RID: Y27NSAEP014 Job Title:ENV_HV192 O12164 Transmembrane protein Program: BLASTP Query: ENV_HV192 O12164 Transmembrane protein gp41 residues 505...856 ID: lcl|Query_1956245(amino acid) Length: 352 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:C_92... NA 388812 709 709 100% 0.0 100.00 856 O12164.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:C_ET... NA 388796 607 607 99% 0.0 87.71 851 Q75008.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:G_92... NA 388825 581 581 100% 0.0 81.48 849 O41803.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:H_VI991 NA 388888 561 561 100% 0.0 80.63 859 Q9Q714.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_AR... NA 11685 555 555 100% 0.0 78.98 855 P03378.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11692 548 548 100% 0.0 77.21 856 P05881.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 31678 547 547 100% 0.0 79.26 856 P31872.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11678 547 547 100% 0.0 79.20 856 P03375.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11691 546 546 100% 0.0 80.06 847 P19550.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11686 546 546 100% 0.0 79.49 861 P03377.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:H_90... NA 388826 545 545 100% 0.0 79.77 845 O70902.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11684 545 545 100% 0.0 78.63 851 P04582.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_HXB2R NA 11706 545 545 100% 0.0 78.92 856 P04578.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F1_V... NA 388813 544 544 100% 0.0 78.35 832 Q9QSQ7.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 362651 543 543 100% 0.0 76.92 843 P35961.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:K_97... NA 388907 543 543 100% 0.0 78.06 851 Q9QBZ8.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F2_M... NA 388823 543 543 100% 0.0 77.78 850 Q9QBZ0.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11704 542 542 100% 0.0 78.63 853 P19551.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11694 542 542 100% 0.0 76.35 867 P12489.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11690 542 542 100% 0.0 79.55 852 P19549.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F2_M... NA 388815 541 541 100% 0.0 78.63 843 Q9QBZ4.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:J_SE... NA 388905 541 541 100% 0.0 79.77 848 Q9WC60.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 82834 540 540 100% 0.0 78.63 856 Q70626.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:J_SE... NA 388904 539 539 100% 0.0 79.77 850 Q9WC69.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11707 539 539 100% 0.0 78.06 856 P04624.3 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:F1_9... NA 388814 538 538 100% 0.0 78.06 846 O89292.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11699 537 537 100% 0.0 78.41 855 P20888.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11688 536 536 100% 0.0 78.63 848 P20871.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11705 535 535 100% 0.0 78.41 847 P05880.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:K_96... NA 388906 533 533 100% 0.0 77.78 842 Q9QBY2.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11708 532 532 100% 0.0 78.35 855 P04580.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11683 531 531 100% 0.0 78.92 853 P12487.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11681 530 530 100% 0.0 77.49 863 P05882.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 36375 528 528 100% 0.0 76.64 861 P31819.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11695 528 528 100% 0.0 77.49 846 P18799.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11689 527 527 100% 0.0 77.21 853 P04581.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz MB66 NA 388911 527 527 100% 0.0 75.50 880 Q1A261.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11701 525 525 100% 1e-180 77.84 865 P04579.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11693 524 524 100% 3e-180 77.56 852 P12488.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11697 520 520 100% 7e-179 77.56 859 P04583.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11702 518 518 100% 4e-178 76.20 856 P05878.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_MN NA 11696 518 518 99% 5e-178 77.65 856 P05877.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11687 511 511 100% 7e-175 77.56 868 P05879.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 M:B_89.6 NA 401671 506 506 100% 1e-173 76.92 853 Q73372.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz EK505 NA 388912 449 449 100% 2e-151 65.91 835 Q1A243.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 N_YBF30 NA 388818 446 446 100% 3e-150 65.62 842 O91086.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz GAB1 NA 402771 427 427 100% 9e-143 65.34 854 P17281.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 N_YBF106 NA 388819 425 425 100% 5e-142 65.16 836 Q9IDV2.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 O_MVP5180 NA 388816 338 338 100% 6e-108 51.70 876 Q79670.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... SIVcpz TAN1 NA 388910 325 325 100% 3e-103 49.34 871 Q8AIH5.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-1 O_ANT70 NA 327105 302 302 100% 2e-94 50.43 863 Q77377.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11730 204 204 98% 4e-58 41.21 877 P27977.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11731 204 204 98% 7e-58 40.29 865 P05886.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 31684 202 202 98% 2e-57 38.11 854 Q02837.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-2 B_UC1 NA 388822 201 201 98% 6e-57 37.33 857 Q76638.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11737 195 195 98% 1e-54 36.59 885 P12492.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11713 193 193 98% 4e-54 40.06 851 P17755.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11738 193 193 98% 5e-54 36.31 889 P19503.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... HIV-2 B_EHO NA 388821 192 192 98% 7e-54 37.85 852 Q89607.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11720 190 190 98% 6e-53 37.29 858 P04577.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11714 189 189 98% 9e-53 39.15 860 P18094.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11727 187 187 65% 5e-52 46.72 768 P27757.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11733 184 184 98% 6e-51 37.26 882 P05885.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11716 184 184 73% 7e-51 41.51 859 P15831.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11719 184 184 98% 1e-50 36.54 856 P05883.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11734 183 183 98% 2e-50 36.97 881 P08810.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11715 182 182 98% 3e-50 36.93 859 P24105.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 73484 179 179 97% 5e-49 36.24 857 Q74126.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11735 178 178 98% 9e-49 37.53 881 P05884.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11721 176 176 98% 5e-48 37.74 859 P20872.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11717 171 171 56% 2e-46 48.73 738 P18040.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11736 170 170 98% 6e-46 35.89 881 P11267.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 11718 165 165 98% 5e-44 36.97 846 P12449.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Human immuno... NA 31681 160 160 56% 9e-43 47.72 712 P32536.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Simian immun... NA 11732 150 150 62% 4e-39 38.39 821 P22380.1 RecName: Full=Envelope glycoprotein; AltName: Full=Env... Caprine arth... NA 11662 63.5 63.5 57% 9e-10 27.83 942 P31627.2 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Ovine lentiv... NA 11664 46.2 46.2 58% 3e-04 25.00 990 P16899.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Visna lentiv... NA 11743 43.1 43.1 57% 0.004 24.52 989 P23422.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Visna/maedi ... NA 36374 42.4 42.4 57% 0.005 24.04 983 P35954.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Visna lentiv... NA 11744 42.4 42.4 57% 0.006 24.04 991 P23423.1 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env... Visna lentiv... NA 11742 42.4 42.4 57% 0.006 24.15 982 P03379.1 Alignments: >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:C_92BR025] Sequence ID: O12164.1 Length: 856 Range 1: 505 to 856 Score:709 bits(1831), Expect:0.0, Method:Compositional matrix adjust., Identities:352/352(100%), Positives:352/352(100%), Gaps:0/352(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW Sbjct 505 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 564 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW Sbjct 565 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 624 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG Sbjct 625 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 684 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG Sbjct 685 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 744 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS Sbjct 745 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 804 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ 352 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ Sbjct 805 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ 856 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:C_ETH2220] Sequence ID: Q75008.1 Length: 851 Range 1: 502 to 851 Score:607 bits(1564), Expect:0.0, Method:Compositional matrix adjust., Identities:307/350(88%), Positives:327/350(93%), Gaps:0/350(0%) Query 3 GIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGI 62 +GA+FLGFLGAAGSTMGAASITLTVQ RQLLSGIVQQQSNLL+AIEAQQHMLQLTVWGI Sbjct 502 ALGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHMLQLTVWGI 561 Query 63 KQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDR 122 KQLQTRVLAIER+LRDQQLLGIWGCSGKLICTTAVPWNSSWSN+SQE+IW+NMTWMQWDR Sbjct 562 KQLQTRVLAIERHLRDQQLLGIWGCSGKLICTTAVPWNSSWSNKSQEEIWDNMTWMQWDR 621 Query 123 EISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLI 182 EISNYT+ IY LLE SQNQQ+KNE+DLLALDKW+NLW WF ITNWLWYIKIFI IVGG+I Sbjct 622 EISNYTDIIYNLLEVSQNQQDKNEKDLLALDKWENLWNWFNITNWLWYIKIFIMIVGGVI 681 Query 183 GLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSGFL 242 GLRIIFAVLSIVNRVRQGYSPLSFQTL P+PRGPDRLGGIEEEGGEQ RDRSIRLV+GFL Sbjct 682 GLRIIFAVLSIVNRVRQGYSPLSFQTLIPHPRGPDRLGGIEEEGGEQGRDRSIRLVNGFL 741 Query 243 ALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWSLE 302 A+ WDDLRSLCLFSYHRLRDLILIAAR VELLGRSSL+G+QRGWE LKYLG LVQYW LE Sbjct 742 AIFWDDLRSLCLFSYHRLRDLILIAARTVELLGRSSLKGLQRGWETLKYLGSLVQYWGLE 801 Query 303 LKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ 352 LKKSAI+L +T AI V EGTDR IE+IQ IWRA CNIPRRIRQG EAALQ Sbjct 802 LKKSAINLLNTTAIVVGEGTDRFIELIQRIWRAFCNIPRRIRQGLEAALQ 851 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:G_92NG083] Sequence ID: O41803.1 Length: 849 Range 1: 498 to 848 Score:581 bits(1497), Expect:0.0, Method:Compositional matrix adjust., Identities:286/351(81%), Positives:313/351(89%), Gaps:0/351(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GAVFLGFLGAAGSTMGAASITLT QVRQLLSGIVQQQSNLLRAIEAQQH+LQLTVW Sbjct 498 AVGLGAVFLGFLGAAGSTMGAASITLTAQVRQLLSGIVQQQSNLLRAIEAQQHLLQLTVW 557 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ+RVLAIERYL+DQQLLGIWGCSGKLICTT VPWN+SWSN+S +IW+NMTW++W Sbjct 558 GIKQLQSRVLAIERYLKDQQLLGIWGCSGKLICTTNVPWNTSWSNKSYNEIWDNMTWLEW 617 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT IY L+E+SQNQQEKNEQDLLALDKW +LW WF I+NWLWYI+IFI IVGG Sbjct 618 EREIHNYTQHIYSLIEESQNQQEKNEQDLLALDKWASLWNWFDISNWLWYIRIFIMIVGG 677 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLSIVNRVRQGYSPLSFQTLT + R PDRLG EE GGEQDRDRS RLVSG Sbjct 678 LIGLRIVFAVLSIVNRVRQGYSPLSFQTLTHHQREPDRLGKTEEGGGEQDRDRSTRLVSG 737 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLRSLCLFSYHRLRDL+LIAAR VELLGRSSL+G++ GWE LKYL L+ YW Sbjct 738 FLALAWDDLRSLCLFSYHRLRDLVLIAARTVELLGRSSLKGLRLGWEGLKYLWNLLLYWG 797 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAI+L DTIAIA A GTDR+IEV Q +RAI N+P RIRQG E AL Sbjct 798 RELKNSAINLLDTIAIATANGTDRVIEVAQRAYRAILNVPTRIRQGLERAL 848 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:H_VI991] Sequence ID: Q9Q714.1 Length: 859 Range 1: 515 to 858 Score:561 bits(1445), Expect:0.0, Method:Compositional matrix adjust., Identities:283/351(81%), Positives:308/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA FLGFLGAAGSTMGAASITLTVQ RQLLSGIVQQQSNLLRAI+AQQHMLQLTVW Sbjct 515 AVGMGAFFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIQAQQHMLQLTVW 574 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTT VPWNSSWSN+S ++IW+NMTWM+W Sbjct 575 GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSLDEIWDNMTWMEW 634 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 D++I+NYT+ IYRLLE SQNQQEKNEQDLLALDKW NLW WF ITNWLWYI+IFI IVGG Sbjct 635 DKQINNYTDEIYRLLEVSQNQQEKNEQDLLALDKWANLWNWFSITNWLWYIRIFIMIVGG 694 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 +IGLRI+FAVLSIVNRVRQGYSPLS QTL PN RGPDR IEEEGGEQDRDRSIRLV+G Sbjct 695 IIGLRIVFAVLSIVNRVRQGYSPLSLQTLIPNQRGPDRPREIEEEGGEQDRDRSIRLVNG 754 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FL L W+DLR+LCLFSY RLRDL+ I AR VELLGR RGWE LK LG L+ YW Sbjct 755 FLPLVWEDLRNLCLFSYRRLRDLLSIVARTVELLGR-------RGWEALKLLGNLLLYWG 807 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL +T AIAVAEGTDRIIE++Q WRAI +IPRRIRQGFE AL Sbjct 808 QELKNSAISLLNTTAIAVAEGTDRIIELVQRAWRAILHIPRRIRQGFERAL 858 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_ARV2/SF2] Sequence ID: P03378.1 Length: 855 Range 1: 510 to 854 Score:555 bits(1430), Expect:0.0, Method:Compositional matrix adjust., Identities:278/352(79%), Positives:303/352(86%), Gaps:8/352(2%) Query 1 AVGI-GAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVGI GA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTV Sbjct 510 AVGIVGAMFLGFLGAAGSTMGAVSLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV 569 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTTAVPWN+SWSN+S EDIW+NMTWMQ Sbjct 570 WGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEDIWDNMTWMQ 629 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYTNTIY LLE+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVG Sbjct 630 WEREIDNYTNTIYTLLEESQNQQEKNEQELLELDKWASLWNWFSITNWLWYIKIFIMIVG 689 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GL+GLRI+FAVLSIVNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRS+RLV Sbjct 690 GLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPVPRGPDRPDGIEEEGGERDRDRSVRLVD 749 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLAL W+DLRSLCLFSY RLRDL+LIAAR VE+LG RGWE LKY L+QYW Sbjct 750 GFLALIWEDLRSLCLFSYRRLRDLLLIAARTVEILG-------HRGWEALKYWWSLLQYW 802 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+S + AIAV EGTDR+IEV Q +RAI +I RRIRQG E L Sbjct 803 IQELKNSAVSWLNATAIAVTEGTDRVIEVAQRAYRAILHIHRRIRQGLERLL 854 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (ZAIRE HZ321 ISOLATE)] Sequence ID: P05881.1 Length: 856 Range 1: 512 to 855 Score:548 bits(1411), Expect:0.0, Method:Compositional matrix adjust., Identities:271/351(77%), Positives:300/351(85%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GA FLGFLGAAGSTMGAASITLTVQ R+LLSGIVQQQ+NLLRAIEAQQH+L+LTVW Sbjct 512 AIGMGAFFLGFLGAAGSTMGAASITLTVQARRLLSGIVQQQNNLLRAIEAQQHLLKLTVW 571 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGK+IC T VPWNSSWSN+SQ DIW+ MTW++W Sbjct 572 GIKQLQARILAVERYLKDQQLLGIWGCSGKIICPTNVPWNSSWSNKSQSDIWDKMTWLEW 631 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 D+E+SNYT IY L+E+SQ QQE NE+DLLALDKW NLW WF I+NWLWYIKIFI IVGG Sbjct 632 DKEVSNYTQVIYNLIEESQTQQEINERDLLALDKWANLWNWFDISNWLWYIKIFIMIVGG 691 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLSI+NRVRQGYSPLSFQTLT + R PDR IEE GGEQDRDRSIRLVSG Sbjct 692 LIGLRIVFAVLSIINRVRQGYSPLSFQTLTHHQREPDRPERIEEGGGEQDRDRSIRLVSG 751 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FL LAWDDLRSLCLF YHRLRD LIAAR VE L I+RGWE LKYLG LV YW Sbjct 752 FLPLAWDDLRSLCLFCYHRLRDCALIAARIVETL-------IRRGWETLKYLGNLVIYWG 804 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAI+L DT+AIAVA+ TDR+IEV+Q RA NIPRRIRQG E AL Sbjct 805 QELKNSAINLLDTVAIAVADWTDRVIEVVQRAGRAFLNIPRRIRQGLERAL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (WMJ1 isolate)] Sequence ID: P31872.1 Length: 856 Range 1: 511 to 855 Score:547 bits(1410), Expect:0.0, Method:Compositional matrix adjust., Identities:279/352(79%), Positives:306/352(86%), Gaps:8/352(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG IGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTV Sbjct 511 AVGAIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV 570 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWN+SWSN+S + IWNNMTWM+ Sbjct 571 WGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKSMDQIWNNMTWME 630 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYT+ IY L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVG Sbjct 631 WEREIDNYTSLIYNLIEESQNQQEKNEQELLELDKWASLWNWFSITNWLWYIKIFIMIVG 690 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GL+GLRI+F+VLSIVNRVRQGYSPLSFQT P PRGPDR G EEEGGE+DRDRS+RLV Sbjct 691 GLVGLRIVFSVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGTEEEGGERDRDRSVRLVH 750 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYW Sbjct 751 GFLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYW 803 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 S ELK SA+ L + IAIAVAEGTDR+IEV+Q I RAI +IPRRIRQG E AL Sbjct 804 SKELKNSAVGLLNAIAIAVAEGTDRVIEVVQRICRAIIHIPRRIRQGLERAL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 BH10] Sequence ID: P03375.1 Length: 856 Range 1: 512 to 855 Score:547 bits(1410), Expect:0.0, Method:Compositional matrix adjust., Identities:278/351(79%), Positives:309/351(88%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 512 AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 571 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E IWNNMTWM+W Sbjct 572 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEW 631 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIK+FI IVGG Sbjct 632 DREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGG 691 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLS+VNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRSIRLV+G Sbjct 692 LVGLRIVFAVLSVVNRVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNG 751 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 752 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 804 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IEV+QG +RAI +IPRRIRQG E L Sbjct 805 QELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERIL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (SF162 ISOLATE)] Sequence ID: P19550.1 Length: 847 Range 1: 503 to 846 Score:546 bits(1407), Expect:0.0, Method:Compositional matrix adjust., Identities:281/351(80%), Positives:304/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AV +GA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 503 AVTLGAMFLGFLGAAGSTMGARSLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 562 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S + IWNNMTWM+W Sbjct 563 GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDQIWNNMTWMEW 622 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYTN IY L+E+SQNQQEKNEQ+LL LDKW +LW WF I+ WLWYIKIFI IVGG Sbjct 623 EREIDNYTNLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDISKWLWYIKIFIMIVGG 682 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+F VLSIVNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRS LV G Sbjct 683 LVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSSPLVHG 742 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDLILIAAR VELLGR RGWE LKY G L+QYW Sbjct 743 LLALIWDDLRSLCLFSYHRLRDLILIAARIVELLGR-------RGWEALKYWGNLLQYWI 795 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SLFD IAIAVAEGTDRIIEV Q I RA +IPRRIRQGFE AL Sbjct 796 QELKNSAVSLFDAIAIAVAEGTDRIIEVAQRIGRAFLHIPRRIRQGFERAL 846 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: P03377.1 Length: 861 Range 1: 517 to 860 Score:546 bits(1406), Expect:0.0, Method:Compositional matrix adjust., Identities:279/351(79%), Positives:307/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 517 AVGIGALFLGFLGAAGSTMGARSMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 576 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E IWNNMTWM+W Sbjct 577 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEW 636 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVGG Sbjct 637 DREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIVGG 696 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLSIVNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRSIRLV+G Sbjct 697 LVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNG 756 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 757 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 809 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IEV+QG RAI +IPRRIRQG E L Sbjct 810 QELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERIL 860 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:H_90CF056] Sequence ID: O70902.1 Length: 845 Range 1: 501 to 844 Score:545 bits(1405), Expect:0.0, Method:Compositional matrix adjust., Identities:280/351(80%), Positives:303/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA FLGFLGAAGSTMGAASITLTVQ RQLLSGIVQQQSNLLRAI+A+QHMLQLTVW Sbjct 501 AVGMGASFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIQARQHMLQLTVW 560 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWNSSWSN+SQ +IW+NMTWM+W Sbjct 561 GIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQSEIWDNMTWMEW 620 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 D++ISNYT IYRLLE SQ QQEKNEQDLLALDKW +LWTWF I++WLWYIKIFI IVGG Sbjct 621 DKQISNYTEEIYRLLEVSQTQQEKNEQDLLALDKWASLWTWFDISHWLWYIKIFIMIVGG 680 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRIIFAVLSIVNRVRQGYSPLSFQTL PNPRGPDR G EE GGEQDRDRS+RLV+G Sbjct 681 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLVPNPRGPDRPEGTEEGGGEQDRDRSVRLVNG 740 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FL + WDDLRSL LFSY LRDL+LI R VELLGR RG E LKYL L+QYW Sbjct 741 FLPVVWDDLRSLSLFSYRLLRDLLLIVVRTVELLGR-------RGREALKYLWNLLQYWG 793 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAI L +T AIAVAEGTD II ++Q WRAI +IPRRIRQGFE +L Sbjct 794 QELKNSAIDLLNTTAIAVAEGTDGIIVIVQRAWRAILHIPRRIRQGFERSL 844 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (BH8 ISOLATE)] Sequence ID: P04582.1 Length: 851 Range 1: 507 to 850 Score:545 bits(1405), Expect:0.0, Method:Compositional matrix adjust., Identities:276/351(79%), Positives:308/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIE QQH+LQLTVW Sbjct 507 AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEGQQHLLQLTVW 566 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E IWNNMTWM+W Sbjct 567 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEW 626 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIK+FI IVGG Sbjct 627 DREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGG 686 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLSIVNRVRQGYSPLSFQT PNPRGPDR GIEEEGGE+DRDRSIRLV+G Sbjct 687 LVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPRGPDRPEGIEEEGGERDRDRSIRLVNG 746 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 747 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 799 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA++L + AIAVAEGTDR+IE++Q +RAI +IPRRIRQG E L Sbjct 800 QELKNSAVNLLNATAIAVAEGTDRVIELVQAAYRAIRHIPRRIRQGLERIL 850 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_HXB2R] Sequence ID: P04578.2 Length: 856 Range 1: 512 to 855 Score:545 bits(1403), Expect:0.0, Method:Compositional matrix adjust., Identities:277/351(79%), Positives:307/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 512 AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 571 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E IWN+ TWM+W Sbjct 572 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEW 631 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIK+FI IVGG Sbjct 632 DREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGG 691 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLSIVNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRSIRLV+G Sbjct 692 LVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNG 751 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 752 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 804 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IEV+QG RAI +IPRRIRQG E L Sbjct 805 QELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERIL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F1_VI850] Sequence ID: Q9QSQ7.1 Length: 832 Range 1: 488 to 831 Score:544 bits(1402), Expect:0.0, Method:Compositional matrix adjust., Identities:275/351(78%), Positives:308/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A G+GA+FLGFLG + MGAASITLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 488 AAGLGALFLGFLGDSREHMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 547 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTT VPWNSSWSN+SQE+IWNNMTWM+W Sbjct 548 GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQEEIWNNMTWMEW 607 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EISNY+N IY+L+E+SQNQQEKNEQ+LLALDKW +LW WF I+NWLWYIKIFI IVGG Sbjct 608 EKEISNYSNIIYKLIEESQNQQEKNEQELLALDKWASLWNWFDISNWLWYIKIFIMIVGG 667 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLSIVNRVR+GYSPLS QTL P+PRGPDR GIEE GGEQ +DRS+RLV+G Sbjct 668 LIGLRIVFAVLSIVNRVRKGYSPLSLQTLIPSPRGPDRPEGIEEGGGEQGKDRSVRLVTG 727 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLR+LCLFSY LRD ILIAAR V+ RG++RGWE LKYLG L +YWS Sbjct 728 FLALAWDDLRNLCLFSYRHLRDFILIAARIVD-------RGLRRGWEALKYLGNLTRYWS 780 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISLF+T AI VAEGTDRIIEV+Q RA+ NIPRRIRQG E AL Sbjct 781 QELKNSAISLFNTTAIVVAEGTDRIIEVLQRAGRAVLNIPRRIRQGAERAL 831 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (isolate YU2)] Sequence ID: P35961.1 Length: 843 Range 1: 499 to 842 Score:543 bits(1400), Expect:0.0, Method:Compositional matrix adjust., Identities:270/351(77%), Positives:299/351(85%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA+FLGFLGAAGSTMGAASITLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 499 AVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 558 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWN+SWSN+S +IW+NMTWM+W Sbjct 559 GIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLNEIWDNMTWMKW 618 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT+ IY L+E SQNQQEKNEQ+LLALDKW +LW WF IT WLWYIKIFI IVGG Sbjct 619 EREIDNYTHIIYSLIEQSQNQQEKNEQELLALDKWASLWNWFDITKWLWYIKIFIMIVGG 678 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+F VLSIVNRVRQGYSPLSFQT P RGPDR GIEEEGGE+DRDRS LV G Sbjct 679 LIGLRIVFVVLSIVNRVRQGYSPLSFQTHLPAQRGPDRPDGIEEEGGERDRDRSGPLVDG 738 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLA+ W DLRSLCLFSYHRLRDL+LI R VELLGR RGW +LKY L+QYW Sbjct 739 FLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWGVLKYWWNLLQYWI 791 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IE++Q +RA+ +IP RIRQG E AL Sbjct 792 QELKNSAVSLLNATAIAVAEGTDRVIEILQRAFRAVLHIPVRIRQGLERAL 842 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:K_97ZR-EQTB11] Sequence ID: Q9QBZ8.2 Length: 851 Range 1: 507 to 850 Score:543 bits(1399), Expect:0.0, Method:Compositional matrix adjust., Identities:274/351(78%), Positives:308/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAASITLTVQ RQLLSGIVQQQ+NLLRAIEAQQ MLQLTVW Sbjct 507 AVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQQMLQLTVW 566 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQL+ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWNSSWSN+SQ +IW NMTWMQW Sbjct 567 GIKQLRARVLAVERYLRDQQLLGIWGCSGKLICTTNVPWNSSWSNKSQSEIWENMTWMQW 626 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EISN+T+TIYRL+E+SQ QQEKNEQDLLALDKW +LW WF I+NWLWYIKIFI IVGG Sbjct 627 EKEISNHTSTIYRLIEESQIQQEKNEQDLLALDKWASLWNWFDISNWLWYIKIFIMIVGG 686 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+F VLS+VNRVRQGYSPLSFQTLTP+PRGPDR GIEE GGEQD+DRS+RLVSG Sbjct 687 LIGLRIVFTVLSVVNRVRQGYSPLSFQTLTPSPRGPDRPEGIEEGGGEQDKDRSVRLVSG 746 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLR+LCLFSY LRDL+LIA R ++ RG++ WE LKYL L+ YW Sbjct 747 FLALAWDDLRNLCLFSYRHLRDLVLIATRILD-------RGLKGSWEALKYLWNLILYWG 799 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 E+K SAI+L +T AIAVAEGTDRIIE++ +RA+ +IPRRIRQGFE L Sbjct 800 QEIKNSAINLLNTTAIAVAEGTDRIIEIVYRAFRALLHIPRRIRQGFERLL 