>gi|62185325|ref|YP_220110.1| hypothetical protein CAB712 [Chlamydophila abortus S26/3] >gi|499409816|ref|WP_011097283.1| hypothetical protein [Chlamydophila abortus]
MKLKQITVLICSLLLGFHFSG--SAKTLVHQSACADLDFLEHLLDIKYAPKDWKHKLFRW
DLKDVTDQARVKLKLEENPSVKYCQGVLSEYIASLNDFHAGITFFATEGSYLPYTLKLSS
NNRCFV--------------------VDVHTY--HSDI---SVGDEILEMDGVPILEAI-
---ESIR----TGRGAPSDYATATRMLFSRSAALGHQIPVGIATLK-IRRPSGLTRTLKV
KWRHTPEHIRDLSLISPLVQN--PVIEMKSP--RALPLLSGVSDK------CLF------
-TNAMVPYFWSELREQYKRGFYSDYNIGSKKGFLPDFGKVTWRAQ-SEPYHAYIFTVADD
RGQSHEIGFLRISTYSWTDMEDRSVENMNSPW--EDFNG----IIDVLQSKSEALIIDQT
NNPGGSVFYLYGLLSRLTDKPLETPKHRMILTQSEVQA-AIKWLEMLEGVETDEQARNAL
GQDMEGYPIDMHAVGYLQKFSHTILNCWERGDINLTVPVPLLGFAYVHPHPEHRYTHPIC
VLINEEDFSCGDLLPAIMKDNGRALIVGTTTAGAGGFVFTVDFPSRTGIKNCSLTGSLAV
R-SDGSYIENLGVSPHVSLGFTDADIQTGRYADYIGSVKRIVLQLVEKDETASHTEESAD
KITES------------
>gi|406593970|ref|YP_006741908.1| peptidase S41 family protein [Chlamydia psittaci MN] >gi|410858683|ref|YP_006974623.1| conserved hypothetical protein [Chlamydia psittaci 01DC12] >gi|504760124|ref|WP_014947226.1| hypothetical protein [Chlamydia psittaci]
MKIKHITVLVCSLLLGFSFSG--SAKTLVHQSACADLDFLEHLLDIKYAPKDWKHKLFRW
DLKDVTDQARLKIKLEENPSIKYCQGVLAEYISSLNDFHAGITFFATESSYLPYTLKLSS
NNRCFV--------------------VDVHTY--HSDI---SVGDEILEMDGVPILEAI-
---ESIR----TGRGVPSDYAAATRMLFSRSAALGHQVPLGIATLK-IRRPSGLTRTLKV
KWRHTPEHIRDLSLISPLVKN--PVIEMKSP--RALPVLSSVADK------CLF------
-TNEMVPYFWNELREQYKRGFYSDYNIGSKKGFFPDFGKVTWRAK-SGPYHAYIFTATDD
QGQPHSIGFLRISTYSWTDMEDRSVENMNSPW--EDFNE----IIDVLESKSEALIIDQT
NNPGGSVFYLYGLLSRLTDRSLETPKHRMILTQSEVQA-AVKWLEMLEGVETDEQARNTL
GQDMEGYPIDMHAVGYLQKFSHAVLKSWESGEINLTTPIPLLGFSHICPHPEHRYSHPIC
VLINEEDFSCGDLLPAIMKDNGRALIVGTTTAGAGGFVFTVDFPSRTGIKSCSLTGSLAV
R-SDGSYIENLGVSPHVFLGFTDADVQTGKYGDYISNVKRMVLQLIQKEENAAASHMEEG
GNTITES----------
>gi|89898078|ref|YP_515188.1| hypothetical protein CF0271 [Chlamydophila felis Fe/C-56] >gi|499777090|ref|WP_011457824.1| hypothetical protein [Chlamydophila felis]
MKVKRLTALICSLIMGFQISV--SAKTLVQKNACSDLDFLEHLLDVKYAPKEWKRKLFHW
