Basic Statistics
Measure | Value |
---|---|
Filename | Ath_tae_CTTGTA_L003_R1_004.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4000000 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 35 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 1000 | 0.0 | 18.505238 | 44-45 |
TGCCGTC | 920 | 0.0 | 18.0516 | 48-49 |
TATGCCG | 1025 | 0.0 | 17.359728 | 46-47 |
TCGGAAG | 1810 | 0.0 | 15.729451 | 3 |
GAGCACA | 1855 | 0.0 | 14.602571 | 9 |
AGAGCAC | 1875 | 0.0 | 14.446267 | 8 |
ATGCCGT | 945 | 0.0 | 13.55712 | 46-47 |
GTATGCC | 1035 | 0.0 | 13.29498 | 44-45 |
GATCGGA | 2395 | 0.0 | 13.083001 | 1 |
CGTCTGA | 1405 | 0.0 | 13.019055 | 16-17 |
CGGAAGA | 2280 | 0.0 | 12.90321 | 4 |
CACACGT | 1365 | 0.0 | 12.882499 | 12-13 |
GGCCCGG | 370 | 1.2923332E-5 | 12.834732 | 6 |
GCACACG | 1040 | 0.0 | 12.795214 | 10-11 |
GCCGTCT | 970 | 0.0 | 12.718534 | 48-49 |
CACGTCT | 1490 | 0.0 | 12.2802 | 14-15 |
ATCGGAA | 2550 | 0.0 | 11.916299 | 2 |
AGCACAC | 1620 | 0.0 | 11.734587 | 10-11 |
CTCGTAT | 1555 | 0.0 | 11.596638 | 42-43 |
AGTCACC | 1630 | 0.0 | 11.511984 | 28-29 |