850 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F2_MP257C] Sequence ID: Q9QBZ0.2 Length: 850 Range 1: 506 to 849 Score:543 bits(1399), Expect:0.0, Method:Compositional matrix adjust., Identities:273/351(78%), Positives:305/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA+FLGFLGAAGSTMGAASITLTVQ R LLSGIVQQQSNLL+AIEAQQH+LQLTVW Sbjct 506 AVGMGAMFLGFLGAAGSTMGAASITLTVQARNLLSGIVQQQSNLLKAIEAQQHLLQLTVW 565 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLIC T VPWN SWSN+SQ++IW NMTWM+W Sbjct 566 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICPTTVPWNLSWSNKSQDEIWGNMTWMEW 625 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EI NYT+TIYRL+E +QNQQEKNEQDLLALDKW NLW WF IT WLWYI+IFI I+G Sbjct 626 EKEIGNYTDTIYRLIESAQNQQEKNEQDLLALDKWDNLWNWFSITRWLWYIEIFIMIIGS 685 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+F VLSI+NRVRQGYSPLS QTL PN RGP+R GGIEEEGGEQD+DRSIRLVSG Sbjct 686 LIGLRIVFTVLSIINRVRQGYSPLSLQTLIPNSRGPERPGGIEEEGGEQDKDRSIRLVSG 745 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDD RSLC+FSYH LR+ ILIAAR V+ +G++RGWE+LKYL L QYW Sbjct 746 FLALAWDDFRSLCVFSYHCLRNFILIAARTVD-------KGLKRGWEVLKYLWNLAQYWG 798 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL D AIAVAEGTDRIIE++Q RA+ NIPRRIRQG E AL Sbjct 799 QELKNSAISLLDRTAIAVAEGTDRIIEILQRAGRAVLNIPRRIRQGLERAL 849 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (MFA ISOLATE)] Sequence ID: P19551.1 Length: 853 Range 1: 510 to 853 Score:542 bits(1397), Expect:0.0, Method:Compositional matrix adjust., Identities:276/351(79%), Positives:307/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 510 AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 569 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E WNNMTWM+W Sbjct 570 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQFWNNMTWMEW 629 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+++SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVGG Sbjct 630 DREINNYTSLIHSLIDESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIVGG 689 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLSIVNRVRQGYSPLSFQT PN GPDR GIEEEGGE+DRDRS+RLV+G Sbjct 690 LVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNRGGPDRPEGIEEEGGERDRDRSVRLVNG 749 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 750 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 802 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IEV+QG +RAI +IPRRIRQG E L Sbjct 803 QELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERIL 853 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (JH3 ISOLATE)] Sequence ID: P12489.1 Length: 867 Range 1: 524 to 866 Score:542 bits(1397), Expect:0.0, Method:Compositional matrix adjust., Identities:268/351(76%), Positives:303/351(86%), Gaps:8/351(2%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGAVFLGFLGAAGSTMGA S+TLTVQ R LLSGIVQQQ+NLLRAIE QQH+LQLTVW Sbjct 524 AVGIGAVFLGFLGAAGSTMGA-SMTLTVQARLLLSGIVQQQNNLLRAIEGQQHLLQLTVW 582 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E+IW+NMTWM+W Sbjct 583 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEEIWDNMTWMEW 642 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT+ IY L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYI+IFI IVGG Sbjct 643 EREIDNYTSLIYTLIEESQNQQEKNEQELLGLDKWASLWNWFTITNWLWYIRIFIMIVGG 702 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+F VLSIVNRVRQGYSPLSFQT P PRGPDR GIEEEGG++DRDRS +LV G Sbjct 703 LVGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAPRGPDRPEGIEEEGGDRDRDRSGQLVDG 762 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LA+ W DLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 763 LLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 815 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SLF+ IAIAVAEGTDR+++++Q +RAI +IP RIRQG E AL Sbjct 816 QELKNSAVSLFNAIAIAVAEGTDRVLKILQRAFRAILHIPTRIRQGLERAL 866 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (SF33 ISOLATE)] Sequence ID: P19549.1 Length: 852 Range 1: 507 to 851 Score:542 bits(1396), Expect:0.0, Method:Compositional matrix adjust., Identities:280/352(80%), Positives:306/352(86%), Gaps:8/352(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG IGA+FLGFLGAAGSTMGAASITLTVQ R+LLSGIVQQQ+NLLRAIEAQQH+LQLTV Sbjct 507 AVGVIGAMFLGFLGAAGSTMGAASITLTVQARKLLSGIVQQQNNLLRAIEAQQHLLQLTV 566 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWN+SWSN+S + IWNNMTWM+ Sbjct 567 WGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLDKIWNNMTWME 626 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYT+ IY LLE+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYI+IFI IVG Sbjct 627 WEREIDNYTSLIYTLLEESQNQQEKNEQELLELDKWASLWNWFSITNWLWYIRIFIMIVG 686 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTL P RGPDR GIEE GGE+DRDRS RLV+ Sbjct 687 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLIPAQRGPDRPEGIEEGGGERDRDRSTRLVN 746 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLAL WDDLRSLCLFSYHRL DL+LI AR VELLGR RGWE+LKY L+ YW Sbjct 747 GFLALFWDDLRSLCLFSYHRLTDLLLIVARIVELLGR-------RGWEVLKYWWNLLLYW 799 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 S ELK SA+SL + AIAVAEGTDR+IEV+Q + RAI +IP RIRQGFE AL Sbjct 800 SQELKNSAVSLLNATAIAVAEGTDRVIEVVQRVGRAILHIPTRIRQGFERAL 851 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F2_MP255C] Sequence ID: Q9QBZ4.2 Length: 843 Range 1: 499 to 842 Score:541 bits(1394), Expect:0.0, Method:Compositional matrix adjust., Identities:276/351(79%), Positives:305/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GAV GFLGAAGSTMGAA+ITLT Q RQLLSGIVQQQSNLL+AIEAQQH+LQLTVW Sbjct 499 AVGMGAVLFGFLGAAGSTMGAAAITLTAQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVW 558 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTT V WNSSWSN+S +DIW+NMTWMQW Sbjct 559 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTNVRWNSSWSNKSYDDIWDNMTWMQW 618 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EI NYT TIY L+ED+QNQQE+NEQ+LLALDKW +LW+WF ITNWLWYIKIFI IVGG Sbjct 619 EKEIDNYTKTIYSLIEDAQNQQERNEQELLALDKWDSLWSWFSITNWLWYIKIFIMIVGG 678 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLS+VNRVRQGYSPLS QTL PNPRGPDR GGIEEEGGE DRDRS+RLVSG Sbjct 679 LIGLRIVFAVLSVVNRVRQGYSPLSLQTLIPNPRGPDRPGGIEEEGGEPDRDRSMRLVSG 738 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FL L WDDLRSLC FSY LRDL+LIAAR V+ RG++ GWE LKYL L Q+W Sbjct 739 FLPLTWDDLRSLCSFSYRHLRDLLLIAARTVD-------RGVKGGWEALKYLWNLTQHWG 791 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISLFDTIAIAVAEGTDRIIEV+Q RA+ +IPRRIRQG E L Sbjct 792 RELKNSAISLFDTIAIAVAEGTDRIIEVLQRAGRAVLHIPRRIRQGAERFL 842 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:J_SE9280] Sequence ID: Q9WC60.1 Length: 848 Range 1: 504 to 847 Score:541 bits(1393), Expect:0.0, Method:Compositional matrix adjust., Identities:280/351(80%), Positives:304/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGAVFLGFLG AGSTMGAASITLTVQVRQLLSGIVQQQSNLL+AIEAQQH+L+LTVW Sbjct 504 AVGIGAVFLGFLGTAGSTMGAASITLTVQVRQLLSGIVQQQSNLLKAIEAQQHLLKLTVW 563 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTT VPWN+SWSN+S EDIW NMTW+QW Sbjct 564 GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNASWSNKSYEDIWENMTWIQW 623 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI+NYT IY L+E++QNQQE NE+DLLALDKW NLW WF I+NWLWYIKIFI I+GG Sbjct 624 EREINNYTGIIYSLIEEAQNQQENNEKDLLALDKWTNLWNWFNISNWLWYIKIFIMIIGG 683 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRIIFAVL+IVNRVRQGYSPLSFQTL PNP DR GGIEE GGEQ R RSIRLV+G Sbjct 684 LIGLRIIFAVLAIVNRVRQGYSPLSFQTLIPNPTEADRPGGIEEGGGEQGRTRSIRLVNG 743 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLR+LCLFSYHRLRD +LIAAR V LG RGWEILKYL LV YW Sbjct 744 FLALAWDDLRNLCLFSYHRLRDFVLIAARTVGTLGL-------RGWEILKYLVNLVWYWG 796 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL +T AIAVAEGTDRIIE+ Q +RAI +IPRRIRQG E AL Sbjct 797 QELKNSAISLLNTTAIAVAEGTDRIIEIAQRAFRAILHIPRRIRQGLERAL 847 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 lw12.3 isolate] Sequence ID: Q70626.1 Length: 856 Range 1: 512 to 855 Score:540 bits(1392), Expect:0.0, Method:Compositional matrix adjust., Identities:276/351(79%), Positives:306/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 512 AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 571 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S E IWN+ TWM+W Sbjct 572 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEW 631 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVGG Sbjct 632 DREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIVGG 691 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLSIVNRVRQG+SPLSFQT P P GPDR GIEEEGGE+DRDRSIRLV+G Sbjct 692 LVGLRIVFAVLSIVNRVRQGHSPLSFQTHLPTPGGPDRPEGIEEEGGERDRDRSIRLVNG 751 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 752 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 804 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IEV+QG RAI +IPRRIRQG E L Sbjct 805 QELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERIL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:J_SE9173] Sequence ID: Q9WC69.1 Length: 850 Range 1: 506 to 849 Score:539 bits(1389), Expect:0.0, Method:Compositional matrix adjust., Identities:280/351(80%), Positives:303/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGAVFLGFLG AGSTMGAASITLTVQVRQLLSGIVQQQSNLL+AI AQQH+L+LTVW Sbjct 506 AVGIGAVFLGFLGTAGSTMGAASITLTVQVRQLLSGIVQQQSNLLKAIXAQQHLLKLTVW 565 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTT VPWN+SWSN+S EDIW NMTW+QW Sbjct 566 GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNASWSNKSYEDIWENMTWIQW 625 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI+NYT IY L+E++QNQQE NE+DLLALDKW NLW WF I+NWLWYIKIFI I+GG Sbjct 626 EREINNYTGIIYSLIEEAQNQQETNEKDLLALDKWTNLWNWFNISNWLWYIKIFIMIIGG 685 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRIIFAVL+IVNRVRQGYSPLSFQTL PNP DR GGIEE GGEQ R RSIRLV+G Sbjct 686 LIGLRIIFAVLAIVNRVRQGYSPLSFQTLIPNPTEADRPGGIEEGGGEQGRTRSIRLVNG 745 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLRSLCLFSYHRLRD +LIAAR V LG RGWEILKYL LV YW Sbjct 746 FLALAWDDLRSLCLFSYHRLRDFVLIAARTVGTLGL-------RGWEILKYLVNLVWYWG 798 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL +T AIAVAEGTDRIIE+ Q +RAI +IPRRIRQG E AL Sbjct 799 QELKNSAISLLNTTAIAVAEGTDRIIEIAQRAFRAILHIPRRIRQGLERAL 849 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (HXB3 ISOLATE)] Sequence ID: P04624.3 Length: 856 Range 1: 512 to 855 Score:539 bits(1389), Expect:0.0, Method:Compositional matrix adjust., Identities:274/351(78%), Positives:307/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 512 AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 571 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKL+CTTAVPWN+SWSN+S E IWN+ TWM+W Sbjct 572 GIKQLQARILAVERYLKDQQLLGIWGCSGKLLCTTAVPWNASWSNKSLEQIWNHTTWMEW 631 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DREI+NYT+ I+ L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIK+FI IVGG Sbjct 632 DREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGG 691 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+FAVLS+VNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRSIRLV+G Sbjct 692 LVGLRIVFAVLSVVNRVRQGYSPLSFQTHLPIPRGPDRPEGIEEEGGERDRDRSIRLVNG 751 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYWS Sbjct 752 SLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 804 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IEV+Q +RAI +IPRRIRQG E L Sbjct 805 QELKNSAVSLLNATAIAVAEGTDRVIEVVQEAYRAIRHIPRRIRQGLERIL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:F1_93BR020] Sequence ID: O89292.1 Length: 846 Range 1: 502 to 845 Score:538 bits(1387), Expect:0.0, Method:Compositional matrix adjust., Identities:274/351(78%), Positives:303/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA+FLGFLGAAGSTMGAASITLTVQ RQLLSGIVQQQSNLLRAIEAQQH+LQLTVW Sbjct 502 AVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVW 561 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLG+WGCSGKLICTT VPWNSSWSN+S E+IW NMTWM+W Sbjct 562 GIKQLQARVLAVERYLKDQQLLGLWGCSGKLICTTNVPWNSSWSNKSLEEIWGNMTWMEW 621 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++E+SNY+ IYRL+EDSQNQQEKNEQ+LLALDKW +LW WF IT WLWYIKIFI IVGG Sbjct 622 EKEVSNYSKEIYRLIEDSQNQQEKNEQELLALDKWASLWNWFDITQWLWYIKIFIMIVGG 681 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+F VLSIVNRVR+GYSPLSFQT P+PR PDR GIEE GGEQ +DRS+RLV+G Sbjct 682 LIGLRIVFTVLSIVNRVRKGYSPLSFQTHIPSPREPDRPEGIEEGGGEQGKDRSVRLVTG 741 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLR+LCLFSY LRD ILIAAR V+ RG++RGWE LKYLG L QYW Sbjct 742 FLALAWDDLRNLCLFSYRHLRDFILIAARIVD-------RGLKRGWEALKYLGNLTQYWG 794 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL + AIAVAE TDR+IE +Q RAI NIPRRIRQG E AL Sbjct 795 QELKNSAISLLNATAIAVAEWTDRVIEALQRAGRAILNIPRRIRQGLERAL 845 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (OYI ISOLATE)] Sequence ID: P20888.1 Length: 855 Range 1: 510 to 854 Score:537 bits(1384), Expect:0.0, Method:Compositional matrix adjust., Identities:276/352(78%), Positives:304/352(86%), Gaps:8/352(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG +GA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTV Sbjct 510 AVGMLGAMFLGFLGAAGSTMGARSMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV 569 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTT VPWN+SWSN+S +IW+NMTWMQ Sbjct 570 WGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNASWSNKSLNEIWDNMTWMQ 629 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYT+ IY L+E+SQNQQEKNEQ+LL LDKW LW+WF ITNWLWYI+IFI IVG Sbjct 630 WEREIDNYTHLIYTLIEESQNQQEKNEQELLELDKWAGLWSWFSITNWLWYIRIFIIIVG 689 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GL+GLRI+FAVLSIVNRVRQGYSPLSFQT P RGPDR GIEEEGGE+DRDRS RLV Sbjct 690 GLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPTQRGPDRPEGIEEEGGERDRDRSGRLVD 749 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLAL WDDLRSLCLFSYHRLRDLILI AR VELLGR RGWE+LKY L+QYW Sbjct 750 GFLALIWDDLRSLCLFSYHRLRDLILIVARIVELLGR-------RGWEVLKYWWNLLQYW 802 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 S ELK S ISL + AIAVAEGTDR+IE++Q +RA NIPRRIRQG E AL Sbjct 803 SQELKNSVISLLNATAIAVAEGTDRVIEIVQRAYRAFLNIPRRIRQGLERAL 854 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (JRCSF ISOLATE)] Sequence ID: P20871.1 Length: 848 Range 1: 504 to 847 Score:536 bits(1381), Expect:0.0, Method:Compositional matrix adjust., Identities:276/351(79%), Positives:305/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQHMLQLTVW Sbjct 504 AVGIGALFLGFLGAAGSTMGARSMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVW 563 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQL+GIWGCSGKLICTTAVPWN+SWSN+S + IWNNMTWM+W Sbjct 564 GIKQLQARVLAVERYLKDQQLMGIWGCSGKLICTTAVPWNTSWSNKSLDSIWNNMTWMEW 623 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EI NYTNTIY L+E+SQ QQEKNEQ+LL LDKW +LW WFGIT WLWYIKIFI IVGG Sbjct 624 EKEIENYTNTIYTLIEESQIQQEKNEQELLELDKWASLWNWFGITKWLWYIKIFIMIVGG 683 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+F+VLSIVNRVRQGYSPLSFQTL P RGPDR GIEEEGGE+DRDRS +LV+G Sbjct 684 LIGLRIVFSVLSIVNRVRQGYSPLSFQTLLPATRGPDRPEGIEEEGGERDRDRSGQLVNG 743 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLAL W DLRSL LFSYHRLRDL+L R VELLGR RGWEILKY L+QYWS Sbjct 744 FLALIWVDLRSLFLFSYHRLRDLLLTVTRIVELLGR-------RGWEILKYWWNLLQYWS 796 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDRIIEV+Q ++RAI +IP RIRQG E AL Sbjct 797 QELKNSAVSLLNATAIAVAEGTDRIIEVVQRVYRAILHIPTRIRQGLERAL 847 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (WMJ2 ISOLATE)] Sequence ID: P05880.1 Length: 847 Range 1: 502 to 846 Score:535 bits(1379), Expect:0.0, Method:Compositional matrix adjust., Identities:276/352(78%), Positives:303/352(86%), Gaps:8/352(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG IGA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAI+AQQH+LQLTV Sbjct 502 AVGTIGAMFLGFLGAAGSTMGAGSLTLTVQARQLLSGIVQQQNNLLRAIDAQQHLLQLTV 561 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWN+SWSN+S IW+N+TWM+ Sbjct 562 WGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKSMNQIWDNLTWME 621 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYT+ IY L+E+SQNQQ KNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVG Sbjct 622 WEREIDNYTSIIYSLIEESQNQQGKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVG 681 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GLIGLRI+F VLSIVNRVRQGYSPLSFQT P PRGPDR GIEEEGGE+DRDRS+RLV Sbjct 682 GLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSVRLVH 741 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLAL WDDLRSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYW Sbjct 742 GFLALIWDDLRSLCLFSYHRLRDLLLIVKRIVELLGR-------RGWEALKYWWNLLQYW 794 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 S ELK SA+ L + IAIAVAEGTDR+IEV+Q I RAI +IPRRIRQG E AL Sbjct 795 SKELKNSAVGLLNAIAIAVAEGTDRVIEVVQRICRAIIHIPRRIRQGLERAL 846 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:K_96CM-MP535] Sequence ID: Q9QBY2.2 Length: 842 Range 1: 498 to 841 Score:533 bits(1373), Expect:0.0, Method:Compositional matrix adjust., Identities:273/351(78%), Positives:306/351(87%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GAVF GFLGAAGSTMGAASITLTVQ RQLLSGIVQQQSNLLRAIEAQQH+LQLTVW Sbjct 498 AVGLGAVFFGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLTVW 557 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQL+ R+LA+ERYL+DQQLLGIWGCSGKLICTT VPWNSSWSN+S E+IWNNMTWM+W Sbjct 558 GIKQLRARILAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSWEEIWNNMTWMEW 617 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EI NY++TIY+L+E+SQ QQEKNEQDLLALDKW +LW WF IT WLWYIKIFI I+GG Sbjct 618 EKEIGNYSDTIYKLIEESQTQQEKNEQDLLALDKWASLWNWFDITKWLWYIKIFIMIIGG 677 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI FAVLS+VNRVRQGYSPLSFQTL P RG DR GIEEEGGEQD++RS+RLVSG Sbjct 678 LIGLRIAFAVLSVVNRVRQGYSPLSFQTLIPTSRGADRPEGIEEEGGEQDKNRSVRLVSG 737 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAWDDLR+LCLFSY +LR+LILI R +E RG++ GWE LKYL LVQYWS Sbjct 738 FLALAWDDLRNLCLFSYRQLRNLILIVTRILE-------RGLRGGWEALKYLWNLVQYWS 790 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL +T AIAVA GTDRIIE+ Q +RA+ +IPRRIRQG E AL Sbjct 791 QELKNSAISLLNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGLERAL 841 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (ZAIRE 6 ISOLATE)] Sequence ID: P04580.1 Length: 855 Range 1: 511 to 854 Score:532 bits(1370), Expect:0.0, Method:Compositional matrix adjust., Identities:275/351(78%), Positives:305/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GA+FLGFLGAAGSTMGAAS+TLTVQ RQL+SGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 511 AIGLGAMFLGFLGAAGSTMGAASVTLTVQARQLMSGIVQQQNNLLRAIEAQQHLLQLTVW 570 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTT VPWNSSWSNRS DIW NMTWM+W Sbjct 571 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNRSLNDIWQNMTWMEW 630 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT IYRL+E+SQ QQEKNEQ+LL LDKW +LW WF IT WLWYIKIFI IVGG Sbjct 631 EREIDNYTGLIYRLIEESQTQQEKNEQELLELDKWASLWNWFNITQWLWYIKIFIMIVGG 690 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLS+VNRVRQGYSPLSFQTL P PR PDR GIEEEGGE+ RDRSIRLV+G Sbjct 691 LIGLRIVFAVLSLVNRVRQGYSPLSFQTLLPAPREPDRPEGIEEEGGERGRDRSIRLVNG 750 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 F AL WDDLR+LCLFSYHRLRDLILIAAR VELLGR RGWE LKYL L+QYWS Sbjct 751 FSALIWDDLRNLCLFSYHRLRDLILIAARIVELLGR-------RGWEALKYLWNLLQYWS 803 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 EL+ SA SL DTIAIAVAEGTDR+IE+++ +RA+ N+P RIRQG E L Sbjct 804 RELRNSASSLLDTIAIAVAEGTDRVIEIVRRTYRAVLNVPTRIRQGLERLL 854 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: P12487.1 Length: 853 Range 1: 509 to 852 Score:531 bits(1368), Expect:0.0, Method:Compositional matrix adjust., Identities:277/351(79%), Positives:304/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GA+FLGFLGAAGSTMGA S+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 509 AIGLGAMFLGFLGAAGSTMGARSLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 568 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGKLICTT VPWNSSWSNRS DIW NMTWM+W Sbjct 569 GIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNRSLNDIWQNMTWMEW 628 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT IYRL+E+SQ QQEKNEQ+LL LDKW +LW WF IT WLWYIKIFI IVGG Sbjct 629 EREIDNYTGLIYRLIEESQTQQEKNEQELLELDKWASLWNWFNITQWLWYIKIFIMIVGG 688 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLS+VNRVRQGYSPLSFQTL P PRGPDR GIEEEGGE+ RDRSIRLV+G Sbjct 689 LIGLRIVFAVLSLVNRVRQGYSPLSFQTLLPAPRGPDRPEGIEEEGGERGRDRSIRLVNG 748 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 F AL WDDLR+LCLFSYHRLRDLILIAAR VELLGR RGWE LKYL L+QYWS Sbjct 749 FSALIWDDLRNLCLFSYHRLRDLILIAARIVELLGR-------RGWEALKYLWNLLQYWS 801 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA SL DTIAIAVAEGTDR+IE+++ RA+ +IP RIRQG E L Sbjct 802 RELKNSASSLLDTIAIAVAEGTDRVIEIVRRACRAVLHIPTRIRQGLERLL 852 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (Z-84 ISOLATE)] Sequence ID: P05882.1 Length: 863 Range 1: 519 to 862 Score:530 bits(1365), Expect:0.0, Method:Compositional matrix adjust., Identities:272/351(77%), Positives:300/351(85%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GAVFLGFLGAAGSTMGA S+ LT Q RQLLSGIVQQQ+NLLRAIEAQQHMLQLTVW Sbjct 519 AIGLGAVFLGFLGAAGSTMGAVSVALTGQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVW 578 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+E YL+DQQLLGIWGCSGK ICTT VPWNSSWSN+S E+IWNNMTW++W Sbjct 579 GIKQLQARVLAVESYLKDQQLLGIWGCSGKHICTTTVPWNSSWSNKSLEEIWNNMTWIEW 638 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT IY L+E+SQ QQEKNEQDLL LDKW +LW WF IT WLWYIKIFI IVGG Sbjct 639 EREIDNYTGVIYSLIENSQIQQEKNEQDLLQLDKWASLWNWFSITKWLWYIKIFIMIVGG 698 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+F VLS+VNRVRQGYSPLSFQTL P PRGPDR GIEEEGGEQ RDRSIRLV+G Sbjct 699 LIGLRIVFTVLSLVNRVRQGYSPLSFQTLLPAPRGPDRPEGIEEEGGEQGRDRSIRLVNG 758 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 F AL WDDLR+LCLFSYHRLRDLILIA R VELLGR RGWE +KYL L+QYW+ Sbjct 759 FSALFWDDLRNLCLFSYHRLRDLILIATRIVELLGR-------RGWEAIKYLWSLLQYWT 811 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK S ISL + AIAVAEGTDRIIE+I+ +RA+ +IPRR+RQG E AL Sbjct 812 QELKNSFISLLNATAIAVAEGTDRIIELIRRAFRAVLHIPRRVRQGLERAL 862 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (KB-1 isolate)] Sequence ID: P31819.1 Length: 861 Range 1: 518 to 860 Score:528 bits(1360), Expect:0.0, Method:Compositional matrix adjust., Identities:269/351(77%), Positives:302/351(86%), Gaps:8/351(2%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGAVFLGFLGAAGSTMGAA++TLTVQ RQLL GIVQQQ+NLLRAI+AQQH+LQLTVW Sbjct 518 AVGIGAVFLGFLGAAGSTMGAAAVTLTVQARQLLPGIVQQQNNLLRAIDAQQHLLQLTVW 577 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQL+GIWGCSGK ICTTAVPWN+SWSN+S +IW+NMTWM+W Sbjct 578 GIKQLQARVLAVERYLKDQQLMGIWGCSGKFICTTAVPWNTSWSNKSFNEIWDNMTWMEW 637 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI+NYTN IY L+E+SQNQQEKNEQDLLALDKW +LW WF IT WLWYIKIFI IVGG Sbjct 638 EREINNYTNLIYNLIEESQNQQEKNEQDLLALDKWDSLWNWFSITKWLWYIKIFIMIVGG 697 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+GLRI+F VLSIVNRVRQGYSPLSFQT P RGPDR GIEEEGGE+DRDRS LV G Sbjct 698 LVGLRIVFTVLSIVNRVRQGYSPLSFQTRLP-ARGPDRPEGIEEEGGERDRDRSGPLVDG 756 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 LAL W DLRSLCLFSYHRLRDL+LI R VELLGR +GWE+LKYL L+QYWS Sbjct 757 LLALIWVDLRSLCLFSYHRLRDLLLIVTRTVELLGR-------KGWEVLKYLWNLLQYWS 809 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+IE++Q +RAI +IP +IRQG E AL Sbjct 810 QELKNSAVSLLNATAIAVAEGTDRVIEILQRTYRAILHIPVKIRQGLERAL 860 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (NDK ISOLATE)] Sequence ID: P18799.1 Length: 846 Range 1: 502 to 845 Score:528 bits(1359), Expect:0.0, Method:Compositional matrix adjust., Identities:272/351(77%), Positives:300/351(85%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GAVFLGFLGAAGSTMGAAS+TLTVQ RQL+SGIV QQ+NLLRAIEAQQH+LQLTVW Sbjct 502 AIGLGAVFLGFLGAAGSTMGAASVTLTVQARQLMSGIVHQQNNLLRAIEAQQHLLQLTVW 561 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYLRDQQLLGIWGCSG+ ICTT VPWNSSWSNRS ++IW NMTWM+W Sbjct 562 GIKQLQARVLAVERYLRDQQLLGIWGCSGRHICTTNVPWNSSWSNRSLDEIWQNMTWMEW 621 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT IY L+E+SQ QQEKNE++LL LDKW +LW WF IT WLWYIK+FI IVGG Sbjct 622 EREIDNYTGLIYSLIEESQIQQEKNEKELLELDKWASLWNWFSITKWLWYIKLFIMIVGG 681 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLS+VNRVRQGYSPLSFQTL P PRGPDR IEEEGGE+ RDRSIRLV+G Sbjct 682 LIGLRIVFAVLSVVNRVRQGYSPLSFQTLLPVPRGPDRPEEIEEEGGERGRDRSIRLVNG 741 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 AL WDDLR+LCLFSYHRLRD ILIAAR VELLGR RGWE LKYL L+QYWS Sbjct 742 LFALFWDDLRNLCLFSYHRLRDSILIAARIVELLGR-------RGWEALKYLWNLLQYWS 794 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 EL+ SA SL DTIAIAVAE TDR+IEV+Q RAI N+PRRIRQG E L Sbjct 795 QELRNSASSLLDTIAIAVAERTDRVIEVVQRACRAILNVPRRIRQGLERLL 845 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (ELI ISOLATE)] Sequence ID: P04581.1 Length: 853 Range 1: 509 to 852 Score:527 bits(1358), Expect:0.0, Method:Compositional matrix adjust., Identities:271/351(77%), Positives:303/351(86%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GA+FLGFLGAAGSTMGA S+TLTVQ RQL+SGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 509 AIGLGAMFLGFLGAAGSTMGARSVTLTVQARQLMSGIVQQQNNLLRAIEAQQHLLQLTVW 568 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ R+LA+ERYL+DQQLLGIWGCSGK ICTT VPWNSSWSNRS +IW NMTWM+W Sbjct 569 GIKQLQARILAVERYLKDQQLLGIWGCSGKHICTTNVPWNSSWSNRSLNEIWQNMTWMEW 628 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT IY L+E+SQ QQEKNE++LL LDKW +LW WF IT WLWYIKIFI I+GG Sbjct 629 EREIDNYTGLIYSLIEESQTQQEKNEKELLELDKWASLWNWFSITQWLWYIKIFIMIIGG 688 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLS+VNRVRQGYSPLSFQTL P PRGPDR G EEEGGE+ RDRS+RL++G Sbjct 689 LIGLRIVFAVLSLVNRVRQGYSPLSFQTLLPAPRGPDRPEGTEEEGGERGRDRSVRLLNG 748 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 F AL WDDLRSLCLFSYHRLRDLILIA R VELLGR RGW+ILKYL L+QYWS Sbjct 749 FSALIWDDLRSLCLFSYHRLRDLILIAVRIVELLGR-------RGWDILKYLWNLLQYWS 801 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 EL+ SA SLFD IAIAVAEGTDR+IE+IQ RA+ NIPRRIRQG E +L Sbjct 802 QELRNSASSLFDAIAIAVAEGTDRVIEIIQRACRAVLNIPRRIRQGLERSL 852 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [SIVcpz MB66] Sequence ID: Q1A261.1 Length: 880 Range 1: 529 to 879 Score:527 bits(1357), Expect:0.0, Method:Compositional matrix adjust., Identities:265/351(75%), Positives:302/351(86%), Gaps:0/351(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQSNLLRAIEAQQH+LQL+VW Sbjct 529 AVGLGALFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQLSVW 588 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLG+WGCSGKLICTT+VPWN++W+N+S +DIW NMTWMQW Sbjct 589 GIKQLQARVLAVERYLKDQQLLGLWGCSGKLICTTSVPWNTTWTNKSYDDIWYNMTWMQW 648 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 D+E+SNYT+ IY LLE +Q QQE NE++LL LDKW +LW WF IT+WLWYIKIFI IVGG Sbjct 649 DKEVSNYTDVIYNLLEKAQTQQENNEKELLELDKWASLWNWFDITSWLWYIKIFIIIVGG 708 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FA+LSIVNRVRQGYSPLSFQTL P R DR IEE GGE D RSIRLVSG Sbjct 709 LIGLRIVFALLSIVNRVRQGYSPLSFQTLIPARRDRDRPEEIEEGGGEPDNVRSIRLVSG 768 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLALAW+DLR LCLF YHRLRDL+LI R +EL+G++ L+G++RG E L +L G++QYW Sbjct 769 FLALAWNDLRDLCLFLYHRLRDLLLIVLRTLELVGQTLLKGLRRGREALIHLRGILQYWG 828 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL DT AIAVAEGTDRIIE+ Q R I NIPRRIRQG E AL Sbjct 829 QELKTSAISLLDTTAIAVAEGTDRIIEIAQRFGRGILNIPRRIRQGLERAL 879 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (RF/HAT ISOLATE)] Sequence ID: P04579.1 Length: 865 Range 1: 520 to 864 Score:525 bits(1353), Expect:1e-180, Method:Compositional matrix adjust., Identities:274/352(78%), Positives:295/352(83%), Gaps:8/352(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG IGA+FLGFLGAAGSTMGA SITLTVQ R LLSGIVQQQ+NLLRAIEAQQH+LQLTV Sbjct 520 AVGTIGAMFLGFLGAAGSTMGAGSITLTVQARHLLSGIVQQQNNLLRAIEAQQHLLQLTV 579 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWN+SWSN+S IWNNMTWMQ Sbjct 580 WGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKSLNMIWNNMTWMQ 639 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYT IY LLE+SQNQQEKNEQ+LL LDKW NLW WF IT WLWYI+IFI IVG Sbjct 640 WEREIDNYTGIIYNLLEESQNQQEKNEQELLELDKWANLWNWFDITQWLWYIRIFIMIVG 699 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GL+GL+I+FAVLSIVNRVRQGYSPLSFQT P PRGPDR GIE EGGE+DRDRS V+ Sbjct 700 GLVGLKIVFAVLSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGGAVN 759 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFL L WDDL +LC FSYHRLRDL+LI R VELLGR RGWE LKY L+QYW Sbjct 760 GFLTLIWDDLWTLCSFSYHRLRDLLLIVVRIVELLGR-------RGWEALKYWWNLLQYW 812 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 S ELK SA+SL +T AIAVAEGTDRIIEV Q I RA +IPRRIRQG E AL Sbjct 813 SQELKNSAVSLLNTTAIAVAEGTDRIIEVAQRILRAFLHIPRRIRQGLERAL 