########################################
# Program: needle
# Rundate: Thu 12 Dec 2013 01:15:23
# Commandline: needle
#    [-asequence] r46135-209.fasta
#    [-bsequence] trna_bacsu.fasta:BSn5_t20966
# Align_format: srspair
# Report_file: al591983.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: AL591983.1
# 2: BSn5_t20966
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 82
# Identity:      60/82 (73.2%)
# Similarity:    60/82 (73.2%)
# Gaps:          12/82 (14.6%)
# Score: 197.0
# 
#
#=======================================

AL591983.1         1 GGGCCT-TAGCTCAGCTGG-GAGAG----CGCCTGCTTTGCACGCAGGAG     44
                     |||||| |||||||||||| .||||    ||||||.|    |.||..|||
BSn5_t20966        1 gggcctgtagctcagctggttagagcgcacgcctgat----aagcgtgag     46

AL591983.1        45 GTCAGCGGTTCGATCCCGCT-AGGCTCCACCA     75
                     |||.|.|||||||..||.|| |||| ||||||
BSn5_t20966       47 gtcggtggttcgagtccactcaggc-ccacca     77


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