TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= aroE description (272 letters) Database: 3g 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE004096|AE004096 Vibrio cholerae O1 biovar eltor str. N169... 245 1e-65 embl|AE006166|AE006166 Pasteurella multocida subsp. multocida st... 243 3e-65 embl|AE004442|AE004442 Pseudomonas aeruginosa PAO1, section 3 of... 241 1e-64 embl|AE004462|AE004462 Pseudomonas aeruginosa PAO1, section 23 o... 70 5e-13 embl|AE006179|AE006179 Pasteurella multocida subsp. multocida st... 67 7e-12 embl|AE004486|AE004486 Pseudomonas aeruginosa PAO1, section 47 o... 28 2.2 embl|AE004120|AE004120 Vibrio cholerae O1 biovar eltor str. N169... 28 2.2 embl|AE004822|AE004822 Pseudomonas aeruginosa PAO1, section 383 ... 28 2.8 embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 o... 27 6.3 embl|AE004481|AE004481 Pseudomonas aeruginosa PAO1, section 42 o... 27 8.3 >embl|AE004096|AE004096 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 4 of 251 of the complete chromosome. Length = 10846 Score = 245 bits (625), Expect = 1e-65 Identities = 126/271 (46%), Positives = 171/271 (63%), Gaps = 1/271 (0%) Frame = +2 Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60 ++ YAVFGNPI HSKSPFIH FA+Q Y P++ F FF+ GG+G NV Sbjct: 6857 IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNV 7036 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120 TVPFKEEA+ AD LTERA LAGAVNTL +L+DG +LGDNTDG GL+ DL Sbjct: 7037 TVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGA 7216 Query: 121 XXXXXXXXXXSRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGH 179 +RGVL PLL ++T+TNRT ++AE+LA+L A G ++A + ++L+ Sbjct: 7217 TILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK-Q 7393 Query: 180 EFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLG 239 +D+IIN+TS+ + G++PAI + CYDM Y KG T F W Q G + DGLG Sbjct: 7394 SYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLG 7573 Query: 240 MLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL 270 MLV QAA +F+LW G+ P + ++++L++ L Sbjct: 7574 MLVGQAAESFMLWRGLRPGTKQILRELRKNL 7666 >embl|AE006166|AE006166 Pasteurella multocida subsp. multocida str. Pm70 section 133 of 204 of the complete genome. Length = 11061 Score = 243 bits (621), Expect = 3e-65 Identities = 130/266 (48%), Positives = 165/266 (62%), Gaps = 1/266 (0%) Frame = +1 Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60 M+ YAV+GNPIA SKSP IHQ FA Q + Y +L DF L FF G KG N+ Sbjct: 1810 MDKYAVWGNPIAQSKSPQIHQIFANQTQQQMEYVAMLGDEQDFEQQLRVFFEKGAKGCNI 1989 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120 T PFKE AF AD +ER A A NTL +L+DGRL GDNTDG GL+SDL+RL + Sbjct: 1990 TAPFKERAFQLADLHSERCLTAEACNTLKKLDDGRLYGDNTDGAGLVSDLQRLGWLKPEQ 2169 Query: 121 XXXXXXXXXXSRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE 180 ++GVLLPLL + + NRT+S+AE+LA+ FA G IQA+ +D + Sbjct: 2170 TILILGAGGATKGVLLPLLQAKQHIVLANRTLSKAEDLAQKFAQYGQIQAVELDNIPVQS 2349 Query: 181 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQK-GKTPFLAWCEQRGSKRNADGLG 239 FDLIINATSSG+ G + ++ YDM Y K TPF+A C+Q G + +DG G Sbjct: 2350 FDLIINATSSGLHGQTVQMNPEILQNATALYDMQYAKQADTPFVALCKQLGKQNVSDGFG 2529 Query: 240 MLVAQAAHAFLLWHGVLPDVEPVIKQ 265 MLVAQAAHAF LW GV+P+ E +++Q Sbjct: 2530 MLVAQAAHAFHLWRGVMPEFEALLEQ 2607 >embl|AE004442|AE004442 Pseudomonas aeruginosa PAO1, section 3 of 529 of the complete genome. Length = 10141 Score = 241 bits (616), Expect = 1e-64 Identities = 136/274 (49%), Positives = 165/274 (60%), Gaps = 3/274 (1%) Frame = +3 Query: 1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60 M+ Y VFGNPI HSKSP IH+ FA+Q Y LAP++DF FF G KGANV Sbjct: 1101 MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQG-KGANV 1277 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDL-ERLSFXXXX 119 TVPFKEEA+ DEL+ERA AGAVNTL+RL DGRL GDNTDG GLL DL Sbjct: 1278 TVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRG 1457 Query: 120 XXXXXXXXXXXSRGVLLPLL-SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEG 178 RGVL P L + I NRT +A +LA+ FA G++ E+EG Sbjct: 1458 KRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEG 1637 Query: 179 HEFDLIINATSSGISGDIPAIPSSLIHPG-IYCYDMFYQKGKTPFLAWCEQRGSKRNADG 237 FDLI+N TS+ ++GD+P + S+I PG CYDM Y K T F W +RG+ R DG Sbjct: 1638 -PFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDG 1814 Query: 238 LGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELS 271 LGMLV QAA AF LW GV P PV++ L+ +L+ Sbjct: 1815 LGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLA 1916 >embl|AE004462|AE004462 Pseudomonas aeruginosa PAO1, section 23 of 529 of the complete genome. Length = 9953 Score = 70.5 bits (171), Expect = 5e-13 Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 11/264 (4%) Frame = -2 Query: 6 VFGNPIAHSKSPFIHQQFAQQLNIEHPYGRV-LAPINDFINTLNAFFSA----GGKGANV 60 + G I S++P +H++ I + Y + L P+ + L +A G G NV Sbjct: 7741 LIGAGIQASRTPALHEREGDAQGIRYLYRLIDLDPLGKSADDLEFLLAAASDLGFTGLNV 7562 Query: 61 TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120 T P K+ D+L+ A GAVNT++ L DGR +G NTD +G R Sbjct: 7561 TFPCKQAIIPLLDDLSAEARGIGAVNTVV-LRDGRRIGHNTDCLGFAEGFRRGLADAPRQ 7385 Query: 121 XXXXXXXXXXSRGVLLPLLSLDC-AVTITNRTVSRAEELA-KLFAHTGSIQALSMDELEG 178 V LL+ + + + +RA+ LA L H G+ +AL+ +L G Sbjct: 7384 RVVQMGAGGAGAAVAHALLAEGVERLVLFDVDPARAQALADNLNQHFGAPRALAGSDLAG 7205 Query: 179 HEFDL--IINATSSGISGDIPA--IPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRN 234 D ++N T G++ +P +P+ L+ ++ ++ Y +T L G R Sbjct: 7204 ALGDAQGLVNTTPVGMA-KLPGMPVPAELLRADLWVAEVIYFPLETELLRQARALGC-RT 7031 Query: 235 ADGLGMLVAQAAHAFLLWHGVLPD 258 DG M V QA AF L+ GV D Sbjct: 7030 LDGGTMAVFQAVKAFELFSGVTAD 6959 >embl|AE006179|AE006179 Pasteurella multocida subsp. multocida str. Pm70 section 146 of 204 of the complete genome. Length = 11375 Score = 66.6 bits (161), Expect = 7e-12 Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 3/236 (1%) Frame = -1 Query: 20 HQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERA 79 H Q+L + + Y +D + + + G +G V++PFKE DE++ A Sbjct: 6710 HNYLYQKLGLNYIYKAFTT--SDIEHAVKGVRALGIRGCAVSMPFKESCMPFLDEISASA 6537 Query: 80 ALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXXXXXXXXXXXXSRGVLLPLL 139 +VNT++ EDG L NTD + + +++ V Sbjct: 6536 KAIESVNTIVN-EDGYLKAYNTDYIAISKLIQQYQLDKHHKVIVQGSGGMAKAVVAAFKN 6360 Query: 140 SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG---DI 196 + +++ R + + LA L+ + ++ LEG+E +++NAT G+SG + Sbjct: 6359 AGFHDLSVYARNATTGQYLANLYGYQ------YINHLEGNEASILVNATPMGMSGGEENT 6198 Query: 197 PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLW 252 A P SLI +D+ +TP + + +Q+ +K+ G ++V QA F L+ Sbjct: 6197 LAFPESLIEQASSIFDVVALPAETPLIQYAKQQ-NKQTISGAEVIVLQAVEQFELY 6033 >embl|AE004486|AE004486 Pseudomonas aeruginosa PAO1, section 47 of 529 of the complete genome. Length = 12874 Score = 28.5 bits (62), Expect = 2.2 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +3 Query: 65 KEEAFARADELTERAALAGAVNTL 88 ++EAFARA + ER LAG TL Sbjct: 9729 RDEAFARARQALERTVLAGMATTL 9800 >embl|AE004120|AE004120 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 28 of 251 of the complete chromosome. Length = 9995 Score = 28.5 bits (62), Expect = 2.2 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 5 AVFGNPIAHSKSPFIHQQFAQQLNIEHP 32 AV GN + K+P I QQ +L IEHP Sbjct: 3195 AVMGNAGSFFKNPVISQQAFARLQIEHP 3278 >embl|AE004822|AE004822 Pseudomonas aeruginosa PAO1, section 383 of 529 of the complete genome. Length = 10935 Score = 28.1 bits (61), Expect = 2.8 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%) Frame = -3 Query: 151 TVSRAEELAKLFAHTGSI----QALSMDELEGHEFDLII 185 TV ELA+ AH GSI +L+++ + G EF+L I Sbjct: 1510 TVRAPRELARYIAHKGSITVDGTSLTVNAVNGAEFELTI 1394 >embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 of 529 of the complete genome. Length = 10832 Score = 26.9 bits (58), Expect = 6.3 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -2 Query: 33 YGRVLAPINDFINTLNAFFSAGGKGANV-TVPFKEEAFARAD 73 YG L P+ND +SAG N+ +P +E AR D Sbjct: 277 YGEKLKPVNDEAKAWKTVWSAGQGAGNIDDLPGVDELVARLD 152 >embl|AE004481|AE004481 Pseudomonas aeruginosa PAO1, section 42 of 529 of the complete genome. Length = 11276 Score = 26.6 bits (57), Expect = 8.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -1 Query: 194 GDIPAIPSSLIHPG 207 GD+P +P +L HPG Sbjct: 8360 GDVPPVPGTLFHPG 8319 Database: 3g Posted date: Oct 2, 2006 12:02 AM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,517,024 Number of Sequences: 1077 Number of extensions: 48978 Number of successful extensions: 268 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 163 Number of HSP's gapped (non-prelim): 117 length of query: 272 length of database: 4,206,551 effective HSP length: 92 effective length of query: 180 effective length of database: 4,107,467 effective search space: 739344060 effective search space used: 739344060 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)