864 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (BRAIN ISOLATE)] Sequence ID: P12488.1 Length: 852 Range 1: 508 to 852 Score:524 bits(1349), Expect:3e-180, Method:Compositional matrix adjust., Identities:273/352(78%), Positives:299/352(84%), Gaps:7/352(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+GA+FLGFLGAAGSTMGAAS+TLTVQ R LLSGIVQQQ+NLL AIEAQQHML+LTVW Sbjct 508 AVGLGALFLGFLGAAGSTMGAASLTLTVQARLLLSGIVQQQNNLLMAIEAQQHMLELTVW 567 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQQLLGIWGCSGKLICTTAVPWN+SWSN+S DIW+NMTWM+W Sbjct 568 GIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLSDIWDNMTWMEW 627 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYTN IY L+EDSQ QQEKNE++LL LDKW +LW WF ITNWLWYIKIFI IVGG Sbjct 628 EREIDNYTNLIYSLIEDSQIQQEKNEKELLELDKWASLWNWFNITNWLWYIKIFIMIVGG 687 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLSIVNRVRQGYSPLSFQT P RGPDR GIEEEGGE+DRDRS LV G Sbjct 688 LIGLRIVFAVLSIVNRVRQGYSPLSFQTRLPGRRGPDRPEGIEEEGGERDRDRSSPLVDG 747 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLAL W DLRSL LFSYHRLRDL+LI R VELLGR RGWE+LKY L+QYWS Sbjct 748 FLALFWVDLRSLFLFSYHRLRDLLLIVTRIVELLGR-------RGWEVLKYWWNLLQYWS 800 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ 352 ELK SA+SL + AIAV E TDR IEV+Q +RAI +IPRRIRQG E ALQ Sbjct 801 QELKNSAVSLLNATAIAVGERTDRAIEVVQRAFRAILHIPRRIRQGLERALQ 852 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (MAL ISOLATE)] Sequence ID: P04583.1 Length: 859 Range 1: 514 to 858 Score:520 bits(1340), Expect:7e-179, Method:Compositional matrix adjust., Identities:273/352(78%), Positives:303/352(86%), Gaps:8/352(2%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A+G+GA+FLGFLGAAGSTMGAAS+TLTVQ RQLLSGIVQQQ+NLLRAIEAQQH+LQLTVW Sbjct 514 AIGLGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVW 573 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYL+DQ+LLG+WGCSGK ICTT VPWNSSWSNRS +DIWNNMTWMQW Sbjct 574 GIKQLQARVLAVERYLQDQRLLGMWGCSGKHICTTFVPWNSSWSNRSLDDIWNNMTWMQW 633 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 ++EISNYT IY L+E+SQ QQEKNE++LL LDKW +LW WF I+ WLWYI+IFI +VGG Sbjct 634 EKEISNYTGIIYNLIEESQIQQEKNEKELLELDKWASLWNWFSISKWLWYIRIFIIVVGG 693 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRG-PDRLGGIEEEGGEQDRDRSIRLVS 239 LIGLRIIFAVLS+VNRVRQGYSPLS QTL P PRG PDR GIEEEGGEQ R RSIRLV+ Sbjct 694 LIGLRIIFAVLSLVNRVRQGYSPLSLQTLLPTPRGPPDRPEGIEEEGGEQGRGRSIRLVN 753 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GF AL WDDLR+LCLFSYHRLRDL+LIA R VELLGR RGWE LKYL L+QYW Sbjct 754 GFSALIWDDLRNLCLFSYHRLRDLLLIATRIVELLGR-------RGWEALKYLWNLLQYW 806 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL +T AIAVAE TDR+IE+ Q RAI +IPRRIRQGFE AL Sbjct 807 GQELKNSAISLLNTTAIAVAECTDRVIEIGQRFGRAILHIPRRIRQGFERAL 858 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (SC ISOLATE)] Sequence ID: P05878.1 Length: 856 Range 1: 511 to 856 Score:518 bits(1335), Expect:4e-178, Method:Compositional matrix adjust., Identities:269/353(76%), Positives:299/353(84%), Gaps:8/353(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG IGA+FLGFLGAAGSTMGA S+TLTVQ R LLSGIVQQQ+NLLRAIEAQQH+LQLTV Sbjct 511 AVGTIGAMFLGFLGAAGSTMGATSMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTV 570 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ RVLA+ERYLRDQQLLGIWGCSGKLICTT VPWN+SWSN+S + IW NMTWM+ Sbjct 571 WGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLDKIWGNMTWME 630 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 W+REI NYT+ IY L+E+SQNQQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVG Sbjct 631 WEREIDNYTSLIYTLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKIFIMIVG 690 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GL+GLRI+F VLSIVNRVRQGYSPLSFQT P+ RGPDR GIEEEGGE+DRDRS RLV Sbjct 691 GLVGLRIVFTVLSIVNRVRQGYSPLSFQTRLPSQRGPDRPEGIEEEGGERDRDRSGRLVD 750 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLA+ W D RSLCLFSYHRLRDL+LI R VELLGR RGWE LKY L+QYW Sbjct 751 GFLAIIWVDXRSLCLFSYHRLRDLLLIVTRIVELLGR-------RGWEALKYWWNLLQYW 803 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ 352 S EL+ SA+S + AIAVAEGTDR+IE++Q +RAI +IP RIRQG E ALQ Sbjct 804 SQELRNSAVSFVNATAIAVAEGTDRVIELLQRAFRAILHIPTRIRQGLERALQ 856 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_MN] Sequence ID: P05877.1 Length: 856 Range 1: 515 to 855 Score:518 bits(1334), Expect:5e-178, Method:Compositional matrix adjust., Identities:271/349(78%), Positives:295/349(84%), Gaps:8/349(2%) Query 3 GIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGI 62 IGA+FLGFLGAAGSTMGAAS+TLTVQ R LLSGIVQQQ+NLLRAIEAQQHMLQLTVWGI Sbjct 515 AIGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHMLQLTVWGI 574 Query 63 KQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDR 122 KQLQ RVLA+ERYL+DQQLLG WGCSGKLICTT VPWN+SWSN+S +DIWNNMTWMQW+R Sbjct 575 KQLQARVLAVERYLKDQQLLGFWGCSGKLICTTTVPWNASWSNKSLDDIWNNMTWMQWER 634 Query 123 EISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLI 182 EI NYT+ IY LLE SQ QQEKNEQ+LL LDKW +LW WF ITNWLWYIKIFI IVGGL+ Sbjct 635 EIDNYTSLIYSLLEKSQTQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGLV 694 Query 183 GLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSGFL 242 GLRI+FAVLSIVNRVRQGYSPLS QT P PRGPDR GIEEEGGE+DRD S RLV GFL Sbjct 695 GLRIVFAVLSIVNRVRQGYSPLSLQTRPPVPRGPDRPEGIEEEGGERDRDTSGRLVHGFL 754 Query 243 ALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWSLE 302 A+ W DLRSL LFSYH RDL+LIAAR VELLGR RGWE+LKY L+QYWS E Sbjct 755 AIIWVDLRSLFLFSYHH-RDLLLIAARIVELLGR-------RGWEVLKYWWNLLQYWSQE 806 Query 303 LKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 LK SA+SL + AIAVAEGTDR+IEV+Q RAI +IP RIRQG E AL Sbjct 807 LKSSAVSLLNATAIAVAEGTDRVIEVLQRAGRAILHIPTRIRQGLERAL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 1 (CDC-451 ISOLATE)] Sequence ID: P05879.1 Length: 868 Range 1: 523 to 867 Score:511 bits(1315), Expect:7e-175, Method:Compositional matrix adjust., Identities:273/352(78%), Positives:304/352(86%), Gaps:8/352(2%) Query 1 AVG-IGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTV 59 AVG +GA+FLGFLGAAGSTMGA S+ LTVQ RQLLSGIVQQQ+NLLRAI+AQQH+LQLTV Sbjct 523 AVGMLGAMFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIKAQQHLLQLTV 582 Query 60 WGIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQ 119 WGIKQLQ R+LA+ERYL+DQQLLG WGCSGKLICTTAVPWN+SWSN++ + IWNNMTWM+ Sbjct 583 WGIKQLQARILAVERYLKDQQLLGFWGCSGKLICTTAVPWNASWSNKTLDQIWNNMTWME 642 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 WDREI NYT+ IY L+E+SQNQQEKN+Q+LL LDKW +LWTW IT WLWYIKIFI IVG Sbjct 643 WDREIDNYTHLIYTLIEESQNQQEKNQQELLQLDKWASLWTWSDITKWLWYIKIFIMIVG 702 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 GLIGLRI+FAVLSIVNRVRQGYSPLSFQTL PNPRGPDR G EE GGE+ RD S RLV Sbjct 703 GLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPNPRGPDRPEGTEEGGGERGRDGSTRLVH 762 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLAL WDDLRSLCLFSYHRLRDL+LI AR VELLGR RGWE+LKY L+QYW Sbjct 763 GFLALVWDDLRSLCLFSYHRLRDLLLIVARIVELLGR-------RGWEVLKYWWNLLQYW 815 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 S ELK SA+SL + AIAVAEGTDR+IEV+Q I+RA +IPRRIRQGFE AL Sbjct 816 SQELKNSAVSLVNVTAIAVAEGTDRVIEVVQRIYRAFLHIPRRIRQGFERAL 867 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 M:B_89.6] Sequence ID: Q73372.2 Length: 853 Range 1: 509 to 852 Score:506 bits(1304), Expect:1e-173, Method:Compositional matrix adjust., Identities:270/351(77%), Positives:298/351(84%), Gaps:7/351(1%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVGIGAVFLGFLGAAGSTMGAAS+TLTVQ R LLSGIVQQQ+NLLRAIEAQQHMLQLTVW Sbjct 509 AVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHMLQLTVW 568 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GIKQLQ RVLA+ERYLRDQQL+GIWGCSGKLICTT+VPWN SWSN+S +DIWNNMTWM+W Sbjct 569 GIKQLQARVLALERYLRDQQLMGIWGCSGKLICTTSVPWNVSWSNKSVDDIWNNMTWMEW 628 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 +REI NYT+ IY LLE SQ QQEKNE++LL LDKW +LW WF ITNWLWYI++FI IVGG Sbjct 629 EREIDNYTDYIYDLLEKSQTQQEKNEKELLELDKWASLWNWFDITNWLWYIRLFIMIVGG 688 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 LIGLRI+FAVLSIVNRVRQGYSPLSFQTL P RGPDR G EEEGGE+DRDRS LV+G Sbjct 689 LIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPASRGPDRPEGTEEEGGERDRDRSGPLVNG 748 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FLAL W DLR+LCLF YH LR+L+LI R VELLGR RGWE LKY L+QYWS Sbjct 749 FLALFWVDLRNLCLFLYHLLRNLLLIVTRIVELLGR-------RGWEALKYWWNLLQYWS 801 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA+SL + AIAVAEGTDR+I+++Q RAI NIP RIRQG E AL Sbjct 802 QELKNSAVSLLNATAIAVAEGTDRVIKIVQRACRAIRNIPTRIRQGLERAL 852 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [SIVcpz EK505] Sequence ID: Q1A243.1 Length: 835 Range 1: 483 to 834 Score:449 bits(1156), Expect:2e-151, Method:Compositional matrix adjust., Identities:232/352(66%), Positives:277/352(78%), Gaps:1/352(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A G+GA+FLGFLGAAGSTMGAASITLTVQ R+LLSGIVQQQ+NLLRAIEAQQH+LQL+VW Sbjct 483 AFGLGALFLGFLGAAGSTMGAASITLTVQARKLLSGIVQQQNNLLRAIEAQQHLLQLSVW 542 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQED-IWNNMTWMQ 119 GIKQLQ RVLAIERYLRDQQ+LG+WGCSGK +C T VPWN++WSN + D IW NMTW Sbjct 543 GIKQLQARVLAIERYLRDQQILGLWGCSGKSVCYTNVPWNTTWSNNNSYDTIWGNMTWQN 602 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 WD ++ NY+ I+ LLE +Q QQ NE+ LL LD+W +LW WF IT WLWYIKIFI +V Sbjct 603 WDEQVRNYSGVIFGLLEQAQEQQSINEKSLLELDQWSSLWNWFDITKWLWYIKIFIMVVA 662 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 G++G+RII ++S+V RVRQGYSPLS QTL P RGPDR EE+ GE D RS+RLVS Sbjct 663 GIVGIRIISIIMSMVARVRQGYSPLSLQTLIPTTRGPDRPERTEEDAGELDNGRSVRLVS 722 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFLALAW+D R+L LF YHRL D + I R +ELL ++ +G+Q E+ YL G++ YW Sbjct 723 GFLALAWEDFRNLLLFLYHRLTDCLSILRRTLELLRQNIHKGLQLLNELRIYLWGIIAYW 782 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAI+L DT A+AVAEGTDRIIE++Q I R I +IPRRIRQG E AL Sbjct 783 GRELKISAINLLDTTAVAVAEGTDRIIELVQRIGRGILHIPRRIRQGLERAL 834 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 N_YBF30] Sequence ID: O91086.1 Length: 842 Range 1: 490 to 841 Score:446 bits(1148), Expect:3e-150, Method:Compositional matrix adjust., Identities:231/352(66%), Positives:275/352(78%), Gaps:1/352(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A G+GA+FLGFLGAAGSTMGAASITLTVQ R LLSGIVQQQ+ LLRAIEAQQH+LQL++W Sbjct 490 AFGLGALFLGFLGAAGSTMGAASITLTVQARTLLSGIVQQQNILLRAIEAQQHLLQLSIW 549 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQED-IWNNMTWMQ 119 GIKQLQ +VLAIERYLRDQQ+L +WGCSGK IC T VPWN +WSN + D IWNN+TW Q Sbjct 550 GIKQLQAKVLAIERYLRDQQILSLWGCSGKTICYTTVPWNETWSNNTSYDTIWNNLTWQQ 609 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 WD ++ NY+ I+ L+E +Q QQ NE+ LL LD+W +LW+WFGIT WLWYIKI I IV Sbjct 610 WDEKVRNYSGVIFGLIEQAQEQQNTNEKSLLELDQWDSLWSWFGITKWLWYIKIAIMIVA 669 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 G++G+RII V++I+ RVRQGYSPLS QTL P RGPDR E GEQDR RS+RLVS Sbjct 670 GIVGIRIISIVITIIARVRQGYSPLSLQTLIPTARGPDRPEETEGGVGEQDRGRSVRLVS 729 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GF AL W+DLR+L +F YHRL D +LI R +ELLG+S RG+Q E+ +L G++ YW Sbjct 730 GFSALVWEDLRNLLIFLYHRLTDSLLILRRTLELLGQSLSRGLQLLNELRTHLWGILAYW 789 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 EL+ SAISL +T AI VAEGTDRIIE+ Q I R I +IPRRIRQG E AL Sbjct 790 GKELRDSAISLLNTTAIVVAEGTDRIIELAQRIGRGILHIPRRIRQGLERAL 841 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [SIVcpz GAB1] Sequence ID: P17281.1 Length: 854 Range 1: 502 to 853 Score:427 bits(1099), Expect:9e-143, Method:Compositional matrix adjust., Identities:230/352(65%), Positives:273/352(77%), Gaps:1/352(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A G+GA+FLGFLGAAGSTMGAA++TLTVQ RQLLSGIVQQQ+NLL+AIEAQQH+LQL++W Sbjct 502 AFGLGALFLGFLGAAGSTMGAAAVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLSIW 561 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWS-NRSQEDIWNNMTWMQ 119 G+KQLQ R+LA+ERYL+DQQ+LG+WGCSGK +C T VPWN+SW + S +DIW N+TW Q Sbjct 562 GVKQLQARLLAVERYLQDQQILGLWGCSGKAVCYTTVPWNNSWPGSNSTDDIWGNLTWQQ 621 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 WD+ +SNYT I+ LLE++Q+QQEKNE+DLL LD+W +LW WF IT WLWYIKIF+ VG Sbjct 622 WDKLVSNYTGKIFGLLEEAQSQQEKNERDLLELDQWASLWNWFDITKWLWYIKIFLMAVG 681 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 G+IGLRII V S+V RVRQGYSPLS QTL P R RLG I+E GGEQDR RS+RLV Sbjct 682 GIIGLRIIMTVFSVVRRVRQGYSPLSLQTLIPVQREQGRLGEIDEGGGEQDRSRSVRLVE 741 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 G L L WDDLR+L ++SY L L R ++ LG L ++ E L LGG++QYW Sbjct 742 GCLPLIWDDLRNLGIWSYQSLTSLACNVWRQLKTLGHLILHSLRLLRERLCLLGGIIQYW 801 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SAISL D AIAVAEGTDRIIE Q R I NIPRRIRQG E AL Sbjct 802 GKELKISAISLLDATAIAVAEGTDRIIEAFQVTLRIIRNIPRRIRQGLERAL 853 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 N_YBF106] Sequence ID: Q9IDV2.1 Length: 836 Range 1: 483 to 835 Score:425 bits(1093), Expect:5e-142, Method:Compositional matrix adjust., Identities:230/353(65%), Positives:274/353(77%), Gaps:2/353(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 A G+GA+FLGFLGAAGSTMGAASITLTVQ R LLSGIVQQQ+NLLRAIEAQQH+LQL++W Sbjct 483 AFGLGALFLGFLGAAGSTMGAASITLTVQARTLLSGIVQQQNNLLRAIEAQQHLLQLSIW 542 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSW-SNRSQEDIWNNMTWMQ 119 GIKQL+ +VLAIERYLRDQQ+L +WGCSGK IC T VPWN +W SN S + IW N+TW Q Sbjct 543 GIKQLRAKVLAIERYLRDQQILSLWGCSGKTICYTTVPWNDTWSSNTSYDTIWXNLTWQQ 602 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 WDR++ NY+ I+ L+E +Q QQ NE+ LL LD+W +LW WF IT WLWYIKI I +V Sbjct 603 WDRKVRNYSGVIFDLIEQAQEQQNTNEKALLELDQWASLWNWFDITKWLWYIKIAIMVVA 662 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPN-PRGPDRLGGIEEEGGEQDRDRSIRLV 238 G+IG+RII A+++I+ RVRQGYSPLS QTL P RGPDR EE G QDR RS+RLV Sbjct 663 GIIGIRIISAIITIIARVRQGYSPLSLQTLIPTAARGPDRPEETEEGVGGQDRGRSVRLV 722 Query 239 SGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQY 298 SGFLAL W+DLR+L +F YHRL D +LI R +E+LG+S RG+Q E+ L G++ Y Sbjct 723 SGFLALIWEDLRNLLIFLYHRLADSLLIIRRTLEILGQSLSRGLQLLNELRIRLWGIIAY 782 Query 299 WSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 W ELK SAISL +T AI VAEGTDR IE+ Q I R I +IPRRIRQG E AL Sbjct 783 WGKELKDSAISLLNTTAIVVAEGTDRFIELAQRIGRGILHIPRRIRQGLERAL 835 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 O_MVP5180] Sequence ID: Q79670.1 Length: 876 Range 1: 524 to 875 Score:338 bits(866), Expect:6e-108, Method:Compositional matrix