BLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= aroE_Ecoli (819 letters) Database: 3g 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE004588|AE004588 Pseudomonas aeruginosa PAO1, section 149 ... 34 0.51 embl|AE004435|AE004435 Vibrio cholerae O1 biovar eltor str. N169... 34 0.51 embl|AE006205|AE006205 Pasteurella multocida subsp. multocida st... 32 2.0 embl|AE006048|AE006048 Pasteurella multocida subsp. multocida st... 32 2.0 embl|AE004223|AE004223 Vibrio cholerae O1 biovar eltor str. N169... 32 2.0 embl|AE004205|AE004205 Vibrio cholerae O1 biovar eltor str. N169... 32 2.0 embl|AE006154|AE006154 Pasteurella multocida subsp. multocida st... 30 8.0 embl|AE006109|AE006109 Pasteurella multocida subsp. multocida st... 30 8.0 embl|AE006060|AE006060 Pasteurella multocida subsp. multocida st... 30 8.0 embl|AE006059|AE006059 Pasteurella multocida subsp. multocida st... 30 8.0 embl|AE004901|AE004901 Pseudomonas aeruginosa PAO1, section 462 ... 30 8.0 embl|AE004859|AE004859 Pseudomonas aeruginosa PAO1, section 420 ... 30 8.0 embl|AE004816|AE004816 Pseudomonas aeruginosa PAO1, section 377 ... 30 8.0 embl|AE004810|AE004810 Pseudomonas aeruginosa PAO1, section 371 ... 30 8.0 embl|AE004807|AE004807 Pseudomonas aeruginosa PAO1, section 368 ... 30 8.0 embl|AE004776|AE004776 Pseudomonas aeruginosa PAO1, section 337 ... 30 8.0 embl|AE004758|AE004758 Pseudomonas aeruginosa PAO1, section 319 ... 30 8.0 embl|AE004691|AE004691 Pseudomonas aeruginosa PAO1, section 252 ... 30 8.0 embl|AE004662|AE004662 Pseudomonas aeruginosa PAO1, section 223 ... 30 8.0 embl|AE004661|AE004661 Pseudomonas aeruginosa PAO1, section 222 ... 30 8.0 embl|AE004564|AE004564 Pseudomonas aeruginosa PAO1, section 125 ... 30 8.0 embl|AE004517|AE004517 Pseudomonas aeruginosa PAO1, section 78 o... 30 8.0 embl|AE004506|AE004506 Pseudomonas aeruginosa PAO1, section 67 o... 30 8.0 embl|AE004459|AE004459 Pseudomonas aeruginosa PAO1, section 20 o... 30 8.0 embl|AE004392|AE004392 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004383|AE004383 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004305|AE004305 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004299|AE004299 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004254|AE004254 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004218|AE004218 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004213|AE004213 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004169|AE004169 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004167|AE004167 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004162|AE004162 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 embl|AE004128|AE004128 Vibrio cholerae O1 biovar eltor str. N169... 30 8.0 >embl|AE004588|AE004588 Pseudomonas aeruginosa PAO1, section 149 of 529 of the complete genome. Length = 10551 Score = 34.2 bits (17), Expect = 0.51 Identities = 17/17 (100%) Strand = Plus / Minus Query: 651 aggaaaaactccttttc 667 ||||||||||||||||| Sbjct: 5662 aggaaaaactccttttc 5646 >embl|AE004435|AE004435 Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 92 of 93 of the complete chromosome. Length = 13383 Score = 34.2 bits (17), Expect = 0.51 Identities = 17/17 (100%) Strand = Plus / Plus Query: 570 tggcatcagtggtgata 586 ||||||||||||||||| Sbjct: 4309 tggcatcagtggtgata 4325 >embl|AE006205|AE006205 Pasteurella multocida subsp. multocida str. Pm70 section 172 of 204 of the complete genome. Length = 10552 Score = 32.2 bits (16), Expect = 2.0 Identities = 16/16 (100%) Strand = Plus / Plus Query: 570 tggcatcagtggtgat 585 |||||||||||||||| Sbjct: 1811 tggcatcagtggtgat 1826 >embl|AE006048|AE006048 Pasteurella multocida subsp. multocida str. Pm70 section 15 of 204 of the complete genome. Length = 12232 Score = 32.2 bits (16), Expect = 2.0 Identities = 16/16 (100%) Strand = Plus / Plus Query: 182 cggtgccttttaaaga 197 |||||||||||||||| Sbjct: 3190 cggtgccttttaaaga 3205 >embl|AE004223|AE004223 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 131 of 251 of the complete chromosome. Length = 24353 Score = 32.2 bits (16), Expect = 2.0 Identities = 16/16 (100%) Strand = Plus / Minus Query: 67 tttgctcagcaactga 