NLRDATDQARLRLNIEEDPTTRYCQGVLAQYISDLNDFHAGITFYATENSHLPYTIKLSN
THKCYV--------------------VEVHTY--SSEI---SVGDEILEMDGMPIMEMI-
---ESVR----TGRGTLADYAAATRTLFSRSAALGHQIPIGIATLK-IRRPSGLTRTVKV
KWRHTPEHIQDLALIAPLVKE--PVIDMKAG--RALPLLSSNSNK------CLF------
-SNEMVPYFWKELREQYKRGLNSDYNIGSKKGFLPDFGMVTWKAK-SGPYHAYIFTCTDS
HGRSHDIGFVRISTYSWTDMEDLSIENMETPW--NDFDK----IISVLEEKTEALIVDQT
NNPGGSVFYLYALISRLTDRPLPTPTHRMILTQNEVQS-AIKWLELLEGVETDEQARQAL
GEDMEGYPIDMSAVGYLQTFSESVLKCWSNGDINLSTPMPLLGFAHVHPHPEYRYTRPVC
ILINEEDFSCGDLFPAIMKDSGRALIVGTPTAGAGGFVFNVEFPNRTGIKSCSLTGSLAV
R-QDGSYIENLGVAPHVSLSFTDRDVQSGKYPDYISNVKSLVLDLIDKQADMDASRTE--
-----------------
>gi|29840502|ref|NP_829608.1| hypothetical protein CCA00745 [Chlamydophila caviae GPIC] >gi|499316208|ref|WP_011006700.1| hypothetical protein [Chlamydophila caviae]
MKVKQITALICSLVLGFQISG--SAKTLVQKNACSDLDFLEHLLDVKYAPKEWKHKLFHW
DLKDATDQARLKLCIEENPSTSYCQGVLAEYISDLKDFHAGITFFRTENSHLPYTVKLSN
SRRCFI--------------------VDVHTY--NSEI---SVGDEILEMDGMPIMEVI-
---ESIR----TGRGALSDYAAAARTLFSRSAALGHQIPMGVATLK-IRRPSGLTRTVKA
KWRHTPEYIQDLSLISPLVKD--PIIQMRSS--RACPLLSSASEN------CLF------
-TNEMVPYFWKELRQQYKRGLSSDYNIGSKRGFLPDFGHVTWKAK-SGPYHAYVFTCTDN
HGQSHSIGFLRISTYSWTDMEDRTAMNMESPW--DDFSE----IISVLQEKTEALIIDQT
NNPGGSVFYLYALISRLTDRPLETPKHRMILTQSEVQS-AVQWLNLLEGVETDEQARNAL
GEDMEGYPIDMNAAGYLQTFSNTVLKCWANGDINLSTPMPLLGFAKVHPHPEHRYTRPIC
VLINQEDFSCGDLFPAIMKDSGRALIVGTATAGAGGFVFNVEFPNRTGIKSCSLTGSLAV
R-PDGSYIENLGVSPHIFLDFTDTDVQTGKYSDYISTVKSLVLDLIEREADNKAS-----
-----------------
>gi|15836547|ref|NP_301071.1| hypothetical protein CPj1016 [Chlamydophila pneumoniae J138] >gi|16752010|ref|NP_445376.1| hypothetical protein CP0837 [Chlamydophila pneumoniae AR39] >gi|499194655|ref|WP_010892195.1| hypothetical protein [Chlamydia pneumoniae]
MKKGKLGAIVFGLLFTSSVAG--FSKDLTKDNAYQDLNVIEHLISLKYAPLPWKELLFGW
DLSQQTQQARLQLVLEEKPTTNYCQKVLSNYVRSLNDYHAGITFYRTESAYIPYVLKLSE
DGHVFV--------------------VDVQTS--QGDI---YLGDEILEVDGMGIREAI-
---ESLR----FGRGSATDYSAAVRSLTSRSAAFGDAVPSGIAMLK-LRRPSGLIRSTPV
RWRYTPEHIGDFSLVAPLIPE--HKPQLPTQ--SCVLFRSGVNSQ--SSSSSLF------
