######################################## # Program: needle # Rundate: Thu 11 Feb 2016 06:42:06 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20160211-064205-0968-39359512-pg.asequence # -bsequence emboss_needle-I20160211-064205-0968-39359512-pg.bsequence # -datafile EDNAFULL # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -snucleotide1 # -snucleotide2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: KJ530683.1 # 2: 2976 # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 362 # Identity: 344/362 (95.0%) # Similarity: 347/362 (95.9%) # Gaps: 15/362 ( 4.1%) # Score: 1723.0 # # #======================================= KJ530683.1 1 ---ACCGGAGGCAAGGCCCCCAGGAAGCAGCTGGCCACCAAGGCAGCTCG 47 ||||||||||||||||||||||||||||||||||||||||||||||| 2976 1 tcTACCGGagGCAAGGCCCCCAGGAaGCAGCTGGCCACCAAGGCAGCTCG 50 KJ530683.1 48 CAAGAGTGCCCCAGCAACTGGTGGAGTGAAGAAGCCCCATCGTTACAGGC 97 |||||||||||||||||||||||||||||||||||||||||||||||||| 2976 51 CAAGAGTGCCCCAGCAACTGGTGGAGTGAAGAAGCCCCATCGTTACAGGC 100 KJ530683.1 98 CTGGCACAGTTGCTCTGCGTGAGATCCGTCGTTACCAGAAGAGCACAGAG 147 |||||||||||||||||||||||||||||||||||||||||||||||||| 2976 101 CTGGCACAGTTGCTCTGCGTGAGATCCGTCGTTACCAGAAGAGCACAGAG 150 KJ530683.1 148 CTGCTGATCCGCAAGCTGCCATTCCAGCGTCTGGTGCGTGAGATCGCCCA 197 |||||||||||||||||||||||||||||||||||||||||||||||||| 2976 151 CTGCTGATCCGCAAGCTGCCATTCCAGCGTCTGGTGCGTGAGATCGCCCA 200 KJ530683.1 198 GGACTTCAAGACTGACCTGCGCTTCCAGAGCTCTGCTGTCATGGCTTTGC 247 |||||||||||||||||||||||||||||||||||||||||||||||||| 2976 201 GGACTTCAAGACTGACCTGCGCTTCCAGAGCTCTGCTGTCATGGCTTTGC 250 KJ530683.1 248 AGGAGGCTAGCGAGGCTTACCTGGTTGGCCTGTTCGAGGACACCAACTTG 297 |||||||||||||||||||||||||||||||||||||||||||||||||| 2976 251 AGGAGGCTAGCGAGGCTTACCTGGTTGGCCTGTTCGAGGACACCAACTTG 300 KJ530683.1 298 TGCGCCATCCACGCCAAGCGTGTCACYATYATGCCTAAGGATATGTCATA 347 ||||||||||||||||||||||||||.||.|||||:|||||||||||||| 2976 301 TGCGCCATCCACGCCAAGCGTGTCACtATtATGCCyAAGGATATGTCATA 350 KJ530683.1 348 ------------ 347 2976 351 GCTGTTTCCdga 362 #--------------------------------------- #---------------------------------------