# fasta34 FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 U00096, 76 nt vs bs_genome.fasta library opt E() < 20 0 0: 22 0 0: one = represents 1 library sequences 24 0 0: 26 0 0: 28 0 0: 30 0 0: 32 1 0:= 34 0 1:* 36 1 1:* 38 5 2:=*=== 40 5 3:==*== 42 0 4: * 44 4 4:===* 46 2 4:== * 48 1 4:= * 50 7 3:==*==== 52 5 3:==*== 54 1 3:= * 56 1 2:=* 58 2 2:=* 60 0 1:* 62 1 1:* 64 2 1:*= 66 1 1:* 68 0 1:* 70 0 0: 72 0 0: 74 1 0:= 76 1 0:= 78 0 0: 80 0 0: 82 0 0: 84 0 0: 86 0 0: 88 0 0: 90 0 0: 92 0 0: 94 0 0: 96 0 0: 98 0 0: 100 0 0: 102 0 0: 104 0 0: 106 0 0: 108 0 0: 110 0 0: 112 0 0: 114 1 0:= 116 0 0: 118 0 0: >120 0 0: 474432 residues in 21 sequences MLE_cen statistics: Lambda= 0.1490; K=0.002401 (cen=2) Kolmogorov-Smirnov statistic: 0.1172 (N=17) at 40 FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6 join: 45, opt: 30, open/ext: -12/-4, width: 16 The best scores are: opt bits E(21) Z99104 Z99104 Bacillus subtilis complete genom (213080) [f] 111 32.6 0.0057 Z99115 Z99115 Bacillus subtilis complete genom (201375) [r] 78 25.5 0.77 Z99118 Z99118 Bacillus subtilis complete genom (200707) [r] 76 25.0 1 Z99114 Z99114 Bacillus subtilis complete genom (192961) [f] 70 23.8 2.5 Z99114 Z99114 Bacillus subtilis complete genom (192961) [r] 67 23.1 3.8 Z99117 Z99117 Bacillus subtilis complete genom (199173) [r] 67 23.1 3.8 Z99121 Z99121 Bacillus subtilis complete genom (194692) [r] 66 22.9 4.4 Z99117 Z99117 Bacillus subtilis complete genom (199173) [f] 65 22.7 5.1 Z99106 Z99106 Bacillus subtilis complete genom (195912) [r] 62 22.0 7.6 Z99107 Z99107 Bacillus subtilis complete genom (202089) [r] 62 22.0 7.6 Z99113 Z99113 Bacillus subtilis complete genom (207829) [f] 60 21.6 9.9 Z99124 Z99124 Bacillus subtilis complete genom (203901) [r] 59 21.4 11 Z99124 Z99124 Bacillus subtilis complete genom (203901) [r] 58 21.2 13 Z99105 Z99105 Bacillus subtilis complete genom (202768) [f] 58 21.2 13 Z99119 Z99119 Bacillus subtilis complete genom (199922) [r] 57 21.0 14 Z99119 Z99119 Bacillus subtilis complete genom (199922) [r] 57 21.0 14 Z99113 Z99113 Bacillus subtilis complete genom (207829) [f] 57 21.0 14 Z99112 Z99112 Bacillus subtilis complete genom (204263) [r] 56 20.7 16 Z99116 Z99116 Bacillus subtilis complete genom (204537) [f] 56 20.7 16 Z99123 Z99123 Bacillus subtilis complete genom (201139) [r] 56 20.7 16 Z99106 Z99106 Bacillus subtilis complete genom (195912) [f] 56 20.7 16 Z99122 Z99122 Bacillus subtilis complete genom (200690) [r] 55 20.5 18 Z99108 Z99108 Bacillus subtilis complete genom (197409) [f] 55 20.5 18 Z99116 Z99116 Bacillus subtilis complete genom (204537) [f] 55 20.5 18 Z99118 Z99118 Bacillus subtilis complete genom (200707) [r] 55 20.5 18 >>Z99104 Z99104 Bacillus subtilis complete genome (secti (213080 nt) initn: 127 init1: 102 opt: 111 Z-score: 114.9 bits: 32.6 E(): 0.0057 banded Smith-Waterman score: 111; 62.319% identity (62.319% similar) in 69 nt overlap (8-76:11557-11625) 10 20 30 U00096 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTA :::::::: ::: ::::: : :: : : Z99104 TCAGGCCCACCATCTTATATAACGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCA 11530 11540 11550 11560 11570 11580 40 50 60 70 U00096 ATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA : ::::: ::::::: :: : : ::::: Z99104 CGCAGGAGGTCAGCGGTTCGATCCCGCTAGGCTCCACCAACGTGTTCTTTGAAAACTAGA 11590 11600 11610 11620 11630 11640 Z99104 TAACAGTAGACATCACATTCAATTAGTAACACAAGATATCACATAGTGATTCTTTTTAAC 11650 11660 11670 11680 11690 11700 >>Z99115 Z99115 Bacillus subtilis complete genome (secti (201375 nt) rev-comp initn: 102 init1: 66 opt: 78 Z-score: 76.6 bits: 25.5 E(): 0.77 banded Smith-Waterman score: 78; 85.714% identity (85.714% similar) in 21 nt overlap (24-4:4938-4958) 50 40 30 20 10 U0009- ACCTACGACCTTCGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC :: :: ::::::: ::::::: Z99115 CGTAGTTTTTAGATTTCAGTTACAGTTGGTCTTTAACAACTGATCTATATCTAATTAAAA 4910 4920 4930 4940 4950 4960 Z99115 AGGCCTCTAGTCTCCCCAACTCTGTTTTATGGTAATCATGATGAGTCCCTTCGGTTTCTG 4970 4980 4990 5000 5010 5020 >>Z99118 Z99118 Bacillus subtilis complete genome (secti (200707 nt) rev-comp initn: 60 init1: 60 opt: 76 Z-score: 74.3 bits: 25.0 E(): 1 banded Smith-Waterman score: 76; 76.923% identity (76.923% similar) in 26 nt overlap (58-33:308-333) 70 60 50 40 30 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATGC ::: :: :::::::::::: : :: Z99118 CGCCTTTTTTGATACCCTCCTTGCGTAATTTCGTACGAACGACCTTCGCAATTGGATCAG 280 290 300 310 320 330 20 10 U0009- GCTGCTCTACCAACTGAGCTATATCGGC Z99118 TGTGCGTTTTTGAGATATCAGCGATTTGGAAGCGTGTCGGATCCGTTTTATTTGCAGCAC 340 350 360 370 380 390 >>Z99114 Z99114 Bacillus subtilis complete genome (secti (192961 nt) initn: 75 init1: 60 opt: 70 Z-score: 67.3 bits: 23.8 E(): 2.5 banded Smith-Waterman score: 70; 68.750% identity (68.750% similar) in 32 nt overlap (10-41:7843-7874) 10 20 30 U00096 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAAT :::::::::::: :: : :: : :: Z99114 TGCCTGTGATGGTTCATATGTTAATATTCCGCTCAGTTGGTACGTCACCCAATCACTGAT 7820 7830 7840 7850 7860 7870 40 50 60 70 U00096 GCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA :: Z99114 GCTTGTAAAGCTTGCAGTCTTTTCCCATAAAGAGGGCTGGCGCTGTTTTAATCCATAAAG 7880 7890 7900 7910 7920 7930 >>Z99114 Z99114 Bacillus subtilis complete genome (secti (192961 nt) rev-comp initn: 75 init1: 50 opt: 67 Z-score: 63.8 bits: 23.1 E(): 3.8 banded Smith-Waterman score: 67; 60.563% identity (60.563% similar) in 71 nt overlap (73-8:14610-14680) 70 60 50 U0009- TGGTGCCGATAAT--AGGAGTCGAACCTACGAC :::::::::: :: ::: : :::: Z99114 TTCAGATGTTGATTTCGATTCTTCCGCGCTTGCCGATAATTCTTCAGAGGAAGCGGCGAC 14580 14590 14600 14610 14620 14630 40 30 20 10 U0009- --CTTCGCATTA-CGAATGCGCTGCTCTACCAACTGAGCTATATCGGC ::: :: : : :: ::::: :: : :::: :: Z99114 TTGTTCAGATGAGCTGCTGATCTGCTTCACAATTTGAGTTAATGAATGAGTAAAAGAATT 14640 14650 14660 14670 14680 14690 Z99114 AAAAGATTGGGCAAGCTGGCCAAATTCATCTTTATTTTTCACAATGACTTTTTTGGTTAA 14700 14710 14720 14730 14740 14750 >>Z99117 Z99117 Bacillus subtilis complete genome (secti (199173 nt) rev-comp initn: 70 init1: 45 opt: 67 Z-score: 63.8 bits: 23.1 E(): 3.8 banded Smith-Waterman score: 67; 65.714% identity (65.714% similar) in 35 nt overlap (76-42:14261-14295) 70 60 50 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGA : : ::::::::: : : : :: :: : Z99117 GGCTGACAACCCTGGAATAATTCATGCGGGTCGGGCCGATAATCGCAATTGAGCCGATCT 14240 14250 14260 14270 14280 14290 40 30 20 10 U0009- CCTTCGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC :::: Z99117 GCTTCTGGTCTACGGAATAAGAAGCCGTAATCAGACTGCAATTTTCCATCTCTTCATAGT 14300 14310 14320 14330 14340 14350 >>Z99121 Z99121 Bacillus subtilis complete genome (secti (194692 nt) rev-comp initn: 40 init1: 40 opt: 66 Z-score: 62.7 bits: 22.9 E(): 4.4 banded Smith-Waterman score: 66; 61.333% identity (61.333% similar) in 75 nt overlap (72-1:1962-2033) 70 60 50 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGACCTT :::::::: :: :::: : :::: Z99121 ACGACGTGCCAAATAAAAGAAAAAGGGAACGCCGATAAGAGAAGTCAGCGCGCCGAC--A 1940 1950 1960 1970 1980 40 30 20 10 U0009- CGCATTACGAATGCGCTGCTCTACCA-ACTG--AGCTATATCGGC :: :: : :: : :: : ::: : ::: ::::: :: :: Z99121 GGCGTTTC-AAAGGGCGCATTTACGAGTCTGGCCGCTATGTCAGCAAAAACAAGCAAAAC 1990 2000 2010 2020 2030 2040 Z99121 AGCACCGAGCACCGCCGAGCAAGGAATGATCCACCGATAATCCACACCGACCAAAAAACG 2050 2060 2070 2080 2090 2100 >>Z99117 Z99117 Bacillus subtilis complete genome (secti (199173 nt) initn: 100 init1: 50 opt: 65 Z-score: 61.5 bits: 22.7 E(): 5.1 banded Smith-Waterman score: 65; 77.273% identity (77.273% similar) in 22 nt overlap (33-54:11282-11303) 10 20 30 40 50 60 U00096 CGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCC :::::::::: : :: : ::: Z99117 TAGGGTCAGTGTGACCAAATTGATCGTAATGCGCACGTTTTTGGTCATCTGAC 11260 11270 11280 11290 11300 11310 70 U00096 TATTATCGGCACCA Z99117 AGCGTTTCGTATGCTTCTTTTACCTCTTTAAATTTTTCATCTGATCCGGCTTCTTTGTTA 11320 11330 11340 11350 11360 11370 >>Z99106 Z99106 Bacillus subtilis complete genome (secti (195912 nt) rev-comp initn: 60 init1: 60 opt: 62 Z-score: 58.0 bits: 22.0 E(): 7.6 banded Smith-Waterman score: 62; 87.500% identity (87.500% similar) in 16 nt overlap (73-58:21484-21499) 70 60 50 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGACCT : :::::::::::: : Z99106 AGAGATGCCTTTATGTAATTCCTTCAGGCTTTCCGATAATAGGACTGATTTATCCTTTGG 21460 21470 21480 21490 21500 21510 40 30 20 10 U0009- TCGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC Z99106 CTTGTAGGAGGATGCTGAATGAATATAAAGCTCGATGGCTTCGGGCGGAAGAAGAGACTG 21520 21530 21540 21550 21560 21570 >>Z99107 Z99107 Bacillus subtilis complete genome (secti (202089 nt) rev-comp initn: 50 init1: 50 opt: 62 Z-score: 58.0 bits: 22.0 E(): 7.6 banded Smith-Waterman score: 62; 87.500% identity (87.500% similar) in 16 nt overlap (41-26:6069-6084) 70 60 50 40 30 20 U0009- CCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCGCTGCTCTACCAACTGA :::::::::: ::: : Z99107 CTGCGGAAGGCCATGTGAATCCTACTTTAGGCATTACGAAAGCGTTTTCCGATAAGGGAT 6040 6050 6060 6070 6080 6090 10 U0009- GCTATATCGGC Z99107 