TBLASTN 2.8.1+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= RS18_ENCCU Q8SRP2 40S ribosomal protein S18

Length=153
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-157                                                        105     2e-27
  scaffold-300                                                        105     3e-27


> scaffold-157
Length=706690

 Score = 105 bits (263),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 65/148 (44%), Positives = 96/148 (65%), Gaps = 0/148 (0%)
 Frame = -3

Query  6       DPAEVQYIVRIHNTNIDGTKRIPFALtkirgigiriataiCKRLGIDLRKRAGEMGEDEM  65
               +    Q+I+R+ NTNIDG  +I +ALT I+G+G R A   CK+  +D  KRAGE+  +E+
Sbjct  582236  ETENFQHILRVLNTNIDGRHKIMYALTDIKGVGRRYANLACKKADVDTNKRAGELTTEEL  582057

Query  66      KRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYR  125
               +RI + + +P    IP+  +N  +DI DG+   L+   LD  LR  +ER KK +  R  R
Sbjct  582056  ERIVNIMQNPRQFKIPDWMLNR*KDIKDGSYG*LLSNFLDNSLREDLERLKKIRAHRGLR  581877

Query  126     LDVGLKVRGQRTKSNGRRGRSMGVSRKK  153
                  GL+VRGQ TK++GRRG+++GVS+KK
Sbjct  581876  HYWGLRVRGQHTKTSGRRGKTVGVSKKK  581793


> scaffold-300
Length=293202

 Score = 105 bits (263),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 65/148 (44%), Positives = 96/148 (65%), Gaps = 0/148 (0%)
 Frame = +1

Query  6       DPAEVQYIVRIHNTNIDGTKRIPFALtkirgigiriataiCKRLGIDLRKRAGEMGEDEM  65
               +    Q+I+R+ NTNIDG  +I +ALT I+G+G R A   CK+  +D  KRAGE+  +E+
Sbjct  122161  ETENFQHILRVLNTNIDGRHKIMYALTDIKGVGRRYANLACKKADVDTNKRAGELTTEEL  122340

Query  66      KRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYR  125
               +RI + + +P    IP+  +N  +DI DG+   L+   LD  LR  +ER KK +  R  R
Sbjct  122341  ERIVNIMQNPRQFKIPDWMLNR*KDIKDGSYG*LLSNFLDNSLREDLERLKKIRAHRGLR  122520

Query  126     LDVGLKVRGQRTKSNGRRGRSMGVSRKK  153
                  GL+VRGQ TK++GRRG+++GVS+KK
Sbjct  122521  HYWGLRVRGQHTKTSGRRGKTVGVSKKK  122604



Lambda      K        H        a         alpha
   0.320    0.138    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 500552256


  Database: X5.fasta
    Posted date:  Dec 26, 2021  4:22 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40