MAST - Motif Alignment and Search Tool
MAST version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./all_precode.fasta (nucleotide)
Last updated on Thu May 21 06:45:16 2015
Database contains 2982 sequences, 101388 residues
Scores for positive and reverse complement strands are combined.
MOTIFS sds_search/meme.txt (nucleotide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 8 TACTTTTG
Random model letter frequencies (from non-redundant database):
A 0.274 C 0.225 G 0.225 T 0.274
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 76 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| ZOBGAL_RS21360
|
| 3.5
| 34
|
|
| ZOBGAL_RS20185
|
| 3.5
| 34
|
|
| ZOBGAL_RS19090
|
| 3.5
| 34
|
|
| ZOBGAL_RS18940
|
| 3.5
| 34
|
|
| ZOBGAL_RS16565
|
| 3.5
| 34
|
|
| ZOBGAL_RS12390
|
| 3.5
| 34
|
|
| ZOBGAL_RS12300
|
| 3.5
| 34
|
|
| ZOBGAL_RS12280
|
| 3.5
| 34
|
|
| ZOBGAL_RS12195
|
| 3.5
| 34
|
|
| ZOBGAL_RS11125
|
| 3.5
| 34
|
|
| ZOBGAL_RS10925
|
| 3.5
| 34
|
|
| ZOBGAL_RS10710
|
| 3.5
| 34
|
|
| ZOBGAL_RS10520
|
| 3.5
| 34
|
|
| ZOBGAL_RS10175
|
| 3.5
| 34
|
|
| ZOBGAL_RS09365
|
| 3.5
| 34
|
|
| ZOBGAL_RS08665
|
| 3.5
| 34
|
|
| ZOBGAL_RS08515
|
| 3.5
| 34
|
|
| ZOBGAL_RS08465
|
| 3.5
| 34
|
|
| ZOBGAL_RS07680
|
| 3.5
| 34
|
|
| ZOBGAL_RS07255
|
| 3.5
| 34
|
|
| ZOBGAL_RS06995
|
| 3.5
| 34
|
|
| ZOBGAL_RS06165
|
| 3.5
| 34
|
|
| ZOBGAL_RS03640
|
| 3.5
| 34
|
|
| ZOBGAL_RS03465
|
| 3.5
| 34
|
|
| ZOBGAL_RS03250
|
| 3.5
| 34
|
|
| ZOBGAL_RS01270
|
| 3.5
| 34
|
|
| ZOBGAL_RS00060
|
| 3.5
| 34
|
|
| ZOBGAL_RS22335
|
| 7.7
| 34
|
|
| ZOBGAL_RS22325
|
| 7.7
| 34
|
|
| ZOBGAL_RS21705
|
| 7.7
| 34
|
|
| ZOBGAL_RS21590
|
| 7.7
| 34
|
|
| ZOBGAL_RS21150
|
| 7.7
| 34
|
|
| ZOBGAL_RS18930
|
| 7.7
| 34
|
|
| ZOBGAL_RS18920
|
| 7.7
| 34
|
|
| ZOBGAL_RS18265
|
| 7.7
| 34
|
|
| ZOBGAL_RS17880
|
| 7.7
| 34
|
|
| ZOBGAL_RS17470
|
| 7.7
| 34
|
|
| ZOBGAL_RS16295
|
| 7.7
| 34
|
|
| ZOBGAL_RS14805
|
| 7.7
| 34
|
|
| ZOBGAL_RS14765
|
| 7.7
| 34
|
|
| ZOBGAL_RS14060
|
| 7.7
| 34
|
|
| ZOBGAL_RS13745
|
| 7.7
| 34
|
|
| ZOBGAL_RS13730
|
| 7.7
| 34
|
|
| ZOBGAL_RS13515
|
| 7.7
| 34
|
|
| ZOBGAL_RS13450
|
| 7.7
| 34
|
|
| ZOBGAL_RS13355
|
| 7.7
| 34
|
|
| ZOBGAL_RS13240
|
| 7.7
| 34
|
|
| ZOBGAL_RS11705
|
| 7.7
| 34
|
|
| ZOBGAL_RS11385
|
| 7.7
| 34
|
|
| ZOBGAL_RS11235
|
| 7.7
| 34
|
|
| ZOBGAL_RS11005
|
| 7.7
| 34
|
|
| ZOBGAL_RS10970
|
| 7.7
| 34
|
|
| ZOBGAL_RS09925
|
| 7.7
| 34
|
|
| ZOBGAL_RS09865
|
| 7.7
| 34
|
|
| ZOBGAL_RS09230
|
| 7.7
| 34
|
|
| ZOBGAL_RS09215