-SSYMVPYFWEELRVQNKQRFDSNHHIGSRNGFLPTFGPILWEQD-KGPYRSYIFKAKDS
QGNPHRIGFLRISSYVWTDLEGLEEDHKDSPW--ELFGE----IIDHLEKETDALIIDQT
HNPGGSVFYLYSLLSMLTDHPLDTPKHRMIFTQDEVSS-ALHWQDLLEDVFTDEQAVAVL
GETMEGYCMDMHAVASLQNFSQSVLSSWVSGDINLSKPMPLLGFAQVRPHPKHQYTKPLF
MLIDEDDFSCGDLAPAILKDNGRATLIGKPTAGAGGFVFQVTFPNRSGIKGLSLTGSLAV
R-KDGEFIENLGVAPHIDLGFTSRDLQTSRFTDYVEAVKTIVLTSLSENAKKSEEQTSPQ
ETPEVIRVSYPTTTSAL
>gi|545631434|ref|YP_008582007.1| peptidase family S41 domain-containing protein [Chlamydia pecorum PV3056/3] >gi|545649179|ref|WP_021756808.1| peptidase family S41 domain-containing protein [Chlamydia pecorum]
MKRKLL--VVLAYCLSISCQG--FAKNVTKQNANNDLDFLYNLIGVKYAPLAWKELLFGW
NRDERTQQARLQLVLEEKPTTDYCQKVFAEYISSLNDYHAGITFYRSESAYLPYLFKLSE
DGRLFV--------------------VDVQTP--HSEI---YLGDEIIEFDGMSAREAL-
---ESIR----VGRGSQTDYSTAARNLTARSAALGHLVPSGIATLK-VRRPSGFHRTVTV
RWRYTPENIGDFSAIAPLVAD--HPPQISLD--SCY---KGASTRFAPHNQCLF------
-NSQMLPYFWSEVRALNKNRLDSDYYIGSKKGFLPNFGPVVWEQV-SGPYRANIFEVTND
QGQKFNVGFLRISTYVWTELEDLEEGRRDAPW--LTFGE----IIDVLESKTHALIIDQT
NNPGGSVFYMYGLLSMLTSTPLEVPKHRMILTQDEVSS-ALKWREELEGVYTDEHASLVL
GESMEGYHMDMRAVGALQQFSNDVLSCWASGDISLSKPISLLGFDMIYPNPNHQYTKPIF
MLINEENFSCGDLAPTILKDNNRATLIGKPTAGAGGFVFQVAFPNRSGIKGVSLTGSLAV
R-KGGEYIENLGVSPHIDLGCSPRDLQTGKYSEYINTVKSIVVAELARLGVDEKVAESA-
-----------------
>gi|338174729|ref|YP_004651539.1| chlamydia protease-like activity factor [Parachlamydia acanthamoebae UV-7] >gi|493386112|ref|WP_006342318.1| chemotaxis protein [Parachlamydia acanthamoebae]
MNIKYVINLYL-VVVFFSCHALLASDSLLRQEMVEDLHFIRKNFQIKYVPADWKLLQFGW
NLNQQFDNAEAEITSLSSPTLKDYHKILNKLFTSAADYHVNVSFYSTEMASLPFHLQ-GA
EGRYFITW------------------INEEKL--PEECLDWSIGDEVIAFDGQDIHEFV-
---QNLRRSEHDRHNEKTDQRFAERSLTLRAGMFAEDVPQGNVEVDLIHKKTGEQKSYVL
TWTYHPEQVKEIPLPSLVAR--------------------GISEKQPFFQRPYY------
-KKMMLTPLYAKFNQPESRVVEDVHNLGARKSFVPPLGSIVWQSPPDSPFHAYICETPSR
Q----RIGYIRIATYDGTDDEV------------VEFAK----LIDYFNPRTQALVVDQV
NNPGGSVFYSYGLLSLLTDQPLELPKYKMAITQEEVME-ALETLDTLKEITNDEEAIDVC
GPSLHGYAVSFELVQSVIQYFQFVLSEWEEGK-YVTSPVHLL-VNTIAPSPFVTYDKPMV
VLVNEFDISCGDSFPCILQDNQRALIFGTRTAGAGGTVLGGGHPNRLGIAGYSYTASLLE
