######################################## # Program: needle # Rundate: Thu 6 Mar 2008 01:01:26 # Commandline: needle # -asequence ECOLIGEN.fasta # -bsequence yerpagen.fasta # -outfile coli_yerpagen.txt # Align_format: srspair # Report_file: coli_yerpagen.txt ######################################## #======================================= # # Aligned_sequences: 2 # 1: M11689 # 2: CP000308 # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1493 # Identity: 1240/1493 (83.1%) # Similarity: 1240/1493 (83.1%) # Gaps: 31/1493 ( 2.1%) # Score: 5192.0 # # #======================================= M11689 1 atggctaactacttcaatacactgaatctgcgccagcagctggcacagct 50 |||||||||||.|||||.|||.||||.|||||.||||||.||||.||..| CP000308 1 atggctaactatttcaacacattgaacctgcgtcagcagttggcgcaatt 50 M11689 51 gggcaaatgtcgctttatgggccgcgatgaattcgccgatggcgcgagct 100 .||.||.|||||||||||||..||.||.|||||.|||||||..||..||| CP000308 51 aggtaagtgtcgctttatggcacgtgacgaatttgccgatgaagccggct 100 M11689 101 accttcagggtaaaaaagtagtcatcgtcggctgtggcgcacagggtctg 150 ||||..|.||.||||||||.||.||.|||||.||||||||||||||.||| CP000308 101 acctgaaaggcaaaaaagtggtgattgtcggttgtggcgcacagggcctg 150 M11689 151 aaccagggcctgaacatgcgtgattctggtctcgatatctcctacgctct 200 |||||.||..|||||||||||||.||.||.||.|||.||.|.||.||.|| CP000308 151 aaccaagggttgaacatgcgtgactccggcctggatgtcgcttatgccct 200 M11689 201 gcgtaaagaagcgattgccgagaagcgcgcgtcctggcgtaaagcgaccg 250 |||||||||||||||||||||||||||.||.||.|||||||||||||||| CP000308 201 gcgtaaagaagcgattgccgagaagcgtgcttcatggcgtaaagcgaccg 250 M11689 251 aaaatggttttaaagtgggtacttacgaagaactgatcccacaggcggat 300 ||||||||||.|||||.||.|||||||||||..||||||||||||||||| CP000308 251 aaaatggtttcaaagtaggcacttacgaagagttgatcccacaggcggat 300 M11689 301 ctggtgattaacctgacgccggacaagcagcactctgatgtagt----gc 346 ||||||.|||||||||||||.||||||||||||||||..||.|| || CP000308 301 ctggtggttaacctgacgccagacaagcagcactctgccgtggttaaggc 350 M11689 347 gcaccgtacagccactgatgaaagacggcgcggcgctgggctactcgcac 396 | ||.|||||.|||||||||||.|||||.||.|||||.||||||||. CP000308 351 g----gttcagcctctgatgaaagagggcgcagcactgggttactcgcat 396 M11689 397 ggtttcaacatcgtcgaagtgggcgagcagatccgtaaagatatcaccgt 446 |||||||||||.||.||||||||.|||||..|.||||||||.|||||||| CP000308 397 ggtttcaacattgttgaagtgggtgagcaagtgcgtaaagacatcaccgt 446 M11689 447 agtgatggttgcgccgaaatgcccaggcaccgaagtgcgtgaagagtaca 496 .|||||||||||||||||||||||.||.||||||||.||||||||||||| CP000308 447 ggtgatggttgcgccgaaatgccctggtaccgaagttcgtgaagagtaca 496 M11689 497 aacgtgggttcggcgtaccgacgctgattgccgttcacccggaaaacgat 546 |||||||.||.||.||.||||||||||||||.|||||.||.||||||||. CP000308 497 aacgtggttttggtgtgccgacgctgattgcggttcatccagaaaacgac 546 M11689 547 ccgaaaggcgaaggcatggcgattgccaaagcctgggcggctgcaaccgg 596 ||.|||||||||||||||||||||||.|||||||||||.||.||.||||| CP000308 547 cctaaaggcgaaggcatggcgattgctaaagcctgggccgcggccaccgg 596 M11689 597 tggtcaccgtgcgggtgtgctggaatcgtccttcgttgcggaagtgaaat 646 ||||||||||||||||||.|||||||..||.||.|||||.|||||||||| CP000308 597 tggtcaccgtgcgggtgtactggaattttcttttgttgccgaagtgaaat 646 M11689 647 ctgacctgatgggcgagcaaaccatcctgtgcggtatgttgcaggctggc 696 ||||||||||||||||||||||.||||||||.||||||||||||||.