RID: AZTP4HBV016 Job Title:RNA-directed RNA polymerase p57 Program: BLASTP Query: NS1AB_HASV8 Q9IFX2 RNA-directed RNA polymerase p57 (2.7.7.48) ID: lcl|Query_61598(amino acid) Length: 503 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Human astrov... NA 43358 1052 1052 100% 0.0 100.00 1417 Q9IFX2.2 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Human astrov... NA 35300 1041 1041 100% 0.0 98.61 1415 Q3ZN06.2 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Human astrov... NA 12456 1040 1040 100% 0.0 98.41 1436 Q67726.1 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Human astrov... NA 35741 1021 1021 100% 0.0 96.62 1416 Q4TWH8.2 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Mamastroviru... NA 1239577 505 505 97% 3e-165 50.89 1351 Q9JH66.2 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Mamastroviru... NA 1239574 501 501 97% 2e-163 51.79 1381 Q80KJ7.2 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Avian nephri... NA 336960 363 363 93% 3e-111 43.60 1512 Q9JGF2.1 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Turkey astro... NA 246343 353 353 88% 4e-107 42.08 1638 Q9ILI5.2 RecName: Full=Non-structural polyprotein 1AB; Contains: RecNam... Turkey astro... NA 364370 329 329 93% 6e-99 39.96 1611 Q9JH69.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Triticum mos... NA 1289472 53.9 53.9 28% 3e-06 28.87 3112 A4KZ49.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Sweet potato... NA 652105 53.9 53.9 31% 3e-06 27.88 3456 P89201.1 RecName: Full=Genome polyprotein 1; Contains: RecName:... Barley mild ... NA 103900 52.4 52.4 22% 9e-06 30.00 2258 P90245.1 RecName: Full=Genome polyprotein 1; Contains: RecName:... Barley yello... NA 31728 52.0 52.0 23% 1e-05 28.80 2412 Q04574.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 11... NA 31705 50.8 50.8 23% 2e-05 28.33 2195 P29813.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 12068 50.8 50.8 24% 2e-05 27.87 2201 P21404.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Blackberry v... NA 686949 50.1 50.1 21% 5e-05 25.89 3491 A0AUJ5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 5 ... NA 176283 49.3 49.3 23% 7e-05 27.50 2196 Q9YLJ1.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103903 49.3 49.3 23% 7e-05 27.50 2185 P03313.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 9 ... NA 103915 49.3 49.3 23% 7e-05 27.50 2193 Q66849.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103906 49.3 49.3 23% 8e-05 27.50 2183 P08292.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103904 49.3 49.3 23% 8e-05 27.50 2185 Q66282.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 30... NA 176284 48.9 48.9 23% 9e-05 27.50 2194 Q9WN78.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231473 48.9 48.9 23% 9e-05 27.50 2187 Q9YLG5.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103907 48.9 48.9 23% 9e-05 27.50 2185 Q03053.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231474 48.9 48.9 23% 1e-04 27.50 2184 Q9QL88.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 6 ... NA 103913 48.9 48.9 23% 1e-04 27.50 2191 Q66474.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 12... NA 103909 48.9 48.9 23% 1e-04 27.50 2193 Q66575.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P3;... Coxsackievir... NA 103902 48.5 48.5 23% 1e-04 26.67 2182 P08291.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103905 48.1 48.1 23% 2e-04 27.50 2183 Q86887.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Swine vesicu... NA 12077 47.0 47.0 23% 4e-04 27.05 2185 P13900.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117128 46.6 46.6 53% 5e-04 25.78 3080 P18479.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 1 ... NA 103908 46.6 46.6 23% 5e-04 27.05 2184 O91734.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Swine vesicu... NA 12076 46.6 46.6 23% 5e-04 27.05 2185 P16604.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 9 ... NA 103914 45.8 45.8 23% 8e-04 26.67 2203 Q66577.3 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 45.8 45.8 33% 0.001 25.40 3473 Q83034.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Pepper mottl... NA 31737 45.8 45.8 46% 0.001 20.68 3068 Q01500.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 45.8 45.8 33% 0.001 25.40 3471 Q91PP5.1 RecName: Full=Replication polyprotein; Includes: RecName:... Nora virus NA 363716 45.1 45.1 30% 0.002 26.67 2104 Q27YG9.2 RecName: Full=Genome polyprotein; Contains: RecName:... Brome streak... NA 117139 44.7 44.7 22% 0.002 30.25 942 Q65729.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Brome streak... NA 117138 45.1 45.1 22% 0.002 30.25 3093 Q65730.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Vira... Ornithogalum... NA 12204 43.1 43.1 59% 0.005 23.82 1136 P20234.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Potato virus... NA 31739 43.5 43.5 64% 0.005 21.26 3061 Q02963.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117130 43.1 43.1 53% 0.006 25.44 3083 O36979.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Pea seed-bor... NA 31736 42.7 42.7 22% 0.007 28.57 3206 P29152.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Ryegrass mos... NA 652106 42.7 42.7 68% 0.008 22.43 3086 O11436.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Zucchini yel... NA 117129 42.7 42.7 53% 0.009 26.30 3083 Q89330.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Peanut mottl... NA 103926 41.6 41.6 27% 0.016 22.07 3099 O56075.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12084 41.6 41.6 22% 0.016 27.59 2207 P06210.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12085 41.6 41.6 22% 0.017 27.59 2205 P23069.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P3;... Poliovirus t... NA 12087 41.6 41.6 23% 0.018 26.45 2206 P06209.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12088 41.6 41.6 23% 0.019 26.45 2206 P03302.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12081 41.6 41.6 23% 0.019 26.45 2209 P03300.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 36404 41.6 41.6 23% 0.019 26.45 2214 P36290.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 12070 41.2 41.2 23% 0.026 26.83 2206 P22055.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Enterovirus D68 NA 42789 40.8 40.8 22% 0.034 25.86 2188 Q68T42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Potato virus... NA 12219 40.8 40.8 64% 0.035 21.56 3063 P18247.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1... Beet mosaic ... NA 114921 40.8 40.8 53% 0.035 24.56 3085 Q6XW15.1 Alignments: >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Human astrovirus 8] Sequence ID: Q9IFX2.2 Length: 1417 Range 1: 915 to 1417 Score:1052 bits(2720), Expect:0.0, Method:Compositional matrix adjust., Identities:503/503(100%), Positives:503/503(100%), Gaps:0/503(0%) Query 1 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 60 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH Sbjct 915 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 974 Query 61 AFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 120 AFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI Sbjct 975 AFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 1034 Query 121 TATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeii 180 TATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLKKEII Sbjct 1035 TATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLKKEII 1094 Query 181 keekiRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 240 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ Sbjct 1095 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 1154 Query 241 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR 300 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR Sbjct 