ATGATGTCCATTATATATCCACTGAAAAATATAAAAAACGATTAGAAGCAGCGGGAGCAA 6100 6110 6120 6130 6140 6150 >>Z99113 Z99113 Bacillus subtilis complete genome (secti (207829 nt) initn: 70 init1: 45 opt: 60 Z-score: 55.7 bits: 21.6 E(): 9.9 banded Smith-Waterman score: 60; 66.667% identity (66.667% similar) in 36 nt overlap (2-35:16680-16715) 10 20 U00096 GCCGATATAGCTCAG--TTGGTAGAGCAGCG ::: ::: :::: :: :::::::: Z99113 TGTGAATCATATCTTACATCCGCTGGTGCACCGCAATACATCAGACTTTACTGAGCAGCG 16650 16660 16670 16680 16690 16700 30 40 50 60 70 U00096 CATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA : :: : Z99113 CTTTAGCTCTGTATTTACAGGCACGGAATTTTTCCTGTCAGATCATGTTGTACAGGGACA 16710 16720 16730 16740 16750 16760 >>Z99124 Z99124 Bacillus subtilis complete genome (secti (203901 nt) rev-comp initn: 75 init1: 50 opt: 59 Z-score: 54.5 bits: 21.4 E(): 11 banded Smith-Waterman score: 59; 76.000% identity (76.000% similar) in 25 nt overlap (71-48:1380-1404) 70 60 50 U0009- TGGTGCCGATAATAG-GAGTCGAACCTACGACCTT :::::::::: :: ::: :: :: Z99124 CTGCGCGAAAAACTTTAAGTGGGTGACGAACCGATAATAGTGAAGCGATTCTTCGTTGAA 1350 1360 1370 1380 1390 1400 40 30 20 10 U0009- CGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC Z99124 TTCAATCTTAAAATGGTATTTTACAATACTCAAAATCTCTTGCATGACTTTTGTAATGTT 1410 1420 1430 1440 1450 1460 >>Z99124 Z99124 Bacillus subtilis complete genome (secti (203901 nt) rev-comp initn: 50 init1: 50 opt: 58 Z-score: 53.4 bits: 21.2 E(): 13 banded Smith-Waterman score: 58; 82.353% identity (82.353% similar) in 17 nt overlap (48-32:16486-16502) 70 60 50 40 30 20 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCGCTGCTCTAC : :::::::::: ::: Z99124 TTCTTTACCGTTGTAAATGTTAACTTTATAGCCCTTCGCATTTTGAACCTTTTCCCATAT 16460 16470 16480 16490 16500 16510 10 U0009- CAACTGAGCTATATCGGC Z99124 CAAATTCACATAACCCGTTTGACTCGATTTTGTATTTGTATACAAATAGCCAGTTACATT 16520 16530 16540 16550 16560 16570 >>Z99105 Z99105 Bacillus subtilis complete genome (secti (202768 nt) initn: 45 init1: 45 opt: 58 Z-score: 53.4 bits: 21.2 E(): 13 banded Smith-Waterman score: 58; 82.353% identity (82.353% similar) in 17 nt overlap (26-42:17698-17714) 10 20 30 40 50 U00096 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTT :::: ::::::::: : Z99105 AGTCTCGCCAGAATGCCATCATTGCCTGAAAGCGGCTTCGTAATGAGCGGAATCAGACGA 17670 17680 17690 17700 17710 17720 60 70 U00096 CGACTCCTATTATCGGCACCA Z99105 AAAAGTTAAATTAAAAAGCTCTCTTCCTTTATCGAAGAGAGCTTTTTGATTACTTCTTTT 17730 17740 17750 17760 17770 17780 >>Z99119 Z99119 Bacillus subtilis complete genome (secti (199922 nt) rev-comp initn: 40 init1: 40 opt: 57 Z-score: 52.2 bits: 21.0 E(): 14 banded Smith-Waterman score: 57; 86.667% identity (86.667% similar) in 15 nt overlap (27-13:12008-12022) 50 40 30 20 10 U0009- CGAACCTACGACCTTCGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC ::::: :::::::: Z99119 AACCGCCAGAAAGCATCAGCATCGCTTTTCCTGCTGAACCAACTGGCAGCCCGCCTGCAC 11980 11990 12000 12010 12020 12030 Z99119 CTTTTTCATCACGAATTGTCAAAAATGTTGCTTCTTCCCTGATTTCGATTCTGAGCGGGA 12040 12050 12060 12070 12080 12090 >>Z99119 Z99119 Bacillus