TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= aroE description
         (272 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006166|AE006166 Pasteurella multocida subsp. multocida st...   243   6e-66
embl|AE006179|AE006179 Pasteurella multocida subsp. multocida st...    67   1e-12
embl|AE006081|AE006081 Pasteurella multocida subsp. multocida st...    25   4.6  

>embl|AE006166|AE006166 Pasteurella multocida subsp. multocida str.
            Pm70 section 133 of 204 of the complete genome.
          Length = 11061

 Score =  243 bits (621), Expect = 6e-66
 Identities = 130/266 (48%), Positives = 165/266 (62%), Gaps = 1/266 (0%)
 Frame = +1

Query: 1    METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANV 60
            M+ YAV+GNPIA SKSP IHQ FA Q   +  Y  +L    DF   L  FF  G KG N+
Sbjct: 1810 MDKYAVWGNPIAQSKSPQIHQIFANQTQQQMEYVAMLGDEQDFEQQLRVFFEKGAKGCNI 1989

Query: 61   TVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXX 120
            T PFKE AF  AD  +ER   A A NTL +L+DGRL GDNTDG GL+SDL+RL +     
Sbjct: 1990 TAPFKERAFQLADLHSERCLTAEACNTLKKLDDGRLYGDNTDGAGLVSDLQRLGWLKPEQ 2169

Query: 121  XXXXXXXXXXSRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE 180
                      ++GVLLPLL     + + NRT+S+AE+LA+ FA  G IQA+ +D +    
Sbjct: 2170 TILILGAGGATKGVLLPLLQAKQHIVLANRTLSKAEDLAQKFAQYGQIQAVELDNIPVQS 2349

Query: 181  FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQK-GKTPFLAWCEQRGSKRNADGLG 239
            FDLIINATSSG+ G    +   ++      YDM Y K   TPF+A C+Q G +  +DG G
Sbjct: 2350 FDLIINATSSGLHGQTVQMNPEILQNATALYDMQYAKQADTPFVALCKQLGKQNVSDGFG 2529

Query: 240  MLVAQAAHAFLLWHGVLPDVEPVIKQ 265
            MLVAQAAHAF LW GV+P+ E +++Q
Sbjct: 2530 MLVAQAAHAFHLWRGVMPEFEALLEQ 2607


>embl|AE006179|AE006179 Pasteurella multocida subsp. multocida str.
            Pm70 section 146 of 204 of the complete genome.
          Length = 11375

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 3/236 (1%)
 Frame = -1

Query: 20   HQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERA 79
            H    Q+L + + Y       +D  + +    + G +G  V++PFKE      DE++  A
Sbjct: 6710 HNYLYQKLGLNYIYKAFTT--SDIEHAVKGVRALGIRGCAVSMPFKESCMPFLDEISASA 6537

Query: 80   ALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFXXXXXXXXXXXXXXXSRGVLLPLL 139
                +VNT++  EDG L   NTD + +   +++                     V     
Sbjct: 6536 KAIESVNTIVN-EDGYLKAYNTDYIAISKLIQQYQLDKHHKVIVQGSGGMAKAVVAAFKN 6360

Query: 140  SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG---DI 196
            +    +++  R  +  + LA L+ +        ++ LEG+E  +++NAT  G+SG   + 
Sbjct: 6359 AGFHDLSVYARNATTGQYLANLYGYQ------YINHLEGNEASILVNATPMGMSGGEENT 6198

Query: 197  PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLW 252
             A P SLI      +D+     +TP + + +Q+ +K+   G  ++V QA   F L+
Sbjct: 6197 LAFPESLIEQASSIFDVVALPAETPLIQYAKQQ-NKQTISGAEVIVLQAVEQFELY 6033


>embl|AE006081|AE006081 Pasteurella multocida subsp. multocida str.
            Pm70 section 48 of 204 of the complete genome.
          Length = 11341

 Score = 25.0 bits (53), Expect = 4.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 11/36 (30%)
 Frame = +1

Query: 189  SSGISGDIPAIPS-----------SLIHPGIYCYDM 213
            S G  GD+  IP+           S +HP IYC+D+
Sbjct: 5266 SGGYFGDLYFIPTHFLLCFNHFL*SHLHPNIYCWDV 5373


  Database: pm
    Posted date:  Oct 1, 2006  1:36 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,010
Number of Sequences: 204
Number of extensions: 7313
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 21
length of query: 272
length of database: 756,529
effective HSP length: 80
effective length of query: 192
effective length of database: 740,209
effective search space: 142120128
effective search space used: 142120128
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)