|
| 7.7
| 34
|
|
| ZOBGAL_RS08305
|
| 7.7
| 34
|
|
| ZOBGAL_RS07875
|
| 7.7
| 34
|
|
| ZOBGAL_RS07290
|
| 7.7
| 34
|
|
| ZOBGAL_RS05580
|
| 7.7
| 34
|
|
| ZOBGAL_RS05510
|
| 7.7
| 34
|
|
| ZOBGAL_RS04620
|
| 7.7
| 34
|
|
| ZOBGAL_RS04305
|
| 7.7
| 34
|
|
| ZOBGAL_RS04170
|
| 7.7
| 34
|
|
| ZOBGAL_RS04020
|
| 7.7
| 34
|
|
| ZOBGAL_RS03590
|
| 7.7
| 34
|
|
| ZOBGAL_RS03550
|
| 7.7
| 34
|
|
| ZOBGAL_RS03210
|
| 7.7
| 34
|
|
| ZOBGAL_RS02975
|
| 7.7
| 34
|
|
| ZOBGAL_RS02930
|
| 7.7
| 34
|
|
| ZOBGAL_RS02705
|
| 7.7
| 34
|
|
| ZOBGAL_RS02315
|
| 7.7
| 34
|
|
| ZOBGAL_RS01075
|
| 7.7
| 34
|
|
| ZOBGAL_RS00415
|
| 7.7
| 34
|
|
| ZOBGAL_RS00050
|
| 7.7
| 34
|
|
| ZOBGAL_RS00005
|
| 7.7
| 34
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
A minus sign indicates that the occurrence is on the
reverse complement strand.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| ZOBGAL_RS21360
| 3.5
|
|
|
| ZOBGAL_RS20185
| 3.5
|
|
|
| ZOBGAL_RS19090
| 3.5
|
|
|
| ZOBGAL_RS18940
| 3.5
|
|
|
| ZOBGAL_RS16565
| 3.5
|
|
|
| ZOBGAL_RS12390
| 3.5
|
|
|
| ZOBGAL_RS12300
| 3.5
|
|
|
| ZOBGAL_RS12280
| 3.5
|
|
|
| ZOBGAL_RS12195
| 3.5
|
|
|
| ZOBGAL_RS11125
| 3.5
|
|
|
| ZOBGAL_RS10925
| 3.5
|
|
|
| ZOBGAL_RS10710
| 3.5
|
|
|
| ZOBGAL_RS10520
| 3.5
|
|
|
| ZOBGAL_RS10175
| 3.5
|
|
|
| ZOBGAL_RS09365
| 3.5
|
|
|
| ZOBGAL_RS08665
| 3.5
|
|
|
| ZOBGAL_RS08515
| 3.5
|
|
|
| ZOBGAL_RS08465
| 3.5
|
|
|
| ZOBGAL_RS07680
| 3.5
|
|
|
| ZOBGAL_RS07255
| 3.5
|
|
|
| ZOBGAL_RS06995
| 3.5
|
|
|
| ZOBGAL_RS06165
| 3.5
|
|
|
| ZOBGAL_RS03640
| 3.5
|
|
|
| ZOBGAL_RS03465
| 3.5
|
|
|
| ZOBGAL_RS03250
| 3.5
|
|
|
| ZOBGAL_RS01270
| 3.5
|
|
|
| ZOBGAL_RS00060
| 3.5
|
|
|
| ZOBGAL_RS22335
| 7.7
|
|
|
| ZOBGAL_RS22325
| 7.7
|
|
|
| ZOBGAL_RS21705
| 7.7
|
|
|
| ZOBGAL_RS21590
| 7.7
|
|
|
| ZOBGAL_RS21150
| 7.7
|
|
|
| ZOBGAL_RS18930
| 7.7
|
|
|
| ZOBGAL_RS18920
| 7.7
|
|
|
| ZOBGAL_RS18265
| 7.7
|
|
|
| ZOBGAL_RS17880
| 7.7
|
|
|
| ZOBGAL_RS17470
| 7.7
|
|
|
| ZOBGAL_RS16295
| 7.7
|
|
|
| ZOBGAL_RS14805
| 7.7
|
|
|
| ZOBGAL_RS14765
| 7.7
|
|
|
| ZOBGAL_RS14060
| 7.7
|
|
|
| ZOBGAL_RS13745
| 7.7
|
|
|
| ZOBGAL_RS13730
| 7.7
|
|
|
| ZOBGAL_RS13515
| 7.7
|
|
|
| ZOBGAL_RS13450
| 7.7
|
|
|
| ZOBGAL_RS13355
| 7.7
|
|
|
| ZOBGAL_RS13240
| 7.7
|
|
|
| ZOBGAL_RS11705
| 7.7
|
|
|
| ZOBGAL_RS11385
| 7.7
|
|
|
| ZOBGAL_RS11235
| 7.7
|
|
|
| ZOBGAL_RS11005
| 7.7
|
|
|
| ZOBGAL_RS10970
| 7.7
|
|
|
| ZOBGAL_RS09925
| 7.7
|
|
|
| ZOBGAL_RS09865
| 7.7
|
|
|
| ZOBGAL_RS09230
| 7.7
|
|
|
