query 114 ---GGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQ 170 GGE+KNCSFN+TT +RDK +K +AL Y+LDIV + N+S++ YRLI+CNTS ITQ Sbjct 153 TIKGGEMKNCSFNITTSIRDKMQKEYALLYKLDIVSIDNDSTS----YRLISCNTSVITQ 208 Query 171 ACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNG 230 ACPK+SF+PIPIHYCAPAG+AILKCN+K F+G G C NVST+QCTHG +PVVSTQLLLNG Sbjct 209 ACPKISFEPIPIHYCAPAGFAILKCNDKKFSGKGSCKNVSTVQCTHGIRPVVSTQLLLNG 268 Query 231 SLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIG 290 SLAEEE++IRS+N TDN KTIIVHLNESV+INCTRPN N RK I IGPG+AFY T IIG Sbjct 269 SLAEEEVVIRSENFTDNAKTIIVHLNESVQINCTRPNYNKRKRIHIGPGRAFYTTKNIIG 328 Query 291 DIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYC 350 IRQAHCNISR WN TL+++ KL E F NK I F + SGGD EI HSFNC GEFFYC Sbjct 329 TIRQAHCNISRAKWNDTLRQIVSKLKEQFKNKTIVFNQSSGGDPEIVMHSFNCGGEFFYC 388 Query 351 NTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSN 410 NTS LFNST+ N+T N T N+ IT+ C+IKQIINMWQ VG+AMYAPPIEG + C SN Sbjct 389 NTSPLFNSTWNGNNTWNNTTGSNNNITLQCKIKQIINMWQEVGKAMYAPPIEGQIRCSSN 448 Query 411 ITGLLLTRDGG--TGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVV 468 ITGLLLTRDGG T +DTEIFRP GGDMRDNWRSELYKYKVV I+PLG+APTKAKRRVV Sbjct 449 ITGLLLTRDGGKDTDTNDTEIFRPGGGDMRDNWRSELYKYKVVTIEPLGVAPTKAKRRVV 508 Query 469 EREKR 473 +REKR Sbjct 509 QREKR 513 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ4.2 Length: 843 Range 1: 34 to 498 Score:714 bits(1842), Expect:0.0, Method:Compositional matrix adjust., Identities:345/477(72%), Positives:392/477(82%), Gaps:16/477(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 +LWVTVYYGVPVWKE TTLFCASDAKAYD EVHNVWAT+ACVPTDPNPQE+VL NVTEN Sbjct 34 DLWVTVYYGVPVWKEPTTTLFCASDAKAYDPEVHNVWATYACVPTDPNPQELVLGNVTEN 93 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTI---DYNNRT-DNMGGE 116 FNMWEN+MV+QMH DIISLWDQSLKPCVK TPLCVTL+C++ I D N + GE Sbjct 94 FNMWENNMVDQMHLDIISLWDQSLKPCVKSTPLCVTLNCTDVNITMSDINGTSLKEDQGE 153 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSFN+TTE++DK+ K ALFYRLD+ P+KN SSN Y+LI+CN S +TQACPKVS Sbjct 154 IKNCSFNVTTELKDKKRKQQALFYRLDVEPIKN-SSNI---YKLISCNMSTVTQACPKVS 209 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 FDPIPIHYCAPAGYAILKCN+K FNGTGPC VST+QCTHG +PVVSTQLLLNGSLA+E+ Sbjct 210 FDPIPIHYCAPAGYAILKCNDKRFNGTGPCEKVSTVQCTHGIRPVVSTQLLLNGSLAQED 269 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAH 296 IIIRSKN+TDN K IIV N SV I+C RPNNNTRK IRIGPGQ F+ATGEIIGDIR+A+ Sbjct 270 IIIRSKNITDNTKNIIVQFNRSVIIDCRRPNNNTRKGIRIGPGQTFFATGEIIGDIRKAY 329 Query 297 CNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLF 356 CNI+RT WN+TL+ V + +HF N ++ F SGGD+EITTHSFNCRGEFFY NTS LF Sbjct 330 CNINRTLWNETLKNVSGEFKKHF-NFSVAFNSSSGGDVEITTHSFNCRGEFFYYNTSGLF 388 Query 357 NSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLL 416 N T N+T N IT+PCRI+Q +NMWQ +GRAMYAPPIEG + C SNITGLLL Sbjct 389 NETEVANNT-------NENITLPCRIRQFVNMWQRIGRAMYAPPIEGEIQCTSNITGLLL 441 Query 417 TRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 TRDG + EI RP GGDMRDNWRSELYKYKVV I+P+G+APTKAKRRVV+R KR Sbjct 442 TRDGSKDIDGKEILRPIGGDMRDNWRSELYKYKVVRIEPVGVAPTKAKRRVVQRAKR 498 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:J_SE9173] Sequence ID: Q9WC69.1 Length: 850 Range 1: 29 to 505 Score:712 bits(1838), Expect:0.0, Method:Compositional matrix adjust., Identities:341/482(71%), Positives:403/482(83%), Gaps:14/482(2%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVW++AKTTLFCASDAKAY E HNVWATHACVPTDPNPQEM L NVTEN Sbjct 29 NLWVTVYYGVPVWRDAKTTLFCASDAKAYSTEKHNVWATHACVPTDPNPQEMSLPNVTEN 88 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGE---- 116 FNMW+NDMV+QM +DIIS+WD+SLKPCVK+TPLCVTL+CS+ + + +++ Sbjct 89 FNMWKNDMVDQMQEDIISVWDESLKPCVKITPLCVTLNCSDVNSNNSTDSNSSASNNSPE 148 Query 117 -IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 +KNCSFN+TTE+R+KR++ +ALFYR D+VP+ +++ + Y LINCNTS I QACPKV Sbjct 149 IMKNCSFNVTTEIRNKRKQEYALFYRQDVVPINSDNKS----YILINCNTSVIKQACPKV 204 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF PIPIHYCAPAG+AILKCNNKTFNGTGPC NVST+QCTHG KPVVSTQLLLNGS+AE Sbjct 205 SFQPIPIHYCAPAGFAILKCNNKTFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSVAEG 264 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQA 295 +IIIRS+N++DN K IIV LN++VEI CTRPNNNTRK I +GPGQ YATGEIIGDIR+A Sbjct 265 DIIIRSENISDNAKNIIVQLNDTVEIVCTRPNNNTRKGIHMGPGQVLYATGEIIGDIRKA 324 Query 296 HCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 +CNISR WN TL+ V KKL EHF NK I F SGGD+EITTHSFNC GEFFYCNTS+L Sbjct 325 YCNISRKDWNNTLRRVAKKLREHF-NKTIDFTSPSGGDIEITTHSFNCGGEFFYCNTSTL 383 Query 356 FNSTYTPNSTENITGT-ENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGL 414 FNS++ N+ ++ T +N+ ITIPC+IKQI+ MWQ G+A+YAPPI G +TC+SNITGL Sbjct 384 FNSSWDENNIKDTNSTNDNTTITIPCKIKQIVRMWQRTGQAIYAPPIAGNITCKSNITGL 443 Query 415 LLTRDGGT---GMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVERE 471 LLTRDGG + TE FRP GG+M+DNWRSELYKYKVVE++PLG+APTKAKRRVVERE Sbjct 444 LLTRDGGNRNGSENGTETFRPTGGNMKDNWRSELYKYKVVELEPLGVAPTKAKRRVVERE 503 Query 472 KR 473 KR Sbjct 504 KR 505 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (MFA ISOLATE)] Sequence ID: P19551.1 Length: 853 Range 1: 33 to 509 Score:712 bits(1838), Expect:0.0, Method:Compositional matrix adjust., Identities:348/484(72%), Positives:396/484(81%), Gaps:18/484(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNV ATHACVPTDPNPQE++L NVTEN Sbjct 33 NLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVCATHACVPTDPNPQEVILVNVTEN 92 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDN-----MGG 115 F+MW+NDMVEQMH+DIISLWDQSLKPCVKLTPLCV L C++ D N + N G Sbjct 93 FDMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVNLKCTDLKNDTNTNSSNGRMIMEKG 152 Query 116 EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 EIKNCSFN++T +R+K +K +A FY+LDI P+ N + YRLI+CNTS ITQACPKV Sbjct 153 EIKNCSFNISTSIRNKVQKEYAFFYKLDIRPIDNTT------YRLISCNTSVITQACPKV 206 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF+PIPIHYCAPAG+AILKCN+KTFNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEE Sbjct 207 SFEPIPIHYCAPAGFAILKCNDKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEE 266 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRI--GPGQAFYATGEIIGDIR 293 E +IRS N TDN KTIIV LN SVEINCTRPNNNTRKSIRI GPG+AF G+ IG++R Sbjct 267 EGVIRSANFTDNAKTIIVQLNTSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGK-IGNMR 325 Query 294 QAHCNISRTAWNKTLQEVGKKLAEHFP-NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNT 352 QAHCNISR W TL+++ KL E F NK + F + SGGD EI THSFNC GEFFYCN+ Sbjct 326 QAHCNISRAKWMSTLKQIASKLREQFGNNKTVIFKQSSGGDPEIVTHSFNCGGEFFYCNS 385 Query 353 SSLFNSTY--TPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRS 409 + LFNST+ + STE TE S IT+PCRIKQ INMWQ VG+AMYAPPI G + C S Sbjct 386 TQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSS 445 Query 410 NITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVE 469 NITGLLLTRDGG +++E+FRP GGDMRDNWRSELYKYKVV+I+ LG+APTKAKRRVV+ Sbjct 446 NITGLLLTRDGGKNTNESEVFRPGGGDMRDNWRSELYKYKVVKIETLGVAPTKAKRRVVQ 505 Query 470 REKR 473 REKR Sbjct 506 REKR 509 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20888.1 Length: 855 Range 1: 32 to 509 Score:711 bits(1836), Expect:0.0, Method:Compositional matrix adjust., Identities:342/486(70%), Positives:395/486(81%), Gaps:21/486(4%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDA+AY EVHNVWATHACVPTDPNPQE+VL NVTEN Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDARAYATEVHNVWATHACVPTDPNPQEVVLGNVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS----------NRTIDYNNRT 110 F+MW+N+MVEQM +DIISLWDQSLKPCVKLTPLCVTL C+ N T ++ Sbjct 92 FDMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLDCTDVNTTSSSLRNATNTTSSSW 151 Query 111 DNM-GGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPL-KNESSNTSGDYRLINCNTSAI 168 + M GE+KNCSFN TT +RDK ++ +ALFY+LD++P+ KN++ +RLI+CNTS I Sbjct 152 ETMEKGELKNCSFNTTTSIRDKMQEQYALFYKLDVLPIDKNDTK-----FRLIHCNTSTI 206 Query 169 TQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLL 228 TQACPK+SF+PIP+HYC PAG+AILKCN+K FNGTGPC NVST+QCTHG KPVVSTQLLL Sbjct 207 TQACPKISFEPIPMHYCTPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIKPVVSTQLLL 266 Query 229 NGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEI 288 NGSLAEEE+IIRS N T+N K IIV LN+SVEINCTRPNNNTR I IGPG+AF+ T +I Sbjct 267 NGSLAEEEVIIRSSNFTNNAKIIIVQLNKSVEINCTRPNNNTRNRISIGPGRAFHTTKQI 326 Query 289 IGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFF 348 IGDIRQAHCN+SR W KTL+++ KL + F NK I F + SGGD EI HSFNC GEFF Sbjct 327 IGDIRQAHCNLSRATWEKTLEQIATKLRKQFRNKTIAFDRSSGGDPEIVMHSFNCGGEFF 386 Query 349 YCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCR 408 YCNTS LFNST+ N T TE + IT+PCRIKQI+NMWQ VG+AMYAPPI G + C Sbjct 387 YCNTSQLFNSTW--NDTTRANSTEVT-ITLPCRIKQIVNMWQEVGKAMYAPPISGQIRCS 443 Query 409 SNITGLLLTRDGGTG-MHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRV 467 S ITGLLLTRDGG + EIFRP GGDMRDNWRSELYKYKVV+I+PLG+APTKA+RRV Sbjct 444 SKITGLLLTRDGGKNTTNGIEIFRPAGGDMRDNWRSELYKYKVVKIEPLGVAPTKARRRV 503 Query 468 VEREKR 473 V+REKR Sbjct 504 VQREKR 509 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ0.2 Length: 850 Range 1: 33 to 505 Score:709 bits(1829), Expect:0.0, Method:Compositional matrix adjust., Identities:342/479(71%), Positives:398/479(83%), Gaps:13/479(2%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAY+ EVHNVWAT+ACVPTDP+PQE+VL NV+E F Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYEREVHNVWATYACVPTDPSPQELVLGNVSEKF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDY---NNRT----DNMG 114 NMW+N+MV+QMH+DIISLWD+SLKPCVKLTPLCVTL+C+ I+ NN T + Sbjct 93 NMWKNNMVDQMHEDIISLWDESLKPCVKLTPLCVTLNCTKAIINVTSSNNTTLAPNVTIS 152 Query 115 GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPK 174 E+KNCSFN+TTE+RDK++K +ALFY+LD+V + N SNTS YRLINCNTS +TQACPK Sbjct 153 EEMKNCSFNITTEIRDKQKKEYALFYKLDVVQINN--SNTS--YRLINCNTSTLTQACPK 208 Query 175 VSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAE 234 VSFDPIPIHYCAPAG+AILKCNNKTFNGTG C NVST+QCTHG KPVVSTQLLLNGSLAE Sbjct 209 VSFDPIPIHYCAPAGFAILKCNNKTFNGTGLCRNVSTVQCTHGIKPVVSTQLLLNGSLAE 268 Query 235 EEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQ 294 E++IIRS+N++DN KTIIV V+INCTRPNNNTR+SI IGPG+AFYATGEIIGD R+ Sbjct 269 EKMIIRSENISDNTKTIIVQFKNPVKINCTRPNNNTRRSIHIGPGRAFYATGEIIGDTRK 328 Query 295 AHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSS 354 AHCNIS W TL ++ + + + NK + F +GGDLEITTHSFNCRGEFFYCNT+ Sbjct 329 AHCNISEKQWYDTLIKIATEFKDQY-NKTVGFQPSAGGDLEITTHSFNCRGEFFYCNTTI 387 Query 355 LFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGL 414 LFN T + N EN IT+PCRIKQI+NMWQ VG+AMYAPPI G + C SNITGL Sbjct 388 LFNHTRVNDILSNNHTRENDTITLPCRIKQIVNMWQRVGQAMYAPPIAGKIQCNSNITGL 447 Query 415 LLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 LLT DGG G +++E RP GGDMRDNWRSELYKYKVV+I+PLG+APTKAKR+VV+REKR Sbjct 448 LLTIDGGEG-NESETLRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRQVVQREKR 505 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04581.1 Length: 853 Range 1: 32 to 508 Score:699 bits(1803), Expect:0.0, Method:Compositional matrix adjust., Identities:344/483(71%), Positives:391/483(80%), Gaps:16/483(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAK+Y+ E HN+WATHACVPTDPNPQE+ LENVTEN Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDAKSYETEAHNIWATHACVPTDPNPQEIALENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS-----NRTIDYNNRTDNMGG 