TBLASTN 2.8.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= FEN1_ENTBH B7XHS8 Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140} (FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}) (3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}) (Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}) Length=358 Score E Sequences producing significant alignments: (Bits) Value scaffold-162 257 8e-77 scaffold-85 256 2e-76 scaffold-444 72.4 1e-13 scaffold-423 65.5 2e-11 > scaffold-162 Length=314529 Score = 257 bits (656), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 227/364 (62%), Gaps = 22/364 (6%) Frame = +1 Query 1 MGIKRLSKLIKTYCSEGVQNRELKYYSGYKIAIDASMCIYQFLVAVRAEG-QSLSWGDST 59 MGI+ L+K+I + ++ + Y G K+AIDASM IYQFL+AVR+EG Q ++ T Sbjct 62959 MGIQGLTKVIGDHAPNALKTN*ISSYFGRKVAIDASMSIYQFLIAVRSEGNQLMNESGET 63138 Query 60 TSHISGIFYRSIRWIENGIIPVFVFDGIPPEEKIHEFEKRTKRRQDINAKLQDAIEQQDQ 119 TSH+ GIFYR++R I+NGI PV+VFDG PP K E KR +RR++ + L+ A E Sbjct 63139 TSHLMGIFYRTLRMIDNGIKPVYVFDGKPPTLKSGELAKRLERRKEAQSGLEAA*ESGSA 63318 Query 120 VLVSKYDRMNVKMEKSHIEECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDM 179 + K+ R VK+ K H +EC+K L+L+ IPYV +P EAEA CA + K+ V A +EDM Sbjct 63319 EAMEKFQRRTVKVSK*HNDECKKLLKLMGIPYVESPCEAEA*CAAMAKAGIVYAAGSEDM 63498 Query 180 DSLCFGSPLLLRNFNTALSQKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRG 239 D+L F +P+LLR+ + +K P+ E +L ++L GL FT++QFVDLCILLGCDY +I+G Sbjct 63499 DTLTF*TPVLLRHLTFSE*RKEPIIEIHLDEVLSGLDFTLDQFVDLCILLGCDYCDSIKG 63678 Query 240 VGMKRAFEYIKKYKSIDNLIGIVD-----FPDDFKYKEARTIFFTLGTDtsnnftnenpi 294 +G KRA + IK++K I+N++ +D P+D+ YK+AR +F Sbjct 63679 IGPKRAVDLIKEHKCIENVLEHLDSDKYPIPEDWPYKDARKLFLN--------------- 63813 Query 295 ntnIATWDLIAVDSASINIEAVIDFLCNEKGFDKGRIETGIkklqkqkkvnkqTRIDSFF 354 ++ I + + N E +I F+ +E F++ RI +G+K+L K + Q R+D FF Sbjct 63814 -PDVTDPKDIDLKWEAPNEEELIKFMVHENQFNEDRIRSGLKRL*KARSTTTQGRLDGFF 63990 Query 355 KKKL 358 K+L Sbjct 63991 GKQL 64002 > scaffold-85 Length=662615 Score = 256 bits (653), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/362 (42%), Positives = 224/362 (62%), Gaps = 22/362 (6%) Frame = -1 Query 1 MGIKRLSKLIKTYCSEGVQNRELKYYSGYKIAIDASMCIYQFLVAVRAEG-QSLSWGDST 59 MGI+ L+K+I + ++ + Y G K+AIDASM IYQFL+AVR+EG Q ++ T Sbjct 39032 MGIQGLTKVIGDHAPNALKTN*ISSYFGRKVAIDASMSIYQFLIAVRSEGNQLMNESGET 38853 Query 60 TSHISGIFYRSIRWIENGIIPVFVFDGIPPEEKIHEFEKRTKRRQDINAKLQDAIEQQDQ 119 TSH+ GIFYR++R I+NGI PV+VFDG PP K E KR +RR++ + L+ A E Sbjct 38852 TSHLMGIFYRTLRMIDNGIKPVYVFDGKPPTLKSGELAKRLERRKEAQSGLEAA*ESGSA 38673 Query 120 VLVSKYDRMNVKMEKSHIEECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDM 179 + K+ R VK+ K H +EC+K L+L+ IPYV +P EAEA CA L K+ V A +EDM Sbjct 38672 EAMEKFQRRTVKVSK*HNDECKKLLKLMGIPYVESPCEAEA*CAALAKAGKVYAAGSEDM 38493 Query 180 DSLCFGSPLLLRNFNTALSQKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRG 239 D+L F +P+LLR+ + +K P+ E +L ++L GL FT++QFVDLCILLGCDY +I+G Sbjct 38492 DTLTF*TPVLLRHLTFSEQRKEPIIEIHLDEVLSGLDFTLDQFVDLCILLGCDYCDSIKG 38313 Query 240 VGMKRAFEYIKKYKSIDNLIGIVD-----FPDDFKYKEARTIFFTLGTDtsnnftnenpi 294 +G KRA + IK++K I+N++ +D P+D+ YK+AR +F Sbjct 38312 IGPKRAVDLIKEHKCIENVLEHLDSDKYPIPEDWPYKDARKLFLN--------------- 38178 Query 295 ntnIATWDLIAVDSASINIEAVIDFLCNEKGFDKGRIETGIkklqkqkkvnkqTRIDSFF 354 + I + + N E +I F+ +E F++ RI +G+K+L K + Q R+D FF Sbjct 38177 -PEVTDPKDIDLKWEAPNEEELIKFMVHENQFNEDRIRSGLKRL*KARSTTTQGRLDGFF 38001 Query 355 KK 356 K Sbjct 38000 GK 37995 > scaffold-444 Length=851481 Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 1/110 (1%) Frame = -1 Query 144 LRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNF-NTALSQKLP 202 L+ +N+ YV+AP EA+A A+L + D + TED D L FG LL N ++ Sbjct 682899 LKSINVKYVVAPYEADAQLAYLSINGSADLIITEDSDLLVFGCKTLLTKLDNEGNGMEVC 682720 Query 203 VEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYIKKY 252 ++E + L+ +T++ F +CIL GCDY A+ G+G+K+A IK++ Sbjct 682719 LKEVFDSQELDMSGWTVDMFKRMCILSGCDYLASATGLGLKKAHRLIKRH 682570 > scaffold-423 Length=1446679 Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 4/119 (3%) Frame = -2 Query 142 KTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNFNTALSQKL 201 + L L +P++IAP EAEA C L K VD + ++D D FG+ + RNF +Q Sbjct 177246 ELLNLFGVPFLIAPGEAEA*CVQLQKIGLVDGIISDDSDVFAFGATKVYRNF---YNQAK 177076 Query 202 PVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYIKKYKSIDNLIG 260 +E ++ I L T+E+ + L LLGCDY+ + G+G+ A E + ++ S D +IG Sbjct 177075 FLEYFSKDDIERHLCLTVERIIFLAYLLGCDYTDGVGGIGVVGAMEVLAEFDSSD-MIG 176902 Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 4/119 (3%) Frame = +2 Query 142 KTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDMDSLCFGSPLLLRNFNTALSQKL 201 + L L +P++IAP EAEA C L K VD + ++D D FG+ + RNF +Q Sbjct 1114328 ELLNLFGVPFLIAPGEAEA*CVQLQKIGLVDGIISDDSDVFAFGATKVYRNF---YNQAK 1114498 Query 202 PVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRGVGMKRAFEYIKKYKSIDNLIG 260 +E ++ I L T+++ + L LLGCDY+ + G+G+ A E + ++ S D +IG Sbjct 1114499 FIEFFSKDDIERHLCLTVDRIIFLAYLLGCDYTDGVGGIGVVGAMEVLAEFDSSD-MIG 1114672 Lambda K H a alpha 0.323 0.139 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2020834291 Database: X5.fasta Posted date: Dec 26, 2021 4:22 PM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40