RHTDGTPIENLGVTPDVSYSLTPEDFQNG-YKGYKAALQEAIDGLLKNTRPSSSACPLRD
RH---------------
>gi|297621220|ref|YP_003709357.1| chlamydial protease-like activity factor (CPAF) [Waddlia chondrophila WSU 86-1044] >gi|502947089|ref|WP_013182065.1| chlamydial protease-like activity factor (CPAF) [Waddlia chondrophila]
MNFK---SFFLGAILFFPLAAQVSADTKRQEAFLQELEAAKYTLTFKYGPTEWKSEYLQW
DADAAFEEAKAQMIESPQLTMRDYQRIYRDFFGSLKDYHVSTLFYSSEWSAFPIVVK-SV
NNRYFITKFDFQLSLSYSDLAFDFDEIDIERL--EAELQKCNLGDEVIAVNGVPVATLI-
---EELIDSELNGDRTPTGYALAEKMLFTRYGRRGHQVPKGDFTLT-VKPIFGKQHTVNL
AWIHVAEWVND-PQKKTVEQK--PATKWQKL--EKYLVRDYS---------VGL------
-AKDMLKSPLASLQANDNDEEEEEYDWREKS-FVPPLGQIVWETDIDEAFYAYIFK--NQ
QGK--KFGYLYLPDFS------------ASGWSAEDFMGQLITIIDKFESETEALVVDIN
DNPGGNLFYMYGVLSLLADKPLETCKNTEVLVQEDIYN-MAVIYNELIEMLNDGEVEGTI
S----GYPIDETVIRKIIGYAKSLIDQWNSGE-TRTIPDYVFGIDTLNPHHEVHYTKPIL
VLINELDFSCGDFFPAILQDNGRATLFGRKTAGAGGYVRPYQQTSQFGVALYTLTGSLAY
R-VDGKVVENLGVTPDIENQLTEKDLQHG-FIDYVRSVNKQLNALVK-------------
-----------------
>gi|62185325|ref|YP_220110.1|  hypothetical protein CAB712 [Chlamydophila abortus S26/3] >gi|499409816|ref|WP_011097283.1| hypothetical protein [Chlamydophila abortus]
MKLKQITVLIC-SL-LLGFHFSGSAKTLVHQSACADLDFLEHLLDIKYAPKDWKHKLFRW
DLKDVTDQARVKLKLEENPSVKYCQGVLSEYIASLNDFHAGITFFATEGSYLPYTLKLSS
NNRCFVV--------------------DVHT-----YHSDISVGDEILEMDGVPILEAI-
---ESIRTG----RGAPSDYATATRMLFSRSAALGHQIPVGIATLK-IRRPSGLTRTLKV
KWRHTPEHIRDLSLISPLVQN--PVIEMKSP-RA-LPLLSGVSDK------CLF------
-TNAMVPYFWSELREQYKRGFYSDYNIGSKKGFLPDFGKVTWRAQ-SEPYHAYIFTVADD
RGQSHEIGFLRISTYSWTDMEDRSVENMNSPW--EDFNG----IIDVLQSKSEALIIDQT
NNPGGSVFYLYGLLSRLTDKPLETPKHRMILTQSEVQA-AIKWLEMLEGVETDEQARNAL
GQDMEGYPIDMHAVGYLQKFSHTILNCWERGDINLTVPVPLLGFAYVHPHPEHRYTHPIC
VLINEEDFSCGDLLPAIMKDNGRALIVGTTTAGAGGFVFTVDFPSRTGIKNCSLTGSLAV
R-SDGSYIENLGVSPHVSLGFTDADIQTGRYADYIGSVKRIVLQLVEKDETAS--HT--E
E--------SADKITES
>gi|89898078|ref|YP_515188.1|  hypothetical protein CF0271 [Chlamydophila felis Fe/C-56] >gi|499777090|ref|WP_011457824.1| hypothetical protein [Chlamydophila felis]