115 FNMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+CS N T+ N T+ G Sbjct 92 FNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCSDELRNNGTMGNNVTTEEKG- 150 Query 116 EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 +KNCSFN+TT ++DK+++V+ALFYRLDIVP+ N+SS S +YRLINCNTSAITQACPKV Sbjct 151 -MKNCSFNVTTVLKDKKQQVYALFYRLDIVPIDNDSSTNSTNYRLINCNTSAITQACPKV 209 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF+PIPIHYCAPAG+AILKC +K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSLAEE Sbjct 210 SFEPIPIHYCAPAGFAILKCRDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEE 269 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYAT--GEIIGDIR 293 E+IIRS+NLT+N K II HLNESV+I C RP NTR+ IG GQ+ Y T IIG Sbjct 270 EVIIRSENLTNNAKNIIAHLNESVKITCARPYQNTRQRTPIGLGQSLYTTRSRSIIG--- 326 Query 294 QAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTS 353 QAHCNISR W+KTLQ+V +KL IKF SGGD EITTHSFNC GEFFYCNTS Sbjct 327 QAHCNISRAQWSKTLQQVARKLGTLLNKTIIKFKPSSGGDPEITTHSFNCGGEFFYCNTS 386 Query 354 SLFNSTYTPNSTENITGTENSI---ITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSN 410 LFNST+ ++ NIT + NS IT+ CRIKQII M G +A+YAPPIE + C SN Sbjct 387 GLFNSTWNISAWNNITESNNSTNTNITLQCRIKQIIKMVAG-RKAIYAPPIERNILCSSN 445 Query 411 ITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVER 470 ITGLLLTRDGG E FRP GGDMRDNWRSELYKYKVV+I+PLG+APT+AKRRVVER Sbjct 446 ITGLLLTRDGGINNSTNETFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTRAKRRVVER 505 Query 471 EKR 473 EKR Sbjct 506 EKR 508 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:H_VI991] Sequence ID: Q9Q714.1 Length: 859 Range 1: 29 to 504 Score:698 bits(1802), Expect:0.0, Method:Compositional matrix adjust., Identities:350/482(73%), Positives:386/482(80%), Gaps:25/482(5%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEAKTTLFCASDAKAYD E HNVWATHACVPTDPNPQEMVLENVTE Sbjct 29 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDTERHNVWATHACVPTDPNPQEMVLENVTET 88 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN----RTIDYNNRTDNMGGE 116 FNMW NDMVEQMH DIISLWDQSLKPCVKLTPLCVTL CS+ NN TD GE Sbjct 89 FNMWVNDMVEQMHTDIISLWDQSLKPCVKLTPLCVTLDCSSVNATNVTKSNNSTDINIGE 148 Query 117 I---KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGD-YRLINCNTSAITQAC 172 I +NCSFN+TT +RDK +KVHALFYR DIV + N S + YRLINCNTS I QAC Sbjct 149 IQEQRNCSFNVTTAIRDKNQKVHALFYRADIVQIDEGERNKSDNHYRLINCNTSVIKQAC 208 Query 173 PKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSL 232 PKVSF+PIPIHYCAPAG+AILKCN K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSL Sbjct 209 PKVSFEPIPIHYCAPAGFAILKCNGKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSL 268 Query 233 AE-EEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGD 291 AE EE+IIRSKN+TDN K IIV LNE V+INCTR NNTRKSIRIGPGQAFYATG+IIGD Sbjct 269 AEVEEVIIRSKNITDNTKNIIVQLNEPVQINCTRTGNNTRKSIRIGPGQAFYATGDIIGD 328 Query 292 IRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCN 351 IR+A+CNIS WN+TL +V KL +F NK I +GGD+EI THSFNC GEFFYCN Sbjct 329 IRRAYCNISGKQWNETLHKVITKLGSYFDNKTIILQPPAGGDIEIITHSFNCGGEFFYCN 388 Query 352 TSSLFNSTYT----------PNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPI 401 T+ LFNST+T NSTE+ITG IT+ C+IKQI+NMWQ VG+AMYAPPI Sbjct 389 TTKLFNSTWTNSSYTNDTYNSNSTEDITGN----ITLQCKIKQIVNMWQRVGQAMYAPPI 444 Query 402 EGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPT 461 G +TC SNITGL+LT D + T FRP GGDMRDNWRSELYKYKVV+I+PLG+APT Sbjct 445 RGNITCISNITGLILTFDRNNTNNVT--FRPGGGDMRDNWRSELYKYKVVKIEPLGVAPT 502 Query 462 KA 463 +A Sbjct 503 EA 504 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ8.2 Length: 851 Range 1: 32 to 506 Score:695 bits(1794), Expect:0.0, Method:Compositional matrix adjust., Identities:349/488(72%), Positives:396/488(81%), Gaps:28/488(5%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVWKEA TTLFCASDAKAY+ EVHNVWATHACVPTDPNPQE+VLENVTEN Sbjct 32 NLWVTVYYGVPVWKEATTTLFCASDAKAYETEVHNVWATHACVPTDPNPQEVVLENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTD------NMG 114 FNMW+N+MVEQMH DIISLWD+SLKPCVKLTPLCVTL C+N T NNRT+ N+ Sbjct 92 FNMWKNNMVEQMHTDIISLWDESLKPCVKLTPLCVTLTCTNVT---NNRTNANKNDTNIN 148 Query 115 G------EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTS-GDYRLINCNTSA 167 EIKNCSFN+TTE++DK+++V ALFY+LDIV +K N S + RLINCNTS Sbjct 149 ATVTSTDEIKNCSFNITTELKDKKKRVSALFYKLDIVQIKQSEINQSESEDRLINCNTST 208 Query 168 ITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLL 227 +TQACPKVSF+PIPIHYCAPAG+AILKCNN T NGTGPC NVST+QCTHG KPVVSTQLL Sbjct 209 VTQACPKVSFEPIPIHYCAPAGFAILKCNNNTCNGTGPCTNVSTVQCTHGIKPVVSTQLL 268 Query 228 LNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGE 287 LNGSLAEEEIIIRS+++T N K IIV LNE+VEINCTRP+NNTRKSI IGPG+AFYATG+ Sbjct 269 LNGSLAEEEIIIRSEDITKNTKNIIVQLNEAVEINCTRPSNNTRKSIHIGPGRAFYATGD 328 Query 288 IIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEF 347 IIGDIRQAHCNIS WNKT+ +V K+L +HF NK I F SGGD ++T H FNCRGEF Sbjct 329 IIGDIRQAHCNISGGQWNKTVNQVKKELGKHF-NKTIIFQPSSGGDPQVTRHIFNCRGEF 387 Query 348 FYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTC 407 YC+T+ + T T TIPCRIKQIINMWQ VG+A+YAPP G +TC Sbjct 388 SYCDTTDTVDDTEEEEDTTI---------TIPCRIKQIINMWQKVGQAIYAPPTAGNITC 438 Query 408 RSNITGLLLTRDGG--TGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 RSNITG++LTRDGG E FRP GGDMRDNWRSELYKYKVV+I+PLGIAPT+A+R Sbjct 439 RSNITGMILTRDGGNDNNTRTEETFRPGGGDMRDNWRSELYKYKVVQIEPLGIAPTRARR 498 Query 466 RVVEREKR 473 RVV+REKR Sbjct 499 RVVQREKR 506 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04583.1 Length: 859 Range 1: 32 to 513 Score:689 bits(1779), Expect:0.0, Method:Compositional matrix adjust., Identities:343/487(70%), Positives:389/487(79%), Gaps:19/487(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 +LWVTVYYGVPVWKEA TTLFCASDAK+Y+ EVHN+WATHACVPTDPNPQE+ LENVTE Sbjct 32 DLWVTVYYGVPVWKEATTTLFCASDAKSYETEVHNIWATHACVPTDPNPQEIELENVTEG 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN-------RTIDYNNRTDNM 113 FNMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C+N T +NRT+ Sbjct 92 FNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNVNGTAVNGTNAGSNRTNAE 151 Query 114 G----GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAIT 169 GE+KNCSFN+T DKR++ +A FY LD+V + ++S N+S YRLINCNTS IT Sbjct 152 LKMEIGEVKNCSFNITPVGSDKRQE-YATFYNLDLVQI-DDSDNSS--YRLINCNTSVIT 207 Query 170 QACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLN 229 QACPKV+FDPIPIHYCAPAG+AILKCN+K FNGT C NVST+QCTHG KPVVSTQLLLN Sbjct 208 QACPKVTFDPIPIHYCAPAGFAILKCNDKKFNGTEICKNVSTVQCTHGIKPVVSTQLLLN 267 Query 230 GSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEII 289 GSLAEEEI+IRS+NLTDN K IIV LNE+V INCTRP NNTR+ I GPGQA Y TG I+ Sbjct 268 GSLAEEEIMIRSENLTDNTKNIIVQLNETVTINCTRPGNNTRRGIHFGPGQALYTTG-IV 326 Query 290 GDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFY 349 GDIR+A+C I+ T W+KTLQ+V KL I F SGGD EITTHSFNCRGEFFY Sbjct 327 GDIRRAYCTINETEWDKTLQQVAVKLGSLLNKTKIIFNSSSGGDPEITTHSFNCRGEFFY 386 Query 350 CNTSSLFNSTYTPNSTENITGTENS-IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCR 408 CNTS LFNST+ N TE++ IT+PCRIKQIINMWQ G+AMYAPPI G++ C Sbjct 387 CNTSKLFNSTWQNNGARLSNSTESTGSITLPCRIKQIINMWQKTGKAMYAPPIAGVINCL 446 Query 409 SNITGLLLTRDGGTGM--HDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRR 466 SNITGL+LTRDGG D E RP GGDMRDNW SELYKYKVV I+PLG+APTKAKRR Sbjct 447 SNITGLILTRDGGNSSDNSDNETLRPGGGDMRDNWISELYKYKVVRIEPLGVAPTKAKRR 506 Query 467 VVEREKR 473 VVEREKR Sbjct 507 VVEREKR 513 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:J_SE9280] Sequence ID: Q9WC60.1 Length: 848 Range 1: 29 to 503 Score:688 bits(1775), Expect:0.0, Method:Compositional matrix adjust., Identities:335/480(70%), Positives:389/480(81%), Gaps:12/480(2%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 +LWVTVYYGVPVWK+AKTTLFCASDAKAY E HNVWATHACVPTDP+PQEM L NVTEN Sbjct 29 DLWVTVYYGVPVWKDAKTTLFCASDAKAYSTEKHNVWATHACVPTDPSPQEMNLPNVTEN 88 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGE---I 117 FNMW+NDMV+QM +DIIS+WD+SLKPCVK+TPLCVTL+CSN T + N +++ + Sbjct 89 FNMWKNDMVDQMQEDIISVWDESLKPCVKITPLCVTLNCSNITSNSNTTSNSSVSSPDIM 148 Query 118 KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSF 177 NCSFN+TTE+R+KR++ +ALFYR D+VP+ + + N Y LINCNTS I QACPKVSF Sbjct 149 TNCSFNITTEIRNKRKQEYALFYRQDVVPIDSNNKN----YILINCNTSVIKQACPKVSF 204 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 PIPIHYCAPAG+AILKCN+K FNGTG C NVST+QCTHG KPVVSTQLLLNGS+AE +I Sbjct 205 QPIPIHYCAPAGFAILKCNDKNFNGTGSCKNVSTVQCTHGIKPVVSTQLLLNGSIAEGDI 264 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHC 297 IIRS+N++DN K IIV LN++VEI C RPNNNTRK I +GPGQ YATGEIIG+IR+ HC Sbjct 265 IIRSENISDNAKNIIVQLNKTVEIVCYRPNNNTRKGIHMGPGQVLYATGEIIGNIRETHC 324 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFN 357 NIS W+ TL+ V KL EHF NK I F SGGD+EI THSFNC GEF YCNTS LFN Sbjct 325 NISERDWSNTLRRVATKLREHF-NKTINFTSPSGGDIEIVTHSFNCGGEFLYCNTSKLFN 383 Query 358 STYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLT 417 S++ NS E T + ITIPC+IKQI+ MWQ G+A+YAPPI G +TC SNITGLLLT Sbjct 384 SSWDKNSIEATNDTSXATITIPCKIKQIVRMWQRTGQAIYAPPIAGNITCTSNITGLLLT 443 Query 418 RDGGT----GMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 RDGG + TE FRP GG+M+DNWRSELYKYKVVEI+PLG+APTKAKRRVVEREKR Sbjct 444 RDGGNRGNGSENGTETFRPTGGNMKDNWRSELYKYKVVEIEPLGVAPTKAKRRVVEREKR 503 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:G_92NG083] Sequence ID: O41803.1 Length: 849 Range 1: 32 to 485 Score:664 bits(1712), Expect:0.0, Method:Compositional matrix adjust., Identities:320/466(69%), Positives:374/466(80%), Gaps:17/466(3%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NLWVTVYYGVPVW++A T LFCASDAK+Y +E HNVWATHACVPTDPNPQE+ +ENVTEN Sbjct 32 NLWVTVYYGVPVWEDADTPLFCASDAKSYSSEKHNVWATHACVPTDPNPQEIAIENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN----RTIDYNNRTDNMGGE 116 FNMW+N+MVEQM +DIISLW++SLKPCVKLTPLC+TL+C+N + NN +N E Sbjct 92 FNMWKNNMVEQMQEDIISLWEESLKPCVKLTPLCITLNCTNVNSANHTEANNTVENKE-E 150 Query 117 IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVS 176 IKNCSF +TTE K+++ +ALFY+LD+VP+ N + + YRLI+CN S I QACPKV+ Sbjct 151 IKNCSFKITTERGGKKKEEYALFYKLDVVPISNGNKTS---YRLIHCNVSTIKQACPKVN 207 Query 177 FDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEE 236 FDPIPIHYCAPAG+AILKC +K +NGTGPC NVST+QCTHG KPVVSTQLLLNGSLAEE+ Sbjct 208 FDPIPIHYCAPAGFAILKCRDKEYNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEED 267 Query 237 IIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAH 296 I IRS+N TDN K IIV LN S+EINC RPNNNTRKSI IGPGQAFYATG+IIGDIRQAH Sbjct 268 IRIRSENFTDNTKVIIVQLNNSIEINCIRPNNNTRKSIPIGPGQAFYATGDIIGDIRQAH 327 Query 297 CNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLF 356 CN+SR W + L+ V +L + + NK I F +GGDLEITTHSFNCRGEFFYCNTS LF Sbjct 328 CNVSRIKWREMLKNVTAQLRKIYNNKNITFNSSAGGDLEITTHSFNCRGEFFYCNTSGLF 387 Query 357 NSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLL 416 N+ + + E IT+PC+IKQI+ MWQ VG+AMYA PI G L C+SNITGL+L Sbjct 388 NNNISNINNET--------ITLPCKIKQIVRMWQKVGQAMYALPIAGNLVCKSNITGLIL 439 Query 417 TRDGGTGMHDT-EIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPT 461 TRDGG T E FRP GGDMRDNWRSELYKYK V+IK LG+APT Sbjct 440 TRDGGNNNDSTEETFRPGGGDMRDNWRSELYKYKTVKIKSLGVAPT 485 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18799.1 Length: 846 Range 1: 32 