subtilis complete genome (secti (199922 nt) rev-comp initn: 45 init1: 45 opt: 57 Z-score: 52.2 bits: 21.0 E(): 14 banded Smith-Waterman score: 57; 86.667% identity (86.667% similar) in 15 nt overlap (76-62:6560-6574) 70 60 50 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGA :: :: ::::::::: Z99119 CTTTGACGCTTTCAAAGAAACTCATAGAGATGCTGACGATAATAGACACGCCGAAAATCC 6530 6540 6550 6560 6570 6580 40 30 20 10 U0009- CCTTCGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC Z99119 CCAGAGCAATCACTAATGCAATCCATCTTTTTGCATTCATTTTTTCTCCTCCTTTTTCCT 6590 6600 6610 6620 6630 6640 >>Z99113 Z99113 Bacillus subtilis complete genome (secti (207829 nt) initn: 50 init1: 50 opt: 57 Z-score: 52.2 bits: 21.0 E(): 14 banded Smith-Waterman score: 57; 86.667% identity (86.667% similar) in 15 nt overlap (38-52:7490-7504) 10 20 30 40 50 60 U00096 TAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTA :::::::::: ::: Z99113 CAATTGAGGCATGGCTGCAAAAAGGAAAATATGCGAAGGTTTTAGACCTGTGGGTAAGAG 7460 7470 7480 7490 7500 7510 70 U00096 TCGGCACCA Z99113 GTTTGCGAATCGACTGGAGCACGCTATATCAGGATCAAAAACCGCGGCGCATCAGTTTAC 7520 7530 7540 7550 7560 7570 >>Z99112 Z99112 Bacillus subtilis complete genome (secti (204263 nt) rev-comp initn: 45 init1: 45 opt: 56 Z-score: 51.0 bits: 20.7 E(): 16 banded Smith-Waterman score: 56; 70.588% identity (70.588% similar) in 34 nt overlap (39-9:9045-9078) 70 60 50 40 30 20 U0009- GATAATAGGAGTCGAACCTACGACCTTCGCATTACGAA--TGCGCTGCTCTA-CCAACTG :::::::: :: :: : : : ::::: Z99112 TAAATGAATTCCTAGCCCAAGTCAGAAAAGATTACGAAATTGTTCTCCGCAAGAAAACTG 9020 9030 9040 9050 9060 9070 10 U0009- AGCTATATCGGC :::: Z99112 AGCTTGAAGCGAAAGTCAATGAGCTTGATGAAAGAATCGGACACTTTGCCAATATTGAGG 9080 9090 9100 9110 9120 9130 >>Z99116 Z99116 Bacillus subtilis complete genome (secti (204537 nt) initn: 45 init1: 45 opt: 56 Z-score: 51.0 bits: 20.7 E(): 16 banded Smith-Waterman score: 56; 64.516% identity (64.516% similar) in 31 nt overlap (15-45:1868-1898) 10 20 30 40 U00096 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAA :::: ::::::::: : : :::: Z99116 GCACTTCTCGAAGCTTTGGAAAACGGGCATGTTGCGGGAGCAGCGCTTGACGTTTTCGAA 1840 1850 1860 1870 1880 1890 50 60 70 U00096 GGTCGTAGGTTCGACTCCTATTATCGGCACCA : Z99116 GTCGAACCGCCAGTTGACAACAAACTTGTTGATCATCCATTAGTCATTGCCACTCCTCAC 1900 1910 1920 1930 1940 1950 >>Z99123 Z99123 Bacillus subtilis complete genome (secti (201139 nt) rev-comp initn: 70 init1: 45 opt: 56 Z-score: 51.0 bits: 20.7 E(): 16 banded Smith-Waterman score: 56; 64.865% identity (64.865% similar) in 37 nt overlap (45-11:3387-3423) 70 60 50 40 30 20 U0009- GGTGCCGATAATAGGAGTCGAACCTACGACCTTCG--CATTACGAATGCGCTGCTCTACC ::::: :: ::::::::: : : : : Z99123 TCATGCTGCCGGCGTCAGAGCCAGACCCTGCTTCGGTCAAAGCGAATGCGCCGATTTTCT 3360 3370 3380 3390 3400 3410 10 U0009- AACTGAGCTATATCGGC : ::: Z99123 CTCCGAGAGCCAGCTGTGTTAAGTACTCTGTCTTCTGTTCCTCTGTCCCAAAGGCAAACA 3420 3430 3440 3450 3460 3470 >>Z99106 Z99106 Bacillus subtilis complete genome (secti (195912 nt) initn: 50 init1: 50 opt: 56 Z-score: 51.0 bits: 20.7 E(): 