82 |||||||||||||||| Sbjct: 18471 tttgctcagcaactga 18456 >embl|AE004205|AE004205 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 113 of 251 of the complete chromosome. Length = 10386 Score = 32.2 bits (16), Expect = 2.0 Identities = 16/16 (100%) Strand = Plus / Minus Query: 119 tcaatgatttcatcaa 134 |||||||||||||||| Sbjct: 2524 tcaatgatttcatcaa 2509 >embl|AE006154|AE006154 Pasteurella multocida subsp. multocida str. Pm70 section 121 of 204 of the complete genome. Length = 11090 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 64 caatttgctcagcaa 78 ||||||||||||||| Sbjct: 7562 caatttgctcagcaa 7548 >embl|AE006109|AE006109 Pasteurella multocida subsp. multocida str. Pm70 section 76 of 204 of the complete genome. Length = 13603 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 574 atcagtggtgatatt 588 ||||||||||||||| Sbjct: 1311 atcagtggtgatatt 1325 >embl|AE006060|AE006060 Pasteurella multocida subsp. multocida str. Pm70 section 27 of 204 of the complete genome. Length = 10437 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 125 atttcatcaacacac 139 ||||||||||||||| Sbjct: 2567 atttcatcaacacac 2553 >embl|AE006059|AE006059 Pasteurella multocida subsp. multocida str. Pm70 section 26 of 204 of the complete genome. Length = 9671 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 551 ttattaatgcaacat 565 ||||||||||||||| Sbjct: 1979 ttattaatgcaacat 1965 >embl|AE004901|AE004901 Pseudomonas aeruginosa PAO1, section 462 of 529 of the complete genome. Length = 12399 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 735 ggctcatgcctttct 749 ||||||||||||||| Sbjct: 1454 ggctcatgcctttct 1440 >embl|AE004859|AE004859 Pseudomonas aeruginosa PAO1, section 420 of 529 of the complete genome. Length = 11461 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 454 gtatcccgcgcggaa 468 ||||||||||||||| Sbjct: 11137 gtatcccgcgcggaa 11123 >embl|AE004816|AE004816 Pseudomonas aeruginosa PAO1, section 377 of 529 of the complete genome. Length = 12667 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 739 catgcctttcttctc 753 ||||||||||||||| Sbjct: 9126 catgcctttcttctc 9112 >embl|AE004810|AE004810 Pseudomonas aeruginosa PAO1, section 371 of 529 of the complete genome. Length = 12119 Score = 30.2 bits (15), Expect = 8.0 Identities = 18/19 (94%) Strand = Plus / Minus Query: 718 atgctggtggcacaggcgg 736 |||||||||||||| |||| Sbjct: 7688 atgctggtggcacacgcgg 7670 >embl|AE004807|AE004807 Pseudomonas aeruginosa PAO1, section 368 of 529 of the complete genome. Length = 10698 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 375 cggcgctggtggagc 389 ||||||||||||||| Sbjct: 1064 cggcgctggtggagc 1078 >embl|AE004776|AE004776 Pseudomonas aeruginosa PAO1, section 337 of 529 of the complete genome. Length = 11673 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 730 caggcggctcatgcc 744 ||||||||||||||| Sbjct: 9855 caggcggctcatgcc 9841 >embl|AE004758|AE004758 Pseudomonas aeruginosa PAO1, section 319 of 529 of the complete genome. Length = 10453 Score = 30.2 bits (15), Expect = 8.0 Identities = 18/19 (94%) Strand = Plus / Plus Query: 719 tgctggtggcacaggcggc 737 |||||||||||| |||||| Sbjct: 3562 tgctggtggcactggcggc 3580 >embl|AE004691|AE004691 Pseudomonas aeruginosa PAO1, section 252 of 529 of the complete genome. Length = 12497 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 279 tggacgcctgctggg 293 ||||||||||||||| Sbjct: 8843 tggacgcctgctggg 8857 >embl|AE004662|AE004662 Pseudomonas aeruginosa PAO1, section 223 of 529 of the complete genome. Length = 11687 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 761 gtgttctgcctgacg 775 ||||||||||||||| Sbjct: 8820 gtgttctgcctgacg 8806 >embl|AE004661|AE004661 Pseudomonas aeruginosa PAO1, section 222 of 529 of the complete genome. Length = 13540 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 723 ggtggcacaggcggc 737 ||||||||||||||| Sbjct: 12766 ggtggcacaggcggc 12752 >embl|AE004564|AE004564 Pseudomonas aeruginosa PAO1, section 125 of 529 of the complete genome. Length = 10515 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 450 gacggtatcccgcgc 464 ||||||||||||||| Sbjct: 8101 gacggtatcccgcgc 8115 >embl|AE004517|AE004517 