to 491 Score:660 bits(1704), Expect:0.0, Method:Compositional matrix adjust., Identities:323/472(68%), Positives:371/472(78%), Gaps:21/472(4%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 +LWVTVYYGVP+WKEA TTLFCASDAKAY E HN+WATHACVPTDPNPQE+ LENVTEN Sbjct 32 DLWVTVYYGVPIWKEATTTLFCASDAKAYKKEAHNIWATHACVPTDPNPQEIELENVTEN 91 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEI--- 117 FNMW+N+MVEQMH+DIISLWDQSLKPCVKLTPLCVTL+C++ R G++ Sbjct 92 FNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDEL-----RNSKGNGKVEEE 146 Query 118 ---KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPK 174 KNCSFN VRDKRE+V+ALFY+LDIVP+ N + S +YRLINC+TS ITQACPK Sbjct 147 EKRKNCSFN----VRDKREQVYALFYKLDIVPIDNNNRTNSTNYRLINCDTSTITQACPK 202 Query 175 VSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAE 234 +SF+PIPIH+CAPAG+AILKC +K FNGTGPC+NVST+QCTHG +PVVSTQLLLNGSLAE Sbjct 203 ISFEPIPIHFCAPAGFAILKCRDKKFNGTGPCSNVSTVQCTHGIRPVVSTQLLLNGSLAE 262 Query 235 EEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYA-TG--EIIGD 291 EEIIIRS+NLT+NVKTIIV LN S+ INCTRP TR+ IG Q+ Y TG + G Sbjct 263 EEIIIRSENLTNNVKTIIVQLNASIVINCTRPYKYTRQRTSIGLRQSLYTITGKKKKTGY 322 Query 292 IRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCN 351 I QAHC ISR WNK LQ+V KL I F SGGD EIT+H NC G+FFYCN Sbjct 323 IGQAHCKISRAEWNKALQQVATKLGNLLNKTTITFKPSSGGDPEITSHMLNCGGDFFYCN 382 Query 352 TSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNI 411 TS LFNST+ N T N TG N +T+PCRIKQI+N+WQ VG+AMYAPPIEG++ C SNI Sbjct 383 TSRLFNSTW--NQT-NSTGFNNGTVTLPCRIKQIVNLWQRVGKAMYAPPIEGLIKCSSNI 439 Query 412 TGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKA 463 TGLLLTRDGG E RP GGDMRDNWRSELYKYKVV+I+P+G+APTKA Sbjct 440 TGLLLTRDGGANNSSHETIRPGGGDMRDNWRSELYKYKVVKIEPIGVAPTKA 491 >RecName: Full=Truncated surface protein; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Flags: Precursor [Human immunodeficiency virus type 1 (ZAIRE 3 ISOLATE)] Sequence ID: P12491.1 Length: 460 Range 1: 34 to 455 Score:606 bits(1562), Expect:0.0, Method:Compositional matrix adjust., Identities:297/429(69%), Positives:344/429(80%), Gaps:15/429(3%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 WVTVYYGVPVWK+A+TTLFCASDAKAY+ E HNVWATHACVP+DP+PQE+VL NVTENFN Sbjct 34 WVTVYYGVPVWKDAETTLFCASDAKAYEKESHNVWATHACVPSDPSPQELVLGNVTENFN 93 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGE--IKNC 120 MW+N MVEQMH+DIISLWDQSLKPCVKLT LCVTL+C ID N T+N E I NC Sbjct 94 MWKNKMVEQMHEDIISLWDQSLKPCVKLTFLCVTLNC----IDVKNSTNNNTEEATITNC 149 Query 121 SFNMTTEVRDKREKVHALFYRLDIVPLK-NESSNTSGDYRLINCNTSAITQACPKVSFDP 179 SF + TE++DK E VH LFY+LD+VPL +S+ S YRLINCNTS ITQACPKVSF+P Sbjct 150 SFKVPTELKDKTETVHTLFYKLDVVPLNVTNNSSISSTYRLINCNTSTITQACPKVSFEP 209 Query 180 IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIII 239 IPIHYCAPAG+AILKCN+K FNGTGPC NVST+QCTHG +PVVSTQLLLNGSL+EEE+II Sbjct 210 IPIHYCAPAGFAILKCNDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLSEEEVII 269 Query 240 RSKNLTDNVKTIIVHLNESVEINCTRPNNN--TRKSIRIGPGQAFYATGEIIGDIRQAHC 297 RS+N+T+N KTIIV LNE+V+INCTRP ++ R+SIRIGPG+ FYA G I G QAHC Sbjct 270 RSENITNNAKTIIVQLNETVKINCTRPGSDKKIRQSIRIGPGKVFYAKGGITG---QAHC 326 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFN 357 NI+ W TLQ+V L F NK+I F SGGD+EITTH+FNC GEFFYCNTS LF Sbjct 327 NITDGEWRNTLQQVAIALRRQFNNKSIIFNSSSGGDIEITTHTFNCGGEFFYCNTSELFT 386 Query 358 STYTPNSTENITGTENSI---ITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGL 414 + +N T TE++ IT+PCRIKQ++ WQGVG+AMYAPPIEG + C SNITGL Sbjct 387 GIWNGTWDKNCTSTESNCTGNITLPCRIKQVVRTWQGVGQAMYAPPIEGTIRCSSNITGL 446 Query 415 LLTRDGGTG 423 LLTRDGG G Sbjct 447 LLTRDGGNG 455 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [SIVcpz GAB1] Sequence ID: P17281.1 Length: 854 Range 1: 33 to 495 Score:590 bits(1520), Expect:0.0, Method:Compositional matrix adjust., Identities:287/478(60%), Positives:354/478(74%), Gaps:22/478(4%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVW +A LFCASDAKA+ E HN+WAT ACVPTDP+PQE+ L NV E+F Sbjct 33 LWVTVYYGVPVWHDADPVLFCASDAKAHSTEAHNIWATQACVPTDPSPQEVFLPNVIESF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS----NRTIDYNNRTDNMGGEI 117 NMW+N+MV+QMH+DIISLWDQSLKPCVKLTPLCVTL CS ++ + N+T + E+ Sbjct 93 NMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLQCSKANFSQAKNLTNQTSSPPLEM 152 Query 118 KNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSF 177 KNCSFN+TTE+RDK+++V++LFY D+V L NE++ YR+INCNT+AITQACPK SF Sbjct 153 KNCSFNVTTELRDKKKQVYSLFYVEDVVNLGNENNT----YRIINCNTTAITQACPKTSF 208 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 +PIPIHYCAPAG+AILKCN+K F+G G C NVST+ CTHG KPVV+TQLL+NGSLAE I Sbjct 209 EPIPIHYCAPAGFAILKCNDKDFSGKGKCTNVSTVHCTHGIKPVVTTQLLINGSLAEGNI 268 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHC 297 +R +N + N IV L E+V +NC RP NNTR ++IGPG FY ++GD R A+C Sbjct 269 TVRVENKSKNTDVWIVQLVEAVSLNCHRPGNNTRGEVQIGPGMTFYNIENVVGDTRSAYC 328 Query 298 NISRTAWNKTLQEVGKKLAEHFPNKA--IKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 I+ T WN+T++EV K LA A I + SGGD E+T H FNC GEFFYCNTS + Sbjct 329 KINGTTWNRTVEEVKKALATSSNRTAANITLNRASGGDPEVTHHMFNCGGEFFYCNTSQI 388 Query 356 FNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLL 415 F T+NIT N II +PCRI+QI++ W VGR +YAPPI G +TC SNITGLL Sbjct 389 F--------TDNIT---NGIIILPCRIRQIVSSWMRVGRGIYAPPIRGNITCNSNITGLL 437 Query 416 LTRDGGTGMHDTEI-FRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREK 472 LT D + + FRP GG+M+D WRSELYKYKVV I+PL +APTKA+R V R+K Sbjct 438 LTSDTPVTNNSGNLTFRPTGGNMKDIWRSELYKYKVVRIEPLSVAPTKARRHTVARQK 495 >RecName: Full=Truncated surface protein; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Flags: Precursor [Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)] Sequence ID: P12490.1 Length: 421 Range 1: 33 to 417 Score:581 bits(1497), Expect:0.0, Method:Compositional matrix adjust., Identities:285/389(73%), Positives:321/389(82%), Gaps:7/389(1%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVWKEA TTLFCASDAKAYD EVHNVWATHACVPTDPNPQE+VL+NVTENF Sbjct 33 LWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLQNVTENF 92 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRT-IDYNNRTDNMGGEIKNC 120 NMW+N+ VEQMH+DIISLWDQSLKPCVK TPLCVTL+C++ T Y N + GEI+NC Sbjct 93 NMWKNNTVEQMHEDIISLWDQSLKPCVKSTPLCVTLNCTDLTNATYANGSSEERGEIRNC 152 Query 121 SFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPI 180 SFN+TT +R+K +K +ALFYRLDIVP+ + NTS Y LINCNTS ITQACPKVSF+PI Sbjct 153 SFNVTTIIRNKIQKEYALFYRLDIVPI--DKDNTS--YTLINCNTSVITQACPKVSFEPI 208 Query 181 PIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIR 240 PIHYCAPAG+AILKCN+K FNGTGPC NVST+QCTHG KPVVSTQLLLNGSLAE E++IR Sbjct 209 PIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEGEVVIR 268 Query 241 SKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS 300 S+N T+N KTIIV LN+SVEINCTRPNNNT+K I IGPG+ YA +IIGDIRQAHCNIS Sbjct 269 SENFTNNAKTIIVQLNKSVEINCTRPNNNTKKGIAIGPGRTLYAREKIIGDIRQAHCNIS 328 Query 301 RTAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTY 360 + WN TL+++ KL E F NK I F + SGGD EI HSFNC GEFFYC T+ LFNST+ Sbjct 329 KAKWNDTLKQIVTKLKEQFRNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCKTTQLFNSTW 388 Query 361 TPNSTENIT--GTENSIITIPCRIKQIIN 387 NST N T N I IPCRIKQIIN Sbjct 389 LFNSTWNDTERSDNNETIIIPCRIKQIIN 417 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [SIVcpz MB66] Sequence ID: Q1A261.1 Length: 880 Range 1: 36 to 527 Score:573 bits(1477), Expect:0.0, Method:Compositional matrix adjust., Identities:280/499(56%), Positives:356/499(71%), Gaps:33/499(6%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 N+WVTVYYGVPVW+EA TTLFCASDAKA + EVHNVWA+ ACV T+PNP+E+ L NVTE Sbjct 36 NMWVTVYYGVPVWREADTTLFCASDAKAQNPEVHNVWASQACVSTNPNPEEIELTNVTEY 95 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS------------NRTIDYNN 108 FN WEN+MVEQMH+DI++LWDQS+KPCVKL PLCVTL+CS N T+ + Sbjct 96 FNAWENNMVEQMHEDIVNLWDQSVKPCVKLIPLCVTLNCSLFKCIKENGNTTNCTVQIST 155 Query 109 RTDNMGGEIK-------NCSFNMTTEVRDKREKVHALFYRLDIVPL---KNESSNTSGDY 158 D+ I NCSFN TTE+RD++++V++LFYR D+ PL K + + Y Sbjct 156 GNDSTANNITVGTIDMYNCSFNATTELRDRKKQVYSLFYRQDLEPLEGNKPPEGDKNALY 215 Query 159 RLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGT 218 RL NCNT+A+TQAC KVS +PIPIHYCAPAG+A+LKCN+K F G G C NVST+ CTHG Sbjct 216 RLYNCNTTAMTQACSKVSLEPIPIHYCAPAGFALLKCNDKNFTGIGQCKNVSTVHCTHGI 275 Query 219 KPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGP 278 +PVVSTQ LLNG+L EE++ + +N+++++ TIIV LNE+V +NCTR NNT K I IGP Sbjct 276 RPVVSTQFLLNGTL-EEKVTVLDRNVSNDMDTIIVKLNETVRLNCTRTGNNTIKGIPIGP 334 Query 279 GQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAE----HFPNKAIKFAKHSGGDL 334 Q FY +IGD RQA C +++T W T ++V L E + N+ I F +GGDL Sbjct 335 SQIFYGIETVIGDTRQAFCQLNKTVWTNTFKKVRHALNETYKGYLGNETITFGPSTGGDL 394 Query 335 EITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGR 394 E+T C GEFFYCNTS LFN++ N T++ +N ITIPCRI+QI+ +WQ VGR Sbjct 395 EVTNLHLICGGEFFYCNTSILFNTSIIFNETKD----DN--ITIPCRIRQIVRLWQRVGR 448 Query 395 AMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIK 454 ++ PPI G + C SNITG+L + M+ + +F P GG+MR+NWRSELYKYKVV I+ Sbjct 449 GIFLPPIRGTINCISNITGILFAQQKTDRMNKSAMFTPVGGEMRNNWRSELYKYKVVRIE 508 Query 455 PLGIAPTKAKRRVVEREKR 473 PLG+APTKAKRR V REKR Sbjct 509 PLGVAPTKAKRRTVHREKR 527 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 N_YBF30] Sequence ID: O91086.1 Length: 842 Range 1: 26 to 488 Score:568 bits(1464), Expect:0.0, Method:Compositional matrix adjust., Identities:277/482(57%), Positives:353/482(73%), Gaps:30/482(6%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 WVTVYYGVPVW+EA+TTLFCASDAKA+ E HN+WAT ACVPTDPNPQE++L NVTE FN Sbjct 26 WVTVYYGVPVWREAETTLFCASDAKAHSTEAHNIWATQACVPTDPNPQEVLLPNVTEKFN 85 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTD------NMG-G 115 MWEN M +QM +DIISLW+QSLKPCVKLTPLCVT+ C++ + N T+ ++G Sbjct 86 MWENKMADQMQEDIISLWEQSLKPCVKLTPLCVTMLCNDSYGEERNNTNMTTREPDIGYK 145 Query 116 EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKV 175 ++KNCSFN TTE+ DK+++V++LFY D+VP+ N + T YRLINCNT+A+TQACPK Sbjct 146 QMKNCSFNATTELTDKKKQVYSLFYVEDVVPI-NAYNKT---YRLINCNTTAVTQACPKT 201 Query 176 SFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEE 235 SF+PIPIHYCAP G+AI+KCN F+G G C NVST+QCTHG KPV+STQL+LNGSL + Sbjct 202 SFEPIPIHYCAPPGFAIMKCNEGNFSGNGSCTNVSTVQCTHGIKPVISTQLILNGSLNTD 261 Query 236 EIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQA 295 I+IR+ D+ ++V NE+V INCTRP NNT ++IGP FY +I+GDIRQA Sbjct 262 GIVIRN----DSHSNLLVQWNETVPINCTRPGNNTGGQVQIGPAMTFYNIEKIVGDIRQA 317 Query 296 HCNISRT----AWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCN 351 +CN+S+ WN+T +E+ K L ++ N + + + GDLE+T FNCRGEFFYCN Sbjct 318 YCNVSKELWEPMWNRTREEIKKILGKN--NITFRARERNEGDLEVTHLMFNCRGEFFYCN 375 Query 352 TSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNI 411 TS LFN E + IT+PCRI+QI+N+W VG+ +YAPPI G+L C SNI Sbjct 376 TSKLFN--------EELLNETGEPITLPCRIRQIVNLWTRVGKGIYAPPIRGVLNCTSNI 427 Query 412 TGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVERE 471 TGL+L GG +T ++ P GG+M + WR ELYKYKVV I+P+G+AP KAKRR V RE Sbjct 428 TGLVLEYSGGPDTKETIVY-PSGGNMVNLWRQELYKYKVVSIEPIGVAPGKAKRRTVSRE 486 Query 472 KR 473 KR Sbjct 487 KR 488 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [SIVcpz EK505] Sequence ID: Q1A243.1 Length: 835 Range 1: 27 to 481 Score:566 bits(1458), Expect:0.0, Method:Compositional