MKVKRLTALIC-SL-IMGFQISVSAKTLVQKNACSDLDFLEHLLDVKYAPKEWKRKLFHW
NLRDATDQARLRLNIEEDPTTRYCQGVLAQYISDLNDFHAGITFYATENSHLPYTIKLSN
THKCYVV--------------------EVHT-----YSSEISVGDEILEMDGMPIMEMI-
---ESVRTG----RGTLADYAAATRTLFSRSAALGHQIPIGIATLK-IRRPSGLTRTVKV
KWRHTPEHIQDLALIAPLVKE--PVIDMKAG-RA-LPLLSSNSNK------CLF------
-SNEMVPYFWKELREQYKRGLNSDYNIGSKKGFLPDFGMVTWKAK-SGPYHAYIFTCTDS
HGRSHDIGFVRISTYSWTDMEDLSIENMETPW--NDFDK----IISVLEEKTEALIVDQT
NNPGGSVFYLYALISRLTDRPLPTPTHRMILTQNEVQS-AIKWLELLEGVETDEQARQAL
GEDMEGYPIDMSAVGYLQTFSESVLKCWSNGDINLSTPMPLLGFAHVHPHPEYRYTRPVC
ILINEEDFSCGDLFPAIMKDSGRALIVGTPTAGAGGFVFNVEFPNRTGIKSCSLTGSLAV
R-QDGSYIENLGVAPHVSLSFTDRDVQSGKYPDYISNVKSLVLDLIDKQADMDA------
-------------SRTE
>gi|29840502|ref|NP_829608.1|  hypothetical protein CCA00745 [Chlamydophila caviae GPIC] >gi|499316208|ref|WP_011006700.1| hypothetical protein [Chlamydophila caviae]
MKVKQITALIC-SL-VLGFQISGSAKTLVQKNACSDLDFLEHLLDVKYAPKEWKHKLFHW
DLKDATDQARLKLCIEENPSTSYCQGVLAEYISDLKDFHAGITFFRTENSHLPYTVKLSN
SRRCFIV--------------------DVHT-----YNSEISVGDEILEMDGMPIMEVI-
---ESIRTG----RGALSDYAAAARTLFSRSAALGHQIPMGVATLK-IRRPSGLTRTVKA
KWRHTPEYIQDLSLISPLVKD--PIIQMRSS-RA-CPLLSSASEN------CLF------
-TNEMVPYFWKELRQQYKRGLSSDYNIGSKRGFLPDFGHVTWKAK-SGPYHAYVFTCTDN
HGQSHSIGFLRISTYSWTDMEDRTAMNMESPW--DDFSE----IISVLQEKTEALIIDQT
NNPGGSVFYLYALISRLTDRPLETPKHRMILTQSEVQS-AVQWLNLLEGVETDEQARNAL
GEDMEGYPIDMNAAGYLQTFSNTVLKCWANGDINLSTPMPLLGFAKVHPHPEHRYTRPIC
VLINQEDFSCGDLFPAIMKDSGRALIVGTATAGAGGFVFNVEFPNRTGIKSCSLTGSLAV
R-PDGSYIENLGVSPHIFLDFTDTDVQTGKYSDYISTVKSLVLDLIEREADN--------
--------------KAS
>gi|406593970|ref|YP_006741908.1|  peptidase S41 family protein [Chlamydia psittaci MN] >gi|410858683|ref|YP_006974623.1| conserved hypothetical protein [Chlamydia psittaci 01DC12] >gi|504760124|ref|WP_014947226.1| hypothetical protein [Chlamydia psittaci]
MKIKHITVLVC-SL-LLGFSFSGSAKTLVHQSACADLDFLEHLLDIKYAPKDWKHKLFRW
DLKDVTDQARLKIKLEENPSIKYCQGVLAEYISSLNDFHAGITFFATESSYLPYTLKLSS
NNRCFVV--------------------DVHT-----YHSDISVGDEILEMDGVPILEAI-
---ESIRTG----RGVPSDYAAATRMLFSRSAALGHQVPLGIATLK-IRRPSGLTRTLKV