| ZOBGAL_RS09215
| 7.7
|
|
|
| ZOBGAL_RS08305
| 7.7
|
|
|
| ZOBGAL_RS07875
| 7.7
|
|
|
| ZOBGAL_RS07290
| 7.7
|
|
|
| ZOBGAL_RS05580
| 7.7
|
|
|
| ZOBGAL_RS05510
| 7.7
|
|
|
| ZOBGAL_RS04620
| 7.7
|
|
|
| ZOBGAL_RS04305
| 7.7
|
|
|
| ZOBGAL_RS04170
| 7.7
|
|
|
| ZOBGAL_RS04020
| 7.7
|
|
|
| ZOBGAL_RS03590
| 7.7
|
|
|
| ZOBGAL_RS03550
| 7.7
|
|
|
| ZOBGAL_RS03210
| 7.7
|
|
|
| ZOBGAL_RS02975
| 7.7
|
|
|
| ZOBGAL_RS02930
| 7.7
|
|
|
| ZOBGAL_RS02705
| 7.7
|
|
|
| ZOBGAL_RS02315
| 7.7
|
|
|
| ZOBGAL_RS01075
| 7.7
|
|
|
| ZOBGAL_RS00415
| 7.7
|
|
|
| ZOBGAL_RS00050
| 7.7
|
|
|
| ZOBGAL_RS00005
| 7.7
|
|
| SCALE
|
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence (a minus sign indicates that
the occurrence is on the reverse complement strand),
- the position p-value of the occurrence,
- the best possible match to the motif (or its reverse complement), and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
ZOBGAL_RS21360
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 10-[+1]-16
[+1]
2.2e-05
TACTTTTG
++++++++
1 TAGGGGCAAGTACTTTTGACGTAAAAGATCGTTG
ZOBGAL_RS20185
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: [+1]-26
[+1]
2.2e-05
TACTTTTG
++++++++
1 TACTTTTGGCCAAAACAAAACCTAAATGGAAGCA
ZOBGAL_RS19090
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 2-[+1]-24
[+1]
2.2e-05
TACTTTTG
++++++++
1 CTTACTTTTGCCCTTAAATACAAAGTAAACCTAA
ZOBGAL_RS18940
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 22-[+1]-4
[+1]
2.2e-05
TACTTTTG
++++++++
1 TTTTATACCCAAATTTTAAAGTTACTTTTGCAGT
ZOBGAL_RS16565
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 15-[+1]-11
[+1]
2.2e-05
TACTTTTG
++++++++
1 CTTGGATCTCAAGCTTACTTTTGGGGTATTCTAT
ZOBGAL_RS12390
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 20-[+1]-6
[+1]
2.2e-05
TACTTTTG
++++++++
1 GGGGATCGCTCTAAAACCGGTACTTTTGTACCAT
ZOBGAL_RS12300
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 22-[+1]-4
[+1]
2.2e-05
TACTTTTG
++++++++
1 TGGAATGTTTGTTCCAAAACGCTACTTTTGCCCT
ZOBGAL_RS12280
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 3-[+1]-23
[+1]
2.2e-05
TACTTTTG
++++++++
1 ATGTACTTTTGAGAGAGTTTAAAAACGCCATAGA
ZOBGAL_RS12195
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 8-[+1]-18
[+1]
2.2e-05
TACTTTTG
++++++++
1 AAAACCGTTACTTTTGCGCTTTTTCGTTTCGCCG
ZOBGAL_RS11125
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 4-[+1]-22
[+1]
2.2e-05
TACTTTTG
++++++++
1 TTCTTACTTTTGGATCCTAACCCAATAACTACGT
ZOBGAL_RS10925
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 24-[-1]-2
[-1]
2.2e-05