matrix adjust., Identities:279/478(58%), Positives:358/478(74%), Gaps:29/478(6%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 LWVTVYYGVPVW++A+T LFCASDAKA+ E HN+WAT ACVPTDPNPQE+++ NVTE F Sbjct 27 LWVTVYYGVPVWRDAETVLFCASDAKAHSTEAHNIWATQACVPTDPNPQEVLIPNVTERF 86 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN-RTIDYN-NRTDNMGGEIKN 119 +MW+N+MV+QM +DIISLW+QSLKPCVKLTPLCVTL CS+ R+++ + N+T+++ +++N Sbjct 87 DMWKNNMVDQMQEDIISLWEQSLKPCVKLTPLCVTLSCSSWRSVNNSVNQTNHV--QMQN 144 Query 120 CSFNMTTEVRDKREKVHALFYRLDIVPLK-NESSNTSGDYRLINCNTSAITQACPKVSFD 178 CSFN+TTE+RDK+++V++LFY DI+PL N SS + YRLINCNT+A+TQACPK+SF+ Sbjct 145 CSFNVTTELRDKKKQVYSLFYMGDIIPLDTNNSSGNNSQYRLINCNTTAVTQACPKISFE 204 Query 179 PIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEII 238 PIPI+YCAP G+AI+KCN++ FNGTG CNNVST+QCTHG KPV+STQL+LNGSLA I+ Sbjct 205 PIPIYYCAPPGFAIIKCNDQDFNGTGECNNVSTVQCTHGIKPVISTQLILNGSLATSNIV 264 Query 239 IRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCN 298 IR+ ++ T++V LNES+ INCTRP N TR ++IGPG FY IIGD RQA+C Sbjct 265 IRN----NSKDTLLVQLNESIPINCTRPGNKTRGQVQIGPGMTFYNIENIIGDTRQAYCE 320 Query 299 ISRT---AWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSL 355 ++RT WN T Q + K I F + GGDLE+T NC GEFFYCNTS L Sbjct 321 VNRTWEQIWNTTKQIIINN------RKNITFIPNPGGDLEVTNLMINCGGEFFYCNTSQL 374 Query 356 FNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLL 415 F N N TG IT+ CRI+QI+N+W VG+ +YAPPI+G + C SNITG++ Sbjct 375 FT-----NQNGNTTGN----ITLQCRIRQIVNLWTRVGKGIYAPPIKGPINCLSNITGII 425 Query 416 LTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKR 473 L +G I+ P GGDM + WR ELYKYKVV I+P+G+AP KAKR V R+KR Sbjct 426 LDYT-KSGTEKYTIY-PTGGDMTNLWRQELYKYKVVSIEPIGVAPGKAKRHTVTRQKR 481 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 N_YBF106] Sequence ID: Q9IDV2.1 Length: 836 Range 1: 24 to 481 Score:563 bits(1451), Expect:0.0, Method:Compositional matrix adjust., Identities:274/486(56%), Positives:347/486(71%), Gaps:43/486(8%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 WVTVYYGVPVW++A+T LFCASDAKA+ E HN+WAT ACVPTDPNPQE++L NVTE FN Sbjct 24 WVTVYYGVPVWRDAETVLFCASDAKAHSTEAHNIWATQACVPTDPNPQEVLLTNVTEYFN 83 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC------------SNRTIDYNNRT 110 MWEN M EQM +DIISLW+QSLKPCVKLTPLCVT+ C +NRT D +R Sbjct 84 MWENKMAEQMQEDIISLWEQSLKPCVKLTPLCVTMLCNNSNGNSAGNSTTNRTEDLEDR- 142 Query 111 DNMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQ 170 ++KNCSFN+TTE+RD++++V++LFY D+VP+K+ + N + YRLINCNT+A+TQ Sbjct 143 -----QMKNCSFNITTEIRDRKKQVYSLFYVEDVVPIKDGTDNNT--YRLINCNTTAVTQ 195 Query 171 ACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNG 230 ACPK +F+PIPIHYCAP G+AI+KCN F+G G C NVST+QCTHG KPV+STQL+LNG Sbjct 196 ACPKTTFEPIPIHYCAPPGFAIMKCNEGNFSGNGSCTNVSTVQCTHGIKPVISTQLILNG 255 Query 231 SLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIG 290 SL ++I+IR ++V NE+V INCTRP NNT ++IGP FY +I+G Sbjct 256 SLDTDDIVIRHHG-----GNLLVQWNETVSINCTRPGNNTGGQVQIGPAMTFYNIEKIVG 310 Query 291 DIRQAHCNISR---TAWNKTLQEVGKKLAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEF 347 D+RQA+CN+S + WNKT +++ + L N K +GGDLE+T FNC GEF Sbjct 311 DVRQAYCNVSEEWGSMWNKTKKKIKRLLGN---NTTFKAQDKNGGDLEVTHLMFNCXGEF 367 Query 348 FYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTC 407 FYCNTS LF N +EN T N I +PCRIKQI+++W V + +YAPPI G L+C Sbjct 368 FYCNTSRLF------NESENKT---NKTIILPCRIKQIVBLWTRVXKGIYAPPIRGNLSC 418 Query 408 RSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRV 467 S+ITGL+L G G + P GG+M + WR ELYKYKVV I+P+G+AP KAKRR Sbjct 419 XSSITGLILEHSGENG---NKTVYPSGGNMVNLWRQELYKYKVVSIEPIGVAPGKAKRRT 475 Query 468 VEREKR 473 V REKR Sbjct 476 VSREKR 481 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 O_ANT70] Sequence ID: Q77377.1 Length: 863 Range 1: 34 to 513 Score:473 bits(1217), Expect:3e-158, Method:Compositional matrix adjust., Identities:243/493(49%), Positives:328/493(66%), Gaps:34/493(6%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 L+ TVY GVPVW++A LFCASDA E HN+WA+ ACVPTDP P E L NVT++F Sbjct 34 LYATVYAGVPVWEDATPVLFCASDANLTSTEKHNIWASQACVPTDPTPYEYPLHNVTDDF 93 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEIKNCS 121 N+W+N MVEQM +DIISLWDQSLKPCV++T LCV + C+N N +N+ +K C Sbjct 94 NIWKNYMVEQMQEDIISLWDQSLKPCVQMTFLCVQMECTNIAGTTN---ENL---MKKCE 147 Query 122 FNMTTEVRDKREKVHALFYRLDIVPLKNESSNT----SGDYRLINCNTSAITQACPKVSF 177 FN+TT ++DK+EK ALFY D++ L NE+S+T S Y L NCN++ ITQACPKVSF Sbjct 148 FNVTTVIKDKKEKKQALFYVSDLMEL-NETSSTNKTNSKMYTLTNCNSTTITQACPKVSF 206 Query 178 DPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEI 237 +PIPIHYCAPAGYAI KCN+ FNGTG C N++ + CTHG +P VSTQL+LNG+L++ +I Sbjct 207 EPIPIHYCAPAGYAIFKCNSTEFNGTGTCRNITVVTCTHGIRPTVSTQLILNGTLSKGKI 266 Query 238 IIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDI----- 292 + +K++ + K IIV LN ++ + C RP + ++ +RIGP A+Y+ G IG Sbjct 267 RMMAKDILEGGKNIIVTLNSTLNMTCERPQIDIQE-MRIGP-MAWYSMG--IGGTAGNSS 322 Query 293 RQAHCNISRTAWNKTLQEVGKKLAEHFPNKA---IKFAKHSGGDLEITTHSFNCRGEFFY 349 R A+C + T W K L++ ++ E N + F SGGDLE+T FNC GEFFY Sbjct 323 RAAYCKYNATDWGKILKQTAERYLELVNNTGSINMTFNHSSGGDLEVTHLHFNCHGEFFY 382 Query 350 CNTSSLFNSTYTPNST----ENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGIL 405 CNT+ +FN T++ N T N++ N T+PC+++Q++ W +YAPPI+G L Sbjct 383 CNTAKMFNYTFSCNGTTCSVSNVSQGNNG--TLPCKLRQVVRSWIRGQSGLYAPPIKGNL 440 Query 406 TCRSNITGLLLTRDGGTGMHDTEI-FRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAK 464 TC SNITG++L D + + FRP GGDM+D WR+EL+ YKVV +KP +APT+ Sbjct 441 TCMSNITGMILQMDNTWNSSNNNVTFRPIGGDMKDIWRTELFNYKVVRVKPFSVAPTRIA 500 Query 465 RRVVE----REKR 473 R V+ REKR Sbjct 501 RPVISTRTHREKR 513 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 O_MVP5180] Sequence ID: Q79670.1 Length: 876 Range 1: 35 to 523 Score:468 bits(1204), Expect:4e-156, Method:Compositional matrix adjust., Identities:235/489(48%), Positives:312/489(63%), Gaps:17/489(3%) Query 2 LWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENF 61 L+ TVY GVPVW+EA LFCASDA E HN+WA+ ACVPTDPNP E L NVT+NF Sbjct 35 LYATVYSGVPVWEEAAPVLFCASDANLTSTEQHNIWASQACVPTDPNPHEFPLGNVTDNF 94 Query 62 NMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRTDNMGGEIKNCS 121 ++W+N MV+QMH+DIISLW+QSLKPC K+T LCV ++C + + + E++NCS Sbjct 95 DIWKNYMVDQMHEDIISLWEQSLKPCEKMTFLCVQMNCVDLQTNKTGLLNETINEMRNCS 154 Query 122 FNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPIP 181 FN+TT + DK+E+ ALFY D+ + + ++ Y L NCN++ I QACPKVSF+PIP Sbjct 155 FNVTTVLTDKKEQKQALFYVSDLSKVNDSNAVNGTTYMLTNCNSTIIKQACPKVSFEPIP 214 Query 182 IHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRS 241 IHYCAP GYAI KCN+ FNGTG C+N+S + CTHG KP VSTQL+LNG+L+ E+I I Sbjct 215 IHYCAPTGYAIFKCNDTDFNGTGLCHNISVVTCTHGIKPTVSTQLILNGTLSREKIRIMG 274 Query 242 KNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDI----RQAHC 297 KN+T++ K IIV LN + + C R + I GP + T + + R A+C Sbjct 275 KNITESAKNIIVTLNTPINMTCIREGIAEVQDIYTGPMRWRSMTLKRSNNTSPRSRVAYC 334 Query 298 NISRTAWNKTLQEVGKK---LAEHFPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSS 354 ++T W LQ+ + L N I F++ SGGD E++ FNC GEFFYCNTS Sbjct 335 TYNKTVWENALQQTAIRYLNLVNQTENVTIIFSRTSGGDAEVSHLHFNCHGEFFYCNTSG 394 Query 355 LFNSTY---TPNSTENITGTE--NSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRS 409 +FN T+ T + + I G+ N TIPC+++Q++ W +YAPPI G LTC S Sbjct 395 MFNYTFINCTKSGCQEIKGSNETNKNGTIPCKLRQLVRSWMKGESRIYAPPIPGNLTCHS 454 Query 410 NITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVV- 468 NITG++L D RP GGDM+D WR++LY YKVV+IKP +APTK R ++ Sbjct 455 NITGMILQLDQPWNSTGENTLRPVGGDMKDIWRTKLYNYKVVQIKPFSVAPTKMSRPIIN 514 Query 469 ----EREKR 473 REKR Sbjct 515 IHTPHREKR 523 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [SIVcpz TAN1] Sequence ID: Q8AIH5.1 Length: 871 Range 1: 26 to 490 Score:418 bits(1074), Expect:6e-137, Method:Compositional matrix adjust., Identities:221/478(46%), Positives:297/478(62%), Gaps:30/478(6%) Query 5 TVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFNMW 64 TV+YGVPVWKEA+ TLFCASDA + HN+WATH CVP DPNP E+ L NV+ FNM Sbjct 26 TVFYGVPVWKEAQPTLFCASDADITSRDKHNIWATHNCVPLDPNPYEVTLANVSIRFNME 85 Query 65 ENDMVEQMHQDIISLWDQSLKPCVKLTPLCV------------TLHCSNRTIDYN-NRTD 111 EN MV++M +DI+SL+ QS KPCVKLTP C+ TL+ + T+ N + Sbjct 86 ENYMVQEMKEDILSLFQQSFKPCVKLTPFCIKMTCTMTNTTNKTLNSATTTLTPTVNLSS 145 Query 112 NMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINCNTSAITQA 171 E+ NCSFN TTE RDK++++++LFYR DIV K + +N S Y L NCNTS ITQ Sbjct 146 IPNYEVYNCSFNQTTEFRDKKKQIYSLFYREDIV--KEDGNNNS--YYLHNCNTSVITQE 201 Query 172 CPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGTKPVVSTQLLLNGS 231 C K +F+PIPI YCAPAG+A+LKC ++ F G G C+NVS + CTHG P+++T L LNGS Sbjct 202 CDKSTFEPIPIRYCAPAGFALLKCRDQNFTGKGQCSNVSVVHCTHGIYPMIATALHLNGS 261 Query 232 LAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAFYATGEIIGD 291 L EEE N + N ++V N S+ + C R NNTR ++IGPG FY ++GD Sbjct 262 LEEEETKAYFVNTSVNTP-LLVKFNVSINLTCERTGNNTRGQVQIGPGMTFYNIENVVGD 320 Query 292 IRQAHCNISRTAWNKTLQEVGKKL--AEHFPNKAIK--FAKHSGGDLEITTHSFNCRGEF 347 R+A+C+++ T W + L + N+ ++ F GD E+T+ FNC+GEF Sbjct 321 TRKAYCSVNATTWYRNLDWAMAAINTTMRARNETVQQTFQWQRDGDPEVTSFWFNCQGEF 380 Query 348 FYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGILTC 407 FYCN ++ N T+T N T N GT + PCR++QI+N W V + +Y PP G + C Sbjct 381 FYCNLTNWTN-TWTANRTNNTHGT----LVAPCRLRQIVNHWGIVSKGVYLPPRRGTVKC 435 Query 408 RSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 SNITGL++T + T F + D W+ EL +YKVVEI+PL +AP KR Sbjct 436 HSNITGLIMTAEKDNNNSYTPQF---SAVVEDYWKVELARYKVVEIQPLSVAPRPGKR 490 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05883.1 Length: 856 Range 1: 26 to 492 Score:279 bits(714), Expect:4e-84, Method:Compositional matrix adjust., Identities:182/491(37%), Positives:255/491(51%), Gaps:53/491(10%) Query 4 VTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFNM 63 VTV+YG+P W+ A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 26 VTVFYGIPAWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEITL-NVTEAFDA 77 Query 64 WENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNNRT------------- 110 W N + EQ +D+ +L++ S+KPCVKLTPLCV ++C+ + RT Sbjct 78 WNNTVTEQAVEDVWNLFETSIKPCVKLTPLCVAMNCTRNMTTWTGRTDTQNITIINDTSH 137 Query 111 ---DNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLINC 163 DN G E+ +C F+MT RDKR++ +Y D+V N +S+ S Y + +C Sbjct 138 ARADNCTGLKEEEMIDCQFSMTGLERDKRKQYTEAWYSKDVV-CDNNTSSQSKCY-MNHC 195 Query 164 NTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHGTKPVV 222 NTS IT++C K +D + YCAP G+A+L+CN+ ++G P C+ V CT + Sbjct 196 NTSVITESCDKHYWDAMRFRYCAPPGFALLRCNDTNYSGFAPNCSKVVAATCTRMMETQT 255 Query 223 STQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQAF 282 ST NG+ AE I DN I ++ ++ ++C RP N T I G F Sbjct 256 STWFGFNGTRAENRTYIYWHG-KDNRTIISLNNFYNLTMHCKRPGNKTVLPITFMSGFKF 314 Query 283 YATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA-------IKF-AKHSGGDL 334 ++ I RQA C W + +QEV + LA+H K IKF A G D Sbjct 315 HSQPVINKKPRQAWCWFE-GQWKEAMQEVKETLAKHPRYKGNRSRTENIKFKAPGRGSDP 373 Query 335 EITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGR 394 E+T NCRGE YCN T+ N EN TG + PCRI+QIIN W VG+ Sbjct 374 EVTYMWTNCRGESLYCNM------TWFLNWVENRTGQKQRNYA-PCRIRQIINTWHRVGK 426 Query 395 AMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIK 454 +Y PP EG LTC S +T ++ D G + T F E ++ +R EL YK+VEI Sbjct 427 