1155 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR 1214 Query 301 HVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGD 360 HVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGD Sbjct 1215 HVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGD 1274 Query 361 DRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 420 DRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS Sbjct 1275 DRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 1334 Query 421 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 480 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG Sbjct 1335 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 1394 Query 481 LPARLTEEQLHRIWRGGPKKCDG 503 LPARLTEEQLHRIWRGGPKKCDG Sbjct 1395 LPARLTEEQLHRIWRGGPKKCDG 1417 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Human astrovirus 4] Sequence ID: Q3ZN06.2 Length: 1415 Range 1: 913 to 1415 Score:1041 bits(2692), Expect:0.0, Method:Compositional matrix adjust., Identities:496/503(99%), Positives:500/503(99%), Gaps:0/503(0%) Query 1 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 60 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH Sbjct 913 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 972 Query 61 AFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 120 AFEEYGPTTWGPQAF+KSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI Sbjct 973 AFEEYGPTTWGPQAFIKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 1032 Query 121 TATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeii 180 TATEKNTDSTPAYPKMNYFDTEE+YLEAHGWAPYIREFTRVFKGDKPEVLWYLFLKKEII Sbjct 1033 TATEKNTDSTPAYPKMNYFDTEENYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLKKEII 1092 Query 181 keekiRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 240 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ Sbjct 1093 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 1152 Query 241 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR 300 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKY+HVHEWYVDNLLNR Sbjct 1153 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYKHVHEWYVDNLLNR 1212 Query 301 HVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGD 360 HVLLPSGEVTLQTRGNPSGQFST MDNNMVNFW QAFEFAYFNGPDKDLWKTYDTVVYGD Sbjct 1213 HVLLPSGEVTLQTRGNPSGQFSTTMDNNMVNFWSQAFEFAYFNGPDKDLWKTYDTVVYGD 1272 Query 361 DRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 420 DRLSTTPSVPD+YEERVI MYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS Sbjct 1273 DRLSTTPSVPDDYEERVINMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 1332 Query 421 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 480 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG Sbjct 1333 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 1392 Query 481 LPARLTEEQLHRIWRGGPKKCDG 503 LPARLTEEQLHRIWRGGPKKCDG Sbjct 1393 LPARLTEEQLHRIWRGGPKKCDG 1415 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Human astrovirus 1] Sequence ID: Q67726.1 Length: 1436 Range 1: 934 to 1436 Score:1040 bits(2690), Expect:0.0, Method:Compositional matrix adjust., Identities:495/503(98%), Positives:501/503(99%), Gaps:0/503(0%) Query 1 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 60 GAQNYHSLDAWK LLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH Sbjct 934 GAQNYHSLDAWKLLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 993 Query 61 AFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 120 AFEEYGPTTWGPQAF+KSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI Sbjct 994 AFEEYGPTTWGPQAFIKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 1053 Query 121 TATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeii 180 TATEKNTDSTPAYPKMNYFDTEE+YLEAHGWAPYIREFTRV+KGDKPEVLWYLFLKKEII Sbjct 1054 TATEKNTDSTPAYPKMNYFDTEENYLEAHGWAPYIREFTRVYKGDKPEVLWYLFLKKEII 1113 Query 181 keekiRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 240 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ Sbjct 1114 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 1173 Query 241 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR 300 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYV+NLLNR Sbjct 1174 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVNNLLNR 1233 Query 301 HVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGD 360 HVLLPSGEVTLQTRGNPSGQFST MDNNMVNFWLQAFEFAYFNGPD+DLWKTYDTVVYGD Sbjct 1234 HVLLPSGEVTLQTRGNPSGQFSTTMDNNMVNFWLQAFEFAYFNGPDRDLWKTYDTVVYGD 1293 Query 361 DRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 420 DRLSTTPSVPD+YEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS Sbjct 1294 DRLSTTPSVPDDYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 1353 Query 421 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 480 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG Sbjct 1354 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 1413 Query 481 LPARLTEEQLHRIWRGGPKKCDG 503 LPARLTEEQLHRIWRGGPKKCDG Sbjct 1414 LPARLTEEQLHRIWRGGPKKCDG 1436 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Human astrovirus 5] Sequence ID: Q4TWH8.2 Length: 1416 Range 1: 914 to 1416 Score:1021 bits(2641), Expect:0.0, Method:Compositional matrix adjust., Identities:486/503(97%), Positives:499/503(99%), Gaps:0/503(0%) Query 1 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWH 60 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPI+RPIFDDKKPRDDLLGLLPEPTWH Sbjct 914 GAQNYHSLDAWKSLLEPPRERRCVPANFPLLGHLPIDRPIFDDKKPRDDLLGLLPEPTWH 973 Query 61 AFEEYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 120 AFEEYGPTTWGPQAF+KSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI Sbjct 974 AFEEYGPTTWGPQAFIKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHI 1033 Query 121 TATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeii 180 TATEKNTDSTPAYPKMNYFDTEE YLE++GWAPYIREFTRVFKGDKPEVLWYLFLKKEII Sbjct 1034 TATEKNTDSTPAYPKMNYFDTEEKYLESYGWAPYIREFTRVFKGDKPEVLWYLFLKKEII 1093 Query 181 keekiRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQ 240 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHT+TSVGQCGWSPMEGGFKKTMQ Sbjct 1094 KEEKIRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTETSVGQCGWSPMEGGFKKTMQ 1153 Query 241 RLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR 300 RLVNKGNK+FIEFDWTRYDGTIPP+LF+HIKEIRWNFINKDQREKYRHVHEWYVDNLLNR Sbjct 1154 RLVNKGNKYFIEFDWTRYDGTIPPSLFRHIKEIRWNFINKDQREKYRHVHEWYVDNLLNR 1213 Query 301 HVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGD 360 HVLLPSGEVTLQTRGNPSGQFST MDNNM+NFWLQAFEFAYFNGP+KDLWKTYDTVVYGD Sbjct 1214 HVLLPSGEVTLQTRGNPSGQFSTTMDNNMINFWLQAFEFAYFNGPNKDLWKTYDTVVYGD 1273 Query 361 DRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 420 DRLSTTPSVP+NYEERVI MYRDIFGMWVKPGKVICR+SIVGLSFCGFTVN +LEPVPTS Sbjct 1274 DRLSTTPSVPENYEERVIDMYRDIFGMWVKPGKVICRESIVGLSFCGFTVNADLEPVPTS 1333 Query 421 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 480 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG Sbjct 1334 PEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRDSG 1393 Query 481 LPARLTEEQLHRIWRGGPKKCDG 503 LPARLTEEQLHRIWRGGPKKCDG Sbjct 1394 LPARLTEEQLHRIWRGGPKKCDG 1416 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Mamastrovirus 13] Sequence ID: Q9JH66.2 Length: 1351 Range 1: 845 to 1347 Score:505 bits(1301), Expect:3e-165, Method:Compositional matrix adjust., Identities:257/505(51%), Positives:351/505(69%), Gaps:15/505(2%) Query 8 LDAWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWHAFEEYGP 67 LD W+ L+EP +E+ VP +PLLG +P++RPI D P D+LL LLPEP + P Sbjct 845 LDYWEQLVEPSKEKFLVPPEYPLLGVVPLDRPISDFDAPVDNLLALLPEPESPDLG-FEP 903 Query 68 TTWGPQAFVKSFDKFFYAEPI-DFFSEYPQLCAFADWATYREFRYLEDTRVIHITATEKN 126 WGP+A+VKSF+KF +A+P + YP+ AFA+ +REF +L D+ V ITAT KN Sbjct 904 AVWGPEAYVKSFEKFDFADPDPNIEKNYPREWAFANLVLHREFDFLADSVVKDITATSKN 963 Query 127 TDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeiikeekiR 186 ++STP +PK ++ TE +YL G+A Y+ E+ R+ G +P VLWYLFLKKEI+K K+R Sbjct 964 SESTPGFPKTYWWKTEAEYLAKRGYADYVSEWNRIRGGARPNVLWYLFLKKEILKSTKVR 1023 Query 187 NSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVNKG 246 ++DIRQI+C+DPI+ RIG C E QN MK+ T T + QCGWSP GGF +QRLV KG Sbjct 1024 DADIRQIICSDPIFARIGCCFEEDQNERMKRRTKTRMPQCGWSPFFGGFNDRIQRLVAKG 1083 Query 247 NKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKD-QREKYRHVHEWYVDNLLNRHVLLP 305 N ++IEFDWTRYDGTIP +FKHIK R++ + K+ Q + R+++ WYVDN+L R+V +P Sbjct 1084 NPYWIEFDWTRYDGTIPSQIFKHIKNFRFSMLAKEYQTPELRNMYHWYVDNILRRYVCMP 1143 Query 306 SGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDL------WKTYDTVVYG 359 SGE+T+Q +GNPSGQ ST MDNN+VN +LQAFE+AY + P+K + W++YD+++YG Sbjct 1144 SGEITIQHKGNPSGQVSTTMDNNLVNVFLQAFEYAYLH-PEKSMDELRKDWESYDSLIYG 1202 Query 360 DDRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNE---NLEP 416 DDRL+T+PSVP++Y RV+ MY+DIFGMWVKP KV S VGLSFCGF + P Sbjct 1203 DDRLTTSPSVPNDYVTRVVAMYKDIFGMWVKPEKVKVSHSPVGLSFCGFVITHQDGQYLP 1262 Query 417 VPTSPEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQL 476 VP KL+ASLL+P K L ++++L+GKLLCY++L + D+ F+ Y+ L A+ Sbjct 1263 VPAEEAKLLASLLRPTKKLENMDALYGKLLCYRILNHNLPNDNKFRNYILVALEVMARHY 1322 Query 477 RDSGL--PARLTEEQLHRIWRGGPK 499 G P +TE L ++WRGGPK Sbjct 1323 SSRGEEPPFYVTESMLDKLWRGGPK 1347 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Mamastrovirus 10] Sequence ID: Q80KJ7.2 Length: 1381 Range 1: 882 to 1381 Score:501 bits(1290), Expect:2e-163, Method:Compositional matrix adjust., Identities:261/504(52%), Positives:351/504(69%), Gaps:16/504(3%) Query 8 LDAWKSLLEPPRE-RRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLP-EPTWHAFEEY 65 LD W+ ++ PP RR VP ++P++G LPINRPI D +P DDLL LLP P A Y Sbjct 882 LDHWEKMMAPPDAGRRLVPDDYPVIGKLPINRPISDWDEPVDDLLNLLPPAPDSSA---Y 938 Query 66 GPTTWGPQAFVKSFDKFFYAEPIDFFS-EYPQLCAFADWATYREFRYLEDTRVIHITATE 124 GP WGP+A+VKSF+KF YA+P D ++P+ FA REF +LE + ++ ITAT Sbjct 939 GPAVWGPEAYVKSFEKFTYAKPRDSIKRDFPREWKFACQVLRREFDFLEGSVIMDITATS 998 Query 125 KNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeiikeek 184 KN DST AYPK NY+ TE +YL G+ Y+ E+ R+ G +P+VLW LFLKKEI+K +K Sbjct 999 KNADSTCAYPKCNYWKTEAEYLSERGYQDYVSEYKRIHGGARPKVLWLLFLKKEILKVKK 1058 Query 185 iRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVN 244 I +SDIRQIVCADPI+ RIG E HQN LMK T T + QCGW+P GFK+ ++RL++ Sbjct 1059 INDSDIRQIVCADPIFARIGNAFEEHQNTLMKHRTATRMPQCGWTPFFNGFKRRIERLLS 1118 Query 245 KGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKD-QREKYRHVHEWYVDNLLNRHVL 303 + N FIEFDWTRYDGTIP +F IK R++ + ++ Q + R +++WY D+LL+R+VL Sbjct 1119 RKNSVFIEFDWTRYDGTIPREIFAKIKSFRFSCLAEEFQTDANRAMYQWYCDSLLDRYVL 1178 Query 304 LPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDL------WKTYDTVV 357 +PSGEVT QT+GNPSGQ ST MDNN+ N + QAFE+AY + P+K + W D+++ Sbjct 1179 MPSGEVTRQTKGNPSGQISTTMDNNLCNVFFQAFEYAYIH-PEKSIEELRESWDRCDSLI 1237 Query 358 YGDDRLSTTPSVPDNYEERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPV 417 YGDDRL+T VP +Y +RV+ MY+D+FGMWVKP KVI D+ VGLSFCGFTV +L PV Sbjct 1238 YGDDRLTTFDHVPPDYVDRVVHMYKDVFGMWVKPEKVIVSDTPVGLSFCGFTVGPDLMPV 1297 Query 418 PTSPEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLR 477 PT +KL+ASL+ P K L D+ +L+ K+LCY++L ++++H FK YV L A+ +R Sbjct 1298 PTDCDKLVASLVTPTKKLQDIVALYSKVLCYRILGHNLSDEHEFKRYVRVALEVLARHIR 1357 Query 478 DSG--LPARLTEEQLHRIWRGGPK 499 + G P +TE L ++WRGGPK Sbjct 1358 NLGGEEPVHVTERLLDKLWRGGPK 1381 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Avian nephritis virus 1] Sequence ID: Q9JGF2.1 Length: 1512 Range 1: 1026 to 1498 Score:363 bits(932), Expect:3e-111, Method:Compositional matrix adjust., Identities:211/484(44%), Positives:287/484(59%), Gaps:24/484(4%) Query 11 WKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWHAFEEYGPTTW 70 W+ +EP R VP N+P+LGH+ I++ + KK D LL +L +P F TTW Sbjct 1026 WQIYMEPLDLRITVPENYPILGHIAIDKLVERKKKVNDPLLKMLEQPKCEGFTS---TTW 1082 Query 71 GPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHITATEKNTDST 130 +A+ KSF+KF Y + +DF +YP+L AFAD A E Y+E T VI I T KN DST Sbjct 1083 TRKAYTKSFEKFDYGDAVDFVQDYPELTAFADAAVLAEVGYMEGTHVIPIQETSKNMDST 1142 Query 131 PAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeiikeekiRNSDI 190 PA+PKM FD+E DYLEAHG YI V G KP LW+ FLK EI+KE+K+ DI Sbjct 1143 PAFPKMLDFDSERDYLEAHGMKEYIDTQLGVQSG-KP--LWWCFLKNEILKEKKVSEDDI 1199 Query 191 RQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVNKGNKHF 250 R I C+DP+ TR+GA ++ QN MK+ T+T Q GW+P GG K ++R+ + G Sbjct 1200 RIITCSDPVITRLGASFDSEQNERMKERTETHHAQVGWTPFFGGLDKRVRRITSCGRTQV 1259 Query 251 IEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVT 310 +E DWTR+DGTIP LF+ ++E+R F+ + R +Y + +WY L +R LLP+GEVT Sbjct 1260 LELDWTRFDGTIPVQLFQRMRELRKFFLTRRSRRRYGKLLDWYNAQLTDRITLLPTGEVT 1319 Query 311 LQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPD-------KDLWKTYDTVVYGDDRL 363 +GNPSGQFST +DNN+VN WL AFEF Y + + +D D + YGDDRL Sbjct 1320 HVKKGNPSGQFSTTVDNNLVNEWLTAFEFGYQHLENHGIIPTVRDYRANVDFLCYGDDRL 1379 Query 364 STTPSVPDNYEERV-ITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEP-----V 417 NY+ +V I MY++IFGMWVKP + DS G SFCGFT+ ++P Sbjct 1380 LAFNPSFVNYDPQVTIDMYKNIFGMWVKPENIKLFDSPTGSSFCGFTL---VKPHGQWVG 1436 Query 418 PTSPEKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLR 477 + KL+ SL P + LPDLESL GKL+ +++ D Y+ + + R + R Sbjct 1437 VVNVNKLLQSLKTPTRRLPDLESLWGKLVSLKIMC--YHSDPEAVSYLSNQIRRVEEYAR 1494 Query 478 DSGL 481 G+ Sbjct 1495 AEGI 1498 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Turkey astrovirus 2] Sequence ID: Q9ILI5.2 Length: 1638 Range 1: 1147 to 1597 Score:353 bits(905), Expect:4e-107, Method:Compositional matrix adjust., Identities:194/461(42%), Positives:280/461(60%), Gaps:28/461(6%) Query 10 AWKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWHAFEEYGPTT 69 AW+ + PP + +P N L+GH+P+++ + KK +D LLGL+ W + Y TT Sbjct 1147 AWEDDILPPEGKTALPENVTLIGHIPVDKLVSRTKKVQDPLLGLVT--PWKQ-DMYDSTT 1203 Query 70 WGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHITATEKNTDS 129 W +A+ K F+KF Y +P+DF +Y + D RE Y+ ++ + I +TEKN +S Sbjct 1204 WTVKAYTKMFEKFHYHDPVDFVEQYAEFVLLCDNMVLREHDYMANSNITPIMSTEKNVNS 1263 Query 130 TPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEV-----LWYLFLkkeiikeek 184 TPAYPK +D+E +YLE GW Y+ + PE LW+ FLK E++K EK Sbjct 1264 TPAYPKFQAYDSEAEYLEDCGWQEYLDVVS------DPETINRRPLWWCFLKNEVLKREK 1317 Query 185 iRNSDIRQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVN 244 I +SDIR I+C DPI+TRIGA E QN MKQ T+ Q GW+P GG + ++RL Sbjct 1318 IEDSDIRMILCTDPIFTRIGAMFEQDQNNRMKQQTEIRSAQVGWTPFFGGLDRRVRRLYG 1377 Query 245 KGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQRE-KYRHVHEWYVDNLLNRHVL 303 G+++F+E DWTRYDGTIP +LF I++IR+ F++ + K R ++ WYV NLL + +L Sbjct 1378 DGDRYFVEMDWTRYDGTIPKSLFWRIRQIRFFFLHDSHKTPKMRRLYNWYVKNLLEKIIL 1437 Query 304 LPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYF----NG---PDKDLWKTYDTV 356 LP+GEV +GNPSGQFST +DNNM+N WL FE +Y G +K+L + + Sbjct 1438 LPTGEVCQVKKGNPSGQFSTTVDNNMINVWLTTFEVSYLFFKQRGRLPTEKELQENCSMI 1497 Query 357 VYGDDRLSTTPSVPDNYE-ERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLE 415 YGDDRL + YE + VI MY++IFGMWVK + +D+ GLSFCG T+ ++ Sbjct 1498 CYGDDRLLSIRKGFVEYEPDTVIDMYKNIFGMWVKRNNIKIQDTPEGLSFCGLTIVKSST 1557 Query 416 ----PVPTSPEKLMASLLKPYKILPDLESLHGKLLCYQLLA 452 VP + K++++L P + LPD+ESL GKL+ ++L Sbjct 1558 GAYVGVP-NVNKILSTLENPVRRLPDVESLWGKLVSLRILC 1597 >RecName: Full=Non-structural polyprotein 1AB; Contains: RecName: Full=VPg; Contains: RecName: Full=Protein p19; Contains: RecName: Full=Transmembrane protein 1A; Contains: RecName: Full=Serine protease p27; Short=p27; Contains: RecName: Full=Protein p20; Contains: RecName: Full=RNA-directed RNA polymerase p57; Short=p57 [Turkey astrovirus 1] Sequence ID: Q9JH69.3 