adjust., Identities:182/352(52%), Positives:243/352(69%), Gaps:1/352(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+G +FLG L AAGSTMGAA+ LTV+ +L GIVQQQ NLLRAI+AQQH+L+L+VW Sbjct 524 AVGLGMLFLGVLSAAGSTMGAAATALTVRTHSVLKGIVQQQDNLLRAIQAQQHLLRLSVW 583 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQED-IWNNMTWMQ 119 GI+QL+ R+ A+E +++QQ L +WGC GKLIC T+V WN+SWS R +D IW+N+TW Q Sbjct 584 GIRQLRARLQALETLIQNQQRLNLWGCKGKLICYTSVKWNTSWSGRYNDDSIWDNLTWQQ 643 Query 120 WDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVG 179 WD+ I+N ++ IY ++ +Q+QQEKN + LL LD+W +LW WF IT WLWYIKI I IVG Sbjct 644 WDQHINNVSSIIYDEIQAAQDQQEKNVKALLELDEWASLWNWFDITKWLWYIKIAIIIVG 703 Query 180 GLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 LIG+R+I +L++V +RQGY PLS Q P+ + + G EEGGE DR + L Sbjct 704 ALIGIRVIMIILNLVKNIRQGYQPLSLQIPVPHRQEAETPGRTGEEGGEGDRPKWTALPP 763 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 GFL + DLR++ L++YH L +LI R ++ LG Q+ E + G ++QYW Sbjct 764 GFLQQLYTDLRTIILWTYHLLSNLISGIRRLIDYLGLGLWILGQKTIEACRLCGAVMQYW 823 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ELK SA +L DTIA++VA TD II +Q I + +IPRRIRQG E L Sbjct 824 LQELKNSATNLLDTIAVSVANWTDGIILGLQRIGQGFLHIPRRIRQGAERIL 875 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [SIVcpz TAN1] Sequence ID: Q8AIH5.1 Length: 871 Range 1: 504 to 871 Score:325 bits(834), Expect:3e-103, Method:Compositional matrix adjust., Identities:186/377(49%), Positives:242/377(64%), Gaps:35/377(9%) Query 2 VGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWG 61 VGIG +FLGFL AAGSTMGAASI LT Q R LLSGIVQQQ NLL+AIEAQQH+LQL+VWG Sbjct 504 VGIGLLFLGFLSAAGSTMGAASIALTAQARGLLSGIVQQQQNLLQAIEAQQHLLQLSVWG 563 Query 62 IKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQ----------EDI 111 IKQLQ R+LA+E+Y+RDQQLL +WGC+ KL+C ++VPWN +W+ S + I Sbjct 564 IKQLQARMLAVEKYIRDQQLLSLWGCANKLVCHSSVPWNLTWAEDSTKCNHSDAKYYDCI 623 Query 112 WNNMTWMQWDREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYI 171 WNN+TW +WDR + N T TIY LLE +Q QQEKN+Q+LL LDKW +LW WF IT WLWYI Sbjct 624 WNNLTWQEWDRLVENSTGTIYSLLEKAQTQQEKNKQELLELDKWSSLWDWFDITQWLWYI 683 Query 172 KIFIKIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDR 231 KI I IV GL+GLRI+ ++++V +VRQGY+PL Q T + P++ GGI GG +D Sbjct 684 KIAIIIVAGLVGLRILMFIVNVVKQVRQGYTPLFSQIPTQAEQDPEQPGGIAGGGGGRDN 743 Query 232 DRSIRLVSGFLALAWDDLRSLCLFSYHRLRDLILI--------------AARAVELLGRS 277 R +GF ++ W+DLR+L ++ Y ++ I I A ++ ++ R+ Sbjct 744 IRWTPSPAGFFSIVWEDLRNLLIWIYQTFQNFIWILWISLQALKQGIISLAHSLVIVHRT 803 Query 278 SLRGIQR--GWEILKYLGGLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRA 335 + G+++ W Y L+ I D +A TD IIE + I R Sbjct 804 IIVGVRQIIEWSSNTYAS---------LRVLLIQAIDRLANFTGWWTDLIIEGVVYIARG 854 Query 336 ICNIPRRIRQGFEAALQ 352 I NIPRRIRQG E AL Sbjct 855 IRNIPRRIRQGLELALN 871 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-1 O_ANT70] Sequence ID: Q77377.1 Length: 863 Range 1: 514 to 862 Score:302 bits(774), Expect:2e-94, Method:Compositional matrix adjust., Identities:177/351(50%), Positives:231/351(65%), Gaps:2/351(0%) Query 1 AVGIGAVFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVW 60 AVG+G +FLG L AAGSTMGAA+ TL VQ LL GIVQQQ NLLRAI+AQQ +L+L+ W Sbjct 514 AVGLGMLFLGVLSAAGSTMGAAATTLAVQTHTLLKGIVQQQDNLLRAIQAQQQLLRLSXW 573 Query 61 GIKQLQTRVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQW 120 GI+QL+ R+LA+E L++QQLL +WGC GKL+C T+V WN +W E IW+ +TW +W Sbjct 574 GIRQLRARLLALETLLQNQQLLSLWGCKGKLVCYTSVKWNRTWI--GNESIWDTLTWQEW 631 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGG 180 DR+ISN ++TIY ++ +Q QQE+NE+ LL LD+W ++W W IT WLWYIKI I IVG Sbjct 632 DRQISNISSTIYEEIQKAQVQQEQNEKKLLELDEWASIWNWLDITKWLWYIKIAIIIVGA 691 Query 181 LIGLRIIFAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 L+G+R+I VL+IV +RQGY PLS Q + G GGE+ R R I G Sbjct 692 LVGVRVIMIVLNIVKNIRQGYQPLSLQIPNHHQEEAGTPGRTGGGGGEEGRPRWIPSPQG 751 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 FL L + DLR++ L++YH L +L + + L Q+ + + + QYW Sbjct 752 FLPLLYTDLRTIILWTYHLLSNLASGIQKVISYLRLGLWILGQKIINVCRICAAVTQYWL 811 Query 301 LELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 EL+ SA SL DT+A+AVA TD II IQ I I NIPRRIRQG E +L Sbjct 812 QELQNSATSLLDTLAVAVANWTDGIIAGIQRIGTGIRNIPRRIRQGLERSL 862 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (AGM3 ISOLATE)] Sequence ID: P27977.1 Length: 877 Range 1: 550 to 877 Score:204 bits(520), Expect:4e-58, Method:Compositional matrix adjust., Identities:143/347(41%), Positives:195/347(56%), Gaps:21/347(6%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFLGAAG+ MGAA+ LTVQ + LL+GI+QQQ NLL A+EAQQ ML+LT+WG+K L Sbjct 550 FLGFLGAAGTAMGAAATALTVQSQHLLAGILQQQKNLLAAVEAQQQMLKLTIWGVKNLNA 609 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV A+E+YL DQ L WGC+ K +C T VPW W+NR+ + WNNMTW++W+R+IS Sbjct 610 RVTALEKYLEDQARLNAWGCAWKQVCHTTVPW--QWNNRTPD--WNNMTWLEWERQISYL 665 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LE+++ Q+EKN L W + W+WF + WL +KI V G+IGLR++ Sbjct 666 EGNITTQLEEARAQEEKNLDAYQKLSSWSDFWSWFDFSKWLNILKIGFLDVLGIIGLRLL 725 Query 188 FAVLSIVNRVRQGYSPLSFQ-TLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSGFLALAW 246 + V S + RVRQGYSPLS Q + P PD G EGG++ ++ S W Sbjct 726 YTVYSCIARVRQGYSPLSPQIHIHPWKGQPDNAEG-PGEGGDKRKNSSEPWQKESGTAEW 784 Query 247 DDLRSLCLFSYHRLRDLILIAARAVELLG-RSSLRGIQRGWEILKYLGGLVQYWSLELKK 305 L ++ + + L + L+ RS+ + IQ G LG ELK Sbjct 785 KSNWCKRLTNWCSISSIWLYNSCLTLLVHLRSAFQYIQYG------LG--------ELKA 830 Query 306 SAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAALQ 352 +A +A +I + +RAI N PRR+RQG E L Sbjct 831 AAQEAVVALARLAQNAGYQIWLACRSAYRAIINSPRRVRQGLEGILN 877 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (TYO-1 ISOLATE)] Sequence ID: P05886.1 Length: 865 Range 1: 543 to 864 Score:204 bits(518), Expect:7e-58, Method:Compositional matrix adjust., Identities:139/345(40%), Positives:193/345(55%), Gaps:24/345(6%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFLGAAG+ MGAA+ +LTVQ R LL+GI+QQQ NLL A+EAQQ ML+LT+WG+K L Sbjct 543 FLGFLGAAGTAMGAAASSLTVQSRHLLAGILQQQKNLLAAVEAQQQMLKLTIWGVKNLNA 602 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV A+E+YL DQ L WGC+ K +C T V W W+NR+ + W NMTW++W+R+I++ Sbjct 603 RVTALEKYLEDQARLNSWGCAWKQVCHTTVEW--PWTNRTPD--WQNMTWLEWERQIADL 658 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 + I L ++ Q+EKN L W + W+WF + WL +K+ ++ G+IGLR++ Sbjct 659 ESNITGQLVKAREQEEKNLDAYQKLTSWSDFWSWFDFSKWLNILKMGFLVIVGIIGLRLL 718 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSGFLALAW- 246 + V + RVRQGY PLS Q + + G R +E G D R I+L S W Sbjct 719 YTVYGCIVRVRQGYVPLSPQ-IHIHQVGKGRPDNADEPGEGGDNSR-IKLES------WX 770 Query 247 DDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWSLELKKS 306 D +S C+ L R L S L + + + +YL QY ELK Sbjct 771 KDSKSRCM-------QLTAWLTRLNTWLYNSCLTLLIQLRKAFQYL----QYGLAELKTG 819 Query 307 AISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 A + T+A +I + +R I N PRR+RQG E L Sbjct 820 AQEILQTLAGVAQNACHQIWLACRSAYRNIVNSPRRVRQGLEEIL 864 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (isolate AGM / clone GRI-1)] Sequence ID: Q02837.1 Length: 854 Range 1: 529 to 853 Score:202 bits(515), Expect:2e-57, Method:Compositional matrix adjust., Identities:133/349(38%), Positives:199/349(57%), Gaps:29/349(8%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFLGAAG+ MGAA+ TLTVQ R LL+GI+QQQ NLL A+E QQ +L+LT+WG+K L Sbjct 529 FLGFLGAAGTAMGAAATTLTVQSRHLLAGILQQQKNLLAAVEQQQQLLKLTIWGVKNLNA 588 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV A+E+YL DQ L WGC+ K +C T VPW ++N + W+NMTW++W+R+I+ Sbjct 589 RVTALEKYLEDQARLNSWGCAWKQVCHTTVPW--KYNNTPK---WDNMTWLEWERQINAL 643 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I +LLE++QNQ+ KN LD W W+WF ++ WL Y+KI ++ ++GLR Sbjct 644 EGNITQLLEEAQNQESKNLDLYQKLDDWSGFWSWFSLSTWLGYVKIGFLVIVIILGLRFA 703 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSGFLALA-- 245 + + + +RQGY+PL + + PD GG ++ GGE + IRL + Sbjct 704 WVLWGCIRNIRQGYNPLPQIHIHSSAERPDNGGG-QDRGGESSSSKLIRLQEESSTPSRI 762 Query 246 ---WDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWSLE 302 W + +S L R+R + + R+++ G +QY + Sbjct 763 NNWWLNFKSCSL----RIRTWCYNICLTLLIFIRTAV--------------GYLQYGLQQ 804 Query 303 LKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 L+++A L +A A E R+ +++ +RA+ N PRR+RQG E L Sbjct 805 LQEAATGLAQALARAAREAWGRLGAIVRSAYRAVINSPRRVRQGLEKVL 853 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-2 B_UC1] Sequence ID: Q76638.1 Length: 857 Range 1: 521 to 856 Score:201 bits(511), Expect:6e-57, Method:Compositional matrix adjust., Identities:134/359(37%), Positives:194/359(54%), Gaps:38/359(10%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLG L AGS MGA S+TL+ Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 521 FLGLLAMAGSAMGATSLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQT 580 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ LL WGC+ + +C T VP W N + W NMTW QW++ ++ Sbjct 581 RVTAIEKYLKDQALLNSWGCAFRQVCHTTVP----WPNETLTPDWENMTWQQWEKRVNFL 636 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LLE++Q QQE+N +L L+ W WF T+W+ YI++ + +V GLI LRI+ Sbjct 637 DANITALLEEAQIQQERNMYELQKLNSWDVFGNWFDFTSWMAYIRLGLYVVAGLIVLRIV 696 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTP--NPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 ++ ++ R+R+GY SP S+ P RG E+EGG + RS Sbjct 697 IYIMQMLARLRKGYRPVFSSPPSYTQQIPIRKHRGQPANEETEDEGGNEGAYRSWPWQIE 756 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYWS 300 + LR+L ++ Y+ R+L+L ++ ++ +L+ ++ L+Y Sbjct 757 YAHFLIRQLRNLLIWLYNGCRNLLLKTSQILQ----PALQPLRLSLAYLQY--------- 803 Query 301 LELKKSAISLF-DTIAIAVAEGTDRIIEVIQGIWR-------AICNIPRRIRQGFEAAL 351 IS F + I A + + + +W+ AI IPRRIRQG E AL Sbjct 804 ------GISWFQEAIQAATRAARETLANTGRALWKALRRTAEAIIAIPRRIRQGLELAL 856 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P12492.1 Length: 885 Range 1: 538 to 884 Score:195 bits(496), Expect:1e-54, Method:Compositional matrix adjust., Identities:131/358(37%), Positives:194/358(54%), Gaps:25/358(6%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+TL+ Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 538 FLGFLATAGSAMGAASVTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQT 597 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N + WNNMTW +W+R++ Sbjct 598 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WPNETLVPNWNNMTWQEWERQVDFL 653 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I +LLE++Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+IGLRI+ Sbjct 654 EANITQLLEEAQIQQEKNMYELQKLNSWDIFGNWFDLTSWIRYIQYGVLIVLGVIGLRIV 713 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG------- 240 V+ ++ R+RQGY P+ F + P + I G++ + G Sbjct 714 IYVVQMLARLRQGYRPV-FSS------PPAYVQQIPIHKGQEPPTKEGEEGDGGDRGGSR 766 Query 241 -------FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLG 293 ++ L L + + RD +L + + ++ + +S +QR E+++ Sbjct 767 SWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLRSYQILQPVLQSLSTTLQRVREVIRIEI 826 Query 294 GLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 +QY +++ + + +A I E + + R I IPRRIRQG E L Sbjct 827 AYLQYGWRYFQEAVQAWWKLARETLASAWGDIWETLGRVGRGILAIPRRIRQGLELTL 884 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE D194)] Sequence ID: P17755.2 Length: 851 Range 1: 508 to 850 Score:193 bits(491), Expect:4e-54, Method:Compositional matrix adjust., Identities:145/362(40%), Positives:188/362(51%), Gaps:37/362(10%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MG AS+TL+ Q R LL+GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 508 FLGFLATAGSAMGGASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 567 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N S WNNMTW +W++ + Sbjct 568 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WVNDSLTPDWNNMTWQEWEKRVHYL 623 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE +Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+IGLRI Sbjct 624 EANISQSLEQAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGVYIVVGIIGLRIA 683 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRG--------PDRLGGIEEEGGEQDRDRSIRLVS 239 ++ +++R+R+GY P+ F + P G DR EE E D S Sbjct 684 IYIVQLLSRLRKGYRPV-FSS----PPGYLQQIHIHTDRGQPANEETEEDAGDD-----S 733 Query 240 GFLALAW---------DDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILK 290 GF W L L Y+ R L+ + L+ + SL I R W LK Sbjct 734 GFGLWPWPLNYIQFLIHLLTRLLTGLYNSCRGLLSKNSPTRRLISQ-SLTAI-RDWLRLK 791 Query 291 YLGGLVQYWSLELKKSAISLFDTIAIAVAEGTDR-IIEVIQGIWRAICNIPRRIRQGFEA 349 +QY E + A F A G R + E Q I R I +PRRIRQG E Sbjct 792 --AAYLQY-GCEWIQEAFRAFARTARETIAGAWRGLCEAAQRIGRGILAVPRRIRQGAEI 848 Query 350 AL 351 AL Sbjct 849 AL 850 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)] Sequence ID: P19503.1 Length: 889 Range 1: 542 to 888 Score:193 bits(491), Expect:5e-54, Method:Compositional matrix adjust., Identities:130/358(36%), Positives:197/358(55%), Gaps:25/358(6%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS M AAS+TL+ Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 542 FLGFLATAGSAMSAASVTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGAKNLQT 601 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP N + WNNMTW +W+++++ Sbjct 602 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----RPNDTLTPNWNNMTWQEWEKQVNFL 657 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE++Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+IGLRI+ Sbjct 658 EANITQSLEEAQIQQEKNTYELQKLNSWDIFGNWFDLTSWIKYIQYGVLIVLGVIGLRIV 717 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQ--------------DRDR 233 V+ ++ R+RQGY P+ F + P + I + G++ +R Sbjct 718 IYVVQMLARLRQGYRPV-FSS------PPAYVQQIPIQTGQELPTKEGEEGDGGGRGGNR 770 Query 234 SIRLVSGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLG 293 S ++ L L + + RD +L + ++ + +S R +QR E+++ Sbjct 771 SWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLRNCQTLQPVLQSLSRTLQRAREVIRVQI 830 Query 294 GLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 +QY L+++A + + + +A + E + + R I IPRRIRQG E L Sbjct 831 AYLQYGWRYLQEAAQAWWKFVRETLASAWRDLWETLGRVGRGILAIPRRIRQGLELTL 888 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [HIV-2 B_EHO] Sequence ID: Q89607.1 Length: 852 Range 1: 516 to 851 Score:192 bits(489), Expect:7e-54, Method:Compositional matrix adjust., Identities:134/354(38%), Positives:188/354(53%), Gaps:28/354(7%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+TL+ Q R LL+GIVQQQ L+ ++ QQ +L+LTVWG K LQ Sbjct 516 FLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLVDVVKRQQELLRLTVWGTKNLQA 