NLYLPPREGELTCNSTVTSIIANIDAGDQTNIT--FSAEAAEL---YRLELGDYKLVEIT 481 Query 455 PLGIAPTKAKR 465 P+G APT KR Sbjct 482 PIGFAPTSVKR 492 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04577.1 Length: 858 Range 1: 22 to 501 Score:279 bits(713), Expect:6e-84, Method:Compositional matrix adjust., Identities:185/504(37%), Positives:252/504(50%), Gaps:65/504(12%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVP WK A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 22 YVTVFYGVPTWKNATIPLFCATRNR-------DTWGTIQCLPDNDDYQEITL-NVTEAFD 73 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNN-------------- 108 W N + EQ +D+ L++ S+KPCVKLTPLCV + CS+ N Sbjct 74 AWNNTVTEQAIEDVWHLFETSIKPCVKLTPLCVAMKCSSTESSTGNNTTSKSTSTTTTTP 133 Query 109 --------------RTDNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNE 150 R DN G E NC FNMT RDK+++ + +Y D+V N Sbjct 134 TDQEQEISEDTPCARADNCSGLGEEETINCQFNMTGLERDKKKQYNETWYSKDVVCETNN 193 Query 151 SSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNV 209 S+N + Y + +CNTS IT++C K +D I YCAP GYA+L+CN+ ++G P C+ V Sbjct 194 STNQTQCY-MNHCNTSVITESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFAPNCSKV 252 Query 210 STIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNN 269 CT + ST NG+ AE I DN I ++ ++ ++C RP N Sbjct 253 VASTCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLSLHCKRPGNK 311 Query 270 TRKSIRIGPGQAFYATGEIIGDI-RQAHCNISRTAWNKTLQEVGKKLAEHFPNKA----- 323 T K I + G F++ + I RQA C + W +QEV + LA+H + Sbjct 312 TVKQIMLMSGHVFHSHYQPINKRPRQAWCWF-KGKWKDAMQEVKETLAKHPRYRGTNDTR 370 Query 324 -IKFAK-HSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCR 381 I FA G D E+ NCRGEF YCN T+ N EN T + PC Sbjct 371 NISFAAPGKGSDPEVAYMWTNCRGEFLYCNM------TWFLNWIENKTHRNYA----PCH 420 Query 382 IKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNW 441 IKQIIN W VGR +Y PP EG L+C S +T ++ D F E ++ + Sbjct 421 IKQIINTWHKVGRNVYLPPREGELSCNSTVTSIIANIDWQNNNQTNITFSAEVAEL---Y 477 Query 442 RSELYKYKVVEIKPLGIAPTKAKR 465 R EL YK+VEI P+G APTK KR Sbjct 478 RLELGDYKLVEITPIGFAPTKEKR 501 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24105.1 Length: 859 Range 1: 26 to 502 Score:275 bits(704), Expect:1e-82, Method:Compositional matrix adjust., Identities:181/499(36%), Positives:254/499(50%), Gaps:58/499(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVP WK A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 26 YVTVFYGVPAWKNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIPL-NVTEAFD 77 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDYNN-------------- 108 W+N + EQ +D+ +L++ S+KPCVKLTPLCV + C+ T D Sbjct 78 AWDNTITEQAIEDVWNLFETSIKPCVKLTPLCVAMKCNISTSDTTMIRTTTPSTAKEAPI 137 Query 109 -------RTDNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGD 157 RT+N G +I C FNMT RDK+++ + +Y D+V N + T+ + Sbjct 138 SDNSPCIRTNNCSGLEEEKIVKCHFNMTGLERDKKKQYNETWYSSDVV-CDNSTDQTTNE 196 Query 158 Y--RLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQC 214 + +CNTS IT++C K +D + YCAP G+AIL+CN+ ++G P C+ V C Sbjct 197 TTCYMNHCNTSVITESCDKHYWDAMRFRYCAPPGFAILRCNDTKYSGFAPNCSKVVASTC 256 Query 215 THGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSI 274 T + ST NG+ AE I DN I ++ + ++ + C RP N T I Sbjct 257 TRMMETQTSTWFGFNGTRAENRTYIYWHG-KDNRTIISLNKHYNLSMYCRRPGNKTVVPI 315 Query 275 RIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIK-------FA 327 + GQ F++ I RQA C + W + +QEV + LAEH K K A Sbjct 316 TLMSGQRFHSRPIINKRPRQAWCWF-KGNWTEAMQEVKQTLAEHPRYKGTKNITDITFKA 374 Query 328 KHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYT-PNSTENITGTENSIITIPCRIKQII 386 G D E+T NCRGEFFYCN + N PN+T+ PC I+QII Sbjct 375 PERGSDPEVTYMWSNCRGEFFYCNMTWFLNWVENKPNTTKRNYA--------PCHIRQII 426 Query 387 NMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELY 446 N W VG+ +Y PP EG LTC S +T ++ D F D+ + +R EL Sbjct 427 NTWHKVGKNVYLPPREGELTCNSTVTSIIANIDERDNQTTNITF---SADVAELYRLELG 483 Query 447 KYKVVEIKPLGIAPTKAKR 465 YK+VEI P+G APT KR Sbjct 484 DYKLVEITPIGFAPTSQKR 502 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18040.2 Length: 738 Range 1: 24 to 492 Score:268 bits(686), Expect:5e-81, Method:Compositional matrix adjust., Identities:174/492(35%), Positives:251/492(51%), Gaps:52/492(10%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVPVW+ A LFCA+ + + W T C P + + QE+ L NVTE F+ Sbjct 24 YVTVFYGVPVWRNASIPLFCATKNR-------DTWGTIQCKPDNDDYQEITL-NVTEAFD 75 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC-------------------SNRT 103 W+N + EQ +D+ SL++ S+KPCVKLTPLCV + C + + Sbjct 76 AWDNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMSCNSTTNNTTTTGSTTGMSEINETS 135 Query 104 IDYNNRTDNMGGE-IKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLIN 162 Y++ +G E I NC F MT RDK+++ + +Y D+V N + + + + Sbjct 136 PSYSDNCTGLGKEEIVNCQFYMTGLERDKKKQYNETWYSKDVVCESNNTKDGKNRCYMNH 195 Query 163 CNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHGTKPV 221 CNTS IT++C K +D I YCAP GYA+L+CN+ ++G P C+ V CT + Sbjct 196 CNTSVITESCDKHYWDAIKFRYCAPPGYALLRCNDTNYSGFEPKCSKVVASTCTRMMETQ 255 Query 222 VSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQA 281 ST NG+ AE I DN I ++ ++ I+C RP N T I + G Sbjct 256 TSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLSIHCKRPGNKTVVPITLMSGLV 314 Query 282 FYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA------IKFAKHS-GGDL 334 F++ I RQA C + W + +QEV + L +H K I F K G D Sbjct 315 FHSQ-PINTRPRQAWCWF-KGKWREAMQEVKQTLIKHPRYKGTNDTKNINFTKPGRGSDP 372 Query 335 EITTHSFNCRGEFFYCNTSSLFNSTYT-PNSTENITGTENSIITIPCRIKQIINMWQGVG 393 E+ NCRGEF YCN + N PN T++ PC I+QIIN W VG Sbjct 373 EVAYMWTNCRGEFLYCNMTWFLNWVENRPNQTQHNYA--------PCHIRQIINTWHKVG 424 Query 394 RAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEI 453 + +Y PP EG LTC S +T ++ D + + F E ++ +R EL YK++E+ Sbjct 425 KNVYLPPREGQLTCNSTVTSIIANIDVNSNQTNI-TFSAEVAEL---YRLELGDYKLIEV 480 Query 454 KPLGIAPTKAKR 465 P+G APT+ KR Sbjct 481 TPIGFAPTREKR 492 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (isolate ST/24.1C#2)] Sequence ID: P32536.1 Length: 712 Range 1: 24 to 495 Score:266 bits(681), Expect:2e-80, Method:Compositional matrix adjust., Identities:179/495(36%), Positives:257/495(51%), Gaps:55/495(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVPVW+ A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 24 YVTVFYGVPVWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIAL-NVTEAFD 75 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRT-----------------ID 105 W N + EQ +D+ SL++ S+KPCVKLTPLCV + C++ T I Sbjct 76 AWNNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMRCNSTTAKNTTSTPTTTTTANTTIG 135 Query 106 YNN---RTDNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDY 158 N+ RTDN G E+ +C FNMT RDK++ + +Y D+V ++ Y Sbjct 136 ENSSCIRTDNCTGLGEEEMVDCQFNMTGLERDKKKLYNETWYSKDVVCESKDTKKEKTCY 195 Query 159 RLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHG 217 + +CNTS IT++C K +D + YCAP G+A+L+CN+ ++G P C+ V CT Sbjct 196 -MNHCNTSVITESCDKHYWDTMRFRYCAPPGFALLRCNDTNYSGFEPNCSKVVAATCTRM 254 Query 218 TKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIG 277 + ST NG+ AE I DN I ++ ++ I C RP N T I + Sbjct 255 METQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKFYNLTILCKRPGNKTVVPITLM 313 Query 278 PGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA------IKF-AKHS 330 G F++ I RQA C + W + ++EV LA+H K I+F A Sbjct 314 SGLVFHSQ-PINRRPRQAWCWF-KGEWKEAMKEVKLTLAKHPRYKGTNDTEKIRFIAPGE 371 Query 331 GGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQ 390 D E+ NCRGEF YCN + N + N T T+++ +PC IKQIIN W Sbjct 372 RSDPEVAYMWTNCRGEFLYCNMTWFLN--WVENRTNQ---TQHNY--VPCHIKQIINTWH 424 Query 391 GVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKV 450 VG+ +Y PP EG LTC S +T ++ DGG + F E ++ +R EL YK+ Sbjct 425 KVGKNVYLPPREGQLTCNSTVTSIIANIDGGENQTNI-TFSAEVAEL---YRLELGDYKL 480 Query 451 VEIKPLGIAPTKAKR 465 +E+ P+G APT KR Sbjct 481 IEVTPIGFAPTSIKR 495 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20872.2 Length: 859 Range 1: 24 to 495 Score:269 bits(687), Expect:4e-80, Method:Compositional matrix adjust., Identities:179/495(36%), Positives:259/495(52%), Gaps:55/495(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVPVW+ A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 24 YVTVFYGVPVWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIAL-NVTEAFD 75 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRT-----------------ID 105 W N + EQ +D+ SL++ S+KPCVKLTPLCV + C++ T I Sbjct 76 AWNNTVTEQAVEDVWSLFETSIKPCVKLTPLCVAMRCNSTTAKNTTSTPTTTTTANTTIG 135 Query 106 YNN---RTDNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDY 158 N+ RTDN G E+ +C FNMT RDK++ + +Y D+V N++ Y Sbjct 136 ENSSCIRTDNCTGLGEEEMVDCQFNMTGLERDKKKLYNETWYSKDVVCESNDTKKEKTCY 195 Query 159 RLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHG 217 + +CNTS IT++C K +D + YCAP G+A+L+CN+ ++G P C+ V CT Sbjct 196 -MNHCNTSVITESCDKHYWDTMRFRYCAPPGFALLRCNDTNYSGFEPNCSKVVAATCTRM 254 Query 218 TKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIG 277 + ST NG+ AE I DN I ++ ++ ++C RP N T I + Sbjct 255 METQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKFYNLTVHCKRPGNKTVVPITLM 313 Query 278 PGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA------IKF-AKHS 330 G F++ I RQA C + W + ++EV LA+H K I+F A Sbjct 314 SGLVFHSQ-PINRRPRQAWCWF-KGEWKEAMKEVKLTLAKHPRYKGTNDTEKIRFIAPGE 371 Query 331 GGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQ 390 D E+ NCRGEF YCN + N + N T T+++ +PC IKQIIN W Sbjct 372 RSDPEVAYMWTNCRGEFLYCNMTWFLN--WVENRTNQ---TQHNY--VPCHIKQIINTWH 424 Query 391 GVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKV 450 VG+ +Y PP EG LTC S +T ++ DGG + F E ++ +R EL YK+ Sbjct 425 KVGKNVYLPPREGQLTCNSTVTSIIANIDGGENQTNI-TFSAEVAEL---YRLELGDYKL 480 Query 451 VEIKPLGIAPTKAKR 465 +E+ P+G APT KR Sbjct 481 IEVTPIGFAPTPVKR 495 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12449.1 Length: 846 Range 1: 24 to 493 Score:266 bits(680), Expect:3e-79, Method:Compositional matrix adjust., Identities:174/492(35%), Positives:253/492(51%), Gaps:51/492(10%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVPVWK A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 24 YVTVFYGVPVWKNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIPL-NVTEAFD 75 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRT------------------- 103 W+N + EQ +D+ +L++ S+KPCVKLTPLCVT++C+ T Sbjct 76 AWDNIVTEQAVEDVWNLFETSIKPCVKLTPLCVTMNCNASTESAVATTSPSGPDMINDTD 135 Query 104 --IDYNNRTDNMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLI 161 I NN + ++ C FNMT DK+++ +Y D+V + S++ Y + Sbjct 136 PCIQLNNCSGLREEDMVECQFNMTGLELDKKKQYSETWYSKDVVCESDNSTDRKRCY-MN 194 Query 162 NCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHGTKP 220 +CNTS IT++C K +D + YCAP G+ +L+CN+ ++G P C+ V CT + Sbjct 195 HCNTSVITESCDKHYWDAMRFRYCAPPGFVLLRCNDTNYSGFEPNCSKVVASTCTRMMET 254 Query 221 VVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQ 280 ST L NG+ AE I DN I ++ ++ I C RP N T I + G+ Sbjct 255 QPSTWLGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLTILCRRPENKTVVPITLMSGR 313 Query 281 AFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA------IKF-AKHSGGD 333 F++ I RQA C + W + +QEV + L +H K I F A D Sbjct 314 RFHSQKIINKKPRQAWCRF-KGEWREAMQEVKQTLVKHPRYKGTNDTNKINFTAPEKDSD 372 Query 334 LEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVG 393 E+ NCRGEF YCN T+ N EN TG +++ +PC I+QIIN W VG