msbar aroE_Ecoli.fasta     A.fasta   -point  4 -count 901 -auto
msbar aroE_Ecoli.fasta BCDEF.fasta   -point  4 -count 82 -auto
msbar    BCDEF.fasta   BCD.fasta   -point 4 -count 287 -auto
msbar      BCD.fasta     B.fasta   -point 4 -count 532 -auto
msbar      BCD.fasta    CD.fasta   -point 4 -count 205 -auto
msbar       CD.fasta     C.fasta   -point 4 -count 328 -auto
msbar       CD.fasta     D.fasta   -point 4 -count 328 -auto
msbar    BCDEF.fasta    EF.fasta   -point 4 -count 410 -auto
msbar       EF.fasta     E.fasta   -point 4 -count 369 -auto
msbar       EF.fasta     F.fasta   -point 4 -count 369 -auto

cat A.fasta > list.fasta
cat B.fasta >> list.fasta
cat C.fasta >> list.fasta
cat D.fasta >> list.fasta
cat E.fasta >> list.fasta
cat F.fasta >> list.fasta