########################################
# Program: needle
# Rundate: Thu  6 Mar 2008 01:00:31
# Commandline: needle
#    -asequence ILVC_ECOLI.fasta
#    -bsequence ILVC_YERPA.fasta
#    -outfile coli_yerpa.txt
# Align_format: srspair
# Report_file: coli_yerpa.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: ILVC_ECOLI
# 2: ILVC_YERPA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity:     453/492 (92.1%)
# Similarity:   465/492 (94.5%)
# Gaps:           1/492 ( 0.2%)
# Score: 2318.0
# 
#
#=======================================

ILVC_ECOLI         1 MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGL     50
                     |||||||||||||||||||||||.||||||.|.||:||||||||||||||
ILVC_YERPA         1 manyfntlnlrqqlaqlgkcrfmardefadeagylkgkkvvivgcgaqgl     50

ILVC_ECOLI        51 NQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQAD    100
                     ||||||||||||::||||||||||||||||||||||||||||||||||||
ILVC_YERPA        51 nqglnmrdsgldvayalrkeaiaekraswrkatengfkvgtyeelipqad    100

ILVC_ECOLI       101 LVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVV    150
                     ||:|||||||||.||:.||||||:||||||||||||||||||:|||||||
ILVC_YERPA       101 lvvnltpdkqhsavvkavqplmkegaalgyshgfnivevgeqvrkditvv    150

ILVC_ECOLI       151 MVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ILVC_YERPA       151 mvapkcpgtevreeykrgfgvptliavhpendpkgegmaiakawaaatgg    200

ILVC_ECOLI       201 HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYA    250
                     |||||||.|||||||||||||||||||||||||||||||||.||||.|||
ILVC_YERPA       201 hragvlefsfvaevksdlmgeqtilcgmlqagsllcfdklvsegtdaaya    250

ILVC_ECOLI       251 EKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQLKEIMAPLF    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
ILVC_YERPA       251 ekliqfgwetitealkqggitlmmdrlsnpaklrayalseqlkeimaplf    300

ILVC_ECOLI       301 QKHMDDIISGEFSSGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIG    350
                     ||||||||||.|||||||||||||.|||.||||||:||||.|||:||||.
ILVC_YERPA       301 qkhmddiisgafssgmmadwanddvkllnwreetgrtafenapqfegkis    350

ILVC_ECOLI       351 EQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELPLIANT    400
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
ILVC_YERPA       351 eqeyfdhgvlmiamvkagvelafetmvdsgiieesayyeslhelpliant    400

ILVC_ECOLI       401 IARKRLYEMNVVISDTAEYGNYLFSYACVPLLK-PFMAELQPGDLGKAIP    449
                     ||||||||||||||||||||||||:.|.||||| .||..||.|||||:||
ILVC_YERPA       401 iarkrlyemnvvisdtaeygnylfanaavpllkekfmdslqagdlgksip    450

ILVC_ECOLI       450 EGAVDNGQLRDVNEAIRSHAIEQVGKKLRGYMTDMKRIAVAG    491
                     ..||||.||||||||||:|.||.||.||||||||||||||||
ILVC_YERPA       451 gsavdnaqlrdvneairnhpieavghklrgymtdmkriavag    492


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