Sbjct 373 PEVAYMWTNCRGEFLYCNM------TWFLNWVENKTGQQHNY--VPCHIEQIINTWHKVG 424 Query 394 RAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEI 453 + +Y PP EG L+C S +T ++ D F E ++ +R EL YK+VE+ Sbjct 425 KNVYLPPREGELSCESTVTSIIANIDVDGDNRTNITFSAEVAEL---YRLELGDYKLVEV 481 Query 454 KPLGIAPTKAKR 465 P+G APT KR Sbjct 482 TPIGFAPTAEKR 493 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02837.1 Length: 854 Range 1: 21 to 522 Score:261 bits(666), Expect:3e-77, Method:Compositional matrix adjust., Identities:174/519(34%), Positives:260/519(50%), Gaps:63/519(12%) Query 1 NLWVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTEN 60 NL+VTV+YG+PVWK + FC + N+WAT C+P D + E+ L N+TE Sbjct 21 NLYVTVFYGIPVWKNSTVQAFCMTPNT-------NMWATTNCIPDDHDNTEVPL-NITEA 72 Query 61 FNMWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDY-------------- 106 F W+N +V+Q +I L++Q+++PCVKL+P+C+ + C Sbjct 73 FEAWDNPLVKQAESNIHLLFEQTMRPCVKLSPICIKMSCVELNGTATTKATTTATTTMTT 132 Query 107 ---NNRTDNMGGEI-----KNCSFNMTTEVRDKREKVHALFYRLDIV-PLKNESSNTSGD 157 N T+ + GE+ NC+F + RD ++ +Y ++V K S S D Sbjct 133 PCQNCSTEQIEGEMAEEPASNCTFAIAGYQRDVKKNYSMTWYDQELVCNNKTGSEKGSKD 192 Query 158 YRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTH 216 +I+CN S I +AC K +D + + YCAPAGYA+LKCN+K + G P C NVS + CT Sbjct 193 CYMIHCNDSVIKEACDKTYWDTLRVRYCAPAGYALLKCNDKDYRGFAPKCKNVSVVHCTR 252 Query 217 GTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNE--SVEINCTRPNNNTRKSI 274 ++T + LNGS +E I K DN T+I+ LN+ ++ + C RP N T + Sbjct 253 LINTTITTGIGLNGSRSENRTEIWQKGGNDN-DTVIIKLNKFYNLTVRCRRPGNKTVLPV 311 Query 275 RIGPGQAFYATGEIIGDIRQAHCNIS---RTAWNKTLQEVGKKLAEHFPNKAIK--FAKH 329 I G F++ + ++QA C+ + AW + +EV K ++ +I+ + Sbjct 312 TIMAGLVFHSQ-KYNTRLKQAWCHFQGDWKGAWKEVREEVKK--VKNLTEVSIENIHLRR 368 Query 330 SGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSI-------------I 376 GD E FNC+GEFFYC N Y N TE+ GT + Sbjct 369 IWGDPESANFWFNCQGEFFYCKMDWFIN--YLNNRTEDAEGTNRTCDKGKPGPGPCVQRT 426 Query 377 TIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEI-FRPEGG 435 + C I+Q++N W V + +YAPP EG L C S++T L + D + P+ Sbjct 427 YVACHIRQVVNDWYTVSKKVYAPPREGHLECNSSVTALYVAIDYNNKSGPINVTLSPQ-- 484 Query 436 DMRDNWRSELYKYKVVEIKPLGIAPTKAKRRV-VEREKR 473 +R W EL YK+VEI P+G APT +R REKR Sbjct 485 -VRSIWAYELGDYKLVEITPIGFAPTDVRRYTGPTREKR 522 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17755.2 Length: 851 Range 1: 25 to 491 Score:256 bits(653), Expect:2e-75, Method:Compositional matrix adjust., Identities:169/492(34%), Positives:248/492(50%), Gaps:54/492(10%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YG+P W+ A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 25 YVTVFYGIPAWRNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEITL-NVTEAFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS-------------------NRT 103 W+N + EQ +D+ L++ S+KPCVKLTPLCV ++C+ N T Sbjct 77 AWDNTVTEQAIEDVWRLFETSIKPCVKLTPLCVAMNCNITSGTTATPSPPNITIIDENST 136 Query 104 IDYNNRTDNMGG-EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYRLIN 162 +N +G E+ C FNMT +DK+ K + +Y D+V + +N +G + + Sbjct 137 CIGDNNCTGLGKEEVVECEFNMTGLEQDKKRKYNDAWYSRDVV---CDKTNGTGTCYMRH 193 Query 163 CNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHGTKPV 221 CNTS I ++C K +D + YCAP G+A+L+CN+ ++G P C+ V CT + Sbjct 194 CNTSVIKESCDKHYWDAMKFRYCAPPGFALLRCNDTNYSGFEPKCSKVVAASCTRMMETQ 253 Query 222 VSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQA 281 ST NG+ AE I DN I ++ ++ ++C RP N T I + G+ Sbjct 254 TSTWFGFNGTRAENRTYIYWHG-KDNRTIISLNKYYNLTMHCKRPGNKTVVPITLMSGRR 312 Query 282 FYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA-------IKFAKHS-GGD 333 F++ QA C + W + ++EV + LA+H P I F K G D Sbjct 313 FHSRPVYNKKPGQAWCWF-QGNWIEAMREVKQTLAKH-PRYGGTNDTGKINFTKPGIGSD 370 Query 334 LEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVG 393 E+T NCRGEF YCN + N + N T G PC I+QIIN W VG Sbjct 371 PEVTYMWTNCRGEFLYCNMTWFLN--WVENKTNQTHGN-----YAPCHIRQIINTWHKVG 423 Query 394 RAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEI 453 +Y PP EG LTC S +T ++ D G F E ++ +R EL YK++E+ Sbjct 424 TNVYLPPREGELTCNSTVTSIIANIDSD-GNQTNITFSAEVAEL---YRLELGDYKLIEV 479 Query 454 KPLGIAPTKAKR 465 P+ APTK KR Sbjct 480 TPIPFAPTKEKR 491 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus - mac K6W] Sequence ID: P05884.1 Length: 881 Range 1: 25 to 516 Score:255 bits(652), Expect:4e-75, Method:Compositional matrix adjust., Identities:164/507(32%), Positives:242/507(47%), Gaps:59/507(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVP W+ A LFCA+ + + W T C+P + + E+ L NVTE+F+ Sbjct 25 YVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNGDYSELAL-NVTESFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTID----------------- 105 WEN + EQ +D+ L++ S+KPCVKL+PLC+T+ C+ D Sbjct 77 AWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSSTTITTAAPT 136 Query 106 -------------------YNNRTDNMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVP 146 NN T ++ +C F MT RDK ++ + +Y D+V Sbjct 137 SAPVSEKIDMVNETSSCIAQNNCTGLEQEQMISCKFTMTGLKRDKTKEYNETWYSTDLVC 196 Query 147 LKNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP- 205 + S++ + +CNTS I ++C K +D I YCAP GYA+L+CN+ ++G P Sbjct 197 EQGNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPK 256 Query 206 CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTR 265 C+ V CT + ST NG+ AE I DN I ++ ++ + C R Sbjct 257 CSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLTMKCRR 315 Query 266 PNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFP----- 320 P N T + I G F++ + +QA C W ++EV + + +H P Sbjct 316 PGNKTVLPVTIMSGLVFHSQ-PLTDRPKQAWCWFG-GKWKDAIKEVKQTIVKH-PRYTGT 372 Query 321 --NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITI 378 I GGD E+T NCRGEF YC + N + T + + Sbjct 373 NNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYV 432 Query 379 PCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMR 438 PC I+QIIN W VG+ +Y PP EG LTC S +T L+ D G + E ++ Sbjct 433 PCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTSITMSAEVAEL- 491 Query 439 DNWRSELYKYKVVEIKPLGIAPTKAKR 465 +R EL YK+VEI P+G+APT KR Sbjct 492 --YRLELGDYKLVEITPIGLAPTDVKR 516 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (MM251 ISOLATE)] Sequence ID: P08810.2 Length: 881 Range 1: 25 to 516 Score:255 bits(652), Expect:5e-75, Method:Compositional matrix adjust., Identities:166/508(33%), Positives:244/508(48%), Gaps:61/508(12%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVP W+ A LFCA+ + + W T C+P + + E+ L NVTE+F+ Sbjct 25 YVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNGDYSELAL-NVTESFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTID----------------- 105 WEN + EQ +D+ L++ S+KPCVKL+PLC+T+ C+ D Sbjct 77 AWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSSTTITTAAPT 136 Query 106 -------------------YNNRTDNMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVP 146 NN T ++ +C F MT RDK ++ + +Y D+V Sbjct 137 SAPVSEKIDMVNETSSCIAQNNCTGLEQEQMISCKFTMTGLKRDKTKEYNETWYSTDLVC 196 Query 147 LKNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP- 205 + S++ + +CNTS I ++C K +D I YCAP GYA+L+CN+ ++G P Sbjct 197 EQGNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPK 256 Query 206 CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTR 265 C+ V CT + ST NG+ AE I DN I ++ ++ + C R Sbjct 257 CSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLTMKCRR 315 Query 266 PNNNTRKSIRIGPGQAFYATGEIIGDI-RQAHCNISRTAWNKTLQEVGKKLAEHFP---- 320 P N T + I G F++ + I D +QA C W ++EV + + +H P Sbjct 316 PGNKTVLPVTIMSGLVFHS--QPINDRPKQAWCWFG-GKWKDAIKEVKQTIVKH-PRYTG 371 Query 321 ---NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIIT 377 I GGD E+T NCRGEF YC + N + T + Sbjct 372 TNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNY 431 Query 378 IPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDM 437 +PC I+QIIN W VG+ +Y PP EG LTC S +T L+ D G + E ++ Sbjct 432 VPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTSITMSAEVAEL 491 Query 438 RDNWRSELYKYKVVEIKPLGIAPTKAKR 465 +R EL YK+VEI P+G+APT KR Sbjct 492 ---YRLELGDYKLVEITPIGLAPTDVKR 516 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (K78 ISOLATE)] Sequence ID: P11267.2 Length: 881 Range 1: 25 to 516 Score:255 bits(651), Expect:7e-75, Method:Compositional matrix adjust., Identities:166/508(33%), Positives:244/508(48%), Gaps:61/508(12%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVP W+ A LFCA+ + + W T C+P + + E+ L NVTE+F+ Sbjct 25 YVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNGDYSELAL-NVTESFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTID----------------- 105 WEN + EQ +D+ L++ S+KPCVKL+PLC+T+ C+ D Sbjct 77 AWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSSTTITTAAPT 136 Query 106 -------------------YNNRTDNMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVP 146 NN T ++ +C FNMT RDK ++ + +Y D+V Sbjct 137 SAPVSEKLDMVNETSSCIAQNNCTGLEQEQMISCKFNMTGLKRDKTKEYNETWYSTDLVC 196 Query 147 LKNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP- 205 + S++ + +CNTS I ++C K +D I YCAP GYA+L+CN+ ++G P Sbjct 197 EQRNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPK 256 Query 206 CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTR 265 C+ V CT + ST NG+ AE I DN I ++ ++ + C R Sbjct 257 CSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLTMKCRR 315 Query 266 PNNNTRKSIRIGPGQAFYATGEIIGDI-RQAHCNISRTAWNKTLQEVGKKLAEHFP---- 320 P N T + I F++ + I D +QA C W ++EV + + +H P Sbjct 316 PGNKTVLPVTIMSELVFHS--QPINDRPKQAWCWFG-GKWKDAIKEVKQTIVKH-PRYTG 371 Query 321 ---NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIIT 377 I GGD E+T NCRGEF YC + N + T + Sbjct 372 TNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDKDVTTQRPKERHRKNY 431 Query 378 IPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDM 437 +PC I+QIIN W VG+ +Y PP EG LTC S +T L+ D G + E ++ Sbjct 432 VPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTSITMSAEVAEL 491 Query 438 RDNWRSELYKYKVVEIKPLGIAPTKAKR 465 +R EL YK+VEI P+G+APT KR Sbjct 492 ---YRLELGDYKLVEITPIGLAPTDVKR 516 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05885.1 Length: 882 Range 1: 25 to 517 Score:253 bits(646), Expect:3e-74, Method:Compositional matrix adjust., Identities:166/508(33%), Positives:245/508(48%), Gaps:60/508(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVP W+ A LFCA+ + + W T C+P + + E+ L NVTE+F+ Sbjct 25 YVTVFYGVPAWRNATIPLFCATKNR-------DTWGTTQCLPDNDDYSELAL-NVTESFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN--------------------- 101 WEN + EQ +D+ L++ S+KPCVKL+PLC+T+ C+ Sbjct 77 AWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDKWGLTKSSTTTASTTTT 136 Query 102 ------RTIDYNNRT------DNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIV 145 T D N T DN G + +C FNMT RDK+++ + +Y D+V Sbjct 137 TTAKSVETRDIVNETSPCVVHDNCTGLEQEPMISCKFNMTGLKRDKKKEYNETWYSADLV 196 Query 146 PLKNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP 205 + S+ + +CNTS I + C K +D I YCAP GYA+L+CN+ ++G P Sbjct 197 CEQGNSTGNESRCYMNHCNTSVIQECCDKDYWDAIRCRYCAPPGYALLRCNDTNYSGFMP 256 Query 206 -CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCT 264 C+ V CT + ST NG+ AE I DN I ++ + ++ + C Sbjct 257 NCSKVVVSSCTRMMETQTSTWFRFNGTRAENRTYIYWHG-RDNRTIISLNKHYNLTMKCR 315 Query 265 RPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFP---- 320 RP N T + I F++ + +QA C W + ++EV + + +H