CAAAAGTA
++++++++
1 TCAAATGAAGTATAACACCCAAAACAAAAGTAAA
ZOBGAL_RS10710
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 5-[+1]-21
[+1]
2.2e-05
TACTTTTG
++++++++
1 TTGGATACTTTTGAGACAAGAAAAAAAGAAACAA
ZOBGAL_RS10520
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 17-[-1]-9
[-1]
2.2e-05
CAAAAGTA
++++++++
1 GAGATAACATACCAAACCAAAAGTAAATTTACTC
ZOBGAL_RS10175
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 13-[+1]-13
[+1]
2.2e-05
TACTTTTG
++++++++
1 ATCTGTTTTTGAGTACTTTTGCAAAAACTCATGA
ZOBGAL_RS09365
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 9-[+1]-17
[+1]
2.2e-05
TACTTTTG
++++++++
1 GGTATAATTTACTTTTGTTTAAAATATGTTATAA
ZOBGAL_RS08665
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: [+1]-26
[+1]
2.2e-05
TACTTTTG
++++++++
1 TACTTTTGTATAACCATTAACTAAATATTTCAAA
ZOBGAL_RS08515
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 21-[+1]-5
[+1]
2.2e-05
TACTTTTG
++++++++
1 GATTATACCTGATAAAATTGTTACTTTTGATTTT
ZOBGAL_RS08465
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 8-[+1]-18
[+1]
2.2e-05
TACTTTTG
++++++++
1 TAAATAGGTACTTTTGGATATAAATGCAGCTCTA
ZOBGAL_RS07680
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 1-[+1]-25
[+1]
2.2e-05
TACTTTTG
++++++++
1 ATACTTTTGCTGTTTATCAATCAAACCTCTTCTT
ZOBGAL_RS07255
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 24-[+1]-2
[+1]
2.2e-05
TACTTTTG
++++++++
1 CCCGATGACGAGTTGTGCAACGGTTACTTTTGTT
ZOBGAL_RS06995
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 10-[+1]-16
[+1]
2.2e-05
TACTTTTG
++++++++
1 ATCAAAACACTACTTTTGTGTAAAGACTACCCTT
ZOBGAL_RS06165
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 9-[+1]-17
[+1]
2.2e-05
TACTTTTG
++++++++
1 GGATATCGCTACTTTTGCCAAAGTATTTTCAATT
ZOBGAL_RS03640
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: [+1]-26
[+1]
2.2e-05
TACTTTTG
++++++++
1 TACTTTTGTACAAACCCTTTTGAACAGACATAAA
ZOBGAL_RS03465
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 5-[+1]-21
[+1]
2.2e-05
TACTTTTG
++++++++
1 CACAGTACTTTTGAAAATCTAATTTTCAGAACCC
ZOBGAL_RS03250
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 13-[+1]-13
[+1]
2.2e-05
TACTTTTG
++++++++
1 AATCTATATCTTTTACTTTTGGAAGACCTATAAC
ZOBGAL_RS01270
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: 23-[-1]-3
[-1]
2.2e-05
CAAAAGTA
++++++++
1 AAGCCGTAAGGGGTTACAAAGGGCAAAAGTAAAT
ZOBGAL_RS00060
LENGTH = 34 COMBINED P-VALUE = 1.16e-03 E-VALUE = 3.5
DIAGRAM: [+1]-26
[+1]
2.2e-05
TACTTTTG
++++++++
1 TACTTTTGCCCACTAATTCATTTCAAAAATCAAA
ZOBGAL_RS22335
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 11-[+1]-15
