RID: B06V13KB014 Job Title:POLN_TYMV P10358 Non-structural replication Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: POLN_TYMV P10358 Non-structural replication polyprotein {ECO:0000305} (206 kDa polyprotein) (206K) (Methyltransferase/Protease/Ubiquitinyl hydrolase) (2.1.1.-) (3.4.19.12 {ECO:0000269|PubMed:22117220, ECO:0000269|PubMed:23345508, ECO:0000269|PubMed:23966860}) (3.4.22.- {ECO:0000269|PubMed:17686855, ECO:0000269|PubMed:22117220, ECO:0000269|PubMed:23345508}) (98 kDa protein {ECO:0000303|PubMed:17686855}) (MET/PRO) (Putative helicase) (3.6.4.-) (42 kDa protein {ECO:0000303|PubMed:17686855}) (HEL) (RNA-directed RNA polymerase) (2.7.7.48) (66 kDa protein {ECO:0000303|PubMed:17686855}) (POL) Query ID: lcl|Query_1037048 Length: 879 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Non-structural replication polyprotein; AltName:... Turnip yello... NA 12154 1752 1752 100% 0.0 100.00 1844 P10358.2 RecName: Full=Non-structural replication polyprotein; AltName:... Turnip yello... NA 31751 1746 1746 100% 0.0 99.54 1844 P28477.1 RecName: Full=Non-structural replication polyprotein; AltName:... Turnip yello... NA 12155 1573 1573 100% 0.0 94.88 1844 P20128.1 RecName: Full=Non-structural replication polyprotein; Contains... Ononis yello... NA 12153 573 573 100% 0.0 41.69 1776 P20127.1 RecName: Full=Non-structural replication polyprotein; Contains... Eggplant mos... NA 12151 572 572 100% 0.0 44.08 1839 P20126.2 RecName: Full=Non-structural replication polyprotein; Contains... Erysimum lat... NA 12152 387 488 63% 3e-114 52.00 1748 P35928.1 RecName: Full=Genome polyprotein; Contains: RecName:... Maize rayado... NA 652669 369 466 62% 1e-107 49.02 2028 Q91TW9.2 RecName: Full=Non-structural replication polyprotein; Contains... Grapevine fl... NA 652668 310 381 62% 6e-88 46.60 1949 Q8UZB6.1 RecName: Full=Non-structural replication polyprotein; Contains... Kennedya yel... NA 36392 154 154 21% 8e-37 46.99 1874 P36304.1 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686946 108 108 39% 1e-22 27.64 1896 Q9DRA1.1 RecName: Full=RNA replication protein; Includes: RecName:... Sclerotinia ... NA 686987 106 106 26% 5e-22 32.47 1700 Q6YI57.2 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus... NA 12184 103 103 33% 3e-21 27.36 1456 P22591.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus X NA 12183 102 102 35% 6e-21 27.44 1456 P09395.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus... NA 12185 102 102 35% 9e-21 27.44 1456 P17779.1 RecName: Full=RNA replication protein; AltName: Full=147 kDa... White clover... NA 12190 99.8 99.8 27% 5e-20 29.63 1294 P15402.1 RecName: Full=RNA replication protein; AltName: Full=147 kDa... White clover... NA 12189 99.0 99.0 27% 8e-20 30.04 1294 P09498.1 RecName: Full=RNA replication protein; AltName: Full=156 kDa... Plantago asi... NA 28354 99.0 99.0 27% 9e-20 30.65 1385 Q07518.1 RecName: Full=RNA replication protein; AltName: Full=152 kDa... Foxtail mosa... NA 12179 97.8 97.8 37% 2e-19 26.11 1335 P22168.1 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686947 97.1 97.1 28% 3e-19 30.16 1413 Q6YNQ7.1 RecName: Full=RNA replication protein; AltName: Full=165 kDa... Potato virus... NA 73488 95.9 95.9 35% 9e-19 25.75 1456 Q07630.1 RecName: Full=RNA replication protein; AltName: Full=186 kDa... Narcissus mo... NA 12180 90.1 90.1 27% 5e-17 26.19 1643 P15095.1 RecName: Full=RNA-directed RNA polymerase; Includes: RecName:... Lolium laten... NA 686945 88.2 88.2 23% 2e-16 31.96 1729 B1PS76.1 RecName: Full=RNA replication protein; AltName: Full=176 kDa... Papaya mosai... NA 12181 87.4 87.4 27% 4e-16 29.08 1547 P20951.1 RecName: Full=RNA replication protein; AltName: Full=194 kDa... Shallot virus X NA 31770 85.1 85.1 25% 2e-15 29.44 1718 Q04575.1 RecName: Full=RNA replication protein; Includes: RecName:... Indian citru... NA 651357 77.0 77.0 37% 6e-13 24.93 1658 Q918W3.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73472 58.2 58.2 24% 3e-07 27.15 1885 P54891.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73473 57.0 57.0 24% 7e-07 26.91 1884 P27738.1 Alignments: >RecName: Full=Non-structural replication polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus] Sequence ID: P10358.2 Length: 1844 Range 1: 1 to 879 Score:1752 bits(4537), Expect:0.0, Method:Compositional matrix adjust., Identities:879/879(100%), Positives:879/879(100%), Gaps:0/879(0%) Query 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL Sbjct 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 Query 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP Sbjct 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 Query 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD Sbjct 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 Query 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG Sbjct 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 Query 241 PVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 PVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP Sbjct 241 PVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 Query 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN Sbjct 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 Query 361 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI 420 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI Sbjct 361 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI 420 Query 421 TAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKLPHALQKAALLLLRP 480 TAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKLPHALQKAALLLLRP Sbjct 421 TAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKLPHALQKAALLLLRP 480 Query 481 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL 540 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL Sbjct 481 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL 540 Query 541 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF 600 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF Sbjct 541 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF 600 Query 601 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQNSDLALESSTSTEPPPPPIRSPDMTP 660 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQNSDLALESSTSTEPPPPPIRSPDMTP Sbjct 601 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQNSDLALESSTSTEPPPPPIRSPDMTP 660 Query 661 