Length: 1611 Range 1: 1122 to 1595 Score:329 bits(844), Expect:6e-99, Method:Compositional matrix adjust., Identities:193/483(40%), Positives:282/483(58%), Gaps:21/483(4%) Query 11 WKSLLEPPRERRCVPANFPLLGHLPINRPIFDDKKPRDDLLGLLPEPTWHAFEEYGPTTW 70 W+ L+P R VP N +LG++P++R + D LL L+ EP W E YGP W Sbjct 1122 WRFDLQPIRHHVAVPMNVEVLGYIPVDRLVERRNVITDPLLKLV-EP-WRQ-ETYGPAVW 1178 Query 71 GPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHITATEKNTDST 130 +A+ K F+KFFY+EP++F + AD +E Y+ ++++ IT+TEKN DST Sbjct 1179 TIKAYNKMFEKFFYSEPLEFAQLDSSILNLADSYCLQEHDYMSGSQIVPITSTEKNLDST 1238 Query 131 PAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWYLFLkkeiikeekiRNSDI 190 P YPK F TE +YL GW Y + +V +KP LW+ FLK E++K KI DI Sbjct 1239 PGYPKFKVFSTEREYLSTCGWDEY-KTVWQVGPREKP--LWWCFLKTEVLKLAKIEQDDI 1295 Query 191 RQIVCADPIYTRIGACLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVNKGNKHF 250 R I+C DP++TRIGA E HQN+LMK T+ Q GWSP GG + RL + ++++ Sbjct 1296 RMILCTDPVFTRIGAAFEQHQNSLMKLETENHHAQVGWSPFFGGIHRRATRLYGE-HRYY 1354 Query 251 IEFDWTRYDGTIPPALFKHIKEIRWNFIN-KDQREKYRHVHEWYVDNLLNRHVLLPSGEV 309 +E DWTR+DGTIPP LF+ IK +R+ ++ K + + R + WYV+NL+++ VLLP+GEV Sbjct 1355 VELDWTRFDGTIPPELFRRIKLMRFFLLDPKYKTPENRDRYNWYVENLIDKVVLLPTGEV 1414 Query 310 TLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDK-------DLWKTYDTVVYGDDR 362 GNPSGQFST +DNN VN WL FE AY + ++ K D + YGDDR Sbjct 1415 CKIYGGNPSGQFSTTVDNNFVNVWLTVFELAYLFYKEHNRLPTICEIKKHTDWICYGDDR 1474 Query 363 -LSTTPSVPDNYE-ERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTS 420 L+ ++Y+ VI MY+D+FGMWVKP + S+ G+SFCG + Sbjct 1475 LLAVDKRFINSYDTAAVIAMYKDVFGMWVKPDNIKVFPSLEGVSFCGMVWTKRKGQYVGK 1534 Query 421 P--EKLMASLLKPYKILPDLESLHGKLLCYQLLAAFMAEDHPFKVYVEHCLSRTAKQLRD 478 P +K++++L P LPD++SL GKL+ +LL E Y++ + ++ ++ Sbjct 1535 PNVDKILSTLSDPVSRLPDIQSLWGKLVSLRLLCE--NESDEVVDYLDKQIESVSRHAKE 1592 Query 479 SGL 481 +G+ Sbjct 1593 AGI 1595 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Triticum mosaic virus United States/U06-123/2006] Sequence ID: A4KZ49.3 Length: 3112 Range 1: 2556 to 2680 Score:53.9 bits(128), Expect:3e-06, Method:Compositional matrix adjust., Identities:41/142(29%), Positives:66/142(46%), Gaps:17/142(11%) Query 226 CGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREK 285 CGW + F + FI+ D +RYD ++ P LF + IR +F+ + E+ Sbjct 2556 CGWDELARRFNPDWK---------FIDADGSRYDSSLTPLLFNAVLRIRQHFLRANGFER 2606 Query 286 YRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGP 345 R + +Y L+ + +G++ + +G PSGQ ST +DN M+ + A E+A Sbjct 2607 -RMLSNFYT-QLVWTPISTITGQIVKKNKGGPSGQPSTVVDNTMM--LMIAVEYAKLQYG 2662 Query 346 DKDLWKTYDTVVYGDDRLSTTP 367 DL V GDD + P Sbjct 2663 VTDL----KYVCNGDDLILNAP 2680 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Sweet potato mild mottle virus isolate Salazar] Sequence ID: P89201.1 Length: 3456 Range 1: 2869 to 3020 Score:53.9 bits(128), Expect:3e-06, Method:Compositional matrix adjust., Identities:46/165(28%), Positives:75/165(45%), Gaps:19/165(11%) Query 228 WSPMEGGFKKTMQRLVNKGNKH--FIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREK 285 W+ F + +L N N FI+ D +R+D +IPP +F + +R F + D E Sbjct 2869 WTVGINKFNRGWNKLANYFNHDWVFIDCDGSRFDSSIPPIMFNAVCMLRSVFGDLDPDEN 2928 Query 286 YRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFA----Y 341 + + Y + ++N +L G + + RGN SGQ ST +DN ++ + A E+A + Sbjct 2929 -QTLSNLYTE-IVNTPILTIEGNIIRKFRGNNSGQPSTVVDNTLI--LMIAMEYAIAKVF 2984 Query 342 FNGPDKDLWKTYDTVVYGDDRLSTTPSVPDNYEERVITMYRDIFG 386 PD V GDD L P N + ++D+F Sbjct 2985 VTRPD------IKYVCNGDDLLINCPRSTAN---AISEHFKDVFA 3020 >RecName: Full=Genome polyprotein 1; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Coat protein; Short=CP [Barley mild mosaic virus (strain Na1)] Sequence ID: P90245.1 Length: 2258 Range 1: 1751 to 1864 Score:52.4 bits(124), Expect:9e-06, Method:Compositional matrix adjust., Identities:36/120(30%), Positives:63/120(52%), Gaps:11/120(9%) Query 254 DWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQT 313 D +R+D +I LF IK+IR +F++ + ++ ++E ++N + L +G V + Sbjct 1751 DGSRFDSSIDGFLFDVIKDIRKHFMDAEHHKQLDTIYE----EIVNTKICLANGLVIQKN 1806 Query 314 RGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDT----VVYGDD-RLSTTPS 368 GN SGQ ST +DN + + +F +AY D ++ D V GDD + + +PS Sbjct 1807 CGNNSGQPSTVVDNTLA--LMTSFLYAYARLTGDDTFELMDENFVFVCNGDDNKFAMSPS 1864 >RecName: Full=Genome polyprotein 1; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Coat protein; Short=CP [Barley yellow mosaic virus (German isolate)] Sequence ID: Q04574.1 Length: 2412 Range 1: 1864 to 1982 Score:52.0 bits(123), Expect:1e-05, Method:Compositional matrix adjust., Identities:36/125(29%), Positives:65/125(52%), Gaps:11/125(8%) Query 254 DWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQT 313 D +R+D +I P F +K IR +F+ + + ++ D +LN + L +G V + Sbjct 1864 DGSRFDSSIDPFFFDVVKTIRKHFLPSEHHKAIDLIY----DEILNTTICLANGMVIRKN 1919 Query 314 RGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGP-DKDLWKTYDTVVY---GDD-RLSTTPS 368 GN SGQ ST +DN +V + AF +AY + D++L + ++ GDD + + +P Sbjct 1920 VGNNSGQPSTVVDNTLV--LMTAFLYAYIHKTGDRELALLNERFIFVCNGDDNKFAISPQ 1977 Query 369 VPDNY 373 + + Sbjct 1978 FDEEF 1982 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 11 (strain Gregory)] Sequence ID: P29813.4 Length: 2195 Range 1: 1961 to 2069 Score:50.8 bits(120), Expect:2e-05, Method:Compositional matrix adjust., Identities:34/120(28%), Positives:55/120(45%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1961 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2013 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 + G PSG T M N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2014 Y-FERGGMPSGYSGTSMFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2069 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A9 (strain Griggs)] Sequence ID: P21404.4 Length: 2201 Range 1: 1965 to 2075 Score:50.8 bits(120), Expect:2e-05, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:57/122(46%), Gaps:12/122(9%) Query 247 NKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPS 306 N H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1965 NGHLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYSHKETNYIDYLCNSHHLYRD 2017 Query 307 GEVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLST 365 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ Sbjct 2018 KHYFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIAS 2073 Query 366 TP 367 P Sbjct 2074 YP 2075 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Blackberry virus Y USA/C3ARK] Sequence ID: A0AUJ5.1 Length: 3491 Range 1: 2856 to 2963 Score:50.1 bits(118), Expect:5e-05, Method:Compositional matrix adjust., Identities:29/112(26%), Positives:54/112(48%), Gaps:6/112(5%) Query 254 DWTRYDGTIPPALFKHIKEIRWNFINKDQ--REKYRHVHEWYVDNLLNRHVLLPSGEVTL 311 D +++D ++ P L + IR F+ D+ + R ++ + L++ +P G V Sbjct 2856 DGSQFDSSLTPLLINEVCRIRMYFMQDDELGQAMLRGLYRQIIWTLIS----MPDGSVVR 2911 Query 312 QTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRL 363 + +GNPSGQ ST DN ++ + FAY +++ + GDD + Sbjct 2912 KAKGNPSGQPSTVDDNTIMVMLAVEYVFAYLGITQEEMDTIFKYYANGDDLI 2963 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 5 (strain Noyce)] Sequence ID: Q9YLJ1.3 Length: 2196 Range 1: 1962 to 2070 Score:49.3 bits(116), Expect:7e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1962 HLIAFDYSGYDASLSPVWFACLKMLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2014 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2015 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2070 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B3 (strain Nancy)] Sequence ID: P03313.4 Length: 2185 Range 1: 1951 to 2059 Score:49.3 bits(116), Expect:7e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1951 HLIAFDYSGYDASLSPVWFACLKMLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2003 