[+1]
4.8e-05
TACTTTTG
++++++++
1 GAAACTATCCTTATTTTTGAACAAATTGAAATTT
ZOBGAL_RS22325
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 22-[+1]-4
[+1]
4.8e-05
TACTTTTG
++++++++
1 GCATTATTTTAGGGAACTTCACTATTTTTGTGCC
ZOBGAL_RS21705
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 6-[+1]-20
[+1]
4.8e-05
TACTTTTG
++++++++
1 AATACGTATTTTTGCACCCAGTGGAAAAAAAGTA
ZOBGAL_RS21590
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 7-[+1]-19
[+1]
4.8e-05
TACTTTTG
++++++++
1 CCTACCTTATTTTTGATACAGTAAATTAGAGTTT
ZOBGAL_RS21150
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 7-[+1]-19
[+1]
4.8e-05
TACTTTTG
++++++++
1 AGTTTGTTATTTTTGTAGAAACTCGATTTTCTTA
ZOBGAL_RS18930
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 20-[+1]-6
[+1]
4.8e-05
TACTTTTG
++++++++
1 TTTAAGAAATACAACCGTTGTATTTTTGTGGCTC
ZOBGAL_RS18920
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 20-[-1]-6
[-1]
4.8e-05
CAAAAGTA
++++++++
1 GGTGTAATGCTTAATTTTGACAAAAATAGATGAT
ZOBGAL_RS18265
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 20-[-1]-6
[-1]
4.8e-05
CAAAAGTA
++++++++
1 TCAAGCGGAAGGGTAAGCACCAAAAATAAGAGGC
ZOBGAL_RS17880
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 11-[+1]-15
[+1]
4.8e-05
TACTTTTG
++++++++
1 CCGAGTTAACTTATTTTTGTTTCCAGTGGATAAT
ZOBGAL_RS17470
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 22-[+1]-4
[+1]
4.8e-05
TACTTTTG
++++++++
1 TCGGCTTTCATGGGGATATACCTATTTTTGTACC
ZOBGAL_RS16295
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 19-[-1]-7
[-1]
4.8e-05
CAAAAGTA
++++++++
1 TTGAACGCAACTTTCTAAACAAAAATAGACAAAC
ZOBGAL_RS14805
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 9-[+1]-17
[+1]
4.8e-05
TACTTTTG
++++++++
1 AATTACCATTATTTTTGTGGATACAAAACAAATT
ZOBGAL_RS14765
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 6-[+1]-20
[+1]
4.8e-05
TACTTTTG
++++++++
1 ATACTGTATTTTTGCGGCAACTTTAGAATAAGAC
ZOBGAL_RS14060
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 23-[+1]-3
[+1]
4.8e-05
TACTTTTG
++++++++
1 CCACTGCCACGGGTAGGCCTTTATATTTTTGGGC
ZOBGAL_RS13745
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 8-[+1]-18
[+1]
4.8e-05
TACTTTTG
++++++++
1 TTATAGGTTATTTTTGCAAAAAATAAATGAGAGG
ZOBGAL_RS13730
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 5-[+1]-8-[+1]-5
[+1] [+1]
8.7e-05 4.8e-05
TACTTTTG TACTTTTG
++++++++ ++++++++
1 AGATATATCTTTGTAGTTTACTATTTTTGAGCTT
ZOBGAL_RS13515
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 6-[+1]-20
[+1]
4.8e-05
TACTTTTG
++++++++
1 AGTTTGTATTTTTGCGCAAATTCTATATACCCTC
ZOBGAL_RS13450
