FastQCFastQC Report
Βρ 7 δεκ 2014
Ath_tae_CTTGTA_L003_R2_004.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R2_004.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGCCCG3801.1261927E-613.7479065
GGCCCGG3558.438761E-613.3767396
CGCCGTA6950.011.95651646-47
TGGTCGC7350.010.98252442-43
GCCCGGG4701.4829371E-410.1034547
CCGTATC9200.010.067471548-49
GGTCGCC5451.8189894E-1210.0197844-45
GTCGCCG8800.09.98265244-45
ATGGCCC5751.0276133E-59.9128984
AGCGTCG8150.09.90696210-11
CCCGGGG4952.4978406E-49.5938988
TCGGTGG10750.09.27701938-39
CGTCGTG9450.08.79539712-13
AGAGCGT12954.8930815E-108.0677649
GAGCGTC8256.299342E-88.0588749
GTACCCT6250.0025272977.5998884
GGGGCCC4201.0658795E-47.34887644-45
GGTGGTC13500.07.210511740-41
GGGCCCC3450.0066488266.88189144-45
AAGAGCG15201.2394594E-86.8735238
Produced by FastQC (version 0.11.2)