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2004 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2059 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 9 strain Hill] Sequence ID: Q66849.3 Length: 2193 Range 1: 1959 to 2067 Score:49.3 bits(116), Expect:7e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1959 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYSHKETNYIDYLCNSHHLYRDKH 2011 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2012 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2067 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B4 (strain JVB / Benschoten / New York/51)] Sequence ID: P08292.4 Length: 2183 Range 1: 1949 to 2057 Score:49.3 bits(116), Expect:8e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1949 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2001 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2002 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2057 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B3 (strain Woodruff)] Sequence ID: Q66282.3 Length: 2185 Range 1: 1951 to 2059 Score:49.3 bits(116), Expect:8e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1951 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYSHKETNYIDYLCNSHHLYRDKH 2003 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2004 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2059 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 30 (strain Bastianni)] Sequence ID: Q9WN78.3 Length: 2194 Range 1: 1960 to 2068 Score:48.9 bits(115), Expect:9e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1960 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYSHKETNYIDYLCNSHHLYRDKH 2012 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2013 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2068 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B2 (strain Ohio-1)] Sequence ID: Q9YLG5.3 Length: 2187 Range 1: 1953 to 2061 Score:48.9 bits(115), Expect:9e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1953 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2005 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2006 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2061 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B5 (strain Peterborough / 1954/UK/85)] Sequence ID: Q03053.3 Length: 2185 Range 1: 1951 to 2059 Score:48.9 bits(115), Expect:9e-05, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1951 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2003 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2004 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2059 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B6 (strain Schmitt)] Sequence ID: Q9QL88.4 Length: 2184 Range 1: 1950 to 2058 Score:48.9 bits(115), Expect:1e-04, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1950 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2002 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2003 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2058 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 6 strain Charles] Sequence ID: Q66474.3 Length: 2191 Range 1: 1957 to 2065 Score:48.9 bits(115), Expect:1e-04, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1957 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHKETNYIDYLCNSHHLYRDKH 2009 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2010 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2065 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 12 (strain Travis)] Sequence ID: Q66575.4 Length: 2193 Range 1: 1959 to 2067 Score:48.9 bits(115), Expect:1e-04, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1959 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYTHRETNYIDYLCNSHHLYRDKH 2011 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2012 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2067 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=P2; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B1 (strain Japan)] Sequence ID: P08291.3 Length: 2182 Range 1: 1948 to 2056 Score:48.5 bits(114), Expect:1e-04, Method:Compositional matrix adjust., Identities:32/120(27%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H + FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1948 HLVAFDYSGYDASLSPVWFACLKLLL-------EKLGYSHKETNYIDYLCNSHHLYRDKH 2000 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2001 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2056 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B4 (strain E2)] Sequence ID: Q86887.3 Length: 2183 Range 1: 1949 to 2057 Score:48.1 bits(113), Expect:2e-04, Method:Compositional matrix adjust., Identities:33/120(28%), Positives:56/120(46%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H FD++ YD ++ P F +K + ++ Y H Y+D L N H L Sbjct 1949 HLRAFDYSGYDASLSPVWFACLKLLL-------EKLGYSHKETNYIDYLCNSHHLYRDKH 2001 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ F + G D D ++ + YGDD +++ P Sbjct 2002 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMFKVYKGIDLDQFR---MIAYGDDVIASYP 2057 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Swine vesicular disease virus (STRAIN UKG/27/72)] Sequence ID: P13900.3 Length: 2185 Range 1: 1951 to 2059 Score:47.0 bits(110), Expect:4e-04, Method:Compositional matrix adjust., Identities:33/122(27%), Positives:57/122(46%), Gaps:16/122(13%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEI--RWNFINKDQREKYRHVHEWYVDNLLNRHVLLPS 306 H I FD++ YD ++ P F +K + + + NK+ Y+D L N H L Sbjct 1951 HLIAFDYSGYDASLSPVWFTCLKLLLEKLGYTNKETN---------YIDYLCNSHHLYRD 2001 Query 307 GEVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLST 365 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ Sbjct 2002 KHYFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIAS 2057 Query 366 TP 367 P Sbjct 2058 YP 2059 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain California)] Sequence ID: P18479.2 Length: 3080 Range 1: 2342 to 2606 Score:46.6 bits(109), Expect:5e-04, Method:Compositional matrix adjust., Identities:74/287(26%), Positives:125/287(43%), Gaps:42/287(14%) Query 64 EYGPTTWGPQAFVKSFDKFFYAEPIDFFS-EYPQLCAFADWAT-------YREFRYLEDT 115 EY P+ +AF K F F Y +P+ ++ + D + E R++ D Sbjct 2342 EYQPSKLNKEAFKKDF--FKYNKPVTVNQLDHDKFLGAVDGVIRMMCDFEFNECRFITDP 2399 Query 116 RVIHITATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIRE------FTRVFKGDKPEV 169 I+ N+ + A Y +++Y E G + RE R+F G K Sbjct 2400 EEIY------NSLNMKAAIGAQYRGKKKEYFE--GLDDFDRERLLFQSCERLFNGYKG-- 2449 Query 170 LWYLFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDTSVGQCG 227 LW LK E+ EK+R + R A PI T +GA C++ N +++ +C Sbjct 2450 LWNGSLKAELRPLEKVRANKTRTFTAA-PIDTLLGAKVCVDDFNNEFYRKNL-----KCP 2503 Query 228 WS----PMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQR 283 W+ GG+ K M+ L + + D +++D ++ PAL + IR +F +D Sbjct 2504 WTVGMTKFYGGWDKLMRSLPD--GWLYCHADGSQFDSSLTPALLNAVLIIR-SFYMEDWW 2560 Query 284 EKYRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMV 330 + Y + ++ +L P G + + RGN SGQ ST +DN ++ Sbjct 2561 VGQEMLENLYAE-IVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2606 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 1 (strain Farouk / ATCC VR-1038)] Sequence ID: O91734.4 Length: 2184 Range 1: 1950 to 2058 Score:46.6 bits(109), Expect:5e-04, Method:Compositional matrix adjust., Identities:33/122(27%), Positives:57/122(46%), Gaps:16/122(13%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEI--RWNFINKDQREKYRHVHEWYVDNLLNRHVLLPS 306 H I FD++ YD ++ P F +K + + + NK+ Y+D L N H L Sbjct 1950 HLIAFDYSGYDASLSPVWFACLKLLLEKLGYTNKETN---------YIDYLCNSHHLYRD 2000 Query 307 GEVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLST 365 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ Sbjct 2001 KHYFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIAS 2056 Query 366 TP 367 P Sbjct 2057 YP 2058 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Swine vesicular disease virus (STRAIN H/3 '76)] Sequence ID: P16604.3 Length: 2185 Range 1: 1951 to 2059 Score:46.6 bits(109), Expect:5e-04, Method:Compositional matrix adjust., Identities:33/122(27%), Positives:57/122(46%), Gaps:16/122(13%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEI--RWNFINKDQREKYRHVHEWYVDNLLNRHVLLPS 306 H I FD++ YD ++ P F +K + + + NK+ Y+D L N H L Sbjct 1951 HLIAFDYSGYDASLSPVWFTCLKLLLEKLGYTNKETN---------YIDYLCNSHHLYRD 2001 Query 307 GEVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLST 365 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ Sbjct 2002 KHYFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIAS 2057 Query 366 TP 367 P Sbjct 2058 YP 2059 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 9 strain Barty] Sequence ID: Q66577.3 Length: 2203 Range 1: 1969 to 2077 Score:45.8 bits(107), Expect:8e-04, Method:Compositional matrix adjust., Identities:32/120(27%), Positives:55/120(45%), Gaps:12/120(10%) Query 249 HFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGE 308 H I FD++ YD ++ P F +K + ++ Y Y+D L N H L Sbjct 1969 HLIAFDYSGYDASLSPVWFACLKLLL-------EKLGYSSKETNYIDYLCNSHHLYRDKH 2021 Query 309 VTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 ++ G PSG T + N+M+ N ++ + G D D ++ + YGDD +++ P Sbjct 2022 YFVRG-GMPSGCSGTSIFNSMINNIIIRTLMLKVYKGIDLDQFR---MIAYGDDVIASYP 2077 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 3133 to 3305 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:48/189(25%), Positives:78/189(41%), Gaps:37/189(19%) Query 225 QCGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQRE 284 Q G +P + + L+ K F D++++DG PA++ I + Sbjct 3133 QVGINPESMEWSDLINSLLRVNTKGFAG-DYSKFDGIGSPAIYHSIVNV----------- 3180 Query 285 KYRHVHEWYVDNLLN---RHVLLPS--------GEVTLQ-TRGNPSGQFSTPMDNNMVNF 332 V+ WY D +N RH L+ S G++ L+ ++G PSG T + N+ VN+ Sbjct 3181 ----VNAWYNDGEVNARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNY 3236 Query 333 WLQAFEFAYFNGPD----KDLWKTYDT----VVYGDDR-LSTTPSVPDNYEERVITMYRD 383 + A + G + K +DT V YGDD +S D Y + + Y Sbjct 3237 YFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLS 3296 Query 384 IFGMWVKPG 392 FG+ G Sbjct 3297 HFGVTYTDG 3305 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Pepper mottle virus (California isolate)] Sequence ID: Q01500.1 Length: 3068 Range 1: 2467 to 2696 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:49/237(21%), Positives:102/237(43%), Gaps:9/237(3%) Query 196 ADPIYTRIGA--CLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRLVNKGNKHFIEF 253 A PI T +G C++ N ++ + G + GG+ K + L + + Sbjct 2467 AAPIDTLLGGKVCVDDLNNQFYSKNIEC-CWTVGMTKFYGGWDKLLTAL--PAGWIYCDA 2523 Query 254 DWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQT 313 D +++D ++ P L + IR+ F+ +D Y+ + Y + ++ + P G + + Sbjct 2524 DGSQFDSSLTPYLINAVLTIRYAFM-EDWDIGYKMLQNLYTE-IIYTPISTPDGTIVKKF 2581 Query 314 RGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTPSVPDNY 373 RGN SGQ ST +DN+++ + F +++ V GDD L ++ Sbjct 2582 RGNNSGQPSTVVDNSLMVVLAMHYAFVREGIAFEEIDSICKFFVNGDDLLIAVNPERESL 2641 Query 374 EERVITMYRDIFGMWVKPGKVICRDSIVGLSFCGFTVNENLEPVPTSPEKLMASLLK 430 + + + D+ + + + + +S CG +V +P E+ + S+L+ Sbjct 2642 LDTLSNHFSDLGLNYDFSSRTRNKSELWFMSHCGISVEGTY--IPKLEEERIVSILQ 2696 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 3130 to 3302 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:48/189(25%), Positives:78/189(41%), Gaps:37/189(19%) Query 225 QCGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQRE 284 Q G +P + + L+ K F D++++DG PA++ I + Sbjct 3130 QVGINPESMEWSDLINSLLRVNTKGFAG-DYSKFDGIGSPAIYHSIVNV----------- 3177 Query 285 KYRHVHEWYVDNLLN---RHVLLPS--------GEVTLQ-TRGNPSGQFSTPMDNNMVNF 332 V+ WY D +N RH L+ S G++ L+ ++G PSG T + N+ VN+ Sbjct 3178 ----VNAWYDDGEVNARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNY 3233 Query 333 WLQAFEFAYFNGPD----KDLWKTYDT----VVYGDDR-LSTTPSVPDNYEERVITMYRD 383 + A + G + K +DT V YGDD +S D Y + + Y Sbjct 3234 YFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLS 3293 Query 384 IFGMWVKPG 392 FG+ G Sbjct 3294 HFGVTYTDG 3302 >RecName: Full=Replication polyprotein; Includes: RecName: Full=Membrane protein; Includes: RecName: Full=Helicase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase [Nora virus] Sequence ID: Q27YG9.2 Length: 2104 Range 1: 1828 to 1984 Score:45.1 bits(105), Expect:0.002, Method:Compositional matrix adjust., Identities:44/165(27%), Positives:79/165(47%), Gaps:20/165(12%) Query 240 QRLVNKGNKH--FIEFDWTRYDGTIPPALFKHIKEIRWNFINK---DQREKYRHVHEWYV 294 Q+L KH + + D+ YD + +FK +++I+ + I + D+ +K R V E Sbjct 1828 QQLATYMTKHPNYFDADYKNYDKYLHRQVFKAVRKIQRSVIQQVCPDKWDKARAVEEL-- 1885 Query 295 DNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLW---K 351 + ++ +V+ V RGN SG ++T +DN + N + + G + LW + Sbjct 1886 -DAIDTYVV-DYQTVYKTNRGNKSGSYTTTIDNCLANDIYGLYAWVKTTGL-RSLWDYRQ 1942 Query 352 TYDTVVYGDDRLSTTPSVPDNYEERV-ITMYRDIF---GMWVKPG 392 +V +GDD + SV D Y+++ YRD+ G + PG Sbjct 1943 NVSSVAFGDDIIK---SVSDEYKDKYNYCTYRDVLNATGHIMTPG 1984 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-A; Short=NIA; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-B; Short=NIB; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Brome streak virus (strain German)] Sequence ID: Q65729.1 Length: 942 Range 1: 351 to 461 Score:44.7 bits(104), Expect:0.002, Method:Compositional matrix adjust., Identities:36/119(30%), Positives:55/119(46%), Gaps:13/119(10%) Query 250 FIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNL----LNRHVLLP 305 FI+ D +++D +I P L + IR F+ +D + E + NL ++ +L Sbjct 351 FIDADGSQFDSSITPLLMNAVLTIRLYFMERDD------ITELMLRNLYTQIISTCMLAE 404 Query 306 SGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNG-PDKDLWKTYDTVVYGDDRL 363 G + + RGN SGQ ST +DN + + A E+A D L V GDD L Sbjct 405 DGLIVQKHRGNNSGQPSTVVDNTLC--LMIAMEYARQRAISDGHLNMQMRYVCNGDDLL 461 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Coat protein; Short=CP [Brome streak virus (strain 11-Cal)] Sequence ID: Q65730.1 Length: 3093 Range 1: 2518 to 2628 Score:45.1 bits(105), Expect:0.002, Method:Compositional matrix adjust., Identities:36/119(30%), Positives:55/119(46%), Gaps:13/119(10%) Query 250 FIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNL----LNRHVLLP 305 FI+ D +++D +I P L + IR F+ +D + E + NL ++ +L Sbjct 2518 FIDADGSQFDSSITPLLMNAVLTIRLYFMERDD------ITELMLRNLYTQIISTCMLAE 2571 Query 306 SGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNG-PDKDLWKTYDTVVYGDDRL 363 G + + RGN SGQ ST +DN + + A E+A D L V GDD L Sbjct 2572 DGLIVQKHRGNNSGQPSTVVDNTLC--LMIAMEYARQRAISDGHLNMQMRYVCNGDDLL 2628 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-A; Short=NIA; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-B; Short=NIB; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Ornithogalum mosaic virus] Sequence ID: P20234.1 Length: 1136 Range 1: 423 to 720 Score:43.1 bits(100), Expect:0.005, Method:Compositional matrix adjust., Identities:76/319(24%), Positives:128/319(40%), Gaps:40/319(12%) Query 64 EYGPTTWGPQAFVKSFDKFFYAEPIDFFSEYPQLCAFADWATYREFRYLEDTRVIHITAT 123 +YG + +AFVK K Y++PI + D+ + E Y R+ H Sbjct 423 QYGKSILSKEAFVKDIMK--YSKPI--------VLGEVDFIKFEE-GYNNVLRMFHDIGF 471 Query 124 EK---NTDSTPAYPKMN--------YFDTEEDYLEAHG----WAPYIREFTRVFKGDKPE 168 EK TDS Y +N Y ++ Y E I R++ G Sbjct 472 EKCEYVTDSMEVYKNLNLKAAVGAMYTGKKQQYFEGMSEDEIHQLVIASCFRLWSGKFG- 530 Query 169 VLWYLFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDT--SVG 224 +W LK E+ EK++ R A P+ T +GA C++ +H +VG Sbjct 531 -VWNGSLKAELRPLEKVQACKTRTFTAA-PLDTLLGAKVCVDDFNAQFYDKHLTAPWTVG 588 Query 225 QCGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQRE 284 C + G+ M +L + + D +++D ++ P L + +R