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPA 720 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPA Sbjct 661 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPA 720 Query 721 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT 780 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT Sbjct 721 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT 780 Query 781 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV 840 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV Sbjct 781 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV 840 Query 841 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS 879 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS Sbjct 841 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS 879 >RecName: Full=Non-structural replication polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus (isolate TYMC)] Sequence ID: P28477.1 Length: 1844 Range 1: 1 to 879 Score:1746 bits(4521), Expect:0.0, Method:Compositional matrix adjust., Identities:875/879(99%), Positives:876/879(99%), Gaps:0/879(0%) Query 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL Sbjct 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 Query 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP Sbjct 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 Query 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD Sbjct 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 Query 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG Sbjct 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 Query 241 PVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 PVHSLLIQRGTPPPDPSLQAPPTLM SDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP Sbjct 241 PVHSLLIQRGTPPPDPSLQAPPTLMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 Query 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN Sbjct 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 Query 361 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI 420 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI Sbjct 361 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI 420 Query 421 TAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKLPHALQKAALLLLRP 480 TAFRRELYRKKEPHHPLDVFHLQHR+RNYHSAISAVRPASPPHQKLPHALQKAALLLLRP Sbjct 421 TAFRRELYRKKEPHHPLDVFHLQHRIRNYHSAISAVRPASPPHQKLPHALQKAALLLLRP 480 Query 481 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL 540 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL Sbjct 481 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL 540 Query 541 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF 600 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF Sbjct 541 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF 600 Query 601 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQNSDLALESSTSTEPPPPPIRSPDMTP 660 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQR HQNSDLALESSTSTEPPPPPIRSPDMTP Sbjct 601 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQRAHQNSDLALESSTSTEPPPPPIRSPDMTP 660 Query 661 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPA 720 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDS DPLMGSHLLHHSLPA Sbjct 661 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSVDPLMGSHLLHHSLPA 720 Query 721 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT 780 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT Sbjct 721 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT 780 Query 781 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV 840 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV Sbjct 781 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV 840 Query 841 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS 879 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS Sbjct 841 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS 879 >RecName: Full=Non-structural replication polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus (Australian isolate)] Sequence ID: P20128.1 Length: 1844 Range 1: 1 to 879 Score:1573 bits(4072), Expect:0.0, Method:Compositional matrix adjust., Identities:834/879(95%), Positives:848/879(96%), Gaps:0/879(0%) Query 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL Sbjct 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 Query 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP Sbjct 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 Query 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFL+KPNLERLYASLVVPPEAHLSD Sbjct 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNLERLYASLVVPPEAHLSD 180 Query 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 QSF+PKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG Sbjct 181 QSFFPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 Query 241 PVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 PVHSLLIQRGTPPPDPSLQAP T M SDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP Sbjct 241 PVHSLLIQRGTPPPDPSLQAPSTPMASDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 Query 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN Sbjct 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 Query 361 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI 420 VPLRPNVVYHVLQSPIASL+LYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI Sbjct 361 VPLRPNVVYHVLQSPIASLALYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVKSI 420 Query 421 TAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASPPHQKLPHALQKAALLLLRP 480 TAFRRELYRKK PHHPLDVFHLQ +RN+HSAISAVRPASPPHQ+LPHALQKAALLLLRP Sbjct 421 TAFRRELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRPASPPHQRLPHALQKAALLLLRP 480 Query 481 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHKLFSPPTL 540 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLL+LSESS+LLHKLFSPPTL Sbjct 481 ISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLSLSESSVLLHKLFSPPTL 540 Query 541 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLPPAFASTF 600 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPD SEASLPPAFAST Sbjct 541 QAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDHSEASLPPAFASTS 600 Query 601 VPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQNSDLALESSTSTEPPPPPIRSPDMTP 660 VPRPPP ASS GAQPPTTTAAPPTPIEPTQR HQNSDL LESST EPPPPPI+S D+ P Sbjct 601 VPRPPPVASSLGAQPPTTTAAPPTPIEPTQRAHQNSDLTLESSTPIEPPPPPIQSSDIPP 660 Query 661 SAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPA 720 SAPVLFPEINSP RF P+LP TPD EP T PP S HQD TD ADPLMGSHLLHHSLPA Sbjct 661 SAPVLFPEINSPHRFSPKLPTTPDFEPTRTSPPPSTSHQDSTDPADPLMGSHLLHHSLPA 720 Query 721 PPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT 780 PPTHPL SSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT Sbjct 721 PPTHPLQSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT 780 Query 781 LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATV 840 LNCLLSAVSDQTKVSE+HLWESLQTILPDSQL NEE N+LGLSTEHLTALAHLYNFQAT+ Sbjct 781 LNCLLSAVSDQTKVSEDHLWESLQTILPDSQLRNEEINSLGLSTEHLTALAHLYNFQATI 840 Query 841 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS 879 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS Sbjct 841 YSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS 879 >RecName: Full=Non-structural replication polyprotein; Contains: RecName: Full=Methyltransferase/Protease; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=POL [Ononis yellow mosaic virus] Sequence ID: P20127.1 Length: 1776 Range 1: 1 to 804 Score:573 bits(1476), Expect:0.0, Method:Compositional matrix adjust., Identities:369/885(42%), Positives:487/885(55%), Gaps:90/885(10%) Query 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 MAF+LAL+ALA +TH+D SL+P+L S V +++S+Q +PW I KE LP L + GIPTSG Sbjct 1 MAFELALNALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKEHLPFLLAAGIPTSGF 60 Query 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 G + HPHA HK IETFLL HWSF AT +SVMFMKPSKF KLA VN NF EL NYRL Sbjct 61 GCNPHPHAVHKVIETFLLFNHWSFMATVQASVMFMKPSKFKKLASVNPNFSELVNYRLTA 120 Query 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 DS RYP TS LP + +FMHDALMY++PSQI+DLF++ P+L+RL+ SLVVPPE+ +D Sbjct 121 ADSVRYPSTSTSLPKYEIVFMHDALMYFNPSQILDLFIQCPSLQRLHCSLVVPPESSFTD 180 Query 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 S +P LYTYT + +TLHYVPEGH AGSY+QP DA SWL++NSI + +LSV+ LESWG Sbjct 181 LSLHPNLYTYTISGNTLHYVPEGHHAGSYDQPLDAISWLKLNSIHSPHLNLSVSKLESWG 240 Query 241 PVHSLLIQRGTP--PPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQ 298 PVHSLLI RG P P Q VSF IP+ + LP+ATFL Sbjct 241 PVHSLLITRGLPHLPSSEKQQ---------------------VSFHIPNCLPLPEATFLH 279 Query 299 QPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFAL 358 QPLR RLVP VY+ALFTYTRAVRTLRTSDPA FVR HS+KP + WVTS AWDNLQT+AL Sbjct 280 QPLRHRLVPTEVYDALFTYTRAVRTLRTSDPAGFVRTHSNKPQYSWVTSRAWDNLQTYAL 339 Query 359 LNVPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLLQRFLPLPIPLAEVK 418 LN P+RP V++ SP+ L++ QH L A+P L + L + L P + Sbjct 340 LNAPVRPVVLFDFFLSPLKKFQLFMSQHINSLVIKALPFLGLIPPLVKLTTLGFP---IP 396 Query 419 SITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAIS-----AVRPASPPHQKLPHALQKA 473 S++ F+ + P F L+ H AIS + P PP P A Q Sbjct 397 SVSHFQILFFTMIGPS---GQFILEAFPSMLHPAISYLESCGLVPRLPP----PVAQQLQ 449 Query 474 ALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQASLVLLALSESSILLHK 533 + +LR S T + + W W+ + ++ AL + + K Sbjct 450 TMGILRKRSAFSLKTSL-----------STVKWP------SWKITALISALPAALSVFLK 492 Query 534 LFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPFTPTTSTAPPDRSEASLP 593 SP +LQ+ HD Y+ HLHP ++L W + + FLP + T PP SE + Sbjct 493 TISPLSLQSLHDGYNAHLHPSPFNLSWSLETFHVQSPSPFLPLSLT----PPSPSE-EIA 547 Query 594 PAFASTFVPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTHQNSDLALESSTSTEPPP--P 651 VP P PA +P P P ++ L+ +++S +P P Sbjct 548 LPPPIFRVPPPLPAQETPSPPAPALVPPTQPPQPQPWEEIISTFLSSLNASSHKPSPSSA 607 Query 652 PIRSPDMTPSAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMGS 711 P+ SP P + + E +R + A L P P+ P Q+ T+ Sbjct 608 PLESPSPIPESFEVLAEAPQHQRSINECGALNQL-----PLPVPSPLQNSTN-------- 654 Query 712 HLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSL 771 P P PSS LL +D + GPV+ FE + P Y + +F TRLR Sbjct 655 ----------PKPPFPSSDLL-----SDMSCTGPVVEFETIFPAEYHMSNGSFPTRLRGH 699 Query 772 PSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALA 831 P + P P +CLL+AV+ Q +E LWE L +LPDS L+N E GLST+HLT L+ Sbjct 700 PRSSAPFPQKHCLLTAVASQLSYTEHQLWEFLCDMLPDSLLTNSEVENFGLSTDHLTCLS 759 Query 832 HLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRL 876 + +F+ +++ I +G I I++ GPP HF +L Sbjct 760 YRLHFECIIHTSHSTIPYGIKKASTVIQISYIDGPPKHFKAFIKL 804 >RecName: Full=Non-structural replication polyprotein; Contains: RecName: Full=Methyltransferase/Protease; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=POL [Eggplant mosaic virus] Sequence ID: P20126.2 Length: 1839 Range 1: 1 to 872 Score:572 bits(1474), Expect:0.0, Method:Compositional matrix adjust., Identities:402/912(44%), Positives:504/912(55%), Gaps:73/912(8%) Query 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 MAFQ AL+AL TTHRD S +PIL S V+ +R S+ YPW +PKE +P L S+GIP SGL Sbjct 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPWLLPKEAVPHLLSWGIPNSGL 60 Query 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 G + HPH HKT+ETFLL HW A PS+VMFMKPSKF KLA +N F+EL N+RL Sbjct 61 GVTPHPHPIHKTVETFLLFNHWHALARLPSTVMFMKPSKFQKLAALNPKFQELINFRLTA 120 Query 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 D+TRYP TS P FMHDALMY+ P+QI+DLF + P LE LY SL+VPPE+H +D Sbjct 121 ADTTRYPSTSLTFPSNSICFMHDALMYFSPAQIVDLFTQSPALETLYCSLIVPPESHFTD 180 Query 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 S +P++YTY + TLHY+PE H +GSYNQP A SWL+I+SI + LSVT LESWG Sbjct 181 LSLFPEIYTYKISGQTLHYIPENHHSGSYNQPLQAPSWLKISSILSPSLALSVTKLESWG 240 Query 241 PVHSLLIQRGTPPPDPSLQA-PPTL------------------MTSDLFRSYQEPRLDVV 281 PVHS+LIQRG PP PSL A PP L TS LF Q+P+L +V Sbjct 241 PVHSILIQRGL-PPKPSLSARPPVLPNQPPRATTPNSQNQLLHQTSQLFFQLQQPQLSLV 299 Query 282 SFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPD 341 SFRIPD +ELPQATFL+QPLR RLVP +VYNALFTYTRAVRTLRTSDPA FVR S+KP+ Sbjct 300 SFRIPDCVELPQATFLRQPLRHRLVPTSVYNALFTYTRAVRTLRTSDPAGFVRTQSNKPE 359 Query 342 HDWVTSNAWDNLQTFALLNVPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFL 401 H WVT NAWDNLQT + +N P RP V YH SP+A L L+ QHWR P L+ Sbjct 360 HAWVTPNAWDNLQTLS-VNAPHRPQVCYHFFSSPVARLKLHFAQHWRAYLLALTPFLTTS 418 Query 402 TLLQRFLPLPIPLAEVKSITAFRRELYRKKEPHHPLDVFHLQHRVRNYHSAISAVRPASP 461 LL P + ++ FRR + + H L S +R A+ Sbjct 419 PLLLPLFNFNTPFPLPRLLSLFRRSVSSPRLLHSILP---------------SQLRGAAI 463 Query 462 PHQKLP-------HALQKAALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALP 514 P++ LP H L +LL PI P + R S++P ++ Sbjct 464 PNRPLPLWVTKLHHFLDSHSLLPTPPIRPRIELQ---RLPLMSLIPKPKIV--------- 511 Query 515 WQASLVLLALSESSILLHKLFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFL 574 L+ L LS +I +H F T Q HD YH HLHP + L W + + +FL Sbjct 512 --LPLLSLLLSSPTIYIH-FFQAQTPQQLHDNYHLHLHPSRFELSWTLQSYHVTQAQSFL 568 Query 575 PFTPTTSTAPPDRSEASLPPAFASTFVPRPPPAASSPGAQPPTTT---AAPPTPIEPTQR 631 P T + A PPAF + +P P +SSP Q PT + PP EP+ Sbjct 569 PLLLPAPTQAQASNPAPRPPAFHAIPLPPQPSTSSSPPLQEPTLSPHLIHPPLTREPSPL 628 Query 632 THQNSDLAL----ESSTSTEPPPPPIRSPDMTPSAPVLFPEINSPRRFPPQLPATPDLEP 687 D AL + TS E P P +P Q+P +L P Sbjct 629 NGCACDSALLPSTAAMTSAEHPTPLNPPTPSPTPDVPPPDSPGNPSLL-KQVPPEANLHP 687 Query 688 AHTPPPLSIPHQDPTDSADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVL 747 H P P+ + P L+ P+ +P P S PL +DPTA+GP L Sbjct 688 IHNP-------DLPSSTTLPSGALTLVPAKTPSIYANPTPPSSHPFTPLADDPTAVGPCL 740 Query 748 PFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTIL 807 PF LHP Y +A FLTR R +P + L P LNCLL+ S+ + SE LW SLQ+IL Sbjct 741 PFHVLHPADYFPLSAEFLTRTRHVPPSSLSHPKLNCLLTCFSELSGHSESDLWLSLQSIL 800 Query 808 PDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPP 867 PDSQL N E +TLGLST+ LTAL +Y+ T+++ G +G + + I + GPP Sbjct 801 PDSQLQNPEVSTLGLSTDILTALCFIYHSSVTLHAPSGVYHYGIASSSTVYVIHYQPGPP 860 Query 868 SHFSPGKRLLGS 879 HFS RL S Sbjct 861 PHFSLSPRLAAS 872 >RecName: Full=Non-structural replication polyprotein; Contains: RecName: Full=Methyltransferase/Protease; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=POL [Erysimum latent virus] Sequence ID: P35928.1 Length: 1748 Range 1: 1 to 384 Score:387 bits(993), Expect:3e-114, Method:Compositional matrix adjust., Identities:208/400(52%), Positives:269/400(67%), Gaps:16/400(4%) Query 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60 MAFQLALDAL+ TTHRD P+L+S+V ++SS++ +P+++PKEL+P LN GI SGL Sbjct 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLNRMGIQVSGL 60 Query 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120 ++ HPHAAHKT+E LL HW+ S+V+FMKPSKF KL + NS+F+ L NYRLHP Sbjct 61 TSTPHPHAAHKTLELNLLFNHWAKSCNVDSAVVFMKPSKFFKLQEKNSHFKSLHNYRLHP 120 Query 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180 +DS RYP S LP ++HD+LMY+ P QI LF PNL LYASLVVPPE+ ++D Sbjct 121 HDSNRYPHPSTSLPTEKRFYIHDSLMYFTPHQISGLFESCPNLLSLYASLVVPPESSMTD 180 Query 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWG 240 S P LY Y+ + TLHY PEGH AGSYNQP +A WL+I++I+ + LSV++LESWG Sbjct 181 LSLNPDLYRYSIHKSTLHYTPEGHSAGSYNQPVNALDWLKISAIQTPSLSLSVSVLESWG 240 Query 241 PVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQP 300 P+HSLLI+R + +P Q D++SF+ P A+ LP L P Sbjct 241 PLHSLLIERSSQTQNPDSQKIK----------------DLISFQTPQALILPNPDSLAVP 284 Query 301 LRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLN 360 LR RLVP+ Y+ALFTYTRA RTLRTSDPA FVR S+KP+ +WVTS AWDNLQT+ALL Sbjct 285 LRHRLVPQKTYDALFTYTRATRTLRTSDPAGFVRTQSNKPEFNWVTSQAWDNLQTYALLT 344 Query 361 VPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSF 400 RP V Y + +SP+ L L ++ +L A A P L+ Sbjct 345 ASYRPPVSYTLHRSPLTKLKELLTRNALKLAAMASPALTL 384 Range 2: 615 to 768 Score:101 bits(252), Expect:1e-20, Method:Compositional matrix adjust., Identities:59/154(38%), Positives:88/154(57%), Gaps:2/154(1%) Query 720 APPTHP--LPSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLP 777 +PP+ P P + LLPAPL D + GP+ F++L P Y +TA F R + P Sbjct 615 SPPSIPQTAPVTSLLPAPLETDDSCAGPISTFQDLFPASYYPHTANFPCRSKIPGYLEAP 674 Query 778 QPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQ 837 P L+C+L A+S Q S + LW +L T++P S L++ LGL TE LTAL++ Y+FQ Sbjct 675 YPPLDCMLVALSAQMPQSPQELWSALNTLMPLSALTSPSLRVLGLGTEELTALSYYYHFQ 734 Query 838 ATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFS 871 A ++SD FG ++ + +GPP+HF+ Sbjct 735 AEIHSDNEIYRFGIQTASTKLCLIRDSGPPAHFT 768 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=POL; Contains: RecName: Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat protein [Maize rayado fino virus isolate Costa Rica] Sequence ID: Q91TW9.2 Length: 2028 Range 1: 13 to 402 Score:369 bits(946), Expect:1e-107, Method:Compositional matrix adjust., Identities:201/410(49%), Positives:249/410(60%), Gaps:25/410(6%) Query 6 ALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHH 65 +++L PTTHRD PI+ES +R S++ YPWSIPKE L++ G+ SG G + H Sbjct 13 GVESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAH 72 Query 66 PHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTR 125 PH HKTIET LL W A PS VMF+KP KF KL NF L NYRL P D+TR Sbjct 73 PHPVHKTIETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINYRLVPKDTTR 132 Query 126 YPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYP 185 YP TS +LP T+FMHDALMYY P QI DLF P L+++YAS+VVP E+ + S +P Sbjct 133 YPSTSTNLPDCETVFMHDALMYYTPGQIADLFFLCPQLQKIYASVVVPAESSFTHLSLHP 192 Query 186 KLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSL 245 +LY + L Y PEG+ A +Y QP A WL+ +G+ SVT+L+S+GPVHSL Sbjct 193 ELYRFRFQGSDLVYEPEGNPAANYTQPRSALDWLQTTGFTVGHEFFSVTLLDSFGPVHSL 252 Query 246 LIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRL 305 LIQRG PP +F++ D+ SFR+PDA+ LP L Q LR RL Sbjct 253 LIQRGRPP---------------VFQAE-----DIASFRVPDAVALPAPASLHQDLRHRL 292 Query 306 VPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDNLQTFALLNVPLRP 365 VPR VY+ALF Y RAVRTLR +DPA FVR KP++ WVTS+AWDNLQ FAL +RP Sbjct 293 VPRKVYDALFNYVRAVRTLRVTDPAGFVRTQVGKPEYSWVTSSAWDNLQHFALQTAAVRP 352 Query 366 NVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSF-----LTLLQRFLPL 410 N + + QSP A LS +LR H L A P S + L R LPL Sbjct 353 NTSHPLFQSPFARLSHWLRTHTWALWCLASPSASVSAWATASALGRLLPL 402 Range 2: 673 to 807 Score:97.8 bits(242), Expect:2e-19, Method:Compositional matrix adjust., Identities:57/138(41%), Positives:73/138(52%), Gaps:4/138(2%) Query 734 APLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPT-LNCLLSAVSDQT 792 A L DP+A GPV+ F EL Y E T FLTR R+ S+ +P PT CLL AVS T Sbjct 673 ARLDADPSASGPVMEFRELQKGAYIEPTGAFLTRARNSVSSSIPYPTRAACLLVAVSQAT 732 Query 793 KVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPS 852 + LW +L LPDS L + TLGL+T+H LA +++ + S+ G + G Sbjct 733 GLPTRTLWAALCANLPDSVLDDGSLATLGLTTDHFAVLARIFSLRCRFVSEHGDVELGLH 792 Query 853 DTIKRIDITHTTGPPSHF 870 D R I HT P HF Sbjct 793 DATSRFTIRHT---PGHF 807 >RecName: Full=Non-structural replication polyprotein; Contains: RecName: Full=Methyltransferase/Protease; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=POL [Grapevine fleck virus isolate MT48] Sequence ID: Q8UZB6.1 Length: 1949 Range 1: 115 to 499 Score:310 