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 20-[-1]-6
[-1]
4.8e-05
CAAAAGTA
++++++++
1 CATATTTTTATTGGTACGAACAAAAATAGAAATA
ZOBGAL_RS13355
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 19-[-1]-7
[-1]
4.8e-05
CAAAAGTA
++++++++
1 TAGATATTCGCCATAGAATCAAAAATACCTTCAG
ZOBGAL_RS13240
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 10-[+1]-16
[+1]
4.8e-05
TACTTTTG
++++++++
1 GTGAATACCTTATTTTTGCCAAAAAGCCGTAATA
ZOBGAL_RS11705
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 10-[+1]-16
[+1]
4.8e-05
TACTTTTG
++++++++
1 CCATATTTCTTATTTTTGATTAAACTTCTTGAAC
ZOBGAL_RS11385
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 4-[+1]-22
[+1]
4.8e-05
TACTTTTG
++++++++
1 TTGCTATTTTTGCACCCACTAAAAAATAAAAATA
ZOBGAL_RS11235
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 7-[-1]-19
[-1]
4.8e-05
CAAAAGTA
++++++++
1 AGCCGGACAAAAATAACCCCAAAACCACCCGAAC
ZOBGAL_RS11005
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 10-[-1]-4-[+1]-4
[-1] [+1]
8.7e-05 4.8e-05
CAAAAGTA TACTTTTG
++++++++ ++++++++
1 TTCTTTTTGTCAAAGATAAGGCTATTTTTGCAGC
ZOBGAL_RS10970
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 2-[+1]-24
[+1]
4.8e-05
TACTTTTG
++++++++
1 CGTATTTTTGCTGTGATCTATTTAATTCATCACG
ZOBGAL_RS09925
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 2-[+1]-24
[+1]
4.8e-05
TACTTTTG
++++++++
1 GTTATTTTTGCTCATCAATCAATCTTATGAACCC
ZOBGAL_RS09865
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 16-[-1]-10
[-1]
4.8e-05
CAAAAGTA
++++++++
1 GACTCTGAAGGAAACACAAAAATAGTGTATACAA
ZOBGAL_RS09230
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 9-[+1]-17
[+1]
4.8e-05
TACTTTTG
++++++++
1 ATAAAAACGTATTTTTGTGTAATTCAAATTTTTT
ZOBGAL_RS09215
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 11-[+1]-15
[+1]
4.8e-05
TACTTTTG
++++++++
1 TCAAATGGATGTATTTTTGGGGAAAATTTGTTGA
ZOBGAL_RS08305
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 11-[+1]-15
[+1]
4.8e-05
TACTTTTG
++++++++
1 ACTTCAAAACGTATTTTTGCGCAAACCTTAGAAC
ZOBGAL_RS07875
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 22-[+1]-4
[+1]
4.8e-05
TACTTTTG
++++++++
1 CCTAATTTACGCTATTTCTCCGTATTTTTGCGGT
ZOBGAL_RS07290
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 2-[+1]-24
[+1]
4.8e-05
TACTTTTG
++++++++
1 CGTATTTTTGATATTTACAAAAAACATAAAAATT
ZOBGAL_RS05580
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 8-[+1]-18
[+1]
4.8e-05
TACTTTTG
++++++++
1 GTAAAACGTATTTTTGCGCTATAAAGTATTCCGC
ZOBGAL_RS05510
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 13-[+1]-13
[+1]
4.8e-05
TACTTTTG