F+ +D Sbjct 589 ICKYYK---GWDTFMNKLPE--GWLYCDADGSQFDSSLTPFLINSVLRLRLEFM-EDWDI 642 Query 285 KYRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNG 344 R + Y + ++ + P G V + RGN SGQ ST +DN ++ + A + Sbjct 643 GARMLSNLYTE-IIYTPIATPDGTVVKKFRGNNSGQPSTVVDNTLMVVLAMNYALAKLSI 701 Query 345 PDKDLWKTYDTVVYGDDRL 363 P +++ GDD L Sbjct 702 PYEEMDSRIRYFANGDDLL 720 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Potato virus Y strain Hungarian] Sequence ID: Q02963.1 Length: 3061 Range 1: 2331 to 2651 Score:43.5 bits(101), Expect:0.005, Method:Compositional matrix adjust., Identities:71/334(21%), Positives:142/334(42%), Gaps:24/334(7%) Query 62 FEEYGPTTWGPQAFVKSFDKFFYAEPID--------FFSEYPQLCAFADWATYREFRYLE 113 + YG + +A++K K Y++PID F ++ + +++ Y+ Sbjct 2331 MDAYGKSLLNREAYIKDIMK--YSKPIDVGIVDCDAFEEAINRVIIYLQVHGFQKCNYIT 2388 Query 114 DTRVIHITATEKN-TDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWY 172 D + I K + K +YF E + EA ++ R++KG +W Sbjct 2389 DEQEIFKALNMKAAVGAMYGGKKKDYF---EHFTEADKEEIVMQSCPRLYKGSLG--IWN 2443 Query 173 LFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDTSVGQCGWSP 230 LK E+ +EKI + R A P+ T +G C++ N ++ + G + Sbjct 2444 GSLKAELRCKEKILANKTRTFTAA-PLDTLLGGKVCVDDFNNQFYSKNIE-CCWTVGMTK 2501 Query 231 MEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVH 290 GG+ + ++RL N + + D +++D ++ P L + IR ++ +D + + Sbjct 2502 FYGGWDRLLRRLPE--NWVYCDADGSQFDSSLTPYLINAVLIIRSTYM-EDWDLGLQMLR 2558 Query 291 EWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLW 350 Y + ++ + P G + + RGN SGQ ST +DN+++ + +++ Sbjct 2559 NLYTE-IIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSLMVVLAMHYALIKECVEFEEID 2617 Query 351 KTYDTVVYGDDRLSTTPSVPDNYEERVITMYRDI 384 T V GDD L ++ +R+ + D+ Sbjct 2618 STCVFFVNGDDLLIAVNPEKESILDRMSQHFSDL 2651 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain Singapore)] Sequence ID: O36979.2 Length: 3083 Range 1: 2345 to 2609 Score:43.1 bits(100), Expect:0.006, Method:Compositional matrix adjust., Identities:73/287(25%), Positives:121/287(42%), Gaps:42/287(14%) Query 64 EYGPTTWGPQAFVKSFDKFFYAEPI--------DFFSEYPQLCAFADWATYREFRYLEDT 115 EY P+ +AF K F F Y +P+ F + + E R++ D Sbjct 2345 EYQPSKLNKEAFKKDF--FKYNKPVVVNQLDHDKFLGAVNGVIRMMCDFEFNECRFITDP 2402 Query 116 RVIHITATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIRE------FTRVFKGDKPEV 169 I+ + K A Y +++Y E G + RE R+F G K Sbjct 2403 EEIYDSLNMK------AAIGAQYRGKKKEYFE--GLDNFDRERLLFQSCERLFNGHKG-- 2452 Query 170 LWYLFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDTSVGQCG 227 LW LK E+ EK++ + R A PI T +GA C++ N ++ +C Sbjct 2453 LWNGSLKAELRPLEKVQANKTRTFTAA-PIDTLLGAKVCVDDFNNEFYSKNL-----KCP 2506 Query 228 WS----PMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQR 283 W+ GG+ K M+ L + + D +++D ++ PAL + IR +F +D Sbjct 2507 WTVGMTKFYGGWDKLMRELPD--GWLYCHADGSQFDSSLTPALLNAVLIIR-SFYMEDWW 2563 Query 284 EKYRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMV 330 + Y + ++ +L P G + + RGN SGQ ST +DN ++ Sbjct 2564 VGQEMLENLYAE-IVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2609 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Pea seed-borne mosaic virus (strain DPD1)] Sequence ID: P29152.1 Length: 3206 Range 1: 2639 to 2750 Score:42.7 bits(99), Expect:0.007, Method:Compositional matrix adjust., Identities:34/119(29%), Positives:58/119(48%), Gaps:12/119(10%) Query 250 FIEFDWTRYDGTIPPALFKHIKEIRWNFINK-DQREKYRHVHEWYVDNLLNRHVLLPSGE 308 + + D +R+D ++ P L + E+R F+ + D E+ + Y + ++ + P G Sbjct 2639 YCDADGSRFDSSLTPYLINAVLELRLRFMEEWDAGEQM--LKNLYTE-IIYTPIATPDGS 2695 Query 309 VTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTYDTVVY----GDDRL 363 V +T+GN SGQ ST +DN ++ + G D ++T D VV GDD L Sbjct 2696 VIKKTKGNNSGQPSTVVDNTLMVILAMQYSLQLL-GVD---FETQDEVVRYFANGDDLL 2750 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Ryegrass mosaic virus isolate Danish] Sequence ID: O11436.1 Length: 3086 Range 1: 2253 to 2604 Score:42.7 bits(99), Expect:0.008, Method:Compositional matrix adjust., Identities:85/379(22%), Positives:145/379(38%), Gaps:60/379(15%) Query 26 ANFPLLGHLP---INRPIFDDKKPRDDLLGLLPEPTWHAFE----EYGPTTWGPQAFVKS 78 AN ++G P I + + K P DL + F+ +Y P+ +AFVK Sbjct 2253 ANLLVIGKCPGNLITKHVIKGKSPTFDLFLSVDAQASDFFKPLMGDYAPSRLNREAFVKD 2312 Query 79 FDKFFYAEPIDFFSEYPQLCAFADWATYREFRY--LEDTRVIHITATEKNTDSTPAYPKM 136 K+ PI S D+ E Y L+D+ I TD+ P + M Sbjct 2313 ITKYDTEIPIGNLS-------ITDFENAVEDTYYILKDS---GIEQCNYITDAIPIFDSM 2362 Query 137 N--------YFDTEEDYLEAHG---WAPYIRE-FTRVFKGDKPEVLWYLFLkkeiikeek 184 N Y ++DY E + ++E + R+ +G +W LK E+ +EK Sbjct 2363 NMKAATGALYGGKKKDYFENYTDDMKQNILKESYIRLREGKMG--IWNGSLKAELRSKEK 2420 Query 185 iRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDTSVGQCGWSPMEGGFKKTMQRL 242 + + R + A P+ T + C++ N H ++G + + + Sbjct 2421 VEANKTR-VFTAAPLDTLLAGKGCVDDFNNQFYAAH------------LKGPWTVGITKF 2467 Query 243 VNKGNKHFIEF---------DWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWY 293 + N E D +R+D ++ P L + IR F+ + R + Y Sbjct 2468 FGRWNDFLSELPPGWDYFDADGSRFDSSLTPFLLNAVLNIRKKFM-INWAFGQRCLGNLY 2526 Query 294 VDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLWKTY 353 + ++ + P G V + RGN SGQ ST +DN ++ + + P L Sbjct 2527 TE-IIYTPIATPDGSVVKKMRGNNSGQPSTVVDNTIMVIIAMQYAISKAEFPAGRLRDQI 2585 Query 354 DTVVYGDDR-LSTTPSVPD 371 GDD ++ PS+ D Sbjct 2586 RYFANGDDLVVAVEPSLSD 2604 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Zucchini yellow mosaic virus (strain Reunion Island)] Sequence ID: Q89330.1 Length: 3083 Range 1: 2345 to 2609 Score:42.7 bits(99), Expect:0.009, Method:Compositional matrix adjust., Identities:76/289(26%), Positives:122/289(42%), Gaps:46/289(15%) Query 64 EYGPTTWGPQAFVKSFDKFFYAEPI-------DFFSE-----YPQLCAFADWATYREFRY 111 EY P+ +AF K F F Y +P+ D F E +C F + E R+ Sbjct 2345 EYQPSKLNKEAFKKDF--FKYNKPVIVNQLDHDKFLEAVDGVIRMMCDFE----FNECRF 2398 Query 112 LEDTRVIHITATEKNTDSTPAYPKMNYFDTEEDYLEAHGWAPYIREF----TRVFKGDKP 167 + D I+ + K A Y +++Y E R R+F G K Sbjct 2399 ITDPEEIYSSLNMK------AAIGAQYRGKKKEYFEGLDNFDMERLLFQSCERLFNGYKG 2452 Query 168 EVLWYLFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDTSVGQ 225 LW LK E+ EK++ + R A PI T +GA C++ N ++ + Sbjct 2453 --LWNGSLKAELRPLEKVQANKTRTFTAA-PIDTLLGAKVCVDDFNNEFYSKNL-----K 2504 Query 226 CGW----SPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKD 281 C W S GG+ K M+ L + + D +++D ++ PAL + IR +F +D Sbjct 2505 CPWTVGMSKFYGGWDKLMRALPD--GWLYCHADGSQFDSSLTPALLNAVLIIR-SFYMED 2561 Query 282 QREKYRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMV 330 + Y + ++ +L P G + + RGN SGQ ST +DN ++ Sbjct 2562 WWVGQEMLENLYAE-IVYTPILAPDGTIFKKFRGNNSGQPSTVVDNTLM 2609 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Peanut mottle virus (strain M)] Sequence ID: O56075.1 Length: 3099 Range 1: 2525 to 2656 Score:41.6 bits(96), Expect:0.016, Method:Compositional matrix adjust., Identities:32/145(22%), Positives:61/145(42%), Gaps:22/145(15%) Query 226 CGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREK 285 G + GG+ K M++L + + D +++D ++ P L + +R F+ Sbjct 2525 VGMTKFYGGWDKLMRKLPD--GWRYCHADGSQFDSSLTPFLLNAVLAVRLMFM------- 2575 Query 286 YRHVHEWYVDNLLNRH---------VLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQA 336 +W+V + R+ +L P G + + +GN SGQ ST +DN ++ Sbjct 2576 ----EDWWVGEQMLRNFYTEIIYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLMVMIAMF 2631 Query 337 FEFAYFNGPDKDLWKTYDTVVYGDD 361 + N D+ + + GDD Sbjct 2632 YGMKKLNWTDEQIKERIVFFAXGDD 2656 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 2 strain Lansing] Sequence ID: P06210.3 Length: 2207 Range 1: 1978 to 2081 Score:41.6 bits(96), Expect:0.016, Method:Compositional matrix adjust., Identities:32/116(28%), Positives:55/116(47%), Gaps:13/116(11%) Query 253 FDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQ 312 FD+T YD ++ PA F+ +K + D+ + Y+D L + H L + ++ Sbjct 1978 