########################################
# Program: needle
# Rundate: Thu  6 Mar 2008 23:23:29
# Commandline: needle
#    -asequence ECOLIGEN.fasta
#    -bsequence yerpagen.fasta
#    -outfile coli_yerpagen3.txt
#    -gapopen 20
# Align_format: srspair
# Report_file: coli_yerpagen3.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: M11689
# 2: CP000308
# Matrix: EDNAFULL
# Gap_penalty: 20.0
# Extend_penalty: 0.5
#
# Length: 1479
# Identity:    1231/1479 (83.2%)
# Similarity:  1231/1479 (83.2%)
# Gaps:           3/1479 ( 0.2%)
# Score: 5154.0
# 
#
#=======================================

M11689             1 atggctaactacttcaatacactgaatctgcgccagcagctggcacagct     50
                     |||||||||||.|||||.|||.||||.|||||.||||||.||||.||..|
CP000308           1 atggctaactatttcaacacattgaacctgcgtcagcagttggcgcaatt     50

M11689            51 gggcaaatgtcgctttatgggccgcgatgaattcgccgatggcgcgagct    100
                     .||.||.|||||||||||||..||.||.|||||.|||||||..||..|||
CP000308          51 aggtaagtgtcgctttatggcacgtgacgaatttgccgatgaagccggct    100

M11689           101 accttcagggtaaaaaagtagtcatcgtcggctgtggcgcacagggtctg    150
                     ||||..|.||.||||||||.||.||.|||||.||||||||||||||.|||
CP000308         101 acctgaaaggcaaaaaagtggtgattgtcggttgtggcgcacagggcctg    150

M11689           151 aaccagggcctgaacatgcgtgattctggtctcgatatctcctacgctct    200
                     |||||.||..|||||||||||||.||.||.||.|||.||.|.||.||.||
CP000308         151 aaccaagggttgaacatgcgtgactccggcctggatgtcgcttatgccct    200

M11689           201 gcgtaaagaagcgattgccgagaagcgcgcgtcctggcgtaaagcgaccg    250
                     |||||||||||||||||||||||||||.||.||.||||||||||||||||
CP000308         201 gcgtaaagaagcgattgccgagaagcgtgcttcatggcgtaaagcgaccg    250

M11689           251 aaaatggttttaaagtgggtacttacgaagaactgatcccacaggcggat    300
                     ||||||||||.|||||.||.|||||||||||..|||||||||||||||||
CP000308         251 aaaatggtttcaaagtaggcacttacgaagagttgatcccacaggcggat    300

M11689           301 ctggtgattaacctgacgccggacaagcagcactctgatgtagtgcgcac    350
                     ||||||.|||||||||||||.||||||||||||||||..||.||.....|
CP000308         301 ctggtggttaacctgacgccagacaagcagcactctgccgtggttaaggc    350

M11689           351 cgtacagccactgatgaaagacggcgcggcgctgggctactcgcacggtt    400
                     .||.|||||.|||||||||||.|||||.||.|||||.||||||||.||||
CP000308         351 ggttcagcctctgatgaaagagggcgcagcactgggttactcgcatggtt    400

M11689           401 tcaacatcgtcgaagtgggcgagcagatccgtaaagatatcaccgtagtg    450
                     |||||||.||.||||||||.|||||..|.||||||||.||||||||.|||
CP000308         401 tcaacattgttgaagtgggtgagcaagtgcgtaaagacatcaccgtggtg    450

M11689           451 atggttgcgccgaaatgcccaggcaccgaagtgcgtgaagagtacaaacg    500
                     ||||||||||||||||||||.||.||||||||.|||||||||||||||||
CP000308         451 atggttgcgccgaaatgccctggtaccgaagttcgtgaagagtacaaacg    500

M11689           501 tgggttcggcgtaccgacgctgattgccgttcacccggaaaacgatccga    550
                     |||.||.||.||.||||||||||||||.|||||.||.||||||||.||.|
CP000308         501 tggttttggtgtgccgacgctgattgcggttcatccagaaaacgacccta    550

M11689           551 aaggcgaaggcatggcgattgccaaagcctgggcggctgcaaccggtggt    600
                     ||||||||||||||||||||||.|||||||||||.||.||.|||||||||
CP000308         551 aaggcgaaggcatggcgattgctaaagcctgggccgcggccaccggtggt    600

M11689           601 caccgtgcgggtgtgctggaatcgtccttcgttgcggaagtgaaatctga    650
                     ||||||||||||||.|||||||..||.||.|||||.||||||||||||||
CP000308         601 caccgtgcgggtgtactggaattttcttttgttgccgaagtgaaatctga    650

M11689           651 cctgatgggcgagcaaaccatcctgtgcggtatgttgcaggctggctctc    700
                     ||||||||||||||||||.||||||||.||||||||||||||.||.||.|
CP000308         651 cctgatgggcgagcaaactatcctgtgtggtatgttgcaggcgggttcac    700