Pseudomonas aeruginosa PAO1, section 78 of 529 of the complete genome. Length = 10822 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 423 ggactgtgcggtgac 437 ||||||||||||||| Sbjct: 991 ggactgtgcggtgac 977 >embl|AE004506|AE004506 Pseudomonas aeruginosa PAO1, section 67 of 529 of the complete genome. Length = 10007 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 719 tgctggtggcacagg 733 ||||||||||||||| Sbjct: 6320 tgctggtggcacagg 6306 >embl|AE004459|AE004459 Pseudomonas aeruginosa PAO1, section 20 of 529 of the complete genome. Length = 9932 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 375 cggcgctggtggagc 389 ||||||||||||||| Sbjct: 608 cggcgctggtggagc 622 >embl|AE004392|AE004392 Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 49 of 93 of the complete chromosome. Length = 12031 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 116 ccatcaatgatttca 130 ||||||||||||||| Sbjct: 11427 ccatcaatgatttca 11441 >embl|AE004383|AE004383 Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 40 of 93 of the complete chromosome. Length = 10976 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 77 aactgaatattgaac 91 ||||||||||||||| Sbjct: 5114 aactgaatattgaac 5100 >embl|AE004305|AE004305 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 213 of 251 of the complete chromosome. Length = 10073 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 425 actgtgcggtgacaa 439 ||||||||||||||| Sbjct: 6318 actgtgcggtgacaa 6304 >embl|AE004299|AE004299 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 207 of 251 of the complete chromosome. Length = 15309 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 370 cttatcggcgctggt 384 ||||||||||||||| Sbjct: 1992 cttatcggcgctggt 1978 >embl|AE004254|AE004254 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 162 of 251 of the complete chromosome. Length = 10112 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 156 tgctggtggtaaagg 170 ||||||||||||||| Sbjct: 302 tgctggtggtaaagg 288 >embl|AE004218|AE004218 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 126 of 251 of the complete chromosome. Length = 18291 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 370 cttatcggcgctggt 384 ||||||||||||||| Sbjct: 7317 cttatcggcgctggt 7331 >embl|AE004213|AE004213 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 121 of 251 of the complete chromosome. Length = 14896 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 657 aactccttttctggc 671 ||||||||||||||| Sbjct: 7847 aactccttttctggc 7833 >embl|AE004169|AE004169 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 77 of 251 of the complete chromosome. Length = 11496 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Minus Query: 54 cattcatcagcaatt 68 ||||||||||||||| Sbjct: 6085 cattcatcagcaatt 6071 >embl|AE004167|AE004167 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 75 of 251 of the complete chromosome. Length = 10676 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 556 aatgcaacatccagt 570 ||||||||||||||| Sbjct: 2008 aatgcaacatccagt 2022 >embl|AE004162|AE004162 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 70 of 251 of the complete chromosome. Length = 12048 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 87 tgaacatccctatgg 101 ||||||||||||||| Sbjct: 2063 tgaacatccctatgg 2077 >embl|AE004128|AE004128 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 36 of 251 of the complete chromosome. Length = 21576 Score = 30.2 bits (15), Expect = 8.0 Identities = 15/15 (100%) Strand = Plus / Plus Query: 742 gcctttcttctctgg 756 ||||||||||||||| Sbjct: 8427 gcctttcttctctgg 8441 Database: 3g Posted date: Oct 2, 2006 12:02 AM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5747 Number of Sequences: 1077 Number of extensions: 5747 Number of successful extensions: 35 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 35 length of query: 819 length of database: 12,619,654 effective HSP length: 17 effective length of query: 802 effective length of database: 12,601,345 effective search space: 10106278690 effective search space used: 10106278690 T: 0 A: 0 X1: 11 (21.8 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 15 (30.2 bits)