FDYTGYDASLSPAWFEALKMVLEKIGFGDRVD--------YIDYLNHSHHLYKNKTYCVK 2029 Query 313 TRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 G PSG T + N+M+ N ++ + G D D K + YGDD +++ P Sbjct 2030 G-GMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK---MIAYGDDVIASYP 2081 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 2 strain W-2] Sequence ID: P23069.3 Length: 2205 Range 1: 1976 to 2079 Score:41.6 bits(96), Expect:0.017, Method:Compositional matrix adjust., Identities:32/116(28%), Positives:55/116(47%), Gaps:13/116(11%) Query 253 FDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQ 312 FD+T YD ++ PA F+ +K + D+ + Y+D L + H L + ++ Sbjct 1976 FDYTGYDASLSPAWFEALKMVLEKIGFGDRVD--------YIDYLNHSHHLYKNKTYCVK 2027 Query 313 TRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 G PSG T + N+M+ N ++ + G D D K + YGDD +++ P Sbjct 2028 G-GMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK---MIAYGDDVIASYP 2079 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 3 (strain 23127)] Sequence ID: P06209.3 Length: 2206 Range 1: 1972 to 2080 Score:41.6 bits(96), Expect:0.018, Method:Compositional matrix adjust., Identities:32/121(26%), Positives:56/121(46%), Gaps:13/121(10%) Query 248 KHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSG 307 + FD+T YD ++ PA F+ +K + D+ + Y+D L + H L + Sbjct 1972 EKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVD--------YIDYLNHSHHLYKNK 2023 Query 308 EVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTT 366 ++ G PSG T + N+M+ N ++ + G D D K + YGDD +++ Sbjct 2024 TYCVKG-GMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK---MIAYGDDVIASY 2079 Query 367 P 367 P Sbjct 2080 P 2080 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)] Sequence ID: P03302.3 Length: 2206 Range 1: 1972 to 2080 Score:41.6 bits(96), Expect:0.019, Method:Compositional matrix adjust., Identities:32/121(26%), Positives:56/121(46%), Gaps:13/121(10%) Query 248 KHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSG 307 + FD+T YD ++ PA F+ +K + D+ + Y+D L + H L + Sbjct 1972 EKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVD--------YIDYLNHSHHLYKN- 2022 Query 308 EVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTT 366 ++ G PSG T + N+M+ N ++ + G D D K + YGDD +++ Sbjct 2023 KIYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK---MIAYGDDVIASY 2079 Query 367 P 367 P Sbjct 2080 P 2080 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 Mahoney] Sequence ID: P03300.3 Length: 2209 Range 1: 1975 to 2083 Score:41.6 bits(96), Expect:0.019, Method:Compositional matrix adjust., Identities:32/121(26%), Positives:56/121(46%), Gaps:13/121(10%) Query 248 KHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSG 307 + FD+T YD ++ PA F+ +K + D+ + Y+D L + H L + Sbjct 1975 EKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVD--------YIDYLNHSHHLYKNK 2026 Query 308 EVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTT 366 ++ G PSG T + N+M+ N ++ + G D D K + YGDD +++ Sbjct 2027 TYCVKG-GMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK---MIAYGDDVIASY 2082 Query 367 P 367 P Sbjct 2083 P 2083 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A24 EH24/70] Sequence ID: P36290.3 Length: 2214 Range 1: 1980 to 2088 Score:41.6 bits(96), Expect:0.019, Method:Compositional matrix adjust., Identities:32/121(26%), Positives:56/121(46%), Gaps:13/121(10%) Query 248 KHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSG 307 + FD+T YD ++ PA F+ +K + D+ + Y+D L + H L + Sbjct 1980 EKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVD--------YIDYLNHSHHLYKNK 2031 Query 308 EVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTT 366 ++ G PSG T + N+M+ N ++ + G D D K + YGDD +++ Sbjct 2032 TYCVKG-GMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK---MIAYGDDVIASY 2087 Query 367 P 367 P Sbjct 2088 P 2088 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A21 Coe] Sequence ID: P22055.3 Length: 2206 Range 1: 1972 to 2080 Score:41.2 bits(95), Expect:0.026, Method:Compositional matrix adjust., Identities:33/123(27%), Positives:57/123(46%), Gaps:17/123(13%) Query 248 KHFIEFDWTRYDGTIPPALFKHIKEI--RWNFINKDQREKYRHVHEWYVDNLLNRHVLLP 305 + FD+T YD ++ PA F+ +K + + F N+ Y+D L + H L Sbjct 1972 EKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGNRVD----------YIDYLNHSHHLYK 2021 Query 306 SGEVTLQTRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLS 364 + ++ G PSG T + N+M+ N ++ + G D D K + YGDD ++ Sbjct 2022 NKTYCVKG-GMPSGCSGTSIFNSMINNLIIRTLLLRTYKGIDLDHLK---MIAYGDDVIA 2077 Query 365 TTP 367 + P Sbjct 2078 SYP 2080 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Enterovirus D68] Sequence ID: Q68T42.1 Length: 2188 Range 1: 1959 to 2062 Score:40.8 bits(94), Expect:0.034, Method:Compositional matrix adjust., Identities:30/116(26%), Positives:50/116(43%), Gaps:13/116(11%) Query 253 FDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVHEWYVDNLLNRHVLLPSGEVTLQ 312 FD+T YD ++ P F +K++ K + H+ + L V L + Sbjct 1959 FDYTGYDASLSPVWFACLKKVLI---------KLGYTHQTSFIDYLCHSVHLYKDRKYVI 2009 Query 313 TRGNPSGQFSTPMDNNMV-NFWLQAFEFAYFNGPDKDLWKTYDTVVYGDDRLSTTP 367 G PSG T + N M+ N ++ + G D D +K + YGDD +++ P Sbjct 2010 NGGMPSGSSGTSIFNTMINNIIIRTLLIKVYKGIDLDQFK---MIAYGDDVIASYP 2062 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Potato virus Y strain N] Sequence ID: P18247.2 Length: 3063 Range 1: 2333 to 2653 Score:40.8 bits(94), Expect:0.035, Method:Compositional matrix adjust., Identities:72/334(22%), Positives:142/334(42%), Gaps:24/334(7%) Query 62 FEEYGPTTWGPQAFVKSFDKFFYAEPID------FFSEYPQ--LCAFADWATYREFRYLE 113 + YG + A++K K Y++PID P L + + +++ Y+ Sbjct 2333 MDAYGKSLLNRDAYIKDIMK--YSKPIDVGVVDRMHLRKPSIGLSSTCNVHGFKKCAYVT 2390 Query 114 DTRVIHITATEKN-TDSTPAYPKMNYFDTEEDYLEAHGWAPYIREFTRVFKGDKPEVLWY 172 D + I K ++ K +YF E + +A ++ R++KG +W Sbjct 2391 DEQEIFKALNMKAAVGASYGCKKKDYF---EHFTDADKEEIVMQSCLRLYKGLLG--IWN 2445 Query 173 LFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDTSVGQCGWSP 230 LK E+ +EKI + R A P+ T +G C++ N ++ + G + Sbjct 2446 GSLKAELRCKEKILANKTRTFTAA-PLDTLLGGKVCVDDFNNQFYSKNIEC-CWTVGMTK 2503 Query 231 MEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREKYRHVH 290 GG+ K ++RL N + + D +++D ++ P L + IR ++ +D + + Sbjct 2504 FYGGWDKLLRRLPE--NWVYCDADGSQFDSSLTPYLINAVLTIRSTYM-EDWDVGLQMLR 2560 Query 291 EWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMVNFWLQAFEFAYFNGPDKDLW 350 Y + ++ + P G + + RGN SGQ ST +DN+++ + +++ Sbjct 2561 NLYTE-IVYTPISTPDGTIVKKFRGNNSGQPSTVVDNSLMVVLAMHYALIKECVEFEEID 2619 Query 351 KTYDTVVYGDDRLSTTPSVPDNYEERVITMYRDI 384 T V GDD L ++ +R+ + D+ Sbjct 2620 STCVFFVNGDDLLIAVNPEKESILDRMSQHFSDL 2653 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein [Beet mosaic virus] Sequence ID: Q6XW15.1 Length: 3085 Range 1: 2351 to 2615 Score:40.8 bits(94), Expect:0.035, Method:Compositional matrix adjust., Identities:70/285(25%), Positives:120/285(42%), Gaps:38/285(13%) Query 64 EYGPTTWGPQAFVKSFDKFFYAEPI--------DFFSEYPQLCAFADWATYREFRYLEDT 115 EYGP+ +AF+K F K YA PI F + + Y E Y+ D Sbjct 2351 EYGPSRLNKEAFLKDFLK--YAGPITVGVVNTNSFEDAVASVINMLEDLDYGECAYVTDP 2408 Query 116 RVIHITATEKN-TDSTPAYPKMNYFDT-----EEDYLEAHGWAPYIREFTRVFKGDKPEV 169 I + K + K YF+ ED L R+++G Sbjct 2409 DSIFDSLNMKAAVGALYKGKKKEYFEQLNTTEREDLLRL--------SCERLYEGKMG-- 2458 Query 170 LWYLFLkkeiikeekiRNSDIRQIVCADPIYTRIGA--CLEAHQNALMKQHTDT--SVGQ 225 +W LK E+ +EK+ + R A PI T +G C++ N + SVG Sbjct 2459 VWNGSLKAELRPKEKLEQNKTRTFTAA-PIDTLLGGKVCVDDFNNRFYSLNLKGPWSVGM 2517 Query 226 CGWSPMEGGFKKTMQRLVNKGNKHFIEFDWTRYDGTIPPALFKHIKEIRWNFINKDQREK 285 + GG+ + +Q+L + + + D +++D ++ P L + +IR +F+ + E Sbjct 2518 ---TKFYGGWNELLQKLPD--GWIYCDADGSQFDSSLTPYLINAVVQIREHFM--EDWEI 2570 Query 286 YRHVHEWYVDNLLNRHVLLPSGEVTLQTRGNPSGQFSTPMDNNMV 330 R + + ++ +L P G + + +GN SGQ ST +DN ++ Sbjct 2571 GRTMLRNFYTEIVYTPILTPDGTIVKKFKGNNSGQPSTVVDNTLM 2615