P Sbjct 316 RPGNKTVLPVTIMSALVFHSQ-PVNERPKQAWCRFGGN-WKEAIKEVKQTIVKH-PRYTG 372 Query 321 ---NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIIT 377 I GGD E+T NCRGEF YC + N + T + Sbjct 373 TNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRSLTTQKPKERHKRNY 432 Query 378 IPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDM 437 +PC I+QIIN W VG+ +Y PP EG LTC S +T L+ + G + E ++ Sbjct 433 VPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANINWTDGNQTSITMSAEVAEL 492 Query 438 RDNWRSELYKYKVVEIKPLGIAPTKAKR 465 +R EL YK+VEI P+G+APT KR Sbjct 493 ---YRLELGDYKLVEITPIGLAPTNVKR 517 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19503.1 Length: 889 Range 1: 26 to 524 Score:253 bits(645), Expect:5e-74, Method:Compositional matrix adjust., Identities:169/516(33%), Positives:242/516(46%), Gaps:71/516(13%) Query 4 VTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFNM 63 VTV+YG+P W+ A LFCA+ + + W T C+P + + E+ + NVTE F+ Sbjct 26 VTVFYGIPAWRNATVPLFCATKNR-------DTWGTTQCLPDNGDYSELAI-NVTEAFDA 77 Query 64 WENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC------------------------ 99 W+N + EQ +D+ +L++ S+KPCVKLTPLC+T+ C Sbjct 78 WDNTVTEQAIEDVWNLFETSIKPCVKLTPLCITMRCNKSETDRWGLTGTPAPTTTQTTTT 137 Query 100 -----------------SNRTIDYNNRTDNMGGEIKNCSFNMTTEVRDKREKVHALFYRL 142 S+ I NN T + +C FNMT RDK+ + + +Y Sbjct 138 QASTTPTSPITAKVVNDSDPCIKINNCTGLEQEPMVSCKFNMTGLKRDKKREYNETWYSR 197 Query 143 DIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNG 202 D+V +N + S Y + +CNTS I ++C K +D I YCAP GYA+L+CN+ ++G Sbjct 198 DLVCEQNSNETDSKCY-MNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSG 256 Query 203 TGP-CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNE--SV 259 P C V CT + ST NG+ AE I ++ I+ LN+ ++ Sbjct 257 FAPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRT---IISLNKYYNL 313 Query 260 EINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEH- 318 + C RP N T + I G F++ I +QA C W K +QEV + L +H Sbjct 314 TMRCRRPGNKTVLPVTIMSGLVFHSQ-PINERPKQAWCWFG-GEWKKAIQEVKETLVKHP 371 Query 319 -----FPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTEN 373 + IK GGD E+T NCRGEF YC + N + T Sbjct 372 RYTGTNKTEQIKLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVENIQNGSRWTSQNQ 431 Query 374 SIIT----IPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEI 429 +PC I+QIIN W VG+ +Y PP EG LTC S +T L+ D G Sbjct 432 KERQRRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIAEIDWINGNETNIT 491 Query 430 FRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 E ++ +R EL YK+VEI P+ APT KR Sbjct 492 MSAEVAEL---YRLELGDYKLVEITPIAFAPTSVKR 524 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74126.1 Length: 857 Range 1: 24 to 503 Score:250 bits(638), Expect:3e-73, Method:Compositional matrix adjust., Identities:170/504(34%), Positives:250/504(49%), Gaps:57/504(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YG+P WK A LFCA+ + + W T C+P + + QE+ L NVTE F+ Sbjct 24 YVTVFYGIPAWKNASIPLFCATRNR-------DTWGTIQCLPDNDDYQEIPL-NVTEAFD 75 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS--------------------NR 102 W N + EQ +D+ +L++ S+KPCVKLTPLCV + C+ N Sbjct 76 AWNNTVTEQAVEDVWNLFETSVKPCVKLTPLCVQMECNSTSTESSNSTSEGSTVPEILNE 135 Query 103 TID--YNNRTDNMGG-EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTSGDYR 159 T NN ++G E+ +C FNMT DK ++ +Y D+V + ++ TS Sbjct 136 TTSCITNNSCSDLGSEEVVDCRFNMTGLQLDKPQQYSETWYSKDVVC--DTTNGTSRKCY 193 Query 160 LINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHGT 218 + +CNTS IT++C K +D + YCAP G +L+CN+ ++G P C V CT Sbjct 194 MNHCNTSVITESCDKHYWDAMRFRYCAPPGLCLLRCNDTNYSGFEPKCPKVVAATCTRMM 253 Query 219 KPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGP 278 + ST NG+ AE I DN I ++ + ++ ++C RP N + I + Sbjct 254 ETQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNTHYNLTMHCKRPGNKSVLPITLRS 312 Query 279 GQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEH------FPNKAIKFAK-HSG 331 G+ F++ I +QA C W K +QEV + L +H + I F + G Sbjct 313 GRVFHSRPIINERPKQAWCWFG-GDWKKAMQEVKQTLVKHPRYRGTNDTQKINFTQPGKG 371 Query 332 GDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQG 391 D E+ NCRGEF YCN + N EN + + PC I+QIIN W Sbjct 372 SDAEVVYMWTNCRGEFLYCNMTRFL------NWIENRAHPQRNY--APCHIRQIINTWHR 423 Query 392 VGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVV 451 VG+ +Y PP EG L C S +T ++ D M D + ++ + +R EL YK+V Sbjct 424 VGQNIYLPPREGELVCNSTVTSIIANID----MFDNQTSITFSAEVAELYRLELGDYKLV 479 Query 452 EIKPLGIAPTKAKR--RVVEREKR 473 EI P+G APT KR +R KR Sbjct 480 EITPIGFAPTSEKRYSSAPQRNKR 503 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05886.1 Length: 865 Range 1: 23 to 536 Score:249 bits(636), Expect:6e-73, Method:Compositional matrix adjust., Identities:168/531(32%), Positives:261/531(49%), Gaps:77/531(14%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 W+TV+YG+PVWK + FC + + +WAT C+P D + E+ L N+TE F Sbjct 23 WITVFYGIPVWKNSSVQAFCMTPTTS-------LWATTNCIPDDHDYTEVPL-NITEPFE 74 Query 63 MW--ENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC------SNRTIDYNNRTDNMG 114 W N ++ Q +I L++Q++KPCVKL+PLC+ ++C R + G Sbjct 75 AWGDRNPLIAQAASNIHLLFEQTMKPCVKLSPLCIKMNCVELNSTRERATTPTTTPKSTG 134 Query 115 --------GE------------------IKNCSFNMTTEVRDKREKVHALFYRLDIVPLK 148 GE NC+F M VRD+++ +++ + + K Sbjct 135 LPCVGPTSGENLQSCNASIIEREMEDEPASNCTFAMAGYVRDQKKNYYSVVWNDAEIYCK 194 Query 149 NESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CN 207 N++++TS + +I+CN S I +AC K +D + + YCAPAGYA+LKCN++ +NG C+ Sbjct 195 NKTNSTSKECYMIHCNDSVIKEACDKTYWDQLRLRYCAPAGYALLKCNDEDYNGYKQNCS 254 Query 208 NVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNE--SVEINCTR 265 NVS + CT V+T LLLNGS E I K+ +N T+++ N+ ++ + C R Sbjct 255 NVSVVHCTGLMNTTVTTGLLLNGSYHENRTQIWQKHRVNN-NTVLILFNKHYNLSVTCRR 313 Query 266 PNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKAIK 325 P N T + I G F++ + +RQA C+ W +EV +K+ E P K Sbjct 314 PGNKTVLPVTIMAGLVFHSQKYNM-KLRQAWCHFEGN-WRGAWREVKQKIVE-LPKDRYK 370 Query 326 --------FAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENI-----TGTE 372 + + GD E + FNC+GEFFYC N Y N T + + + Sbjct 371 GTNNTEHIYLQRQWGDPEASNLWFNCQGEFFYCKMDWFLN--YLNNKTWDAYHNFCSSKK 428 Query 373 NSIITIPC--------RIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGM 424 PC I+ +IN + + YAPP EG L CRS +TG+ + + + Sbjct 429 KGHAPGPCVQRTYVAYHIRSVINDSYTLSKKTYAPPREGHLQCRSTVTGMTVELNYNSKN 488 Query 425 HDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVV--EREKR 473 P+ + W +EL +YK+VEI P+G APT+ +R ER+KR Sbjct 489 RTNVTLSPQ---IESIWAAELGRYKLVEITPIGFAPTEVRRYTGGHERQKR 536 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE BEN)] Sequence ID: P18094.1 Length: 860 Range 1: 25 to 500 Score:248 bits(632), Expect:2e-72, Method:Compositional matrix adjust., Identities:170/504(34%), Positives:241/504(47%), Gaps:69/504(13%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YG+P WK A LFCA+ + + W T C+P + + QE++L NVTE F+ Sbjct 25 YVTVFYGIPAWKNASIPLFCATKNR-------DTWGTIQCLPDNDDYQEIIL-NVTEAFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCS---------------------- 100 W N + EQ +D+ L++ S+KPCVKLTPLCV ++CS Sbjct 77 AWNNTVTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSRVQGNTTTPNPRTSSSTTSRPP 136 Query 101 -------NRTID--YNNRTDNMG-GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNE 150 N T + NN +G E+ C FNM +DK+ + +Y D+V Sbjct 137 TSAASIINETSNCIENNTCAGLGYEEMMQCEFNMKGLEQDKKRRYKDTWYLEDVVC---- 192 Query 151 SSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNV 209 + T+G + +CNTS I ++C K +D + YCAP G+A+L+CN+ ++G P C V Sbjct 193 DNTTAGTCYMRHCNTSIIKESCDKHYWDAMRFRYCAPPGFALLRCNDTNYSGFEPKCTKV 252 Query 210 STIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNN 269 CT + ST NG+ AE I DN I ++ ++ + C RP N Sbjct 253 VAASCTRMMETQTSTWFGFNGTRAENRTYIYWHG-RDNRTIISLNKYYNLTMRCKRPGNK 311 Query 270 TRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA------ 323 T I + G F++ I RQA C W + +QEV + L +H K Sbjct 312 TVLPITLMSGLVFHSQ-PINTRPRQAWCRFG-GRWREAMQEVKQTLVQHPRYKGINDTGK 369 Query 324 IKFAK-HSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRI 382 I F K +G D E+ NCRGEF YCN + N N T C I Sbjct 370 INFTKPGAGSDPEVAFMWTNCRGEFLYCNMTWFLNWVEDKNQTRRNY----------CHI 419 Query 383 KQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEI-FRPEGGDMRDNW 441 KQIIN W VG+ +Y PP EG L C S +T ++ D T I F E ++ + Sbjct 420 KQIINTWHKVGKNVYLPPREGELACESTVTSIIANIDIDKNRTHTNITFSAEVAEL---Y 476 Query 442 RSELYKYKVVEIKPLGIAPTKAKR 465 R EL YK++EI P+G APT +R Sbjct 477 RLELGDYKLIEITPIGFAPTDQRR 500 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27757.1 Length: 768 Range 1: 25 to 538 Score:246 bits(628), Expect:2e-72, Method:Compositional matrix adjust., Identities:173/529(33%), Positives:260/529(49%), Gaps:73/529(13%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 W+TV+YGVPVWK + FC + +WAT C+P D + E+ L N+TE F Sbjct 25 WITVFYGVPVWKNSSVQAFCMTPTT-------RLWATTNCIPDDHDYTEVPL-NITEPFE 76 Query 63 MW--ENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC-----------------SNRT 103 W N +V Q +I L++Q+LKPCVKL+PLC+ ++C + Sbjct 77 AWADRNPLVAQAGSNIHLLFEQTLKPCVKLSPLCIKMNCVELKGSATSTPATSTTAGTKL 136 Query 104 IDYNNRTDN-------------MGGEI-KNCSFNMTTEVRDKREKVHALFYRLDIVPLKN 149 N+TD+ M E NC+F M +RD+++ ++ +I ++ Sbjct 137 PCVRNKTDSNLQSCNDTIIEKEMNDEAASNCTFAMAGYIRDQKKNYSVVWNDAEIFCKRS 196 Query 150 ESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNN 208 S N + + +I+CN S I +AC K +D + + YCAPAGYA+LKCN+ + G P C+N Sbjct 197 TSHNGTKECYMIHCNDSVIKEACDKTYWDELRLRYCAPAGYALLKCNDWDYAGFKPECSN 256 Query 209 VSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNE--SVEINCTRP 266 VS + CT V+T LLLNGS +E I K+ N ++++ LN+ ++ + C RP Sbjct 257 VSVVHCTTLMNTTVTTGLLLNGSYSENRTQIWQKHGVSN-DSVLILLNKHYNLTVTCKRP 315 Query 267 NNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS---RTAWNKTLQEVGKKLAEHFP--N 321 N T + I G F++ + +RQA C+ + AW + +E+ K E + N Sbjct 316 GNKTVLPVTIMAGLVFHSQ-KYNTRLRQAWCHFQGNWKGAWKEVQEEIVKLPKERYQGTN 374 Query 322 KAIK-FAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNST--------ENITGTE 372 K F + GD E FNC+GEFFYC N Y N T +N G Sbjct 375 DTNKIFLQRQFGDPEAANLWFNCQGEFFYCKMDWFLN--YLNNLTVDADHNHCKNNAGKG 432 Query 373 NS------IITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHD 426 S + C I+ +IN W + + YAPP EG L C S +TG+ + + Sbjct 433 RSPGPCVQRTYVACHIRSVINDWYTISKKTYAPPREGHLQCTSTVTGMTVELNYNNQNRT 492 Query 427 TEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRV--VEREKR 473 P+ + W +EL +YK+VEI P+G APT+ +R ER+KR Sbjct 493 NVTLSPQ---IETIWAAELGRYKLVEITPIGFAPTEVRRYTGGQERQKR 538 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12492.1 Length: 885 Range 1: 26 to 520 Score:248 bits(632), Expect:3e-72, Method:Compositional matrix adjust., Identities:164/512(32%), Positives:248/512(48%), Gaps:67/512(13%) Query 4 VTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFNM 63 VTV+YGVP WK A LFCA+ + + W T C+P + + E+ + NVTE F+ Sbjct 26 VTVFYGVPAWKNATIPLFCATKNR-------DTWGTTQCLPDNDDYSELAI-NVTEAFDA 77 Query 64 WENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDY----------------- 106 W+N + EQ +D+ +L++ S+KPCVKLTPLC+ + C+ D Sbjct 78 WDNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTGNAGTTTTAITTT 137 Query 107 ------------------NNRTDNMGGE-IKNCSFNMTTEVRDKREKVHALFYRLDIVPL 147 NN + E + C FNMT RDK+++ + +Y D++ Sbjct 138 ATPSVAENVINESNPCIKNNSCAGLEQEPMIGCKFNMTGLNRDKKKEYNETWYSRDLICE 