16 banded Smith-Waterman score: 56; 72.727% identity (72.727% similar) in 22 nt overlap (12-33:20081-20102) 10 20 30 40 U00096 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGC ::: ::: :::::::::: Z99106 TCGTGTTGTTCATCGCAGTTCCGTGCGGAATCAAGTGGCGCGGCAGCGCATTGATTCCGG 20060 20070 20080 20090 20100 20110 50 60 70 U00096 GAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA Z99106 CTGTTGTCACCGGCATCATGATCATGGCGGTGCCTAAGAGACGAACGGTGTATAAAACGA 20120 20130 20140 20150 20160 20170 >>Z99122 Z99122 Bacillus subtilis complete genome (secti (200690 nt) rev-comp initn: 55 init1: 55 opt: 55 Z-score: 49.9 bits: 20.5 E(): 18 banded Smith-Waterman score: 55; 100.000% identity (100.000% similar) in 11 nt overlap (36-26:5963-5973) 60 50 40 30 20 10 U0009- AATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCGCTGCTCTACCAACTGAGCTAT ::::::::::: Z99122 CTTCCTGTTCCGGACGGGTTTATTATTCAAACGAATGCGCTCGCACGTTTTATGGAGGAC 5940 5950 5960 5970 5980 5990 U0009- ATCGGC Z99122 AACCAGCTTCAAGAGACTAGTGAAAACGTCGAAGGCGGGATCATTTCCGGAACATTTTCG 6000 6010 6020 6030 6040 6050 >>Z99108 Z99108 Bacillus subtilis complete genome (secti (197409 nt) initn: 55 init1: 55 opt: 55 Z-score: 49.9 bits: 20.5 E(): 18 banded Smith-Waterman score: 55; 100.000% identity (100.000% similar) in 11 nt overlap (62-72:21171-21181) 40 50 60 70 U00096 TTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA ::::::::::: Z99108 GTGTGGATAAAGTGGAAATTGCCAGAGCCTCTATTATCGGCCAGCCGATTCATATGCTGA 21150 21160 21170 21180 21190 21200 Z99108 GTCCGCTTGTGCCATCCACTCATTTGCTTGTCGGACTCGTCGGAGTTTCTATTGATGACC 21210 21220 21230 21240 21250 21260 >>Z99116 Z99116 Bacillus subtilis complete genome (secti (204537 nt) initn: 70 init1: 55 opt: 55 Z-score: 49.9 bits: 20.5 E(): 18 banded Smith-Waterman score: 55; 100.000% identity (100.000% similar) in 11 nt overlap (22-32:18284-18294) 10 20 30 40 50 U00096 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTA ::::::::::: Z99116 ATCAATGTCATTTGTGTCTACGCCATGTCTGAGCAGCGCATCTTCTGCTCCGCTCAGCAG 18260 18270 18280 18290 18300 18310 60 70 U00096 GGTTCGACTCCTATTATCGGCACCA Z99116 CTTGCTCGTAATAAAATCATTAAATCTTCCTACTACGATTCCGATTTTAAGACCTGTACC 18320 18330 18340 18350 18360 18370 >>Z99118 Z99118 Bacillus subtilis complete genome (secti (200707 nt) rev-comp initn: 80 init1: 55 opt: 55 Z-score: 49.9 bits: 20.5 E(): 18 banded Smith-Waterman score: 55; 100.000% identity (100.000% similar) in 11 nt overlap (76-66:11527-11537) 70 60 50 U0009- TGGTGCCGATAATAGGAGTCGAACCTACGA ::::::::::: Z99118 TTTCGTCATGCAGCGGGACTAGATCGGCAATGGTGCCGATAGCCGCCAGGTCAAGCAGTT 11500 11510 11520 11530 11540 11550 40 30 20 10 U0009- CCTTCGCATTACGAATGCGCTGCTCTACCAACTGAGCTATATCGGC Z99118 CATCAGGAAGTTCACCCAATAAAGCGTGGGCAAGCTTAAACGCGACTCCAACCCCGGCAA 11560 11570 11580 11590 11600 11610 76 residues in 1 query sequences 474432 residues in 21 library sequences Scomplib [34t25] start: Sat Dec 23 16:06:14 2006 done: Sat Dec 23 16:08:24 2006 Total Scan time: 0.040 Total Display time: 0.010 Function used was FASTA [version 3.4t25 Nov 12, 2004]