++++++++
1 GTTTCCAAAAGCTTATTTTTGCACAAAAAATAGC
ZOBGAL_RS04620
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 11-[-1]-15
[-1]
4.8e-05
CAAAAGTA
++++++++
1 CTAAAACGTCACAAAAATAGGATAAAATAGGTAC
ZOBGAL_RS04305
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 9-[+1]-17
[+1]
4.8e-05
TACTTTTG
++++++++
1 CAGAAACGCTATTTTTGAAGAAATACCATAATTT
ZOBGAL_RS04170
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 2-[+1]-24
[+1]
4.8e-05
TACTTTTG
++++++++
1 GTTATTTTTGTTAGGATATACCTATTTTCATCAC
ZOBGAL_RS04020
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 24-[-1]-2
[-1]
4.8e-05
CAAAAGTA
++++++++
1 GGCATTGTCAAGTTGCCCATTTAACAAAAATAAC
ZOBGAL_RS03590
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 20-[+1]-6
[+1]
4.8e-05
TACTTTTG
++++++++
1 AAGTTTAAATGAAATCAATGTATTTTTGACCTCT
ZOBGAL_RS03550
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 18-[-1]-8
[-1]
4.8e-05
CAAAAGTA
++++++++
1 CGTTTCTACGATATTTATCAAAAATACTATTTAT
ZOBGAL_RS03210
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 22-[+1]-4
[+1]
4.8e-05
TACTTTTG
++++++++
1 TTAAAACTTGGTTGTTTTTGCTTATTTTTGGTAT
ZOBGAL_RS02975
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 12-[+1]-14
[+1]
4.8e-05
TACTTTTG
++++++++
1 TATAATTTAATGTATTTTTGCACAAATTTTCTTC
ZOBGAL_RS02930
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 15-[+1]-11
[+1]
4.8e-05
TACTTTTG
++++++++
1 GATAAAAAAGAGTAGTATTTTTGTATGAAAATAA
ZOBGAL_RS02705
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 16-[-1]-10
[-1]
4.8e-05
CAAAAGTA
++++++++
1 CTGTTTTTTGTTTTCTCAAAAATAACCCCTAAAA
ZOBGAL_RS02315
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 15-[+1]-11
[+1]
4.8e-05
TACTTTTG
++++++++
1 AAAAGCGTGTCTTTCTATTTTTGACAAAAGAGGG
ZOBGAL_RS01075
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 12-[-1]-14
[-1]
4.8e-05
CAAAAGTA
++++++++
1 CGATATTGAATTCAAAAATATATGAATCCTCCGT
ZOBGAL_RS00415
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 4-[+1]-22
[+1]
4.8e-05
TACTTTTG
++++++++
1 ATTGTATTTTTGGTCTGATTTATAGAAACTGTGA
ZOBGAL_RS00050
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 10-[-1]-16
[-1]
4.8e-05
CAAAAGTA
++++++++
1 AGTTTTACACCAAAAATATAACCCAACCCAACAG
ZOBGAL_RS00005
LENGTH = 34 COMBINED P-VALUE = 2.58e-03 E-VALUE = 7.7
DIAGRAM: 12-[-1]-14
[-1]
4.8e-05
CAAAAGTA
++++++++
1 ATCACTAACCAACAAAAATAAGATAAACTTTAAA
Debugging Information
CPU: kodomo.fbb.msu.ru
Time 0.012000 secs.
mast sds_search/meme.txt -d ./all_precode.fasta -ev 10.000000 -mt 0.000100
Button Help
Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information