TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P00811 (377 letters) Database: pm 204 sequences; 2,269,587 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value embl|AE006202|AE006202 Pasteurella multocida subsp. multocida st... 27 1.4 embl|AE006062|AE006062 Pasteurella multocida subsp. multocida st... 27 1.9 embl|AE006174|AE006174 Pasteurella multocida subsp. multocida st... 27 2.4 embl|AE006154|AE006154 Pasteurella multocida subsp. multocida st... 26 3.2 embl|AE006076|AE006076 Pasteurella multocida subsp. multocida st... 26 3.2 embl|AE006223|AE006223 Pasteurella multocida subsp. multocida st... 26 4.2 embl|AE006097|AE006097 Pasteurella multocida subsp. multocida st... 25 7.1 embl|AE006224|AE006224 Pasteurella multocida subsp. multocida st... 25 9.2 >embl|AE006202|AE006202 Pasteurella multocida subsp. multocida str. Pm70 section 169 of 204 of the complete genome. Length = 10029 Score = 27.3 bits (59), Expect = 1.4 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 39 QKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELG 79 QK+P +I G TWGY + K++ ++ L E G Sbjct: 3880 QKLPENVRKIIEAGAKEAQTWGYQEAEKRESELEKKLVESG 4002 >embl|AE006062|AE006062 Pasteurella multocida subsp. multocida str. Pm70 section 29 of 204 of the complete genome. Length = 10419 Score = 26.9 bits (58), Expect = 1.9 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Frame = -3 Query: 24 INDIVHRTITPLIEQQKIPGMAVAVIYQ---GKPYYF 57 INDI HR IT + K+P +A A+ Y+ G+P+ F Sbjct: 5488 INDITHREITAIRLLAKMPTLA-AMCYKYSIGQPFMF 5381 >embl|AE006174|AE006174 Pasteurella multocida subsp. multocida str. Pm70 section 141 of 204 of the complete genome. Length = 11211 Score = 26.6 bits (57), Expect = 2.4 Identities = 45/184 (24%), Positives = 67/184 (36%), Gaps = 2/184 (1%) Frame = -1 Query: 175 GALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDA 234 GA V S + F Q + + L +N + +N EK G A H+ PG Sbjct: 6015 GAKGVSQSAVDFAQELDAVLL--LVVNASQVNTVLFGEK--------GLASHLKPGT--- 5875 Query: 235 EAYGVKSTIEDMARWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPV 294 A V STI + Q Q++Q GLG MLD PV Sbjct: 5874 -AVMVSSTI-------------------SAQDAQQISQK--------LTGLGLVMLDAPV 5779 Query: 295 NPDSIINGSDNKIALAARPVKAITPPTPAVR--ASWVHKTGATGGFGSYVAFIPEKELGI 352 + + + +A+ +A T P + A V+ G G G+ V I + G+ Sbjct: 5778 SGGAAKAAAGEMTVMASGSQQAFTKLQPVLDAVAGKVYNIGEEIGLGATVKIIHQLLAGV 5599 Query: 353 VMLA 356 + A Sbjct: 5598 HIAA 5587 >embl|AE006154|AE006154 Pasteurella multocida subsp. multocida str. Pm70 section 121 of 204 of the complete genome. Length = 11090 Score = 26.2 bits (56), Expect = 3.2 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -3 Query: 1 MFKTTLCALLITASCSTFAAPQQINDIVHR 30 +F+TT+ L +TA+C+ + Q D H+ Sbjct: 1050 LFRTTILCLTVTANCAKIRSNQFPRDDAHK 961 >embl|AE006076|AE006076 Pasteurella multocida subsp. multocida str. Pm70 section 43 of 204 of the complete genome. Length = 10206 Score = 26.2 bits (56), Expect = 3.2 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Frame = -2 Query: 245 DMARWVQSNLKPLDINEKTLQQGIQLAQSRYWQTGDMY-------QGLGWEMLDWPVNPD 297 D+A +VQ + DI + Q YWQ Y QG+GW ++ + D Sbjct: 2282 DLAHFVQLIHRNADITPISPQ---------YWQINSYYLMMDLVNQGIGWAIMPEQLLVD 2130 Query: 298 SIINGSDNKIALAA 311 + N++ L A Sbjct: 2129 EFLGSQLNRLPLTA 2088 >embl|AE006223|AE006223 Pasteurella multocida subsp. multocida str. Pm70 section 190 of 204 of the complete genome. Length = 10227 Score = 25.8 bits (55), Expect = 4.2 Identities = 13/45 (28%), Positives = 19/45 (42%) Frame = +2 Query: 6 LCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGMAVAVIY 50 +C I A C+ Q I+ RT+ P+ I + VIY Sbjct: 3938 VCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY 4072 >embl|AE006097|AE006097 Pasteurella multocida subsp. multocida str. Pm70 section 64 of 204 of the complete genome. Length = 10029 Score = 25.0 bits (53), Expect = 7.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 115 KQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQ 152 KQ++ IT H + G +P ++SSSD +FY+ Sbjct: 2797 KQYHSITDYHAMMFDLG----IIPKRLRSSSDRSKFYK 2898 >embl|AE006224|AE006224 Pasteurella multocida subsp. multocida str. Pm70 section 191 of 204 of the complete genome. Length = 11215 Score = 24.6 bits (52), Expect = 9.2 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 324 VRASWVHKTGATGGFGSY 341 V A W +K GATGG Y Sbjct: 6141 VAAHWKYKEGATGGRSGY 6088 Database: pm Posted date: Sep 19, 2006 6:35 PM Number of letters in database: 2,269,587 Number of sequences in database: 204 Lambda K H 0.317 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 961,964 Number of Sequences: 204 Number of extensions: 13039 Number of successful extensions: 61 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 23 length of query: 377 length of database: 756,529 effective HSP length: 83 effective length of query: 294 effective length of database: 739,597 effective search space: 217441518 effective search space used: 217441518 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)