KWRHTPEHIRDLSLISPLVKN--PVIEMKSP-RA-LPVLSSVADK------CLF------
-TNEMVPYFWNELREQYKRGFYSDYNIGSKKGFFPDFGKVTWRAK-SGPYHAYIFTATDD
QGQPHSIGFLRISTYSWTDMEDRSVENMNSPW--EDFNE----IIDVLESKSEALIIDQT
NNPGGSVFYLYGLLSRLTDRSLETPKHRMILTQSEVQA-AVKWLEMLEGVETDEQARNTL
GQDMEGYPIDMHAVGYLQKFSHAVLKSWESGEINLTTPIPLLGFSHICPHPEHRYSHPIC
VLINEEDFSCGDLLPAIMKDNGRALIVGTTTAGAGGFVFTVDFPSRTGIKSCSLTGSLAV
R-SDGSYIENLGVSPHVFLGFTDADVQTGKYGDYISNVKRMVLQLIQKEENAAASHM--E
E--------GGNTITES
>gi|15836547|ref|NP_301071.1|  hypothetical protein CPj1016 [Chlamydophila pneumoniae J138] >gi|16752010|ref|NP_445376.1| hypothetical protein CP0837 [Chlamydophila pneumoniae AR39] >gi|499194655|ref|WP_010892195.1| hypothetical protein [Chlamydia pneumoniae]
MKKGKLGAIVF-GL-LFTSSVAGFSKDLTKDNAYQDLNVIEHLISLKYAPLPWKELLFGW
DLSQQTQQARLQLVLEEKPTTNYCQKVLSNYVRSLNDYHAGITFYRTESAYIPYVLKLSE
DGHVFVV--------------------DVQT-----SQGDIYLGDEILEVDGMGIREAI-
---ESLRFG----RGSATDYSAAVRSLTSRSAAFGDAVPSGIAMLK-LRRPSGLIRSTPV
RWRYTPEHIGDFSLVAPLIPEHKPQLPTQSCVLFRSGVNSQSSSS------SLF------
-SSYMVPYFWEELRVQNKQRFDSNHHIGSRNGFLPTFGPILWEQD-KGPYRSYIFKAKDS
QGNPHRIGFLRISSYVWTDLEGLEEDHKDSPW--ELFGE----IIDHLEKETDALIIDQT
HNPGGSVFYLYSLLSMLTDHPLDTPKHRMIFTQDEVSS-ALHWQDLLEDVFTDEQAVAVL
GETMEGYCMDMHAVASLQNFSQSVLSSWVSGDINLSKPMPLLGFAQVRPHPKHQYTKPLF
MLIDEDDFSCGDLAPAILKDNGRATLIGKPTAGAGGFVFQVTFPNRSGIKGLSLTGSLAV
R-KDGEFIENLGVAPHIDLGFTSRDLQTSRFTDYVEAVKTIVLTSLSENAKKSEEQTSPQ
ETPEVIRVSYPTTTSAL
>gi|545631434|ref|YP_008582007.1|  peptidase family S41 domain-containing protein [Chlamydia pecorum PV3056/3] >gi|545649179|ref|WP_021756808.1| peptidase family S41 domain-containing protein [Chlamydia pecorum]
MKRKLLVVLAY----CLSISCQGFAKNVTKQNANNDLDFLYNLIGVKYAPLAWKELLFGW
NRDERTQQARLQLVLEEKPTTDYCQKVFAEYISSLNDYHAGITFYRSESAYLPYLFKLSE
DGRLFVV--------------------DVQT-----PHSEIYLGDEIIEFDGMSAREAL-
---ESIRVG----RGSQTDYSTAARNLTARSAALGHLVPSGIATLK-VRRPSGFHRTVTV
RWRYTPENIGDFSAIAPLVADHPPQISLDSCYKG-ASTRFAPHNQ------CLF------
-NSQMLPYFWSEVRALNKNRLDSDYYIGSKKGFLPNFGPVVWEQV-SGPYRANIFEVTND
QGQKFNVGFLRISTYVWTELEDLEEGRRDAPW--LTFGE----IIDVLESKTHALIIDQT