bits(795), Expect:6e-88, Method:Compositional matrix adjust., Identities:192/412(47%), Positives:238/412(57%), Gaps:36/412(8%) Query 2 AFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLG 61 AFQ A+D L T +D I+ + S+ SS+ YP+++P LN GIP + G Sbjct 115 AFQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSALNQAGIPATSYG 174 Query 62 TSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVN-------SNFRELK 114 HPH HKTIET LL HW+ +AT PS+VMFMK SKF+KL N SNF L Sbjct 175 HQSHPHPIHKTIETHLLHEHWANRATLPSTVMFMKRSKFDKLRVSNAALVKSASNFLHLL 234 Query 115 NYRLHPNDSTRYP-FTSPD-LPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVV 172 N L D+ RY PD LP P FMH +LMY+ PSQI LFL P LERLYASLV+ Sbjct 235 NPILTARDADRYTHLPLPDTLPSTPLYFMHHSLMYFSPSQIAGLFLAAPFLERLYASLVL 294 Query 173 PPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLS 232 P E+ + F+P LY Y TT LHYV EG+ + SY QP A WL +SI G+ HL+ Sbjct 295 PAESTIGSHPFFPSLYRYRTTGEHLHYVLEGNPSSSYTQPLTATQWLTTSSITAGDLHLT 354 Query 233 VTILESWGPVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELP 292 VT+LESW VHS+LI RG R + PR D++S PDA+ LP Sbjct 355 VTVLESWFSVHSILITRGV-------------------RPLELPR-DIISLPSPDAVLLP 394 Query 293 QATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVTSNAWDN 352 + PLR RLVPR V +LF Y RAVRTLRT+DPA F+R S+K + DWVT+ AWD+ Sbjct 395 NPSAFDIPLRSRLVPRDVCESLFVYVRAVRTLRTTDPAGFIRTQSNKAEFDWVTAEAWDH 454 Query 353 LQTFALLNVPLRPNVVYHVLQSPIASLSLYLRQHWRRLTATAVPILSFLTLL 404 L FALL P+RPN + L SP+A + +HW L PI + LTLL Sbjct 455 LAQFALLTAPVRPNTYFLPLLSPLAVV-----RHW--LFRKQRPIFATLTLL 499 Range 2: 742 to 890 Score:70.5 bits(171), Expect:6e-11, Method:Compositional matrix adjust., Identities:55/154(36%), Positives:81/154(52%), Gaps:13/154(8%) Query 718 LPAPPTHP---LPSSQLLP---APLTNDPTAI--GPVLPFEELHPRRYPENTATFLTRLR 769 +PAP T P PS L+ AP+T P+ + P PF EL+P Y +++ +F + + Sbjct 742 IPAPKTAPPLTFPSPTLVAEPDAPVTARPSPLPLAPSRPFSELYPGHYADHSGSFFLQ-Q 800 Query 770 SLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTLGLSTEHLTA 829 L ++ +P P L+CLL + S + + +E LW +L I P S L ++ LGLST HLTA Sbjct 801 PLVASSVPYPALDCLLVSCSAASGIPKEDLWATLCHIFPPSDLVSD----LGLSTNHLTA 856 Query 830 LAHLYNFQATVYSDRGPILFGPSDTIKRIDITHT 863 LA Y + T+ S G +ITHT Sbjct 857 LAFTYQWLVTLRSGELVQRHGLLSAPFAFEITHT 890 >RecName: Full=Non-structural replication polyprotein; Contains: RecName: Full=Methyltransferase/Protease; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=POL [Kennedya yellow mosaic virus (strain Jervis Bay)] Sequence ID: P36304.1 Length: 1874 Range 1: 738 to 906 Score:154 bits(389), Expect:8e-37, Method:Compositional matrix adjust., Identities:86/183(47%), Positives:115/183(62%), Gaps:14/183(7%) Query 697 PHQDPTDSADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELHPRR 756 P QDPT++ L+ P PPT + +PL DPT +GP + F L+PR Sbjct 738 PPQDPTNTTLSLLPE-------PKPPTE-------VQSPLMADPTCVGPAVSFSSLYPRD 783 Query 757 YPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEE 816 + NTA+FLTRLR P LP P NCLL+AV+ ++ LW SLQ +LPDS LSN E Sbjct 784 FFPNTASFLTRLRLSPPTPLPMPKNNCLLTAVAPSLHINPHRLWTSLQEVLPDSLLSNSE 843 Query 817 TNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRL 876 +++G+ST+ LTAL+HL+NFQA V+S+RG ILFG I I HT GPP+H+SP ++ Sbjct 844 IDSVGMSTDLLTALSHLFNFQAVVHSERGDILFGLQSAKTVIHIYHTNGPPAHYSPPPKI 903 Query 877 LGS 879 +GS Sbjct 904 IGS 906 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Botrytis virus F NZL/Howitt] Sequence ID: Q9DRA1.1 Length: 1896 Range 1: 5 to 331 Score:108 bits(269), Expect:1e-22, Method:Compositional matrix adjust., Identities:97/351(28%), Positives:146/351(41%), Gaps:31/351(8%) Query 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTY-PWSIPKELLPLLNSYGIPTSGLG 61 + A ++ + H+D + P + + R+ Q Y P+++ K LL GI T Sbjct 5 LERAFASVTQSFHKDATQGPTTNEYLVA-RAETQRYAPYAVRKGPAALLAQVGINTIHDS 63 Query 62 TSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKL-AQVNSNFREL--KNYRL 118 H H A + F + V K + F KL AQ++S L +NY + Sbjct 64 PLSHSHPACYALNAFHFLKVIPRYLHGKAEVWGTKDNWFRKLQAQIDSQTTTLTHRNYAI 123 Query 119 HPNDSTRYPFTSPDLP---VFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPE 175 D RYP T D P T+FMHDAL Y P + LF P + L A+ V+PPE Sbjct 124 TARDHVRYPGTVVDHPGSCTAGTLFMHDALQYMTPLDVYTLFATSPEMHSLVATAVIPPE 183 Query 176 AHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTI 235 + +F+P+LY L Y P+G+ A +YNQP AH W+ + S+ + LSV + Sbjct 184 SVDRLPAFWPELYQLAYYEDHLCYAPDGNFADAYNQPLAAHQWMTMKSLHGPDFTLSVDV 243 Query 236 LESWGPVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQAT 295 S H +I + PD F PD +ELP+ Sbjct 244 PASRYSHHIFVISKRPGLPDTHRD-----------------------FMCPDLVELPKDF 280 Query 296 FLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHDWVT 346 F D+L+PR + N + Y +V+ D + R + + VT Sbjct 281 FPGANKADKLLPRTLVNQMVEYAASVKRATIKDATSRTRAYVKDQKYAAVT 331 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Sclerotinia sclerotiorum debilitation-associated virus CHN/Xie] Sequence ID: Q6YI57.2 Length: 1700 Range 1: 291 to 519 Score:106 bits(264), Expect:5e-22, Method:Compositional matrix adjust., Identities:75/231(32%), Positives:112/231(48%), Gaps:8/231(3%) Query 50 LNSYGIPTSGLGTSHHPHAAHKTIETFLL-CTHWSFQATTPSSVMFMKPSKFNKLAQVNS 108 L SYGI + H HAA K IE LL + + + ++++ K +K + + + S Sbjct 291 LESYGIGSDPYAVRSHTHAAEKAIENKLLDIVGMNLRRRSVITMLWQKRNKAHLMGR--S 348 Query 109 NFRELK-NYRLHPNDSTRYPFTSPDLPVFPT--IFMHDALMYYHPSQIMDLFLRKPNLER 165 N +++ N + D RY S LP T F+ DAL + P + DLF R PNL Sbjct 349 NCKDVYVNTIMEAKDLVRYDQFSFGLPSVATSTAFIGDALHHMTPESVFDLFERSPNLMV 408 Query 166 LYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIR 225 L+A++V+PPE L +S P+LY+ Y+PEGH GSY +WL I+ I+ Sbjct 409 LHATIVIPPETLLKCRSSNPELYSLRYYDDKFVYIPEGHAGGSYVHEVKNSNWLAISHIQ 468 Query 226 LGNHHLSVTILESWGPVHSLLIQRGTPPPDP--SLQAPPTLMTSDLFRSYQ 274 G L+V LE+ H +I +G D Q+P + D+F Q Sbjct 469 RGGKFLTVKRLETLAAHHYFVIVKGKVETDSIRVFQSPSQVELLDIFADRQ 519 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus X (strain CP)] Sequence ID: P22591.1 Length: 1456 Range 1: 51 to 344 Score:103 bits(258), Expect:3e-21, Method:Compositional matrix adjust., Identities:87/318(27%), Positives:140/318(44%), Gaps:48/318(15%) Query 50 LNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSN 109 L +GI T+ H HAA KTIE LL S P + MF+KP K N + N Sbjct 51 LEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSLLPQEPVTFMFLKPRKLN-FMRRNPR 109 Query 110 FREL-KNYRLHPNDSTRYPFTS-----PDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNL 163 +++ N + P D RYP + ++ T ++ D L + PS I++ F P L Sbjct 110 IKDIFHNVAIEPRDVARYPKETIIHKLAEIET-DTAYISDTLHFLDPSYIVETFQNCPKL 168 Query 164 ERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINS 223 + LYA+LV+P EA +S +P +Y+ Y+P H G+Y+ WL++ Sbjct 169 QTLYATLVLPSEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFTDLQWLKVGK 228 Query 224 IR--------LGN----------HHLSVTILESWGPVHSLLIQRGTPPPDPSLQAPPTLM 265 I+ LG+ H ++V + ES+ H I+RG +M Sbjct 229 IKWRDPKDGLLGHLNYTHEQVDTHTVTVQLQESFAANHLYCIRRG------------NMM 276 Query 266 TSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLR 325 T ++ R++ +P + +P I LP+ ++P+ + + + LF Y R V+ + Sbjct 277 TPEV-RTFGQPD----RYVLPPQIFLPKVHNCKKPILKKTMMQ-----LFLYVRTVKVAK 326 Query 326 TSDPAAFVRMHSSKPDHD 343 D A VR D D Sbjct 327 NCDIFAKVRQLIKSSDRD 344 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus X] Sequence ID: P09395.1 Length: 1456 Range 1: 40 to 344 Score:102 bits(255), Expect:6e-21, Method:Compositional matrix adjust., Identities:90/328(27%), Positives:142/328(43%), Gaps:46/328(14%) Query 39 PWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPS 98 P++ E L +GI T+ H HAA KTIE LL S P + MF+KP Sbjct 40 PYAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPR 99 Query 99 KFNKLAQVNSNFREL-KNYRLHPNDSTRYP----FTSPDLPVFPTIFMHDALMYYHPSQI 153 K N + + N +++ N + P D RYP T ++ D L + PS I Sbjct 100 KLNYMRR-NPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYIGDTLHFLDPSYI 158 Query 154 MDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPS 213 ++ F P L+ LYA+LV+P EA +S +P +Y+ Y+P H G+Y+ Sbjct 159 VETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEF 218 Query 214 DAHSWLRINSIR--------LGN----------HHLSVTILESWGPVHSLLIQRGTPPPD 255 WL++ I+ LG+ H ++V + ES+ H I+RG Sbjct 219 SHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRG----- 273 Query 256 PSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVPRAVYNALF 315 L+T ++ R++ +P + IP I LP+ ++P+ + + + LF Sbjct 274 -------DLLTPEV-RTFGQPD----RYVIPPQIFLPKVHNCKKPILKKTMMQ-----LF 316 Query 316 TYTRAVRTLRTSDPAAFVRMHSSKPDHD 343 Y R V+ + D A VR D D Sbjct 317 LYVRTVKVAKNCDIFAKVRQLIKSSDLD 344 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus X (strain X3)] Sequence ID: P17779.1 Length: 1456 Range 1: 40 to 344 Score:102 bits(254), Expect:9e-21, Method:Compositional matrix adjust., Identities:90/328(27%), Positives:142/328(43%), Gaps:46/328(14%) Query 39 PWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPS 98 P++ E L +GI T+ H HAA KTIE LL S P + MF+KP Sbjct 40 PYAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPR 99 Query 99 KFNKLAQVNSNFREL-KNYRLHPNDSTRYP----FTSPDLPVFPTIFMHDALMYYHPSQI 153 K N + + N +++ N + P D RYP T ++ D L + PS I Sbjct 100 KLNYMRR-NPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTETAYISDTLHFLDPSYI 158 Query 154 MDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPS 213 ++ F P L+ LYA+LV+P EA +S +P +Y+ Y+P H G+Y+ Sbjct 159 VETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEF 218 Query 214 DAHSWLRINSIR--------LGN----------HHLSVTILESWGPVHSLLIQRGTPPPD 255 WL++ I+ LG+ H ++V + ES+ H I+RG Sbjct 219 AHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRG----- 273 Query 256 PSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVPRAVYNALF 315 L+T ++ R++ +P + IP I LP+ ++P+ + + + LF Sbjct 274 -------DLLTPEV-RTFGQPD----RYVIPPQIFLPKVHNCKKPILKKTMMQ-----LF 316 Query 316 TYTRAVRTLRTSDPAAFVRMHSSKPDHD 343 Y R V+ + D A VR D D Sbjct 317 LYVRTVKVAKNCDIFAKVRQLIKSSDLD 344 >RecName: Full=RNA replication protein; AltName: Full=147 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [White clover mosaic virus (strain O)] Sequence ID: P15402.1 Length: 1294 Range 1: 13 to 255 Score:99.8 bits(247), Expect:5e-20, Method:Compositional matrix adjust., Identities:72/243(30%), Positives:105/243(43%), Gaps:9/243(3%) Query 17 DPSLHPILESTVDS-----IRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHK 71 DPS+ +L S +R S+ P++I + L YGI T+ H H A K Sbjct 13 DPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAPDAADTLEKYGIATNPFAVKVHSHGAVK 72 Query 72 TIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP---- 127 +IE LL P + +F+K SK L + SN N + P D RY Sbjct 73 SIENTLLERVGFNLPKEPCTFLFLKRSKLRYLRRGPSNNDIFINLAIEPRDLQRYEEDTL 132 Query 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187 S ++ D ++ + DLF P L+ LYA+LV+PPEA S P L Sbjct 133 VESWTRITTRYAYISDTFHFFTRKMLADLFFHNPALDVLYATLVLPPEALHKHPSIEPDL 192 Query 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247 YT + Y+P H GSY+ WL++ ++ L+ ++ES G H +I Sbjct 193 YTINYNFNGFQYIPGNHGGGSYSHEFKQLEWLKVGHLKSPELCLTFQMIESIGANHLFMI 252 Query 248 QRG 250 RG Sbjct 253 TRG 255 >RecName: Full=RNA replication protein; AltName: Full=147 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [White clover mosaic virus (strain M)] Sequence ID: P09498.1 Length: 1294 Range 1: 13 to 255 Score:99.0 bits(245), Expect:8e-20, Method:Compositional matrix adjust., Identities:73/243(30%), Positives:105/243(43%), Gaps:9/243(3%) Query 17 DPSLHPILESTVDS-----IRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHK 71 DPS+ +L S +R S+ P++I + L YGI T+ H H A K Sbjct 13 DPSVKAVLNEEAYSHIRPVLRESLTNNPYAIAPDAADTLEKYGIATNPFAVKVHSHGAVK 72 Query 72 TIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYP---- 127 +IE LL P +F+K SK L + SN N + P D RY Sbjct 73 SIENTLLERVGFNLPKEPCIFLFLKRSKLRYLRRGPSNKDIFINLAIEPRDLQRYEEDTL 132 Query 128 FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKL 187 S ++ D L ++ + DLF P L+ LYA+LV+PPEA S P L Sbjct 133 VESWTRITTRYAYISDTLHFFTRKMLADLFFHNPALDVLYATLVLPPEALHKHPSIEPDL 192 Query 188 YTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLI 247 YT + Y+P H GSY+ WL++ ++ L+ ++ES G H +I Sbjct 193 YTINYNFNGFQYIPGNHGGGSYSHEFKQLEWLKVGHLKSPELSLTFQMIESIGANHLFMI 252 Query 248 QRG 250 RG Sbjct 253 TRG 255 >RecName: Full=RNA replication protein; AltName: Full=156 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Plantago asiatica mosaic virus] Sequence ID: Q07518.1 Length: 1385 Range 1: 13 to 257 Score:99.0 bits(245), Expect:9e-20, Method:Compositional matrix adjust., Identities:76/248(31%), Positives:114/248(45%), Gaps:16/248(6%) Query 17 DPSLHPILESTV-----DSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHK 71 DPSL +++ + + T P++ E L + GI + + H HAA K Sbjct 13 DPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHPYAITSHTHAAAK 72 Query 72 TIETFL--LCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPFT 129 IE+ L + +H+ P S +FMKP+K + ++ N + P D RYP Sbjct 73 AIESDLYEVVSHY-LPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQE 131 Query 130 S-----PDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFY 184 + D+P FM D L + PS + LF P L+ LYA+LV+PPE S +S Y Sbjct 132 TIINRLADIPT-QIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSLY 189 Query 185 PKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRL-GNHHLSVTILESWGPVH 243 P++YT T + Y+P GH SY D WL + + G ++ LE+ G H Sbjct 190 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANH 249 Query 244 SLLIQRGT 251 + QRG Sbjct 250 LFIFQRGN 257 >RecName: Full=RNA replication protein; AltName: Full=152 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Foxtail mosaic virus] Sequence ID: P22168.1 Length: 1335 Range 1: 12 to 325 Score:97.8 bits(242), Expect:2e-19, Method:Compositional matrix adjust., Identities:88/337(26%), Positives:142/337(42%), Gaps:35/337(10%) Query 17 DPSLHPILESTV-----DSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHK 71 DPSL +++ D + + + P+SIP+ +L Y IP + HPHAA K Sbjct 12 DPSLRAVIQEEAHKQIKDLFKETTRCNPYSIPQAGRKVLEKYAIPYNPYSLKLHPHAASK 71 Query 72 TIETFLLCTHWSF---QATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPF 128 E L ++ ++TP + MF KP K + + + + N + P D RYP Sbjct 72 AFEVSLYEAASNYLPSTSSTPVTFMFTKPGKL-RFFRRRGHVDKFVNADIVPRDLARYPR 130 Query 129 TS--PDLPVFPTI--FMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFY 184 + LP T F+ D L ++ ++++F R P LE L A++V+PPEA +S + Sbjct 131 DTVYSYLPEITTTHAFIGDTLHHFGEDFLVEVFSRSPKLEVLLATMVLPPEAFYRMESLH 190 Query 185 PKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHS 244 P +YT Y+P G G Y +WL ++ G ++ +E+ H Sbjct 191 PSVYTLLYRDDRFLYLPGGLSGGEYEHRYKDLNWLTFGTVTHGGITITGERIETKAANHL 250 Query 245 LLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDR 304 L +RG L P FRS+ P V+ +P P +Q+P Sbjct 251 FLFRRG------RLATPK-------FRSFDMPEPMVL---LPKVFR-PAKYNVQKP---- 289 Query 305 LVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKPD 341 +PR N Y +++ D A +R + D Sbjct 290 -IPREKANKWLMYVKSIGNATIRDVWAKLRQTIANAD 325 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Botrytis virus X NZL/Howitt] Sequence ID: Q6YNQ7.1 Length: 1413 Range 1: 30 to 279 Score:97.1 bits(240), Expect:3e-19, Method:Compositional matrix adjust., Identities:76/252(30%), Positives:116/252(46%), Gaps:12/252(4%) Query 29 DSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQA-- 86 D I+S+ ++P+ + + LL G+ T+ T+ H HAA K +E L Sbjct 30 DGIKSTKLSFPYKVDESTAILLEKEGVLTNPFSTTLHTHAAEKMLENRTLNEVGKKLKVH 89 Query 87 TTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFPTI-----FM 141 T P + + K K + + ++ ++ NY D +R F + D V P + + Sbjct 90 TGPFTFIQFKTGKLGHVGRGHNQGDQIINYAREAKDLSR--FETLDTAVVPPVHNRVALL 147 Query 142 HDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTT-TRHTLHYV 200 HD L + P Q+ LF PNL LYA+LV+P EA + S P YT + Y+ Sbjct 148 HDTLHFLSPRQLAQLFHHNPNLHLLYATLVLPVEALHNLPSLNPHAYTLEYFSNGDFAYM 207 Query 201 PEGHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPS-LQ 259 P GH Y ++ WLR I+LG+ LS+ +S+G H + R PP P L Sbjct 208 PGGHAGSGYYHSAETLHWLRAGQIKLGHFSLSLNKEDSFGAHHIFTVTRQFIPPAPRYLY 267 Query 260 APPTLMT-SDLF 270 A L+T D+F Sbjct 268 AETELVTLHDIF 279 >RecName: Full=RNA replication protein; AltName: Full=165 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Potato virus x (strain HB)] Sequence ID: Q07630.1 Length: 1456 Range 1: 40 to 344 Score:95.9 bits(237), Expect:9e-19, Method:Compositional matrix adjust., Identities:86/334(26%), Positives:143/334(42%), Gaps:58/334(17%) Query 39 PWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPS 98 P++ E L +GI T+ H HAA KTIE LL S P + MF+KP Sbjct 40 PYAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSLLPQEPVTFMFLKPR 99 Query 99 KFNKLAQVNSNFREL-KNYRLHPNDSTRYPFTS-----PDLPVFPTIFMHDALMYYHPSQ 152 K N + N +++ N + P D RYP + ++ T ++ D L + PS Sbjct 100 KLN-FMRRNPRIKDIFHNVAIEPRDVARYPKETIIHKLAEIKT-DTAYISDTLHFLDPSY 157 Query 153 IMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQP 212 I++ F P L+ LYA+LV+P EA +S +P +Y+ Y+P H G+Y+ Sbjct 158 IVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYH-- 215 Query 213 SDAHSWLRINSIRLGN-----------------------HHLSVTILESWGPVHSLLIQR 249 H + + S+++G H ++V + ES+ H I+R Sbjct 216 ---HEFSHLQSVKVGKIKWRDPKDGLLGHLNYTHEQVDTHTVTVQLQESFAANHLYCIRR 272 Query 250 GTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAIELPQATFLQQPLRDRLVPRA 309 G +MT ++ R++ +P + +P I LP+ ++P+ + + + Sbjct 273 G------------NMMTPEV-RTFGQPD----RYVLPPQIFLPKVHNCKKPILKKTMMQ- 314 Query 310 VYNALFTYTRAVRTLRTSDPAAFVRMHSSKPDHD 343 LF Y R V+ + D A +R D D Sbjct 315 ----LFLYVRTVKVAKNCDIFAKIRQLIKSSDLD 344 >RecName: Full=RNA replication protein; AltName: Full=186 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Narcissus mosaic virus] Sequence ID: P15095.1 Length: 1643 Range 1: 12 to 262 Score:90.1 bits(222), Expect:5e-17, Method:Compositional matrix adjust., Identities:66/252(26%), Positives:106/252(42%), Gaps:18/252(7%) Query 16 RDPSLHPILESTVDS-----IRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAH 70 RDPS+ L + ++ S+ P+++ + L S+GI + H HAA Sbjct 12 RDPSVQTALSEAAYTHVRPVLKESLVNCPYALSNDEADCLESFGITVNPYANQTHTHAAC 71 Query 71 KTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPFTS 130 K IE +L +++F+K SK + + N + P D RY + Sbjct 72 KVIENRMLEIVGMHLPKHSCTMLFLKRSKLRYMRRAAILKDVFLNKDVEPKDLFRYDRDT 131 Query 131 -----PDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYP 185 D+ +M D L + +I+ LF P LE L A++V+P EA S YP Sbjct 132 IRSRLQDIDT-KIAYMSDTLHFMSRREIVQLFEDSPKLETLLATVVLPVEALHKRTSLYP 190 Query 186 KLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGNHH-------LSVTILES 238 LY+ + Y+P H GSY P WL++ I + H L+ ++ES Sbjct 191 SLYSINYSAKGFEYIPGNHGGGSYFHPYTTLEWLKVRMINAEDFHKLSTGFILTFQLVES 250 Query 239 WGPVHSLLIQRG 250 G H ++Q+ Sbjct 251 LGANHLFIVQKA 262 >RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Lolium latent virus USA/US1] Sequence ID: B1PS76.1 Length: 1729 Range 1: 31 to 249 Score:88.2 bits(217), Expect:2e-16, Method:Compositional matrix adjust., Identities:70/219(32%), Positives:96/219(43%), Gaps:13/219(5%) Query 30 SIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQ-ATT 88 +++ + P++IP +L GI T + + HPHA K IE +L T Sbjct 31 DLKAVVNVNPYAIPTSAALVLEKLGIGTHPMSLAVHPHAPCKAIENQILNTVGHLLPKEQ 90 Query 89 PSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPF----------TSPDLPV-FP 