TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P00811 (377 letters) Database: pa 529 sequences; 6,296,083 total letters Searching..done Score E Sequences producing significant alignments: (bits) Value embl|AE004827|AE004827 Pseudomonas aeruginosa PAO1, section 388 ... 312 5e-86 embl|AE004537|AE004537 Pseudomonas aeruginosa PAO1, section 98 o... 61 2e-10 embl|AE004605|AE004605 Pseudomonas aeruginosa PAO1, section 166 ... 54 5e-08 embl|AE004851|AE004851 Pseudomonas aeruginosa PAO1, section 412 ... 40 4e-04 embl|AE004649|AE004649 Pseudomonas aeruginosa PAO1, section 210 ... 31 0.27 embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 o... 27 5.0 embl|AE004456|AE004456 Pseudomonas aeruginosa PAO1, section 17 o... 27 5.0 embl|AE004898|AE004898 Pseudomonas aeruginosa PAO1, section 459 ... 27 6.6 >embl|AE004827|AE004827 Pseudomonas aeruginosa PAO1, section 388 of 529 of the complete genome. Length = 11609 Score = 312 bits (800), Expect = 5e-86 Identities = 156/361 (43%), Positives = 233/361 (64%), Gaps = 2/361 (0%) Frame = +1 Query: 19 AAPQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFEL 78 A ++ +V + P+++ IPG+AVA+ +G+P+YF++G A + VT +TLFE+ Sbjct: 5527 APADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETLFEI 5706 Query: 79 GSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVP 138 GSVSKTFT L G A+ + +++L D +++WP L +++GI+LL LATYTAGGLPLQ P Sbjct: 5707 GSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRFDGISLLDLATYTAGGLPLQFP 5886 Query: 139 DEV-KSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQP 197 D V K + + +Y+ WQP +APG+QRLY+N SIGLFG LA + G FE+ M+ +VF Sbjct: 5887 DSVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQVFPA 6066 Query: 198 LKLNHTWINVPPAEEKNYAWGY-REGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKP 256 L L T ++VP A YA GY ++ + + V PG LDAE YGVK++ D+ R+V +NL P Sbjct: 6067 LGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHP 6246 Query: 257 LDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKA 316 + ++ Q + Y++ GDM QGLGWE DWP++ + G+ +AL + Sbjct: 6247 ERL-DRPWAQALDATHRGYYKVGDMTQGLGWEAYDWPISLKRLQAGNSTPMALQPHRIAR 6423 Query: 317 ITPPTPAVRASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNAL 376 + P ++KTG+T GFG+YVAF+P ++LG+V+LAN+NYPN RV A+ IL+ L Sbjct: 6424 LPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYPNAERVKIAYAILSGL 6603 Query: 377 Q 377 + Sbjct: 6604 E 6606 >embl|AE004537|AE004537 Pseudomonas aeruginosa PAO1, section 98 of 529 of the complete genome. Length = 13946 Score = 61.2 bits (147), Expect = 2e-10 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 8/175 (4%) Frame = +3 Query: 35 LIEQQKIPGMAVAVIYQGKPYYFTWG-YADIAKKQPVTQQTLFELGSVSKTFTGVLGGDA 93 L + + G A+ + G+ WG AD +QP + T+ L S +KTFT V Sbjct: 162 LFDNPQERGAALCLEVGGETVVDLWGGVADKDGEQPWQRDTILNLFSCTKTFTAVAVLQL 341 Query: 94 IARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYTAG--GLPLQVPDEV----KSSSDL 147 +A G+++L P YWPE A I++ L + AG L Q+P E ++ + Sbjct: 342 VAEGKLELDAPVAHYWPEFAAAGKAAISVRQLLCHRAGLPALREQMPPEALYDWQAMTTA 521 Query: 148 LRFYQNWQPAWAPGTQRLYANSSIG-LFGALAVKPSGLSFEQAMQTRVFQPLKLN 201 L + W W PG YA + G L G + + G +A+ R PL L+ Sbjct: 522 LAAEEPW---WTPGEAHGYAPITYGWLLGEVIRRVDGREPGEAIVARTAAPLGLD 677 >embl|AE004605|AE004605 Pseudomonas aeruginosa PAO1, section 166 of 529 of the complete genome. Length = 10949 Score = 53.5 bits (127), Expect = 5e-08 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 15/244 (6%) Frame = -2 Query: 23 QINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFT-WGYADIAKKQPVTQQTLFELGSV 81 ++ D + R I +E+Q +PG+A+A++ + + +GYAD + ++ T F G + Sbjct: 10756 EVIDYLQRHIRREMERQDVPGLALALVDDQQLVWARGFGYADRQHRINASEHTAFHAGDL 10577 Query: 82 SKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQW---------NGITLLHLATYTAG- 131 SK RG++ L P E + IT L ++ +G Sbjct: 10576 SKLLIASATLQLAERGQLSLDAPLQDTLREFYVRSRFHADQSEADRAITFRRLLSHQSGL 10397 Query: 132 ---GLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQ 188 LP + S L + PGTQ ++N L GA + +G FEQ Sbjct: 10396 