||. CP000308 647 ctgacctgatgggcgagcaaactatcctgtgtggtatgttgcaggcgggt 696 M11689 697 tctctgctgtgcttcgacaagctggtggaagaaggtaccgatccagcata 746 ||.|||.|.||.|||||||||.||||...|||.|||||.|||.|.||.|| CP000308 697 tcactgttatgtttcgacaagttggtttcagagggtactgatgccgctta 746 M11689 747 cgcgaaaaaactgattcagttcggttgggaaaccatcaccgaagcactga 796 |||..|||||||||||||.|||||.|||||||||||.||||||||.|||| CP000308 747 cgctgaaaaactgattcaattcggctgggaaaccattaccgaagcgctga 796 M11689 797 aacagggcggcatcaccctgatgatggaccgtctctctaacccggcgaaa 846 ||||.|||||.|||||.|||||||||||||||.|.|||||.||.||.||| CP000308 797 aacaaggcgggatcacgctgatgatggaccgtttgtctaatccagcaaaa 846 M11689 847 ctgcgtgcttatgcgctttctgaacagctgaaagagatcatggcacccct 896 ||||||||.|||||..|.|||||||||.|||||||.||.|||||.||..| CP000308 847 ctgcgtgcgtatgcattatctgaacagttgaaagaaattatggcgccatt 896 M11689 897 gttccagaaacatatggacgacatcatctccggcgaattctcttccggta 946 ||||||||||||.|||||||||||.||.||.||.|..|||||...|||.| CP000308 897 gttccagaaacacatggacgacattatttctggtgcgttctccagcggca 946 M11689 947 tgatggcggactgggccaacgatga---taagaaactgctgacctggcgt 993 |||||||.||||||||.|||||||| |||| .||.|||.||||||| CP000308 947 tgatggctgactgggctaacgatgacgttaag---ttgttgaactggcgt 993 M11689 994 gaagagaccggcaaaaccgcgtttgaaaccgcgccgcagtatgaaggcaa 1043 |||||||||||||.|||.||.|||||||..|||||.||||.||||||||| CP000308 994 gaagagaccggcagaacggcttttgaaaatgcgccacagtttgaaggcaa 1043 M11689 1044 aatcggcgagcaggagtacttcgataaaggcgtactgatgattgcgatgg 1093 .|||...||||||||.||.||.||..|.||||||||||||||.||||||| CP000308 1044 gatctctgagcaggaatattttgaccacggcgtactgatgatcgcgatgg 1093 M11689 1094 tgaaagcgggcgttgaactggcgttcgaaaccatggtcgattccggcatc 1143 |.||||||||.|||||.|||||.||||||||||||||.|||||||||||. CP000308 1094 taaaagcgggagttgagctggcattcgaaaccatggtggattccggcatt 1143 M11689 1144 attgaagagtctgcatattatgaatcactgcacgagctgccgctgattgc 1193 ||||||||||||||.||.||.|||||.|||||||||||||||.||||||| CP000308 1144 attgaagagtctgcttactacgaatctctgcacgagctgccgttgattgc 1193 M11689 1194 caacaccatcgcccgtaagcgtctgtacgaaatgaacgtggttatctctg 1243 ||||||.||||||||||||||||||||.|||||||||||||||||||||| CP000308 1194 caacactatcgcccgtaagcgtctgtatgaaatgaacgtggttatctctg 1243 M11689 1244 ataccgctgagtacggtaactatctgttctcttacgcttgtgtgccgttg 1293 |||||||.||.|||||||||||..||||..||.|.||....||||||||| CP000308 1244 ataccgcagaatacggtaactacttgtttgctaatgcagcggtgccgttg 1293 M11689 1294 ctgaaa---ccgtttatgg----cagagctgcaaccgggcgacctgggta 1336 |||||| ..|||||||| | ||||||.|.||.|||.|||||| CP000308 1294 ctgaaagagaagtttatggattcc----ctgcaagccggtgacttgggta 1339 M11689 1337 aagctattcc-ggaaggcgcggtagataacgggcaactgcgtgatgtgaa 1385 ||..|||.|| ||...| |||||||||||||..||||||||||||||||| CP000308 1340 aaagtatccctggttcg-gcggtagataacgcacaactgcgtgatgtgaa 1388 M11689 1386 cgaagcgattcgcagccatgcgattgagcag--gtaggtaagaaactgcg 1433 .|||||.|||||||..||..||||.|| || ||.|||.|.||.||||| CP000308 1389 tgaagccattcgcaatcacccgatcga--agccgttggtcataagctgcg 1436 M11689 1434 cggctatatgacagatatgaaacgtattgctgttgcgggttaa 1476 .||.||.||||||||||||||.|||||||||||||||||.||| CP000308 1437 tggttacatgacagatatgaagcgtattgctgttgcgggctaa 1479 #--------------------------------------- #---------------------------------------