575 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N S + WNNMTW QW+R++ Sbjct 576 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WVNESLKPDWNNMTWQQWERQVRFL 631 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I +LLE++Q QQEKN +L L++W WF T+W+ YI++ + IV G++ LRI Sbjct 632 DANITKLLEEAQIQQEKNMYELQKLNQWDIFSNWFDFTSWMAYIRLGLYIVIGIVVLRIA 691 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTP--NPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 ++ ++ R+R+GY SP S+ P RG EE GG + RS Sbjct 692 IYIIQMLARLRKGYRPVFSSPPSYTQQIPIRKDRGQPANEETEEGGGNNEGYRS------ 745 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQY-- 298 W F +LRDL++ L + + +Q + L+ ++Y Sbjct 746 -----WPWQIEYIHFPIRQLRDLLIWLYSGCRTLLSKTFQTLQPVLQPLRLPPAYLRYGI 800 Query 299 -WSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 W E ++A + A + ++ G I IPRRIRQG E AL Sbjct 801 SWFQEAIQAAARAAGETLASAARTSWGVLRRAAG---EIIAIPRRIRQGAELAL 851 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE ROD)] Sequence ID: P04577.1 Length: 858 Range 1: 518 to 857 Score:190 bits(483), Expect:6e-53, Method:Compositional matrix adjust., Identities:132/354(37%), Positives:187/354(52%), Gaps:24/354(6%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+T++ Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQ Sbjct 518 FLGFLATAGSAMGAASLTVSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQA 577 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N S W+NMTW +W++++ Sbjct 578 RVTAIEKYLQDQARLNSWGCAFRQVCHTTVP----WVNDSLAPDWDNMTWQEWEKQVRYL 633 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE +Q QQEKN +L L+ W WF +T+W+ YI+ + I+ +I LRI+ Sbjct 634 EANISKSLEQAQIQQEKNMYELQKLNSWDIFGNWFDLTSWVKYIQYGVLIIVAVIALRIV 693 Query 188 FAVLSIVNRVRQGYSPLSF-------QTLTPNPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 V+ +++R+R+GY P+ Q RG EE+GG DR Sbjct 694 IYVVQMLSRLRKGYRPVFSSPPGYIQQIHIHKDRGQPANEETEEDGGSNGGDRYWPWPIA 753 Query 241 FLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQY-- 298 ++ L L Y RDL+ + ++L+ ++ R W L+ +QY Sbjct 754 YIHFLIRQLIRLLTRLYSICRDLLSRSFLTLQLIYQN-----LRDW--LRLRTAFLQYGC 806 Query 299 -WSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 W E ++A G R++E I R I +PRRIRQG E AL Sbjct 807 EWIQEAFQAAARATRETLAGACRGLWRVLERIG---RGILAVPRRIRQGAEIAL 857 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE BEN)] Sequence ID: P18094.1 Length: 860 Range 1: 517 to 859 Score:189 bits(481), Expect:9e-53, Method:Compositional matrix adjust., Identities:139/355(39%), Positives:191/355(53%), Gaps:23/355(6%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGA S+TL+ Q R LL+GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 517 FLGFLATAGSAMGARSLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 576 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+ Q L WGC+ + +C T VP W N S W NMTW +W++++ Sbjct 577 RVTAIEKYLKHQAQLNSWGCAFRQVCHTTVP----WVNDSLSPDWKNMTWQEWEKQVRYL 632 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE++Q QQEKN +L L+ W L WF +T+W+ YI+ + IV G+I LRI Sbjct 633 EANISQSLEEAQIQQEKNMYELQKLNSWDILGNWFDLTSWVKYIQYGVHIVVGIIALRIA 692 Query 188 FAVLSIVNRVRQGYSPLSF-------QTLTPNPRG-PDRLGGIEEEGGEQDRDR---SIR 236 V+ +++R R+GY P+ Q RG P G E+ GG+ D I Sbjct 693 IYVVQLLSRFRKGYRPVFSSPPGYLQQIHIHKDRGQPANEGTEEDVGGDSGYDLWPWPIN 752 Query 237 LVSGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLV 296 V + L L L + Y+ RDL+ + L+ + SL I R W LK + Sbjct 753 YVQFLIHL----LTRLLIGLYNICRDLLSKNSPTRRLISQ-SLTAI-RDWLRLK--AAQL 804 Query 297 QYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 QY ++++ + T +A + E + I R I +PRRIRQG E AL Sbjct 805 QYGCEWIQEAFQAFARTTRETLAGAWGWLWEAARRIGRGILAVPRRIRQGAELAL 859 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (AGM155 ISOLATE)] Sequence ID: P27757.1 Length: 768 Range 1: 545 to 768 Score:187 bits(474), Expect:5e-52, Method:Compositional matrix adjust., Identities:107/229(47%), Positives:146/229(63%), Gaps:5/229(2%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFLGAAG+ MGAA+ LTVQ + LL+GI+QQQ NLL A+ AQQ ML+LT+WG+K L Sbjct 545 FLGFLGAAGTAMGAAATALTVQSQHLLAGILQQQKNLLAAVGAQQQMLKLTIWGVKNLNA 604 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV A+E+YL DQ L WGC+ K +C T VPW +W+N + WNNMTW++W+++I Sbjct 605 RVTALEKYLADQARLNAWGCAWKQVCHTTVPW--TWNNTPE---WNNMTWLEWEKQIEGL 659 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE ++ Q+EKN L W + W+WF + WL +KI V G+IGLR++ Sbjct 660 EGNITKQLEQAREQEEKNLDAYQKLSDWSSFWSWFDFSKWLNILKIGFLAVIGVIGLRLL 719 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRSIR 236 + + + + RVRQGYSPLS Q +G G EEGG + +S Sbjct 720 YTLYTCIARVRQGYSPLSPQIHIHPWKGQPDNAGEPEEGGRTGKSKSTH 768 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (MM142-83 ISOLATE)] Sequence ID: P05885.1 Length: 882 Range 1: 535 to 881 Score:184 bits(468), Expect:6e-51, Method:Compositional matrix adjust., Identities:136/365(37%), Positives:192/365(52%), Gaps:39/365(10%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+T+T Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 535 FLGFLATAGSAMGAASLTVTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQT 594 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N S WNN TW +W+R++ Sbjct 595 RVSAIEKYLKDQAQLNAWGCAFRQVCHTTVP----WPNASLTPDWNNETWQEWERKVDFL 650 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LLE++Q QQEKN +L L+ W WF +T+W+ YI+ I I+ G+I LRI+ Sbjct 651 EANITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGIYIIVGVILLRIV 710 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRS-------- 234 ++ ++ R+RQGY SP S+ T + P ++G + Sbjct 711 IYIVQMLARLRQGYRPVFSSPPSYFQXTHTQQDPALPTKEGKKGDGGGSGGNSSWPWQIE 770 Query 235 -----IRLVSGFLALAWDDLRSLCLFSYHRLRDL---ILIAARAVELLGRSSLRGIQRGW 286 IR + L + + R+L +Y L+ + + R + + R L +Q GW Sbjct 771 YIHFLIRQLIRLLTWLFSNCRTLLSRAYQILQPIFQRLSATLRRIREVLRLELTYLQYGW 830 Query 287 EILKYLGGLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQG 346 Y+ ++ + S +T+A A E + E +Q R I IPRRIRQG Sbjct 831 S----------YFQEAVQAAQRSATETLAGAWGE----LWEALQRGGRWILAIPRRIRQG 876 Query 347 FEAAL 351 E L Sbjct 877 LELTL 881 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE D205,7)] Sequence ID: P15831.2 Length: 859 Range 1: 520 to 780 Score:184 bits(467), Expect:7e-51, Method:Compositional matrix adjust., Identities:110/265(42%), Positives:154/265(58%), Gaps:11/265(4%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGA S+TL+ Q R LL+GIVQQQ + ++ QQ +L+LTVWG K LQ Sbjct 520 FLGFLAMAGSAMGATSLTLSAQSRTLLAGIVQQQQQPVDVVKRQQELLRLTVWGTKNLQA 579 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N + WNNMTW QW++++ Sbjct 580 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WPNETLTPNWNNMTWQQWEKQVHFL 635 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LLE++Q QQEKN +L ++ W WF +T+W+ YI + + IV GL+ LRI+ Sbjct 636 DANITALLEEAQIQQEKNMYELQKINSWDVFGNWFDLTSWIKYIHLGLYIVAGLVVLRIV 695 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTP--NPRGPDRLGGIEEEGGEQDRDRSIRLVSG 240 ++ ++ R+R+GY SP S+ P RG EE GG RS Sbjct 696 VYIVQMLARLRKGYRPVFSSPPSYTQQIPIRKDRGQPANEETEEGGGNDGDYRSWPWQIE 755 Query 241 FLALAWDDLRSLCLFSYHRLRDLIL 265 ++ LR+L ++ Y+ R L+L Sbjct 756 YIHFLLRQLRNLLIWLYNGCRTLLL 780 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE NIH-Z)] Sequence ID: P05883.1 Length: 856 Range 1: 509 to 855 Score:184 bits(466), Expect:1e-50, Method:Compositional matrix adjust., Identities:129/353(37%), Positives:193/353(54%), Gaps:15/353(4%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+TL+ Q R LL+GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 509 FLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 568 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T+VP W N + WNNMTW +W++++ Sbjct 569 RVTAIEKYLKDQAQLNSWGCAFRQVCHTSVP----WVNDTLTPDWNNMTWQEWEQKVRYL 624 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE +Q QQEKN +L L+ W W T+W+ YI+ + +V G++ LRI+ Sbjct 625 EANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWLDFTSWVRYIQYGVYVVVGIVALRIV 684 Query 188 FAVLSIVNRVRQGYSPLSFQT---------LTPNPRGPDRLGGIEEEGGEQDRDRSIRLV 238 ++ +++R+R+GY P+ F + + + P R EE+ G DRS Sbjct 685 IYIVQMLSRLRKGYRPV-FSSPPGYIQQIHIHKDQEQPAR-EETEEDVGSNGGDRSWPWP 742 Query 239 SGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQY 298 ++ L L Y+ RDL+ + ++ + +S R + + L+ +QY Sbjct 743 IAYIHFLIRLLIRLLTGLYNICRDLLSRISPILQPIFQSLQRALTAIRDWLRLKAAYLQY 802 Query 299 WSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ++++ +L T +A + +Q I R I +PRRIRQG E AL Sbjct 803 GCEWIQEAFQALARTTRETLAGAGRDLWRALQRIGRGILAVPRRIRQGAELAL 855 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (MM251 ISOLATE)] Sequence ID: P08810.2 Length: 881 Range 1: 534 to 880 Score:183 bits(464), Expect:2e-50, Method:Compositional matrix adjust., Identities:139/376(37%), Positives:186/376(49%), Gaps:61/376(16%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+TLT Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 534 FLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQT 593 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N S WNN TW +W+R++ Sbjct 594 RVTAIEKYLKDQAQLNAWGCAFRQVCHTTVP----WPNASLTPDWNNDTWQEWERKVDFL 649 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LLE++Q QQEKN +L L+ W WF + +W+ YI+ I +V G+I LRI+ Sbjct 650 EENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGIYVVVGVILLRIV 709 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTP---NPRGPDRLGGIEEEGGEQDRDR------ 233 ++ ++ ++RQGY SP S+ T +P P R G + G Sbjct 710 IYIVQMLAKLRQGYRPVFSSPPSYFQXTHTQQDPALPTREGKEGDGGEGGGNSSWPWQIE 769 Query 234 ----SIRLVSGFLALAWDDLRSLCLFSYHRLRDLI--LIAA-RAVELLGRSSLRGIQRGW 286 IR + L + + R+L +Y L+ ++ L A R V + R+ L +Q GW Sbjct 770 YIHFLIRQLIRLLTWLFSNCRTLLSRAYQILQPILQRLSATLRRVREVLRTELTYLQYGW 829 Query 287 EILKYLGGLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRA----------- 335 AV G E + G WR Sbjct 830 SYFHE-------------------------AVQAGWRSATETLAGAWRDLWETLRRGGRW 864 Query 336 ICNIPRRIRQGFEAAL 351 I IPRRIRQG E L Sbjct 865 ILAIPRRIRQGLELTL 880 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE CAM2)] Sequence ID: P24105.1 Length: 859 Range 1: 519 to 858 Score:182 bits(463), Expect:3e-50, Method:Compositional matrix adjust., Identities:130/352(37%), Positives:193/352(54%), Gaps:20/352(5%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AG MG AS+TL+ Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQ Sbjct 519 FLGFLTTAGVAMGTASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKILQA 578 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W+N S WNNMTW +W++++ Sbjct 579 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WANESLTPDWNNMTWQEWEQKVRYL 634 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE++Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+I LRI+ Sbjct 635 EANISQSLEEAQLQQEKNMYELQKLNNWDVFTNWFDLTSWISYIQYGVYIVVGIIVLRIV 694 Query 188 FAVLSIVNRVRQGYSPLSFQT--------LTPNPRGPDRLGGIEEEGGEQDRDRSIRLVS 239 V+ +++R+R+GY P+ + + +P P EE+ G DRS Sbjct 695 IYVVQMLSRLRKGYRPVFSSSPGYIQQIHIHKDPEQPAS-EETEEDVGGNGGDRSWPWQI 753 Query 240 GFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGLVQYW 299 ++ L L Y+ R+L+ +R + L + L+ + R W L+ +QY Sbjct 754 EYIHFLIRQLIRLLTGLYNICRNLL---SRIFQTL-QPILQNL-RDW--LRPKVAFLQYG 806 Query 300 SLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 ++++ + +A + ++Q I R I +PRRIRQG E AL Sbjct 807 CEWIQEAFQAAARAARETLAGACRDVWGMLQRIGRGILAVPRRIRQGAELAL 858 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (isolate KR)] Sequence ID: Q74126.1 Length: 857 Range 1: 511 to 856 Score:179 bits(454), Expect:5e-49, Method:Compositional matrix adjust., Identities:129/356(36%), Positives:186/356(52%), Gaps:23/356(6%) Query 9 LGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTR 68 LGFL AGS MGAAS+TL+ +GIVQQQ LL ++ QQ ML+LTVWG K LQTR Sbjct 511 LGFLATAGSAMGAASLTLSAHPGLYWAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQTR 570 Query 69 VLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNYT 128 V AIE+YLRDQ L WGC+ + +C T V W N S WNNMTW +W+++ + Sbjct 571 VTAIEKYLRDQARLNSWGCAFRQVCYTTV----LWENNSIVPDWNNMTWQEWEQQTRDLE 626 Query 129 NTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIF 188 I R LE +Q QQEKN +L L+ W WF +T+W+ YI+ + ++ G+I LRI+ Sbjct 627 ANISRSLEQAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGVYVIIGIIALRIVI 686 Query 189 AVLSIVNRVRQGYSPLSFQTLTPNPRG-------------PDRLGGIEEEGGEQDRDRSI 235 V+ +++R+R+GY P+ F + P G PDR +E+ G D S Sbjct 687 YVVQLLSRLRKGYRPV-FSS----PPGYIQQIHIHKDWEQPDR-EETDEDAGNSIGDSSW 740 Query 236 RLVSGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGL 295 ++ L L Y +DL+ + ++L+ +S R + + L+ Sbjct 741 PWPIAYIHFLIRQLIRLLTGLYSVCKDLLSRSFPTLQLIFQSLQRALTTIRDWLRLTIAY 800 Query 296 VQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 +QY +++ L T +A + + I R I +PRRIRQG E AL Sbjct 801 LQYGCEWIQEVLQVLARTTRETLASAWRDLWGAMGRIGRGILAVPRRIRQGAELAL 856 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus - mac K6W] Sequence ID: P05884.1 Length: 881 Range 1: 534 to 880 Score:178 bits(452), Expect:9e-49, Method:Compositional matrix adjust., Identities:137/365(38%), Positives:191/365(52%), Gaps:39/365(10%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS LT Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 534 FLGFLATAGSAMGAASFRLTAQSRTLLAGIVQQQQQLLGVVKRQQELLRLTVWGTKNLQT 593 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL DQ L WGC+ + +C T VP W N S WNN TW +W+R++ Sbjct 594 RVTAIEKYLEDQAQLNAWGCAFRQVCHTTVP----WPNASLTPDWNNDTWQEWERKVDFL 649 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LLE++Q QQEKN +L L+ W WF + +W+ YI+ I +V G+I LRI+ Sbjct 650 EENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGIYVVVGVILLRIV 709 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTP---NPRGPDRLGGIEEEGGEQDRDR------ 233 ++ ++ ++RQGY SP S+ T +P P R G + G Sbjct 710 IYIVQMLAKLRQGYRPVFSSPPSYFQXTHTQQDPALPTREGKEGDGGEGGGNSSWPWQIE 769 Query 234 ----SIRLVSGFLALAWDDLRSLCLFSYHRLRDLI--LIAA-RAVELLGRSSLRGIQRGW 286 IR + L + + R+L +Y L+ ++ L A R + + R+ L +Q GW Sbjct 770 YIHFLIRQLIRLLTWLFSNCRTLLSRAYQILQPILQRLSATLRRIREVLRTELTYLQYGW 829 Query 287 EILKYLGGLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQG 346 Y+ ++ S +T+A A + + E ++ R I IPRRIRQG Sbjct 830 S----------YFHEAVQAGWRSATETLAGAWGD----LWETLRRGGRWILAIPRRIRQG 875 Query 347 FEAAL 351 E L Sbjct 876 LELTL 880 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE ST)] Sequence ID: P20872.2 Length: 859 Range 1: 512 to 858 Score:176 bits(446), Expect:5e-48, Method:Compositional matrix