# fasta34 tRNA.fasta /home/export/samba/public/tmp/bs_genome.fasta 6 FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 U00096, 85 nt vs /home/export/samba/public/tmp/bs_genome.fasta library 22547 residues in 1 sequences Altschul/Gish params: n0: 85 Lambda: 0.192 K: 0.177 H: 0.360 FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6 join: 46, opt: 31, open/ext: -12/-4, width: 16 The best scores are: opt bits E(1) AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 126 38.1 6.4e-06 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 58 19.3 1.5 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 51 17.4 2 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 46 16.0 2 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 55 init1: 55 opt: 126 Z-score: 144.1 bits: 38.1 E(): 6.4e-06 banded Smith-Waterman score: 126; 62.366% identity (62.366% similar) in 93 nt overlap (1-85:22290-22382) 10 20 U00096 GGTGGGGTTCCCGAG--CGGCCAAAGGGAG :: :: : ::: :: :::: :::::: AL0091 CATACGTGATATAGTTAGTCTTGTCGATACGGAGGAATACCCAAGTCCGGCTGAAGGGAT 22260 22270 22280 22290 22300 22310 30 40 50 60 70 80 U00096 CAGACTGTAAATCTGCC------GTCATCGACTTCGAAGGTTCGAATCCTTCCCCCACCA : : :: ::: : : : :::: : : :: ::::::::::: :: :: :: AL0091 CGGTCTTGAAAACCGACAGGGGTGTCAAAGCCCGCGGGGGTTCGAATCCCTCTTCCTCCG 22320 22330 22340 22350 22360 22370 U00096 CCA ::: AL0091 CCATATTGATTTTAATTCTAATGAAACACAAGCATATATTGGAGATTGTTTTGTCCGTTG 22380 22390 22400 22410 22420 22430 85 residues in 1 query sequences 22547 residues in 1 library sequences Scomplib [34t25] start: Mon Oct 2 19:22:48 2006 done: Mon Oct 2 19:23:41 2006 Total Scan time: 0.020 Total Display time: 0.000 Function used was FASTA [version 3.4t25 Nov 12, 2004]