TBLASTN 2.2.28+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: lm_genome.fasta
           12 sequences; 2,945,078 total letters



Query= GLUTAMINE AMIDOTRANSFERASE FOR PYRIDOXAL PHOSPHATE SYNTHESIS

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  embl|AL591982|AL591982 Listeria monocytogenes strain EGD, compl...   473    6e-152


> embl|AL591982|AL591982 Listeria monocytogenes strain EGD, complete 
genome, segment 10/12 
Length=295050

 Score =  473 bits (1216),  Expect = 6e-152, Method: Compositional matrix adjust.
 Identities = 240/292 (82%), Positives = 269/292 (92%), Gaps = 0/292 (0%)
 Frame = +2

Query  3      QTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMA  62
              + GT+RVKRGMA+MQKGGVIMDV+NAEQAKIAEEAGAVAVMALERVP+DIRAAGGVARMA
Sbjct  81338  KVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMA  81517

Query  63     DPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYT  122
              DP IVEEVM AVSIPVMAKARIGHI EARVLEAMGVDYIDESEVLTPAD+EFHL K+++T
Sbjct  81518  DPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFT  81697

Query  123    VPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDEL  182
              VPFVCGCRD+GEA RRI EGA+MLRTKGEPGTGNIVEAVRHMR+VN Q+R++  M++DEL
Sbjct  81698  VPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDEL  81877

Query  183    MTEAKNLGAPYELLLQIKKDGKLPVVNFaaggvatpadaaLMMQLGADGVFVGSGIFKSD  242
              M  AKN GAPYEL+ +IK  GKLPVVNFAAGGVATPADAALMM+LGADGVFVGSGIFKSD
Sbjct  81878  MVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSD  82057

Query  243    NPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQERGW  294
              NPAKFA AIV+ATT++TDY+LI +LSKELG+ MKGIE+S L PE RMQ+R +
Sbjct  82058  NPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF  82213



Lambda      K        H        a         alpha
   0.317    0.132    0.365    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 206926856


  Database: lm_genome.fasta
    Posted date:  Nov 26, 2013  8:15 PM
  Number of letters in database: 2,945,078
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40