adjust., Identities:137/363(38%), Positives:195/363(53%), Gaps:35/363(9%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AG+ MGAAS+TL+ Q R LL+GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 512 FLGFLTTAGAAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 571 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N + WNNMTW +W++ I N Sbjct 572 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WVNDTLTPDWNNMTWQEWEQRIRNL 627 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LE +Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+I LRI+ Sbjct 628 EANISESLEQAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGVYIVVGIIVLRIV 687 Query 188 FAVLSIVNRVRQGYSPL------SFQ--TLTPNPRGPDRLGGIEEEGGEQDRDR----SI 235 V+ +++R+R+GY P+ FQ + + P R EE+ G D I Sbjct 688 IYVVQMLSRLRKGYRPVFSSPPAYFQQIHIHKDREQPAR-EETEEDVGNSVGDNWWPWPI 746 Query 236 RLVSGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGGL 295 R + + L L Y+ RDL+ + + ++L+ +S R + + L++ Sbjct 747 RYIHFLIRQLIRLLNRL----YNICRDLLSRSFQTLQLISQSLRRALTAVRDWLRFNTAY 802 Query 296 VQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIW-------RAICNIPRRIRQGFE 348 +QY ++++ F A A E + +G W R I +PRRIRQG E Sbjct 803 LQYGGEWIQEA----FRAFARATGET---LTNAWRGFWGTLGQIGRGILAVPRRIRQGAE 855 Query 349 AAL 351 AL Sbjct 856 IAL 858 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE GHANA-1)] Sequence ID: P18040.2 Length: 738 Range 1: 509 to 701 Score:171 bits(432), Expect:2e-46, Method:Compositional matrix adjust., Identities:96/197(49%), Positives:130/197(65%), Gaps:4/197(2%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS MGAAS+TL+ Q R LL+GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 509 FLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 568 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N S WNNMTW +W++++ Sbjct 569 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WVNDSLSPDWNNMTWQEWEKQVRYL 624 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I + LE +Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+I LRI Sbjct 625 EANISQSLEQAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGVYIVVGVIVLRIA 684 Query 188 FAVLSIVNRVRQGYSPL 204 ++ +++R+R+GY P+ Sbjct 685 IYIVQLLSRLRKGYRPV 701 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32; Flags: Precursor [Simian immunodeficiency virus (K78 ISOLATE)] Sequence ID: P11267.2 Length: 881 Range 1: 534 to 880 Score:170 bits(431), Expect:6e-46, Method:Compositional matrix adjust., Identities:131/365(36%), Positives:189/365(51%), Gaps:39/365(10%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AGS +GA + +T Q R LL+GIVQQQ LL ++ QQ +L+LTVWG K LQT Sbjct 534 FLGFLATAGSAIGAVVVDVTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQT 593 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 +V AIE+YL+DQ L WGC+ + +C VP W N S WNN TW +W+R++ Sbjct 594 KVTAIEKYLKDQAQLNAWGCAFRQVCHITVP----WPNASLTPDWNNDTWQEWERKVDFL 649 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LLE++Q QQEKN L L+ W WF + +W+ YI+ I +V G+I LRI+ Sbjct 650 EENITALLEEAQIQQEKNMYKLQKLNSWDVFGNWFDLASWIKYIQYGIYVVVGVILLRIV 709 Query 188 FAVLSIVNRVRQGY-----SPLSFQTLTP---NPRGPDRLGGIEEEGGEQDRDR------ 233 ++ ++ ++RQGY SP S+ T +P P R G + G Sbjct 710 IYIVQMLAKLRQGYRPVFSSPPSYFQXTHTQQDPALPTREGKEGDGGEGGGNSSWPWQIE 769 Query 234 ----SIRLVSGFLALAWDDLRSLCLFSYHRLRDLI--LIAA-RAVELLGRSSLRGIQRGW 286 IR + L + + R+L +Y L+ ++ L A R + + R+ L +Q GW Sbjct 770 YIHFLIRQLIRLLTWLFSNCRTLLSRAYQILQPILQRLSATLRRIREVLRTELTYLQYGW 829 Query 287 EILKYLGGLVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQG 346 Y+ ++ S +T+A A + + E ++ R I IPRRIRQG Sbjct 830 S----------YFHEAVQAGWRSATETLAGAWGD----LWETLRRGGRWILAIPRRIRQG 875 Query 347 FEAAL 351 E L Sbjct 876 LELTL 880 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (ISOLATE SBLISY)] Sequence ID: P12449.1 Length: 846 Range 1: 510 to 845 Score:165 bits(417), Expect:5e-44, Method:Compositional matrix adjust., Identities:132/357(37%), Positives:182/357(50%), Gaps:34/357(9%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AG+ MGAAS+TL+ Q R L GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 510 FLGFLTTAGAAMGAASLTLSAQSRTLFRGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 569 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL DQ L WGC+ + +C T VP W N + WNNMTW +W+ +I Sbjct 570 RVTAIEKYLADQARLNSWGCAFRQVCHTTVP----WVNDTLTPEWNNMTWQEWEHKIRFL 625 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LE +Q QQEKN +L L+ W WF +T+W+ YI+ + IV G++ LRI+ Sbjct 626 EANISESLEQAQIQQEKNMYELQKLNSWDVFGNWFDLTSWIKYIQYGVMIVVGIVALRIV 685 Query 188 FAVLSIVNRVRQGYSPLSFQTLTPNPRG-------------PDRLGGIEEEGGEQDRDRS 234 V+ +++R+R+GY P+ F + P G PDR EE+ G RS Sbjct 686 IYVVQMLSRLRKGYRPV-FSS----PPGYIQQIHIHKDWEQPDR-EETEEDVGNDVGSRS 739 Query 235 IRLVSGFLALAWDDLRSLCLFSYHRLRDLILIAARAVELLGRSSLRGIQRGWEILKYLGG 294 ++ L L Y+ RDL+ ++ L R W LK Sbjct 740 WPWPIEYIHFLIRLLIRLLTRLYNSCRDLLSRLYLILQPL---------RDWLRLK--AA 788 Query 295 LVQYWSLELKKSAISLFDTIAIAVAEGTDRIIEVIQGIWRAICNIPRRIRQGFEAAL 351 +QY ++++ +L + + + I R I +PRRIRQG E AL Sbjct 789 YLQYGCEWIQEAFQALARVTRETLTSAGRSLWGALGRIGRGILAVPRRIRQGAEIAL 845 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 41; Short=gp41; Flags: Precursor [Human immunodeficiency virus type 2 (isolate ST/24.1C#2)] Sequence ID: P32536.1 Length: 712 Range 1: 512 to 704 Score:160 bits(406), Expect:9e-43, Method:Compositional matrix adjust., Identities:94/197(48%), Positives:129/197(65%), Gaps:4/197(2%) Query 8 FLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQT 67 FLGFL AG+ MGAAS+TL+ Q R L+GIVQQQ LL ++ QQ ML+LTVWG K LQ Sbjct 512 FLGFLTTAGAAMGAASLTLSAQSRTSLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQA 571 Query 68 RVLAIERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNY 127 RV AIE+YL+DQ L WGC+ + +C T VP W N + WNN+TW +W++ I N Sbjct 572 RVTAIEKYLKDQAQLNSWGCAFRQVCHTTVP----WVNDTLTPDWNNITWQEWEQRIRNL 627 Query 128 TNTIYRLLEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRII 187 I LE +Q QQEKN +L L+ W WF +T+W+ YI+ + IV G+I LR++ Sbjct 628 EANISESLEQAQIQQEKNMYELQKLNSWDVFSNWFDLTSWIKYIQYGVYIVVGIIVLRMV 687 Query 188 FAVLSIVNRVRQGYSPL 204 V+ +++R+R+GY P+ Sbjct 688 IYVVQMLSRLRKGYRPV 704 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein gp120; Short=SU; AltName: Full=Glycoprotein 120; Short=gp120; Contains: RecName: Full=Transmembrane protein gp41; Short=TM; AltName: Full=Glycoprotein 32; Short=gp32 [Simian immunodeficiency virus (ISOLATE GB1)] Sequence ID: P22380.1 Length: 821 Range 1: 583 to 800 Score:150 bits(380), Expect:4e-39, Method:Compositional matrix adjust., Identities:86/224(38%), Positives:133/224(59%), Gaps:12/224(5%) Query 15 AGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIER 74 AGS MG+ S+ LTVQ + L++GIV+QQ LL+ IE Q +L+LT+WG+K LQTR+ ++E Sbjct 583 AGSAMGSVSVALTVQSQSLVTGIVEQQKQLLKLIEQQSELLKLTIWGVKNLQTRLTSLEN 642 Query 75 YLRDQQLLGIWGCSGKLICTTAVPWNSSWSNRSQEDIWNNMTWMQWDREISNYTNTIYRL 134 Y++DQ LL WGCS +C T+V W+N S W + TW +W+ I + Sbjct 643 YIKDQALLSQWGCSWAQVCHTSV----EWTNTSITPNWTSETWKEWETRTDYLQQNITEM 698 Query 135 LEDSQNQQEKNEQDLLALDKWQNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIFAVLSIV 194 L+ + +++++N +L L + +WF T W+ Y+K + +V G+IGLRI+ A+ + + Sbjct 699 LKQAYDREQRNTYELQKLGDLTSWASWFDFTWWVQYLKWGVFLVLGIIGLRILLALWNTI 758 Query 195 NRVRQGYSPLSFQTLTPN--PRGPDRLGGIEE----EGGEQDRD 232 +R RQGY P+ Q N + PD G EE E GE + + Sbjct 759 SRFRQGYRPVFSQDCQQNLYRKRPD--NGEEESNSLELGEHNSE 800 >RecName: Full=Envelope glycoprotein; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; AltName: Full=Glycoprotein 135; Short=gp135; Contains: RecName: Full=Transmembrane protein; AltName: Full=Glycoprotein 38; Short=gp38; Flags: Precursor [Caprine arthritis encephalitis virus G63] Sequence ID: P31627.2 Length: 942 Range 1: 639 to 841 Score:63.5 bits(153), Expect:9e-10, Method:Compositional matrix adjust., Identities:59/212(28%), Positives:99/212(46%), Gaps:19/212(8%) Query 7 VFLGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQ 66 V + + AAG+++G A+ + + + + A+EA M+Q G++ L+ Sbjct 639 VIMAIVAAAGASLGVANAIQQSYTKAAVQTLANATAAQQDALEATYAMVQHVAKGVRILE 698 Query 67 TRVLAIERYLRDQ----QLLGIWGCSGKLICTT--AVPWNSSWSNRSQEDIWNNMTWMQW 120 RV +E + D+ Q L W + +T V +W+ +N TW QW Sbjct 699 ARVARVEA-ITDRIMLYQELDCWHYHQYCVTSTRADVAKYINWTRFK-----DNCTWQQW 752 Query 121 DREISNYTNTIYRLLEDSQNQQEKNEQDLLAL-DKWQNL---WTWFGITNWLWYIKIFIK 176 +RE+ Y + LL +S Q + E+ + + D W++L + W G +WL YI I Sbjct 753 ERELQGYDGNLTMLLRESARQTQLAEEQVRRIPDVWESLKEVFDWSGWFSWLKYIPI--- 809 Query 177 IVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQT 208 IV GL+G +I AV+ + + Q Y LS T Sbjct 810 IVVGLVGCILIRAVICVCQPLVQIYRTLSTPT 841 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; AltName: Full=Glycoprotein 135; Short=gp135; Contains: RecName: Full=Transmembrane protein; AltName: Full=Glycoprotein 46; Short=gp46; Flags: Precursor [Ovine lentivirus (strain SA-OMVV)] Sequence ID: P16899.1 Length: 990 Range 1: 699 to 898 Score:46.2 bits(108), Expect:3e-04, Method:Compositional matrix adjust., Identities:53/212(25%), Positives:93/212(43%), Gaps:21/212(9%) Query 32 QLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLRDQQLLGIWGC-SGK 90 Q L+ Q N+L A A M+Q G++ L+ RV +E + L C + Sbjct 699 QSLANATAAQQNVLEATYA---MVQHVAKGVRILEARVARVEAIVDRMMLYHELDCWHYQ 755 Query 91 LICTTAVPWNSSWSNRSQEDIW----NNMTWMQWDREISNYTNTIYRLLEDSQNQQEKNE 146 C T S+ + +Q W +N TW QW+ EI + + LL+++ Q + + Sbjct 756 HYCVT-----STRTEVAQYVNWTRYKDNCTWQQWEEEIEQHEANLSLLLKEAALQVQIAQ 810 Query 147 QDLLAL-DKW---QNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIFAVLSIVNRVRQGYS 202 +D + D W Q + W G +WL YI + + G+I R++ V+++ + + Sbjct 811 RDAQRIPDVWKALQEAFDWSGWFSWLKYIPWIVVCIVGVICFRLLMCVITMCLQAYRQVR 870 Query 203 PLSFQTLTPNPRGPDRLGGIEEEGGEQDRDRS 234 + + +T P L EE ++RD S Sbjct 871 EIRYTRVTVVIEAPVDL----EEKQREERDGS 898 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; AltName: Full=Glycoprotein 135; Short=gp135; Contains: RecName: Full=Transmembrane protein; AltName: Full=Glycoprotein 46; Short=gp46; Flags: Precursor [Visna lentivirus (strain 1514 / clone LV1-1KS1)] Sequence ID: P23422.1 Length: 989 Range 1: 698 to 896 Score:43.1 bits(100), Expect:0.004, Method:Compositional matrix adjust., Identities:51/208(25%), Positives:86/208(41%), Gaps:18/208(8%) Query 30 VRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLRDQQLLGIWGC-S 88 V+ L + QQ +EA M+Q GI+ L+ RV +E + + C Sbjct 698 VQSLANATAAQQE----VLEASYAMVQHIAKGIRILEARVARVEALVDRMMVYHELDCWH 753 Query 89 GKLICTTAVPWNSSWSNRSQEDIW----NNMTWMQWDREISNYTNTIYRLLEDSQNQQEK 144 + C T S+ S + W +N TW QW+ EI + + LL ++ Q Sbjct 754 YQHYCVT-----STRSEVANYVNWTRFKDNCTWQQWEEEIEQHEGNLSLLLREAALQVHI 808 Query 145 NEQDLLAL-DKW---QNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIFAVLSIVNRVRQG 200 ++D + D W Q + W +WL YI I + GLI RI+ V+S+ + + Sbjct 809 AQRDARRIPDAWKAIQEAFNWSSWFSWLKYIPWIIMGIVGLICFRILMCVISMCLQAYKQ 868 Query 201 YSPLSFQTLTPNPRGPDRLGGIEEEGGE 228 + + +T P L ++ G+ Sbjct 869 VKQIRYTQVTVVIEAPVELEEKQKRNGD 896 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; AltName: Full=Glycoprotein 135; Short=gp135; Contains: RecName: Full=Transmembrane protein; AltName: Full=Glycoprotein 46; Short=gp46; Flags: Precursor [Visna/maedi virus EV1 KV1772] Sequence ID: P35954.1 Length: 983 Range 1: 692 to 890 Score:42.4 bits(98), Expect:0.005, Method:Compositional matrix adjust., Identities:50/208(24%), Positives:86/208(41%), Gaps:18/208(8%) Query 30 VRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLRDQ---QLLGIWG 86 V+ L + QQ +EA M+Q GI+ L+ RV +E + Q L W Sbjct 692 VQSLANATAAQQE----VLEASYAMVQHIAKGIRILEARVARVEALVDRMMVYQELDCWH 747 Query 87 CSGKLICTT--AVPWNSSWSNRSQEDIWNNMTWMQWDREISNYTNTIYRLLEDSQNQQEK 144 + +T V +W+ +N TW QW+ EI + + LL ++ Q Sbjct 748 YQHYCVTSTRSEVANYVNWTRFK-----DNCTWQQWEEEIEQHEGNLSLLLREAALQVHI 802 Query 145 NEQDLLAL-DKW---QNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIFAVLSIVNRVRQG 200 ++D + D W Q + W +WL YI I + GL+ RI+ V+S+ + + Sbjct 803 AQRDARRIPDAWKAIQEAFNWSSWFSWLKYIPWIIMGIVGLMCFRILMCVISMCLQAYKQ 862 Query 201 YSPLSFQTLTPNPRGPDRLGGIEEEGGE 228 + + +T P L ++ G+ Sbjct 863 VKQIRYTQVTVVIEAPVELEEKQKRNGD 890 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; AltName: Full=Glycoprotein 135; Short=gp135; Contains: RecName: Full=Transmembrane protein; AltName: Full=Glycoprotein 46; Short=gp46; Flags: Precursor [Visna lentivirus (strain 1514 / clone LV1-1KS2)] Sequence ID: P23423.1 Length: 991 Range 1: 700 to 898 Score:42.4 bits(98), Expect:0.006, Method:Compositional matrix adjust., Identities:50/208(24%), Positives:86/208(41%), Gaps:18/208(8%) Query 30 VRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERYLRDQQLLGIWGC-S 88 V+ L + QQ +EA M+Q GI+ L+ RV +E + + C Sbjct 700 VQSLANATAAQQE----VLEASYAMVQHIAKGIRILEARVARVEALVDRMMVYHELDCWH 755 Query 89 GKLICTTAVPWNSSWSNRSQEDIW----NNMTWMQWDREISNYTNTIYRLLEDSQNQQEK 144 + C T S+ S + W +N TW QW+ EI + + LL ++ Q Sbjct 756 YQHYCVT-----STRSEVANYVNWTRFKDNCTWQQWEEEIEQHEGNLSLLLREAALQVHI 810 Query 145 NEQDLLAL-DKW---QNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIFAVLSIVNRVRQG 200 ++D + D W Q + W +WL Y+ I + GLI RI+ V+S+ + + Sbjct 811 AQRDARRIPDAWKAIQEAFNWSSWFSWLKYVPWIIMGIVGLICFRILMCVISMCLQAYKQ 870 Query 201 YSPLSFQTLTPNPRGPDRLGGIEEEGGE 228 + + +T P L ++ G+ Sbjct 871 VKQIRYTQVTVVIEAPVELEEKQKRNGD 898 >RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env polyprotein; Contains: RecName: Full=Surface protein; AltName: Full=Glycoprotein 135; Short=gp135; Contains: RecName: Full=Transmembrane protein; AltName: Full=Glycoprotein 46; Short=gp46; Flags: Precursor [Visna lentivirus (strain 1514)] Sequence ID: P03379.1 Length: 982 Range 1: 692 to 889 Score:42.4 bits(98), Expect:0.006, Method:Compositional matrix adjust., Identities:50/207(24%), Positives:86/207(41%), Gaps:17/207(8%) Query 30 VRQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQTRVLAIERY--LRDQQLLGIWGC 87 V+ L + QQ +EA M+Q GI+ L+ RV +E + Q L W Sbjct 692 VQSLANATAAQQE----VLEASYAMVQHIAKGIRILEARVARVEALVDMMVYQELDCWHY 747 Query 88 SGKLICTT--AVPWNSSWSNRSQEDIWNNMTWMQWDREISNYTNTIYRLLEDSQNQQEKN 145 + +T V +W+ +N TW QW+ EI + + LL ++ Q Sbjct 748 QHYCVTSTRSEVANYVNWTRFK-----DNCTWQQWEEEIEQHEGNLSLLLREAALQVHIA 802 Query 146 EQDLLAL-DKW---QNLWTWFGITNWLWYIKIFIKIVGGLIGLRIIFAVLSIVNRVRQGY 201 ++D + D W Q + W +WL YI I + GL+ RI+ V+S+ + + Sbjct 803 QRDARRIPDAWKAIQEAFNWSSWFSWLKYIPWIIMGIVGLMCFRILMCVISMCLQAYKQV 862 Query 202 SPLSFQTLTPNPRGPDRLGGIEEEGGE 228 + + +T P L ++ G+ Sbjct 863 KQIRYTQVTVVIEAPVELEEKQKRNGD 889