BLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome.
         (85 letters)

Database: bs 
           1 sequences; 4,214,630 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosom...    30   0.24 

>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosome, complete
               sequence.
          Length = 4214630

 Score = 30.2 bits (15), Expect = 0.24
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 56      tcgaaggttcgaatccttc 74
               |||||||||||| ||||||
Sbjct: 4154186 tcgaaggttcgagtccttc 4154168



 Score = 30.2 bits (15), Expect = 0.24
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 56      tcgaaggttcgaatccttc 74
               |||||||||||| ||||||
Sbjct: 3172577 tcgaaggttcgagtccttc 3172559



 Score = 30.2 bits (15), Expect = 0.24
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 56     tcgaaggttcgaatccttc 74
              |||||||||||| ||||||
Sbjct: 528694 tcgaaggttcgagtccttc 528712



 Score = 30.2 bits (15), Expect = 0.24
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                
Query: 56    tcgaaggttcgaatccttc 74
             |||||||||||| ||||||
Sbjct: 95610 tcgaaggttcgagtccttc 95628



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 38      aatctgccgtcat 50
               |||||||||||||
Sbjct: 4030555 aatctgccgtcat 4030543



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 37      aaatctgccgtca 49
               |||||||||||||
Sbjct: 3526386 aaatctgccgtca 3526374



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 64      tcgaatccttccc 76
               |||||||||||||
Sbjct: 3287760 tcgaatccttccc 3287748



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 60      aggttcgaatcct 72
               |||||||||||||
Sbjct: 3172118 aggttcgaatcct 3172106



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 60      aggttcgaatcct 72
               |||||||||||||
Sbjct: 3171142 aggttcgaatcct 3171130



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 11      ccgagcggccaaa 23
               |||||||||||||
Sbjct: 2488616 ccgagcggccaaa 2488628



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 60     aggttcgaatcct 72
              |||||||||||||
Sbjct: 950965 aggttcgaatcct 950977



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 45     cgtcatcgacttc 57
              |||||||||||||
Sbjct: 918785 cgtcatcgacttc 918797



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 39     atctgccgtcatc 51
              |||||||||||||
Sbjct: 882884 atctgccgtcatc 882872



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 60     aggttcgaatcct 72
              |||||||||||||
Sbjct: 528314 aggttcgaatcct 528326



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 60     aggttcgaatcct 72
              |||||||||||||
Sbjct: 166218 aggttcgaatcct 166230



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 60     aggttcgaatcct 72
              |||||||||||||
Sbjct: 165802 aggttcgaatcct 165814



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                          
Query: 60    aggttcgaatcct 72
             |||||||||||||
Sbjct: 96108 aggttcgaatcct 96120



 Score = 26.3 bits (13), Expect = 3.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                          
Query: 21    aaagggagcagac 33
             |||||||||||||
Sbjct: 77230 aaagggagcagac 77242


  Database: bs
    Posted date:  Oct 2, 2006  6:34 PM
  Number of letters in database: 4,214,630
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134
Number of Sequences: 1
Number of extensions: 134
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 85
length of database: 4,214,630
effective HSP length: 14
effective length of query: 71
effective length of database: 4,214,616
effective search space: 299237736
effective search space used: 299237736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)