FastQCFastQC Report
Сб 6 дек 2014
Ath_tae_CTTGTA_L003_R2_003.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R2_003.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA5350.014.20027746-47
TGGCCCG3507.2628227E-613.5726155
GGCCCGG3952.5168676E-512.0278726
TGGTCGC7350.011.950442-43
GTCGCCG8150.010.19562344-45
CCCGGGG4801.822561E-49.8990518
GGGCGCC2250.00111917629.49572442-43
GGTCGCC5805.456968E-129.41386542-43
AGCGTCG7950.09.26401810-11
GCCCGGG5304.925845E-48.96517857
CCGTATC9650.08.12252248-49
AAGAGCG13207.1304385E-107.91924058
TCGGGGG6059.638825E-97.84770638-39
TCGGTGG11350.07.738805338-39
AGAGCGT11704.3546606E-87.7161839
GAGCGTC7602.56952E-57.5024389
GCGGCCG3300.00432427937.1936436-37
CCGGGGG7355.53898E-47.1111559
CGTCGTG9409.094947E-127.0760612-13
GGCCCCC3700.00167647887.05820644-45
Produced by FastQC (version 0.11.2)