Started analysis of chr9.1.fastq
Approx 5% complete for chr9.1.fastq
Approx 10% complete for chr9.1.fastq
Approx 15% complete for chr9.1.fastq
Approx 20% complete for chr9.1.fastq
Approx 25% complete for chr9.1.fastq
Approx 30% complete for chr9.1.fastq
Approx 35% complete for chr9.1.fastq
Approx 40% complete for chr9.1.fastq
Approx 45% complete for chr9.1.fastq
Approx 50% complete for chr9.1.fastq
Approx 55% complete for chr9.1.fastq
Approx 60% complete for chr9.1.fastq
Approx 65% complete for chr9.1.fastq
Approx 70% complete for chr9.1.fastq
Approx 75% complete for chr9.1.fastq
Approx 80% complete for chr9.1.fastq
Approx 85% complete for chr9.1.fastq
Approx 90% complete for chr9.1.fastq
Approx 95% complete for chr9.1.fastq
Analysis complete for chr9.1.fastq
Started analysis of chr9.2.fastq
Approx 5% complete for chr9.2.fastq
Approx 10% complete for chr9.2.fastq
Approx 20% complete for chr9.2.fastq
Approx 25% complete for chr9.2.fastq
Approx 35% complete for chr9.2.fastq
Approx 40% complete for chr9.2.fastq
Approx 45% complete for chr9.2.fastq
Approx 55% complete for chr9.2.fastq
Approx 60% complete for chr9.2.fastq
Approx 70% complete for chr9.2.fastq
Approx 75% complete for chr9.2.fastq
Approx 85% complete for chr9.2.fastq
Approx 90% complete for chr9.2.fastq
Approx 95% complete for chr9.2.fastq
Analysis complete for chr9.2.fastq
19976 reads; of these:
  19976 (100.00%) were unpaired; of these:
    115 (0.58%) aligned 0 times
    19680 (98.52%) aligned exactly 1 time
    181 (0.91%) aligned >1 times
99.42% overall alignment rate
14020 reads; of these:
  14020 (100.00%) were unpaired; of these:
    83 (0.59%) aligned 0 times
    13811 (98.51%) aligned exactly 1 time
    126 (0.90%) aligned >1 times
99.41% overall alignment rate
***** WARNING: File /P/y14/term3/block4/SNP/rnaseq_reads/gencode.genes.bed has inconsistent naming convention for record:
GL877870.2	2348	2545	pseudogene	CICP10

***** WARNING: File /P/y14/term3/block4/SNP/rnaseq_reads/gencode.genes.bed has inconsistent naming convention for record:
GL877870.2	2348	2545	pseudogene	CICP10

***** WARNING: File /P/y14/term3/block4/SNP/rnaseq_reads/gencode.genes.bed has inconsistent naming convention for record:
GL877870.2	2348	2545	pseudogene	CICP10

***** WARNING: File /P/y14/term3/block4/SNP/rnaseq_reads/gencode.genes.bed has inconsistent naming convention for record:
GL877870.2	2348	2545	pseudogene	CICP10