197 Query 148 KNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-C 206 ++ + + S Y + +CNTS I ++C K +D I YCAP GYA+L+CN+ + G P C Sbjct 198 QSANESESKCY-MHHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYLGFAPNC 256 Query 207 NNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNE--SVEINCT 264 + V CT + ST NG+ AE I ++ I+ LN+ ++ + C Sbjct 257 SKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGKSNRT---IISLNKYYNLTMRCR 313 Query 265 RPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEH------ 318 RP N T + I G F++ I +QA C +W K +QEV + L +H Sbjct 314 RPENKTVLPVTIMSGLVFHSQ-PINERPKQAWCWFE-GSWKKAIQEVKETLVKHPRYTGT 371 Query 319 FPNKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIIT- 377 + I +GGD E+T NCRGEF YC + N + +N Sbjct 372 NDTRKINLTAPAGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDQKGGRWKQQNRKEQQ 431 Query 378 ----IPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPE 433 +PC I+QIIN W VG+ +Y PP EG LTC S +T L+ D ++ E Sbjct 432 KKNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIAEID---WINSNETNITM 488 Query 434 GGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 ++ + +R EL YK++EI P+G+APT +R Sbjct 489 SAEVAELYRLELGDYKLIEITPIGLAPTSVRR 520 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-2 B_UC1] Sequence ID: Q76638.1 Length: 857 Range 1: 27 to 504 Score:240 bits(613), Expect:1e-69, Method:Compositional matrix adjust., Identities:167/499(33%), Positives:250/499(50%), Gaps:57/499(11%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YG+P W+ A LFCA+ + + W T C+P + + E+ + N+TE F+ Sbjct 27 YVTVFYGIPAWRNATVPLFCATTNR-------DTWGTVQCLPDNGDYTEISV-NITEAFD 78 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRTIDY---------------N 107 W N + EQ D+ SL++ S+KPCVKLTPLCV + C+N + Sbjct 79 AWNNTVTEQAVDDVWSLFETSIKPCVKLTPLCVAMRCNNTGTNTTTKPITTPITTTKPSE 138 Query 108 NRTDNMGGEIKN-------------CSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNT 154 N ++ IKN C FNMT RD++++ +Y D L+ ++T Sbjct 139 NLLNDTSPCIKNDTCPGIGLENTVDCYFNMTGLRRDEKKQYKDTWYEKD---LECNGNST 195 Query 155 SGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQ 213 S + CNTS I ++C K +D + YCAP GYA+L+CN+ ++G P C+ V Sbjct 196 STICYMRTCNTSVIQESCDKHYWDSLRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSS 255 Query 214 CTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKS 273 CT + ST NG+ E + + DN I ++ ++ ++C RP N T Sbjct 256 CTRMMETQTSTWFGFNGTRTENRTYMYWHS-KDNRTIISLNKYYNLTMHCRRPGNKTVIP 314 Query 274 IRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA------IKFA 327 I I G F++ + RQA C + W + ++EV + + +H K I+ Sbjct 315 ITIMSGLNFHSQ-PLNTRPRQAWCWF-KGNWIEAIREVKETIIKHPRYKGTNNTERIRLV 372 Query 328 KHSGG-DLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQII 386 S G D E+ NCRGEFFYCN T+ N EN TGT + C IKQI+ Sbjct 373 GPSAGSDPEVRHMWTNCRGEFFYCNM------TWFLNWVENRTGTTQKNY-VTCHIKQIV 425 Query 387 NMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWRSELY 446 N W VG+ +Y PP EG L+C S++T L+ D +DT+ ++ + +R EL Sbjct 426 NTWHKVGKYVYLPPREGTLSCNSSVTSLIANIDVYYDGNDTKTNITMSAEVGELYRLELG 485 Query 447 KYKVVEIKPLGIAPTKAKR 465 YK+VEI P+G APT+ KR Sbjct 486 DYKLVEITPIGFAPTEIKR 504 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-2 B_EHO] Sequence ID: Q89607.1 Length: 852 Range 1: 26 to 509 Score:239 bits(609), Expect:3e-69, Method:Compositional matrix adjust., Identities:168/516(33%), Positives:253/516(49%), Gaps:78/516(15%) Query 4 VTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFNM 63 VTV+YG+P WK A LFCA+ + + W T C+P + + E+ L N+TE F+ Sbjct 26 VTVFYGIPAWKNASIPLFCATRNR-------DTWGTVQCLPDNDDYTEIQL-NITEAFDA 77 Query 64 WENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC-------------SNRTIDYNNRT 110 W+N + +Q +D+ SL++ S+KPCVKLTPLCVT+ C S+ ++ + +T Sbjct 78 WDNTVTDQATKDVWSLFETSIKPCVKLTPLCVTMKCNKTWSSASKETTTSSASLRSSTQT 137 Query 111 -----------DNMGG----EIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESSNTS 155 D+ G E+ +C F MT RD+ ++ +Y+ D+V K SN S Sbjct 138 LLNEDSKCIQNDSCAGIGLEEMIDCQFKMTGLKRDESKQYKDTWYKQDLVCEKGTRSNES 197 Query 156 GDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCT 215 Y + CNTS I ++C K +D + YCAP G+A+L+CN+ ++G P + + Sbjct 198 KCY-IKTCNTSIIQESCDKHYWDSLRFRYCAPPGFALLRCNDTKYSGFMPNCSKVVVSLY 256 Query 216 HGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTRKSIR 275 + ST NG+ AE I DN I ++ ++ ++C RP N IR Sbjct 257 RMMETQTSTWFGFNGTRAENRTYIYWHG-KDNRTIISLNSYYNLTMHCKRPGNKMVVPIR 315 Query 276 IGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNKA-------IKFAK 328 G F++ I +QA C + W + +QEV + + H P + I+ A+ Sbjct 316 TVSGILFHSQ-PINKRPKQAWCWF-KGNWTEAIQEVKETIKNH-PRYSGTTNISQIRLAE 372 Query 329 HS-GGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRIKQIIN 387 H+ D E+ NCRGEF YCN T+ N EN TG + + + C I+QI+N Sbjct 373 HARSSDPEVRYMWTNCRGEFLYCNM------TFFLNWVENRTGLKRNYAS--CHIRQIVN 424 Query 388 MWQGVGRAMYAPPIEGILTCRSNITGLLLTRDG--------GTGMHDTEIFRPEGGDMRD 439 W +GR +Y PP EG L+C S +T L+ D +E+++ E GD Sbjct 425 TWHKIGRNVYLPPREGELSCNSTVTSLIANIDWIDKNLTNITVSAEVSELYKLELGD--- 481 Query 440 NWRSELYKYKVVEIKPLGIAPTKAKR--RVVEREKR 473 YK+VEI P+G APT KR V R KR Sbjct 482 --------YKLVEITPIGFAPTSIKRYSSVTPRNKR 509 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15831.2 Length: 859 Range 1: 25 to 513 Score:233 bits(593), Expect:7e-67, Method:Compositional matrix adjust., Identities:168/513(33%), Positives:247/513(48%), Gaps:66/513(12%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YG+P W+ A L CA+ + + W T C+P + + E+ L N+TE F+ Sbjct 25 YVTVFYGIPAWRNATVPLICATTNR-------DTWGTVQCLPDNGDYTEIRL-NITEAFD 76 Query 63 MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN--------------------R 102 W+N + +Q D+ L++ S+KPCVKLTPLCV ++CS R Sbjct 77 AWDNTVTQQAVDDVWRLFETSIKPCVKLTPLCVAMNCSKTETNPGNASSTTTTKPTTTSR 136 Query 103 TIDYNNRTD---------NMG-GEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESS 152 + N TD +G EI C+F+MT RD+ ++ +Y D+ N Sbjct 137 GLKTINETDPCIKNDSCTGLGEEEIMQCNFSMTGLRRDELKQYKDTWYSEDL-ECNNTRK 195 Query 153 NTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVST 211 TS Y + CNT+ I ++C K +D + YCAP G+ +L+CN+ ++G P C+ V Sbjct 196 YTSRCY-IRTCNTTIIQESCDKHYWDSLRFRYCAPPGFFLLRCNDTNYSGFMPNCSKVVA 254 Query 212 IQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNESVEINCTRPNNNTR 271 CT + ST NG+ AE I DN I ++ ++ I+C RP N T Sbjct 255 SSCTRMMETQSSTWFGFNGTRAENRTYIYWHE-KDNRTIISLNTYYNLSIHCKRPGNKTV 313 Query 272 KSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKLAEHFPNK-------AI 324 IR G F++ I RQA C + W + ++EV + + +H K ++ Sbjct 314 VPIRTVSGLLFHSQ-PINKRPRQAWCWF-KGNWTEAIKEVKRTIIKHPRYKGGAKNITSV 371 Query 325 KFAKH--SGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTENITGTENSIITIPCRI 382 K G D E T NCRGEF YCN T+ N EN T T PC I Sbjct 372 KLVSEHGKGSDPETTYMWTNCRGEFLYCNM------TWFLNWVENKTNTTRRNYA-PCHI 424 Query 383 KQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTRDGGTGMHDTEIFRPEGGDMRDNWR 442 +QIIN W VG+ +Y PP EG L+C S +T L+ + + + ++ + +R Sbjct 425 RQIINTWHKVGKNIYLPPREGELSCNSTVTSLIANINSDNSTTNISV----SAEVSELYR 480 Query 443 SELYKYKVVEIKPLGIAPTKAKR--RVVEREKR 473 EL YK+VEI P+G APT +R V R KR Sbjct 481 LELGDYKLVEITPIGFAPTDVRRYSSVKPRNKR 513 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (AGM3 ISOLATE)] Sequence ID: P27977.1 Length: 877 Range 1: 24 to 533 Score:232 bits(592), Expect:1e-66, Method:Compositional matrix adjust., Identities:167/527(32%), Positives:252/527(47%), Gaps:81/527(15%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 WVTV+YGVPVWK + FC + +WAT +P D + E+ L N+TE F Sbjct 24 WVTVFYGVPVWKNSSVQAFCMTPTT-------RLWATTNSIPDDHDYTEVPL-NITEPFE 75 Query 63 MW--ENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHC--------------------- 99 W N +V Q +I L++Q+LKPCVKL+PLC+ + C Sbjct 76 AWADRNPLVAQAGSNIHLLFEQTLKPCVKLSPLCIKMSCVELNSSEPTTTPKSTTASTTN 135 Query 100 -----------SNRT---IDYNNRT---DNMGGE-IKNCSFNMTTEVRDKREKVHALFYR 141 N+T ++ N T + E NC+F M VRD+++K ++ Sbjct 136 ITASTTTLPCVQNKTSTVLESCNETIIEKELNEEPASNCTFAMAGYVRDQKKKYSVVWND 195 Query 142 LDIVPLKNESSNTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFN 201 +I+ K +SN + +I+CN S I +AC K +D + + YCAPAG+A+LKCN+ + Sbjct 196 AEIMCKKGNNSNR--ECYMIHCNDSVIKEACDKTYWDELRLRYCAPAGFALLKCNDYDYA 253 Query 202 GTGP-CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRSKNLTDNVKTIIVHLNE--S 258 G C+NVS + CT+ V+T LLLNGS +E I K+ N +++V N+ + Sbjct 254 GFKTNCSNVSVVHCTNLINTTVTTGLLLNGSYSENRTQIWQKHRVSN-DSVLVLFNKHYN 312 Query 259 VEINCTRPNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNIS---RTAWNKTLQEVGKKL 315 + + C RP N T + I G F++ +RQA C+ R AW + E+ K Sbjct 313 LTVTCKRPGNKTVLPVTIMAGLVFHSQ-RYNTRLRQAWCHFQGNWRGAWKEVKNEIVKLP 371 Query 316 AEHFP---NKAIKFAKHSGGDLEITTHSFNCRGEFFYCNTSSLFNSTYTPNSTEN----- 367 + + + + + GD E FNC+GEFFYC N Y N T + Sbjct 372 KDRYQGTNDTEEIYLQRLFGDPEAANLWFNCQGEFFYCKMDWFLN--YLNNRTVDPDHNP 429 Query 368 ITGTEN---------SIITIPCRIKQIINMWQGVGRAMYAPPIEGILTCRSNITGLLLTR 418 GT+ + C I+ +IN W + R YAPP EG L C S +TG+ + Sbjct 430 CNGTKGKGKAPGPCAQRTYVACHIRSVINDWYTLSRKTYAPPREGHLQCTSTVTGMSVEL 489 Query 419 DGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR 465 + + P+ + W +EL +YK+VEI P+G APT+ +R Sbjct 490 NYNSKNRTNVTLSPQ---IETIWAAELGRYKLVEITPIGFAPTEVRR 533 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32 [Simian immunodeficiency virus (ISOLATE GB1)] Sequence ID: P22380.1 Length: 821 Range 1: 48 to 569 Score:160 bits(406), Expect:2e-41, Method:Compositional matrix adjust., Identities:148/549(27%), Positives:228/549(41%), Gaps:105/549(19%) Query 3 WVTVYYGVPVWKEAKTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEMVLENVTENFN 62 +VTV+YGVPVWKEAKT L CA+D + +W T C+P+ P+ E+ + ++ ENF Sbjct 48 YVTVFYGVPVWKEAKTHLICATDNSS-------LWVTTNCIPSLPDYDEVEIPDIKENFT 100 Query 63 --MWENDMVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSNRT----------------- 103 + EN +V Q + S+ D LKPCVK+ P CV + C Sbjct 101 GLIRENQIVYQAWHAMGSMLDTILKPCVKINPYCVKMQCQETENVSATTAKPITTPTTTS 160 Query 104 -----------IDYNNRTDNMGGEIKNCSFNMTTEVRDKREKVHALFYRLDIVPLKNESS 152 +D NN T+ C +N+T RD +E++ F R D V +N + Sbjct 161 TVASSTEIYLDVDKNN-TEEKVERNHVCRYNITGLCRDSKEEIVTNF-RGDDVKCENNTC 218 Query 153 NTSGDYRLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTI 212 + +CN S T+ C K I C P GY +L+ N K N C+N+S + Sbjct 219 YMN------HCNESVNTEDCQKGLLIRC-ILGCVPPGYVMLRYNEK-LNNNKLCSNISAV 270 Query 213 QCTHGTKPVVSTQLLLNGSLAEEEIII------RSKNLTDNVKTII-VHLNESVEINCTR 265 QCT VS+ NG++ +E +I R K + V ++I C R Sbjct 271 QCTQHLVATVSSFFGFNGTMHKEGELIPIDDKYRGPEEFHQRKFVYKVPGKYGLKIECHR 330 Query 266 PNNNTRKSIRIGPGQAFYATGEIIGDIRQAHCNISRTAWNKTLQEVGKKL---------- 315 N + S G FY E ++++ C + W L + K+L Sbjct 331 KGNRSVVSTPSATGLLFYHGLEPGKNLKKGMCTF-KGRWGLALWSLAKELNKLNDSIKVN 389 Query 316 --AEHF----------PNKAIKFAK----------HSGGDLEITTHSFNCRGEFFYCNTS 353 ++F +K +FAK + GD C+GE F+CN + Sbjct 390 QTCKNFTSTGEENKQNTDKQKEFAKCIKTLKIDNYTTSGDRAAEMMMMTCQGEMFFCNVT 449 Query 354 SLFNSTYTPNSTENITGTENSIITIPCRIKQIINMWQGVGRAMYAPPIEGI---LTCRSN 410 + + PN + C+I+QI++ W VGR +Y PP G + C Sbjct 450 RIMRAWNDPNE-------KKWYPYASCQIRQIVDDWMQVGRKIYLPPTSGFNNHIRCTHR 502 Query 411 ITGLLLTR---DGGTGMHDTEIFRPEGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRV 467 +T + D + P + + + + YK+V+I P+GIAPT KR Sbjct 503 VTEMYFEMQKIDSNETKMQIKFLPP--SETSNQFVAYGAHYKLVKIMPIGIAPTDVKRHT 560 Query 468 V---EREKR 473 + +EKR Sbjct 561 LPEHHKEKR 569