FastQCFastQC Report
Вс 30 ноя 2014
Ath_tae_CTTGTA_L003_R1_005.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R1_005.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC8550.024.71020948-49
TATGCCG9400.023.4841646-47
TCGGAAG19450.020.5046833
GAGCACA18900.020.3643119
CGTATGC10500.019.89110844-45
GCCGTCT9750.019.23423848-49
ATGCCGT10000.017.80250746-47
AGAGCAC20350.017.745368
GTATGCC10000.017.08827244-45
GATCGGA25850.015.8033271
CGGAAGA25100.015.3221954
GCACACG12250.015.32152810-11
CACACGT15500.015.02066512-13
AGTCACC15050.014.99115828-29
CGTCTGA15600.014.9202716-17
CACGTCT16050.014.20972114-15
ATCGGAA30400.013.7505392
ACGTCTG14050.013.696135514-15
GAAGAGC29500.013.3625916
CCGTCTT17500.013.02126350-51
Produced by FastQC (version 0.11.2)