137 P + M MK SK N L + S N HP D+ RY T+ L V Sbjct 91 PVTFMAMKKSKLNMLRRHPSRADTFINPIYHPRDNVRYGLDPDPDQDASITASFLEVKTS 150 Query 138 TIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTL 197 T FM D L Y P ++D+F P LE L AS V+P EA + +S YP LY+ T Sbjct 151 TAFMQDTLHYLTPEDLLDIFETSPKLENLIASFVLPVEATRNMKSLYPDLYSIHYTHGGF 210 Query 198 HYVPEGHEAGSYNQPSDAHSWLRINSI-RLGNHHLSVTI 235 + P GH +Y WLR S+ RL + T+ Sbjct 211 QWAPSGHLGDAYFHEPWQLYWLRCGSLTRLIEEETTTTV 249 >RecName: Full=RNA replication protein; AltName: Full=176 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Papaya mosaic virus] Sequence ID: P20951.1 Length: 1547 Range 1: 13 to 263 Score:87.4 bits(215), Expect:4e-16, Method:Compositional matrix adjust., Identities:73/251(29%), Positives:109/251(43%), Gaps:17/251(6%) Query 17 DPSLHPIL-ESTVDSIRSSIQ---TY-PWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHK 71 D SL ++ E I+ +I+ TY P++ P + L GI T+ H HAA K Sbjct 13 DVSLRAVIQEEAYRDIKLTIKETKTYNPYAHPVAVADSLEKLGIETNPFAVKAHTHAAAK 72 Query 72 TIETFLL-CTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPF-T 129 TIE + + P++ MFMK SK + N + P D RY T Sbjct 73 TIELDMYKIVSFYLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDT 132 Query 130 SPDLPVFPTI-----FMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFY 184 D V P I FM D L + + I +F P L+ LYA++V+PPEA S + Sbjct 133 LFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLH 192 Query 185 PKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRLGN-----HHLSVTILESW 239 P +Y + Y P GH +Y + W+++ + + H ++ ILE+ Sbjct 193 PGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETK 252 Query 240 GPVHSLLIQRG 250 G H + QRG Sbjct 253 GANHLFIFQRG 263 >RecName: Full=RNA replication protein; AltName: Full=194 kDa protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Shallot virus X] Sequence ID: Q04575.1 Length: 1718 Range 1: 33 to 272 Score:85.1 bits(209), Expect:2e-15, Method:Compositional matrix adjust., Identities:73/248(29%), Positives:110/248(44%), Gaps:32/248(12%) Query 32 RSSIQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSF----QAT 87 + ++ P+S+ L +GI TS T+ H HAA K IE L + +A Sbjct 33 KKAMAIAPFSVTTPEALTLERFGITTSPFATTSHTHAADKIIENDCLTIIGHYLPKREAV 92 Query 88 TPSSVMFMKPSKFNKLAQ--VNSNFRELKNYRLHPNDSTRYPFTSPD-LPVFPTIF--MH 142 T ++ +K SK + L + NF +NY P D RY T P+ PV T + + Sbjct 93 T---LIQLKRSKIHLLGRQPSQDNF---QNYCHEPKDVLRYGITHPNSCPVVNTEYAVLA 146 Query 143 DALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTRHTLHYVPE 202 D L + P Q+ LF R P LERL+A+LV+P EA S +P +Y + Y+P Sbjct 147 DTLHFMSPRQLYHLFSRNPKLERLFATLVLPIEAQHRLPSLFPDVYRLEYYKDHFAYMPG 206 Query 203 GHEAGSYNQPSDAHSWLRINSIRLG---------------NHHLSVTILESWGPVHSLLI 247 GH G+Y WL ++ ++G +LS+ +E+ H + I Sbjct 207 GHGGGAYVHSYGTLKWL--DTAQVGPVDYTKSSITNPWPITDYLSIEKIETKAAHHIMFI 264 Query 248 QRGTPPPD 255 QR D Sbjct 265 QRTRAQVD 272 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Indian citrus ringspot virus K1] Sequence ID: Q918W3.1 Length: 1658 Range 1: 7 to 323 Score:77.0 bits(188), Expect:6e-13, Method:Compositional matrix adjust., Identities:86/345(25%), Positives:138/345(40%), Gaps:44/345(12%) Query 6 ALDALAPTTHRDPSLHPILESTVDSIRSSIQTYP----WSIPKELLPLLNSYGIPTSGLG 61 A+D + TT R + E IR+ ++ ++IP + L GI T+ Sbjct 7 AIDRITDTTVRTT----LQEEACRQIRTELKNVEHVNRYAIPPDAADALEHLGIGTNPFS 62 Query 62 TSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPN 121 H H A K IE LL + +++F+K +K N + + N + P Sbjct 63 VKLHTHGACKAIENQLLYVVGTLLPKERVTMLFLKKAKLNFMKRCPKFQDIFLNQHIEPR 122 Query 122 DSTRYP-----FTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEA 176 D +RY TS +P T ++ D L + ++ LF+ PNL+ LYA++V+P EA Sbjct 123 DVSRYCDFNVQSTSTSIPTH-TAYISDTLHFMDRKDLVRLFINSPNLDTLYATIVLPVEA 181 Query 177 HLSDQSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRINSIRL---GNHHLSV 233 S YP LY Y+P GH G+Y+ WL + I N + + Sbjct 182 AYRQPSRYPDLYQINYDFDGFQYIPGGHGGGAYHHEFSHLEWLDVGHIHWRGPDNKDIQL 241 Query 234 TI----LESWGPVHSLLIQRGTPPPDPSLQAPPTLMTSDLFRSYQEPRLDVVSFRIPDAI 289 TI +ES G H +RG + + PR V +F + Sbjct 242 TITAQMIESLGANHLFCFRRG---------------------NLRTPR--VRTFGRDTQV 278 Query 290 ELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVR 334 LP+ +R +P + N + Y +++ T+ D A R Sbjct 279 LLPKIFRPVDKNFNRAIPLTLANKMLLYAKSINTVTFRDVVAKTR 323 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate APPLE)] Sequence ID: P54891.1 Length: 1885 Range 1: 40 to 259 Score:58.2 bits(139), Expect:3e-07, Method:Compositional matrix adjust., Identities:60/221(27%), Positives:100/221(45%), Gaps:11/221(4%) Query 35 IQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSV-- 92 ++ + + +P++ G+ S +H H KT+E LL + + S V Sbjct 40 VENFSFYLPEKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVAC 99 Query 93 MFMKPSKFNKLAQVNSN---FRELKNYRLHPNDSTRY-PFTSPD---LPVFPTIFMHDAL 145 + +K +K +K+ ++ SN ++ N + D RY P P+ P IF+HD + Sbjct 100 LSIKSNKMSKMERLGSNSVKTYDILNRLVTAKDKARYGPLARPERSPCPKKTNIFIHDEI 159 Query 146 MYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLS-DQSFYPKLYTYTTTRHTLHYVPEGH 204 Y+ Q ++ FL+ + L+A+LV PPE S P LY + L Y+P+G Sbjct 160 HYWSRDQ-LETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGV 218 Query 205 EAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSL 245 + SY QP + L +SI + N V I V+SL Sbjct 219 RSESYTQPLENGFLLSSSSILVRNKATGVEIRYQVSLVYSL 259 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate PLUM P863)] Sequence ID: P27738.1 Length: 1884 Range 1: 40 to 259 Score:57.0 bits(136), Expect:7e-07, Method:Compositional matrix adjust., Identities:60/223(27%), Positives:97/223(43%), Gaps:15/223(6%) Query 35 IQTYPWSIPKELLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLL-------CTHWSFQAT 87 ++ + + +P++ G+ S +H H KT+E LL + +S+ A Sbjct 40 VENFSFYLPEKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVAC 99 Query 88 TPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRY-PFTSPD---LPVFPTIFMHD 143 S+ K SK +L + ++ N + D RY P P+ P IF+HD Sbjct 100 L--SIKSNKMSKMERLGPNSVKTYDILNRLVTAKDKARYGPLAKPERSPCPKKTNIFIHD 157 Query 144 ALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLS-DQSFYPKLYTYTTTRHTLHYVPE 202 + Y+ Q ++ FL+ + L+A+LV PPE S P LY + L Y+P+ Sbjct 158 EIHYWSRDQ-LETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPD 216 Query 203 GHEAGSYNQPSDAHSWLRINSIRLGNHHLSVTILESWGPVHSL 245 G + SY QP + L +SI + N V I V+SL Sbjct 217 GVRSESYTQPLENGFLLSSSSIIIKNRVTGVEIRYQVSLVYSL 259