PGEHLPPLFGERPNSLGQLPAKVSGVWLSNPPGTQVAHSNLGYELVGAAIERNTGKHFEQ 10217 Query: 189 AMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPG-ALDAEAYGVKSTIEDMA 247 M+ + PL++ + + A GY G PG A D + S+ D++ Sbjct: 10216 HMREHLLDPLQMTRSSFARNALPQAQRAHGYSGGG----RPGSASDLPVNDLWSSPVDLS 10049 Query: 248 RWVQ 251 R+V+ Sbjct: 10048 RFVR 10037 >embl|AE004851|AE004851 Pseudomonas aeruginosa PAO1, section 412 of 529 of the complete genome. Length = 13101 Score = 40.4 bits (93), Expect = 4e-04 Identities = 78/327 (23%), Positives = 122/327 (37%), Gaps = 14/327 (4%) Frame = -1 Query: 45 AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDP 104 AV VI G+ Y + A+ +T SVSK+ L G A G +L DP Sbjct: 2016 AVVVIRDGRLVYERYAGPSRAETPHLTW-------SVSKSLLATLLGVAEGEGRFQLDDP 1858 Query: 105 TTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDE---VKSS----------SDLLRFY 151 +Y+P + +TL HL +++ GL Q E +KSS D+ F Sbjct: 1857 VARYYPPFA--RHPEVTLRHLLNWSS-GLDWQEDYEFAPLKSSVVAMLYTRGRDDMAGFV 1687 Query: 152 QNWQPAWAPGTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKL-NHTWINVPPA 210 A PG + Y++ + A G + + +F+PL + + W Sbjct: 1686 AETPQARPPGRRFRYSSGDSNVLAAALHGMLGADYAEYPWRALFEPLGIRSAVW------ 1525 Query: 211 EEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDINEKTLQQGIQL 270 E++ A + V++S A D G+ ++ RW + L PL E L + Sbjct: 1524 -ERDAAGTFVGSSYVYMS--ARDLARVGL--LMQRHGRWRERQLLPLAWVEFNLTPFARY 1360 Query: 271 AQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVH 330 S + G+ G W W R VK P P V + Sbjct: 1359 RPSAE-EEGEAVPGGQW----W-----------------LNRAVKGAPAPWPDVAET--- 1255 Query: 331 KTGATGGFGSYVAFIPEKELGIVMLAN 357 A G +G + +PE++L IV A+ Sbjct: 1254 AFAALGHWGQALYVLPEEKLVIVRYAD 1174 >embl|AE004649|AE004649 Pseudomonas aeruginosa PAO1, section 210 of 529 of the complete genome. Length = 23425 Score = 31.2 bits (69), Expect = 0.27 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = -3 Query: 80 SVSKTFTGVLGGDAIARGEI-KLSDPTTKYWPELTAKQWNGITLLHLATYTAG 131 S+SK+ +L G A+ G I L DP Y P+L+A + G++L + ++G Sbjct: 5798 SLSKSLMSLLIGMAVDEGSIHSLLDPVNLYAPQLSAGGYAGVSLRDVLEMSSG 5640 >embl|AE004501|AE004501 Pseudomonas aeruginosa PAO1, section 62 of 529 of the complete genome. Length = 10832 Score = 26.9 bits (58), Expect = 5.0 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 Query: 308 ALAARPVKAITPPTPAVRASWVH 330 ALA+ P PPTP R SW H Sbjct: 465 ALASSPPARAMPPTPTSR*SWRH 397 >embl|AE004456|AE004456 Pseudomonas aeruginosa PAO1, section 17 of 529 of the complete genome. Length = 12534 Score = 26.9 bits (58), Expect = 5.0 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 316 AITPPTPAV--RASWVHKTGATGGFGSYVAFIPEKELGIVMLANKNYPNPA 364 A+ P PAV RAS TG TGG G + P + ++ P+PA Sbjct: 11258 AVPGPAPAVPPRASTPDSTGVTGGTGKTTSASP--------IGSRRAPSPA 11130 >embl|AE004898|AE004898 Pseudomonas aeruginosa PAO1, section 459 of 529 of the complete genome. Length = 10927 Score = 26.6 bits (57), Expect = 6.6 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Frame = +1 Query: 51 QGKPYYFTWGYADIAKKQPVT-QQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYW 109 +G+P + I +Q T + L E+G+VS TF DA + + TT W Sbjct: 5380 RGRPMPWLQVRLAITPEQAETYEDALLEVGAVSVTFM-----DAEDQPIFEPDLGTTPLW 5544 Query: 110 PE------LTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQ 163 A L HLA T G LP +E+ Q+W+ +W Q Sbjct: 5545 SRTHLLALFEADTDETALLAHLALLTGGDLPEHHVEEIAD--------QDWERSWMDNFQ 5700 Database: pa Posted date: Dec 23, 2006 3:09 PM Number of letters in database: 6,296,083 Number of sequences in database: 529 Lambda K H 0.317 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,118,119 Number of Sequences: 529 Number of extensions: 74443 Number of successful extensions: 494 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 360 Number of HSP's gapped (non-prelim): 190 length of query: 377 length of database: 2,098,694 effective HSP length: 90 effective length of query: 287 effective length of database: 2,051,084 effective search space: 588661108 effective search space used: 588661108 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)