M11689           701 tgctgtgcttcgacaagctggtggaagaaggtaccgatccagcatacgcg    750
                     ||.|.||.|||||||||.||||...|||.|||||.|||.|.||.|||||.
CP000308         701 tgttatgtttcgacaagttggtttcagagggtactgatgccgcttacgct    750

M11689           751 aaaaaactgattcagttcggttgggaaaccatcaccgaagcactgaaaca    800
                     .|||||||||||||.|||||.|||||||||||.||||||||.||||||||
CP000308         751 gaaaaactgattcaattcggctgggaaaccattaccgaagcgctgaaaca    800

M11689           801 gggcggcatcaccctgatgatggaccgtctctctaacccggcgaaactgc    850
                     .|||||.|||||.|||||||||||||||.|.|||||.||.||.|||||||
CP000308         801 aggcgggatcacgctgatgatggaccgtttgtctaatccagcaaaactgc    850

M11689           851 gtgcttatgcgctttctgaacagctgaaagagatcatggcacccctgttc    900
                     ||||.|||||..|.|||||||||.|||||||.||.|||||.||..|||||
CP000308         851 gtgcgtatgcattatctgaacagttgaaagaaattatggcgccattgttc    900

M11689           901 cagaaacatatggacgacatcatctccggcgaattctcttccggtatgat    950
                     ||||||||.|||||||||||.||.||.||.|..|||||...|||.|||||
CP000308         901 cagaaacacatggacgacattatttctggtgcgttctccagcggcatgat    950

M11689           951 ggcggactgggccaacgatgataagaaactgctgacctggcgtgaagaga   1000
                     |||.||||||||.||||||||....||..||.|||.||||||||||||||
CP000308         951 ggctgactgggctaacgatgacgttaagttgttgaactggcgtgaagaga   1000

M11689          1001 ccggcaaaaccgcgtttgaaaccgcgccgcagtatgaaggcaaaatcggc   1050
                     ||||||.|||.||.|||||||..|||||.||||.|||||||||.|||...
CP000308        1001 ccggcagaacggcttttgaaaatgcgccacagtttgaaggcaagatctct   1050

M11689          1051 gagcaggagtacttcgataaaggcgtactgatgattgcgatggtgaaagc   1100
                     ||||||||.||.||.||..|.||||||||||||||.||||||||.|||||
CP000308        1051 gagcaggaatattttgaccacggcgtactgatgatcgcgatggtaaaagc   1100

M11689          1101 gggcgttgaactggcgttcgaaaccatggtcgattccggcatcattgaag   1150
                     |||.|||||.|||||.||||||||||||||.|||||||||||.|||||||
CP000308        1101 gggagttgagctggcattcgaaaccatggtggattccggcattattgaag   1150

M11689          1151 agtctgcatattatgaatcactgcacgagctgccgctgattgccaacacc   1200
                     |||||||.||.||.|||||.|||||||||||||||.|||||||||||||.
CP000308        1151 agtctgcttactacgaatctctgcacgagctgccgttgattgccaacact   1200

M11689          1201 atcgcccgtaagcgtctgtacgaaatgaacgtggttatctctgataccgc   1250
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
CP000308        1201 atcgcccgtaagcgtctgtatgaaatgaacgtggttatctctgataccgc   1250

M11689          1251 tgagtacggtaactatctgttctcttacgcttgtgtgccgttgctgaaa-   1299
                     .||.|||||||||||..||||..||.|.||....||||||||||||||| 
CP000308        1251 agaatacggtaactacttgtttgctaatgcagcggtgccgttgctgaaag   1300

M11689          1300 --ccgtttatggcagagctgcaaccgggcgacctgggtaaagctattccg   1347
                       ..||||||||.....||||||.|.||.|||.||||||||..|||.||.
CP000308        1301 agaagtttatggattccctgcaagccggtgacttgggtaaaagtatccct   1350

M11689          1348 gaaggcgcggtagataacgggcaactgcgtgatgtgaacgaagcgattcg   1397
                     |.....|||||||||||||..|||||||||||||||||.|||||.|||||
CP000308        1351 ggttcggcggtagataacgcacaactgcgtgatgtgaatgaagccattcg   1400

M11689          1398 cagccatgcgattgagcaggtaggtaagaaactgcgcggctatatgacag   1447
                     ||..||..||||.||....||.|||.|.||.|||||.||.||.|||||||
CP000308        1401 caatcacccgatcgaagccgttggtcataagctgcgtggttacatgacag   1450

M11689          1448 atatgaaacgtattgctgttgcgggttaa   1476
                     |||||||.|||||||||||||||||.|||
CP000308        1451 atatgaagcgtattgctgttgcgggctaa   1479


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