NNPGGSVFYMYGLLSMLTSTPLEVPKHRMILTQDEVSS-ALKWREELEGVYTDEHASLVL
GESMEGYHMDMRAVGALQQFSNDVLSCWASGDISLSKPISLLGFDMIYPNPNHQYTKPIF
MLINEENFSCGDLAPTILKDNNRATLIGKPTAGAGGFVFQVAFPNRSGIKGVSLTGSLAV
R-KGGEYIENLGVSPHIDLGCSPRDLQTGKYSEYINTVKSIVVAELARLGVDEK------
------------VAESA
>gi|338174729|ref|YP_004651539.1|  chlamydia protease-like activity factor [Parachlamydia acanthamoebae UV-7] >gi|493386112|ref|WP_006342318.1| chemotaxis protein [Parachlamydia acanthamoebae]
MNIKYVINLYL-VVVFFSCHALLASDSLLRQEMVEDLHFIRKNFQIKYVPADWKLLQFGW
NLNQQFDNAEAEITSLSSPTLKDYHKILNKLFTSAADYHVNVSFYSTEMASLPFHLQGA-
EGRYFIT--------------------WINEEKLPEECLDWSIGDEVIAFDGQDIHEFV-
---QNLRRSEHDRHNEKTDQRFAERSLTLRAGMFAEDVPQGNVEVDLIHKKTGEQKSYVL
TWTYHPEQVKEIPLPS-LVAR--GISEK-----------QPFFQR------PYY------
-KKMMLTPLYAKFNQPESRVVEDVHNLGARKSFVPPLGSIVWQSPPDSPFHAYICETPS-
---RQRIGYIRIATYDGTDDEV------------VEFAK----LIDYFNPRTQALVVDQV
NNPGGSVFYSYGLLSLLTDQPLELPKYKMAITQEEVME-ALETLDTLKEITNDEEAIDVC
GPSLHGYAVSFELVQSVIQYFQFVLSEWEEGKY-VTSPVHLL-VNTIAPSPFVTYDKPMV
VLVNEFDISCGDSFPCILQDNQRALIFGTRTAGAGGTVLGGGHPNRLGIAGYSYTASLLE
RHTDGTPIENLGVTPDVSYSLTPEDFQNG-YKGYKAALQEAIDGLLKNTRPSSS--A---
----------CPLRDRH
>gi|297621220|ref|YP_003709357.1|  chlamydial protease-like activity factor (CPAF) [Waddlia chondrophila WSU 86-1044] >gi|502947089|ref|WP_013182065.1| chlamydial protease-like activity factor (CPAF) [Waddlia chondrophila]
MNFKSFFL-GA-IL-FFPLAAQVSADTKRQEAFLQELEAAKYTLTFKYGPTEWKSEYLQW
DADAAFEEAKAQMIESPQLTMRDYQRIYRDFFGSLKDYHVSTLFYSSEWSAFPIVVKSV-
NNRYFITKFDFQLSLSYSDLAFDFDEIDIERL--EAELQKCNLGDEVIAVNGVPVATLIE
ELIDSELNG----DRTPTGYALAEKMLFTRYGRRGHQVPKGDFTLT-VKPIFGKQHTVNL
AWIHVAEWVNDPQKKT-VEQK--PATKWQKL------------EK------YLVRDYSVG
LAKDMLKSPLASLQANDNDEEE-EEYDWREKSFVPPLGQIVWETDIDEAFYAYIFKNQ--
QG--KKFGYLYLPDFSASGWSA------EDFM--GQLIT----IIDKFESETEALVVDIN
DNPGGNLFYMYGVLSLLADKPLETCKNTEVLVQEDIYNMAVIYNELIEML-NDGEV----
EGTISGYPIDETVIRKIIGYAKSLIDQWNSGET-RTIPDYVFGIDTLNPHHEVHYTKPIL
VLINELDFSCGDFFPAILQDNGRATLFGRKTAGAGGYVRPYQQTSQFGVALYTLTGSLAY
R-VDGKVVENLGVTPDIENQLTEKDLQHG-FIDYVRSVNKQLNALV--------------
----------------K
